AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0852880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0852880 MtrunA17_Chr5g0429521 95.114 307 15 0 1 307 1 307 0.0 611
Msa0852880 MtrunA17_Chr3g0104071 65.957 329 83 8 1 307 1 322 2.94e-148 419
Msa0852880 MtrunA17_Chr7g0241761 58.013 312 116 8 1 303 7 312 2.99e-115 335
Msa0852880 MtrunA17_Chr5g0436501 62.871 202 68 3 4 203 2 198 8.60e-87 261
Msa0852880 MtrunA17_Chr1g0162081 52.151 186 74 2 26 200 9 190 2.55e-58 189
Msa0852880 MtrunA17_Chr4g0062741 44.538 238 94 5 29 233 8 240 3.95e-56 183
Msa0852880 MtrunA17_Chr1g0210471 52.273 176 77 3 27 200 22 192 4.67e-56 181
Msa0852880 MtrunA17_Chr8g0365011 38.743 191 84 4 23 199 2 173 6.82e-39 138
Msa0852880 MtrunA17_Chr2g0331031 73.239 71 19 0 127 197 104 174 8.18e-32 121
Msa0852880 MtrunA17_Chr6g0488471 52.632 114 49 1 126 239 91 199 3.02e-31 118
Msa0852880 MtrunA17_Chr4g0055931 73.239 71 19 0 126 196 89 159 3.32e-31 119
Msa0852880 MtrunA17_Chr8g0389241 45.695 151 58 5 123 253 96 242 1.49e-30 116
Msa0852880 MtrunA17_Chr5g0415191 70.513 78 23 0 126 203 96 173 8.58e-29 112
Msa0852880 MtrunA17_Chr4g0059701 66.667 81 27 0 122 202 74 154 5.60e-27 107
Msa0852880 MtrunA17_Chr3g0135671 44.737 152 65 6 105 240 59 207 1.97e-26 104
Msa0852880 MtrunA17_Chr5g0440731 53.846 91 38 2 124 211 97 186 1.21e-24 100
Msa0852880 MtrunA17_Chr3g0092621 64.179 67 24 0 132 198 84 150 2.86e-24 97.1
Msa0852880 MtrunA17_Chr5g0440741 45.385 130 61 5 90 211 54 181 3.60e-24 99.4
Msa0852880 MtrunA17_Chr8g0364741 36.719 128 70 2 26 149 7 127 1.42e-23 93.6
Msa0852880 MtrunA17_Chr5g0432921 36.471 170 88 7 23 188 15 168 4.12e-23 95.1
Msa0852880 MtrunA17_Chr5g0409841 41.667 156 67 6 68 211 29 172 4.49e-23 95.1
Msa0852880 MtrunA17_Chr5g0432941 35.673 171 87 6 23 188 16 168 2.64e-22 92.8
Msa0852880 MtrunA17_Chr5g0409831 56.322 87 34 2 128 211 73 158 2.50e-20 87.8
Msa0852880 MtrunA17_Chr6g0452791 66.129 62 20 1 132 192 80 141 2.98e-20 86.3
Msa0852880 MtrunA17_Chr1g0155181 49.315 73 37 0 24 96 2 74 3.91e-20 83.2
Msa0852880 MtrunA17_Chr8g0373111 51.389 72 34 1 25 96 1 71 3.35e-19 80.1
Msa0852880 MtrunA17_Chr8g0373121 51.389 72 34 1 25 96 1 71 3.35e-19 80.1
Msa0852880 MtrunA17_Chr3g0144631 52.308 65 31 0 29 93 16 80 3.36e-19 80.5
Msa0852880 MtrunA17_Chr8g0373131 51.389 72 34 1 25 96 1 71 3.47e-19 80.1
Msa0852880 MtrunA17_Chr3g0141601 54.545 66 30 0 26 91 4 69 5.99e-19 80.1
Msa0852880 MtrunA17_Chr5g0404101 46.875 64 34 0 28 91 18 81 9.02e-19 79.7
Msa0852880 MtrunA17_Chr8g0364731 54.762 84 35 2 141 222 10 92 4.73e-18 80.5
Msa0852880 MtrunA17_Chr6g0449111 47.297 74 39 0 24 97 5 78 4.83e-18 77.4
Msa0852880 MtrunA17_Chr8g0373101 49.231 65 32 1 25 89 1 64 4.02e-16 72.0
Msa0852880 MtrunA17_Chr3g0081631 50.725 69 33 1 24 91 5 73 9.85e-16 71.2
Msa0852880 MtrunA17_Chr5g0404301 50.820 61 29 1 29 89 4 63 2.98e-15 69.3
Msa0852880 MtrunA17_Chr3g0113121 37.984 129 67 2 80 201 49 171 9.51e-15 72.0
Msa0852880 MtrunA17_Chr7g0255841 53.333 60 28 0 32 91 15 74 1.38e-14 68.2
Msa0852880 MtrunA17_Chr1g0192061 52.055 73 30 2 134 202 63 134 1.88e-13 67.8
Msa0852880 MtrunA17_Chr3g0141641 44.444 63 35 0 29 91 3 65 5.15e-12 61.2
Msa0852880 MtrunA17_Chr8g0370121 43.056 72 36 2 129 196 97 167 1.32e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0852880 AT2G38090.1 64.904 208 60 2 5 201 5 210 3.61e-97 288
Msa0852880 AT5G58900.1 68.224 214 53 4 5 204 1 213 2.35e-96 286
Msa0852880 AT5G05790.2 58.796 216 81 4 14 225 13 224 5.06e-79 242
Msa0852880 AT5G05790.1 58.796 216 81 4 14 225 13 224 5.06e-79 242
Msa0852880 AT3G11280.2 67.052 173 48 2 29 201 33 196 4.03e-78 239
Msa0852880 AT3G11280.1 67.052 173 48 2 29 201 33 196 4.03e-78 239
Msa0852880 AT5G01200.1 59.799 199 67 3 16 201 17 215 1.08e-77 238
Msa0852880 AT1G49010.1 50.495 202 75 4 23 200 2 202 6.80e-55 181
Msa0852880 AT5G08520.1 49.735 189 78 3 22 200 5 186 2.39e-54 179
Msa0852880 AT5G04760.1 40.678 236 113 4 26 261 3 211 3.36e-50 166
Msa0852880 AT5G23650.1 41.538 195 88 3 18 197 2 185 2.15e-42 149
Msa0852880 AT3G10580.2 41.573 178 80 7 23 197 2 158 2.60e-32 120
Msa0852880 AT3G10580.1 41.573 178 80 7 23 197 2 158 4.24e-32 120
Msa0852880 AT4G09450.1 36.744 215 110 5 28 242 6 194 6.38e-32 118
Msa0852880 AT5G47390.1 59.259 108 36 3 92 197 60 161 8.03e-31 119
Msa0852880 AT5G61620.1 52.941 119 50 3 127 242 103 218 3.99e-29 114
Msa0852880 AT5G56840.1 50.962 104 50 1 98 200 57 160 2.49e-27 107
Msa0852880 AT1G70000.1 70.833 72 21 0 126 197 92 163 1.03e-26 105
Msa0852880 AT1G70000.2 70.833 72 21 0 126 197 92 163 1.03e-26 105
Msa0852880 AT3G16350.1 58.763 97 40 0 127 223 132 228 7.99e-26 106
Msa0852880 AT1G74840.2 70.833 72 21 0 127 198 91 162 4.97e-25 100
Msa0852880 AT1G74840.1 70.833 72 21 0 127 198 91 162 7.55e-25 101
Msa0852880 AT1G19000.2 65.789 76 26 0 128 203 98 173 2.29e-24 100
Msa0852880 AT1G19000.1 65.789 76 26 0 128 203 98 173 2.29e-24 100
Msa0852880 AT1G75250.2 50.000 88 37 1 24 111 7 87 8.13e-22 88.2
Msa0852880 AT1G75250.1 50.000 88 37 1 24 111 7 87 1.21e-21 89.0
Msa0852880 AT3G10590.1 34.783 207 106 8 26 223 4 190 3.19e-21 90.1
Msa0852880 AT2G21650.1 52.941 68 32 0 29 96 14 81 3.96e-18 78.6
Msa0852880 AT4G39250.1 49.231 65 33 0 29 93 14 78 6.14e-17 75.5
Msa0852880 AT1G19510.1 51.613 62 30 0 32 93 15 76 1.48e-15 71.6
Msa0852880 AT2G18328.1 52.542 59 28 0 33 91 15 73 2.55e-13 64.7
Msa0852880 AT4G36570.1 56.818 44 19 0 29 72 12 55 5.35e-12 60.5

Find 76 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACATATGTTAAAATTT+TGG 0.142044 5_4:+44160345 Msa0852880:three_prime_UTR
AATCAACACTATGGACTTAT+TGG 0.204334 5_4:-44160454 None:intergenic
CAAGACCAAAATCTTCAAAA+AGG 0.271482 5_4:+44160006 Msa0852880:CDS
TTCTTGGCATATCAACTTAC+AGG 0.273992 5_4:+44160372 Msa0852880:three_prime_UTR
CACCTTTGCCATACTTCTTT+AGG 0.307378 5_4:-44159618 None:intergenic
TATTTCATAAGACAACTTTC+AGG 0.314437 5_4:+44159712 Msa0852880:CDS
CCTTTCTTCCTTTCCTGCTC+AGG 0.322349 5_4:-44159001 None:intergenic
TTCACCCAATCTAAGGTAAA+AGG 0.324294 5_4:-44158920 None:intergenic
CGAACTATTCACCCAATCTA+AGG 0.344973 5_4:-44158927 None:intergenic
CTACTAGGCCTAAAGAAGTA+TGG 0.375050 5_4:+44159610 Msa0852880:CDS
GCTGGGTTGATTCCAGTTCC+TGG 0.382171 5_4:+44158878 Msa0852880:CDS
TTGAGGGGAGCGTGCGTTGA+TGG 0.386009 5_4:+44160198 Msa0852880:three_prime_UTR
ACATCACTGACCGTCTTTCC+TGG 0.386531 5_4:-44158809 None:intergenic
GATGTTTGTAATATAGAAGC+TGG 0.393501 5_4:+44158860 Msa0852880:CDS
AACATTATTCACATGCATAA+AGG 0.404368 5_4:+44160088 Msa0852880:CDS
TGATAAGATGAAGTGGGAAA+TGG 0.405855 5_4:+44158625 Msa0852880:exon
AAGTTTGTTGGTGCTGCTGC+TGG 0.410002 5_4:-44159867 None:intergenic
TGATGTGATGAGACAATATA+AGG 0.419767 5_4:+44158826 Msa0852880:CDS
AGAAGTATGGCAAAGGTGAT+TGG 0.420618 5_4:+44159623 Msa0852880:CDS
ATTTCTAGTGAAGTTTATCA+TGG 0.438525 5_4:+44160508 Msa0852880:three_prime_UTR
TGGTGAAGTGGATCTATTAC+CGG 0.443254 5_4:-44159821 None:intergenic
GCTATCTTCCATACACCAAT+TGG 0.448071 5_4:-44158681 None:intergenic
CTTATGTTCTGGTGGATTGA+GGG 0.453667 5_4:+44160182 Msa0852880:three_prime_UTR
TTGTGTTCTTCTTCAGTCCA+TGG 0.457416 5_4:-44159028 None:intergenic
TACGATGAATTCAGAGGAAG+TGG 0.462014 5_4:+44158953 Msa0852880:CDS
CATACACACAAAACTCCAAT+TGG 0.463612 5_4:+44158666 Msa0852880:CDS
ATGAAAACTTGCTCGTGAGC+TGG 0.470697 5_4:-44159946 None:intergenic
TCTTATGTTCTGGTGGATTG+AGG 0.471104 5_4:+44160181 Msa0852880:three_prime_UTR
GCATGGCTTGCTACTTGAGT+TGG 0.471843 5_4:-44159682 None:intergenic
GGAGTGTTATAACCAGGAAC+TGG 0.478409 5_4:-44158890 None:intergenic
ACAAAACTCCAATTGGTGTA+TGG 0.484625 5_4:+44158673 Msa0852880:CDS
TATGTGAATATCTTATGTTC+TGG 0.491831 5_4:+44160171 Msa0852880:three_prime_UTR
TCCTGCAGATTATTTCTACT+AGG 0.501666 5_4:+44159595 Msa0852880:intron
TTAGAGCTCCTGAGCAGGAA+AGG 0.515723 5_4:+44158993 Msa0852880:CDS
TAAGATATTCACATATACCT+TGG 0.516725 5_4:-44160163 None:intergenic
TCTAAGGTAAAAGGTGAAGT+AGG 0.517348 5_4:-44158911 None:intergenic
AAGATATTCACATATACCTT+GGG 0.517678 5_4:-44160162 None:intergenic
CCTGAGCAGGAAAGGAAGAA+AGG 0.521387 5_4:+44159001 Msa0852880:CDS
TTTAGTTAGAGCTCCTGAGC+AGG 0.523673 5_4:+44158988 Msa0852880:CDS
AATGATTGAGGTGGGTGAGA+AGG 0.527301 5_4:+44160272 Msa0852880:three_prime_UTR
GAAAACTTGATAAGATGAAG+TGG 0.527680 5_4:+44158618 Msa0852880:exon
TCTTATATCATTGTCAATCA+AGG 0.528102 5_4:-44160310 None:intergenic
CTGCTGGTGTGAAAGTAACA+TGG 0.532432 5_4:-44159851 None:intergenic
GCTACTTTATGCCATCGATC+CGG 0.541949 5_4:-44158776 None:intergenic
TAACAAATAAAACTTTAAAG+AGG 0.542250 5_4:+44160417 Msa0852880:three_prime_UTR
TTATGTTCTGGTGGATTGAG+GGG 0.544191 5_4:+44160183 Msa0852880:three_prime_UTR
GAATGATCAACAAAATGCTA+TGG 0.544650 5_4:+44159915 Msa0852880:CDS
ATAAAGATACGCCGGATCGA+TGG 0.544701 5_4:+44158765 Msa0852880:CDS
GTGAATATCTTATGTTCTGG+TGG 0.545144 5_4:+44160174 Msa0852880:three_prime_UTR
TTGTTGCCGTCGAAGTTTGT+TGG 0.545215 5_4:-44159879 None:intergenic
CATGGGATTCTGTGGTGAAG+TGG 0.560049 5_4:-44159833 None:intergenic
TCAAGTCAGTATAATGATTG+AGG 0.560467 5_4:+44160260 Msa0852880:three_prime_UTR
AGTCAGTATAATGATTGAGG+TGG 0.575295 5_4:+44160263 Msa0852880:three_prime_UTR
CTATGGACTTATTGGCATTG+CGG 0.579525 5_4:-44160446 None:intergenic
CTCTTCTGGAGTCCATTGTG+TGG 0.588727 5_4:-44158708 None:intergenic
AAAGTAGCTGAAATGATACC+AGG 0.595280 5_4:+44158791 Msa0852880:CDS
TTCATAAGACAACTTTCAGG+AGG 0.595999 5_4:+44159715 Msa0852880:CDS
ATGTTTGTAATATAGAAGCT+GGG 0.604659 5_4:+44158861 Msa0852880:CDS
GTCAGTATAATGATTGAGGT+GGG 0.605498 5_4:+44160264 Msa0852880:three_prime_UTR
AAAACTTGATAAGATGAAGT+GGG 0.612600 5_4:+44158619 Msa0852880:exon
GGCCTAAAGAAGTATGGCAA+AGG 0.616426 5_4:+44159616 Msa0852880:CDS
AAAGGAAGAAAGGAGTGCCA+TGG 0.621552 5_4:+44159011 Msa0852880:CDS
TGAAATGATACCAGGAAAGA+CGG 0.622184 5_4:+44158799 Msa0852880:CDS
TTTCAGGAGGAAAAGACAAG+AGG 0.628437 5_4:+44159728 Msa0852880:CDS
TGGCATATCAACTTACAGGA+AGG 0.632783 5_4:+44160376 Msa0852880:three_prime_UTR
TCGAGTTACGATGAATTCAG+AGG 0.636913 5_4:+44158947 Msa0852880:CDS
GAAGTAGGAGTGTTATAACC+AGG 0.644855 5_4:-44158896 None:intergenic
TGCTGGTGTGAAAGTAACAT+GGG 0.648997 5_4:-44159850 None:intergenic
GCAGCACCAACAAACTTCGA+CGG 0.651047 5_4:+44159873 Msa0852880:CDS
TTGAGTGTTAAAGTGCATGC+AGG 0.655521 5_4:-44160241 None:intergenic
AGTTCATGATAAAGATACGC+CGG 0.676724 5_4:+44158757 Msa0852880:CDS
AAGATAGCATGACCACACAA+TGG 0.678472 5_4:+44158696 Msa0852880:CDS
GTCTTCGTATCCACATAACA+TGG 0.678504 5_4:+44160041 Msa0852880:CDS
GAAAGTAACATGGGATTCTG+TGG 0.681888 5_4:-44159841 None:intergenic
ACTTGTTCTTCAGAAGACAC+CGG 0.691433 5_4:+44159802 Msa0852880:CDS
TCATAGGAGTTAAAACCATG+AGG 0.695559 5_4:-44159973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATAAATATATTTAA+AGG + chr5_4:44159329-44159348 Msa0852880:intron 0.0%
!! TTATTTATAAATATATTTAA+AGG + chr5_4:44159329-44159348 Msa0852880:intron 0.0%
!!! TTAGTATTTTTTCTTTACTA+GGG + chr5_4:44159136-44159155 Msa0852880:intron 15.0%
!! TATAAATATATTTAAAGGCT+TGG + chr5_4:44159334-44159353 Msa0852880:intron 15.0%
!! ATATCATATTAAGTTAAAGT+AGG + chr5_4:44159498-44159517 Msa0852880:intron 15.0%
!!! AAAATTTTAACATATGTCTT+TGG - chr5_4:44160346-44160365 None:intergenic 15.0%
!!! AAAGACATATGTTAAAATTT+TGG + chr5_4:44160345-44160364 Msa0852880:three_prime_UTR 15.0%
!!! TTAAAATTTTGGTTAATTCT+TGG + chr5_4:44160356-44160375 Msa0852880:three_prime_UTR 15.0%
!!! TAACAAATAAAACTTTAAAG+AGG + chr5_4:44160417-44160436 Msa0852880:three_prime_UTR 15.0%
!!! TTAGTATTTTTTCTTTACTA+GGG + chr5_4:44159136-44159155 Msa0852880:intron 15.0%
!! TATAAATATATTTAAAGGCT+TGG + chr5_4:44159334-44159353 Msa0852880:intron 15.0%
!! ATATCATATTAAGTTAAAGT+AGG + chr5_4:44159498-44159517 Msa0852880:intron 15.0%
!!! AAAATTTTAACATATGTCTT+TGG - chr5_4:44160346-44160365 None:intergenic 15.0%
!!! AAAGACATATGTTAAAATTT+TGG + chr5_4:44160345-44160364 Msa0852880:three_prime_UTR 15.0%
!!! TTAAAATTTTGGTTAATTCT+TGG + chr5_4:44160356-44160375 Msa0852880:three_prime_UTR 15.0%
!!! TAACAAATAAAACTTTAAAG+AGG + chr5_4:44160417-44160436 Msa0852880:three_prime_UTR 15.0%
!! AATAACAAAACAAATACAGA+AGG - chr5_4:44159066-44159085 None:intergenic 20.0%
!!! GTTAGTATTTTTTCTTTACT+AGG + chr5_4:44159135-44159154 Msa0852880:intron 20.0%
!!! TTAAGAAAGTATAGGAATAA+AGG + chr5_4:44159260-44159279 Msa0852880:intron 20.0%
!! TTAACTTAATATGATATTCG+AGG - chr5_4:44159495-44159514 None:intergenic 20.0%
!! AATAACAAAACAAATACAGA+AGG - chr5_4:44159066-44159085 None:intergenic 20.0%
!!! GTTAGTATTTTTTCTTTACT+AGG + chr5_4:44159135-44159154 Msa0852880:intron 20.0%
!!! TTAAGAAAGTATAGGAATAA+AGG + chr5_4:44159260-44159279 Msa0852880:intron 20.0%
!! TTAACTTAATATGATATTCG+AGG - chr5_4:44159495-44159514 None:intergenic 20.0%
! AAAACTTGATAAGATGAAGT+GGG + chr5_4:44158619-44158638 Msa0852880:exon 25.0%
!! TCAAATATTTTGTTCTCTTC+TGG - chr5_4:44158725-44158744 None:intergenic 25.0%
! ATGTTTGTAATATAGAAGCT+GGG + chr5_4:44158861-44158880 Msa0852880:CDS 25.0%
! ATAAAGGATGGAATTTACAA+AGG + chr5_4:44159276-44159295 Msa0852880:intron 25.0%
!!! CTTGGATATTTTCATTTTTC+AGG + chr5_4:44159352-44159371 Msa0852880:intron 25.0%
!!! TCATTTTTCAGGTTGTAATA+AGG + chr5_4:44159363-44159382 Msa0852880:intron 25.0%
!! CAAAATCATTTTGTAAGGTA+AGG - chr5_4:44159450-44159469 None:intergenic 25.0%
!! CCTTACAAAATCATTTTGTA+AGG - chr5_4:44159455-44159474 None:intergenic 25.0%
!! CCTTACAAAATGATTTTGTA+AGG + chr5_4:44159452-44159471 Msa0852880:intron 25.0%
! AAGTAGGTTATGATATAAGT+TGG + chr5_4:44159514-44159533 Msa0852880:intron 25.0%
!!! ATGATATAAGTTGGTTTTGT+AGG + chr5_4:44159523-44159542 Msa0852880:intron 25.0%
!!! TGATATAAGTTGGTTTTGTA+GGG + chr5_4:44159524-44159543 Msa0852880:intron 25.0%
! TAACTTAAGATAGTAACAGA+AGG - chr5_4:44159566-44159585 None:intergenic 25.0%
!! TTATGAAATACTTTTGAGCA+TGG - chr5_4:44159702-44159721 None:intergenic 25.0%
! TATTTCATAAGACAACTTTC+AGG + chr5_4:44159712-44159731 Msa0852880:CDS 25.0%
! GTTAATCTCTCAGAAAAAAT+TGG + chr5_4:44159778-44159797 Msa0852880:CDS 25.0%
! AAGACCAAAATCTTCAAAAA+GGG + chr5_4:44160007-44160026 Msa0852880:CDS 25.0%
! ATTTGAAAAACCATGTTATG+TGG - chr5_4:44160054-44160073 None:intergenic 25.0%
! AACATTATTCACATGCATAA+AGG + chr5_4:44160088-44160107 Msa0852880:CDS 25.0%
! AAGATATTCACATATACCTT+GGG - chr5_4:44160165-44160184 None:intergenic 25.0%
! TAAGATATTCACATATACCT+TGG - chr5_4:44160166-44160185 None:intergenic 25.0%
! TATGTGAATATCTTATGTTC+TGG + chr5_4:44160171-44160190 Msa0852880:three_prime_UTR 25.0%
! TCTTATATCATTGTCAATCA+AGG - chr5_4:44160313-44160332 None:intergenic 25.0%
!!! ATTTCTAGTGAAGTTTATCA+TGG + chr5_4:44160508-44160527 Msa0852880:three_prime_UTR 25.0%
! AAAACTTGATAAGATGAAGT+GGG + chr5_4:44158619-44158638 Msa0852880:exon 25.0%
!! TCAAATATTTTGTTCTCTTC+TGG - chr5_4:44158725-44158744 None:intergenic 25.0%
! ATGTTTGTAATATAGAAGCT+GGG + chr5_4:44158861-44158880 Msa0852880:CDS 25.0%
! ATAAAGGATGGAATTTACAA+AGG + chr5_4:44159276-44159295 Msa0852880:intron 25.0%
!!! CTTGGATATTTTCATTTTTC+AGG + chr5_4:44159352-44159371 Msa0852880:intron 25.0%
!!! TCATTTTTCAGGTTGTAATA+AGG + chr5_4:44159363-44159382 Msa0852880:intron 25.0%
!! CAAAATCATTTTGTAAGGTA+AGG - chr5_4:44159450-44159469 None:intergenic 25.0%
!! CCTTACAAAATCATTTTGTA+AGG - chr5_4:44159455-44159474 None:intergenic 25.0%
!! CCTTACAAAATGATTTTGTA+AGG + chr5_4:44159452-44159471 Msa0852880:intron 25.0%
! AAGTAGGTTATGATATAAGT+TGG + chr5_4:44159514-44159533 Msa0852880:intron 25.0%
!!! ATGATATAAGTTGGTTTTGT+AGG + chr5_4:44159523-44159542 Msa0852880:intron 25.0%
!!! TGATATAAGTTGGTTTTGTA+GGG + chr5_4:44159524-44159543 Msa0852880:intron 25.0%
! TAACTTAAGATAGTAACAGA+AGG - chr5_4:44159566-44159585 None:intergenic 25.0%
!! TTATGAAATACTTTTGAGCA+TGG - chr5_4:44159702-44159721 None:intergenic 25.0%
! TATTTCATAAGACAACTTTC+AGG + chr5_4:44159712-44159731 Msa0852880:CDS 25.0%
! GTTAATCTCTCAGAAAAAAT+TGG + chr5_4:44159778-44159797 Msa0852880:CDS 25.0%
! AAGACCAAAATCTTCAAAAA+GGG + chr5_4:44160007-44160026 Msa0852880:CDS 25.0%
! ATTTGAAAAACCATGTTATG+TGG - chr5_4:44160054-44160073 None:intergenic 25.0%
! AACATTATTCACATGCATAA+AGG + chr5_4:44160088-44160107 Msa0852880:CDS 25.0%
! AAGATATTCACATATACCTT+GGG - chr5_4:44160165-44160184 None:intergenic 25.0%
! TAAGATATTCACATATACCT+TGG - chr5_4:44160166-44160185 None:intergenic 25.0%
! TATGTGAATATCTTATGTTC+TGG + chr5_4:44160171-44160190 Msa0852880:three_prime_UTR 25.0%
! TCTTATATCATTGTCAATCA+AGG - chr5_4:44160313-44160332 None:intergenic 25.0%
!!! ATTTCTAGTGAAGTTTATCA+TGG + chr5_4:44160508-44160527 Msa0852880:three_prime_UTR 25.0%
GAAAACTTGATAAGATGAAG+TGG + chr5_4:44158618-44158637 Msa0852880:exon 30.0%
TGATGTGATGAGACAATATA+AGG + chr5_4:44158826-44158845 Msa0852880:CDS 30.0%
GATGTTTGTAATATAGAAGC+TGG + chr5_4:44158860-44158879 Msa0852880:CDS 30.0%
! TTCACCTTTTACCTTAGATT+GGG + chr5_4:44158916-44158935 Msa0852880:CDS 30.0%
! TTGTGAGCTTAAGAAAGTAT+AGG + chr5_4:44159252-44159271 Msa0852880:intron 30.0%
! GAAAGTATAGGAATAAAGGA+TGG + chr5_4:44159264-44159283 Msa0852880:intron 30.0%
TACAAAGGTAATTTAGACCT+AGG + chr5_4:44159291-44159310 Msa0852880:intron 30.0%
! TTTAAACTTATCACTAGCCT+AGG - chr5_4:44159403-44159422 None:intergenic 30.0%
GAATGATCAACAAAATGCTA+TGG + chr5_4:44159915-44159934 Msa0852880:CDS 30.0%
CAAGACCAAAATCTTCAAAA+AGG + chr5_4:44160006-44160025 Msa0852880:CDS 30.0%
TCAAGTCAGTATAATGATTG+AGG + chr5_4:44160260-44160279 Msa0852880:three_prime_UTR 30.0%
AATCAACACTATGGACTTAT+TGG - chr5_4:44160457-44160476 None:intergenic 30.0%
!!! AAGTCCATAGTGTTGATTTT+TGG + chr5_4:44160459-44160478 Msa0852880:three_prime_UTR 30.0%
!!! AGTCCATAGTGTTGATTTTT+GGG + chr5_4:44160460-44160479 Msa0852880:three_prime_UTR 30.0%
GAAAACTTGATAAGATGAAG+TGG + chr5_4:44158618-44158637 Msa0852880:exon 30.0%
TGATGTGATGAGACAATATA+AGG + chr5_4:44158826-44158845 Msa0852880:CDS 30.0%
GATGTTTGTAATATAGAAGC+TGG + chr5_4:44158860-44158879 Msa0852880:CDS 30.0%
! TTCACCTTTTACCTTAGATT+GGG + chr5_4:44158916-44158935 Msa0852880:CDS 30.0%
! TTGTGAGCTTAAGAAAGTAT+AGG + chr5_4:44159252-44159271 Msa0852880:intron 30.0%
! GAAAGTATAGGAATAAAGGA+TGG + chr5_4:44159264-44159283 Msa0852880:intron 30.0%
TACAAAGGTAATTTAGACCT+AGG + chr5_4:44159291-44159310 Msa0852880:intron 30.0%
! TTTAAACTTATCACTAGCCT+AGG - chr5_4:44159403-44159422 None:intergenic 30.0%
GAATGATCAACAAAATGCTA+TGG + chr5_4:44159915-44159934 Msa0852880:CDS 30.0%
CAAGACCAAAATCTTCAAAA+AGG + chr5_4:44160006-44160025 Msa0852880:CDS 30.0%
TCAAGTCAGTATAATGATTG+AGG + chr5_4:44160260-44160279 Msa0852880:three_prime_UTR 30.0%
AATCAACACTATGGACTTAT+TGG - chr5_4:44160457-44160476 None:intergenic 30.0%
!!! AAGTCCATAGTGTTGATTTT+TGG + chr5_4:44160459-44160478 Msa0852880:three_prime_UTR 30.0%
!!! AGTCCATAGTGTTGATTTTT+GGG + chr5_4:44160460-44160479 Msa0852880:three_prime_UTR 30.0%
TGATAAGATGAAGTGGGAAA+TGG + chr5_4:44158625-44158644 Msa0852880:exon 35.0%
CATACACACAAAACTCCAAT+TGG + chr5_4:44158666-44158685 Msa0852880:CDS 35.0%
ACAAAACTCCAATTGGTGTA+TGG + chr5_4:44158673-44158692 Msa0852880:CDS 35.0%
AGTTCATGATAAAGATACGC+CGG + chr5_4:44158757-44158776 Msa0852880:CDS 35.0%
AAAGTAGCTGAAATGATACC+AGG + chr5_4:44158791-44158810 Msa0852880:CDS 35.0%
TGAAATGATACCAGGAAAGA+CGG + chr5_4:44158799-44158818 Msa0852880:CDS 35.0%
! TCTAAGGTAAAAGGTGAAGT+AGG - chr5_4:44158914-44158933 None:intergenic 35.0%
! CTTCACCTTTTACCTTAGAT+TGG + chr5_4:44158915-44158934 Msa0852880:CDS 35.0%
! TTCACCCAATCTAAGGTAAA+AGG - chr5_4:44158923-44158942 None:intergenic 35.0%
! ACTAGTAGCTCAATTGGTTT+GGG - chr5_4:44159189-44159208 None:intergenic 35.0%
TCTAACACTAGTAGCTCAAT+TGG - chr5_4:44159195-44159214 None:intergenic 35.0%
AAAGGTAATTTAGACCTAGG+AGG + chr5_4:44159294-44159313 Msa0852880:intron 35.0%
!!! AGGTTTTTTAGCTTTCACCT+AGG + chr5_4:44159383-44159402 Msa0852880:intron 35.0%
! TGATTTTGTAAGGTCGAGTT+AGG + chr5_4:44159462-44159481 Msa0852880:intron 35.0%
!! TCCTGCAGATTATTTCTACT+AGG + chr5_4:44159595-44159614 Msa0852880:intron 35.0%
TTCATAAGACAACTTTCAGG+AGG + chr5_4:44159715-44159734 Msa0852880:CDS 35.0%
TCATAGGAGTTAAAACCATG+AGG - chr5_4:44159976-44159995 None:intergenic 35.0%
!!! TCATGGTTTTAACTCCTATG+AGG + chr5_4:44159975-44159994 Msa0852880:CDS 35.0%
!! GTCTTGCATTTTAACCTCAT+AGG - chr5_4:44159992-44160011 None:intergenic 35.0%
!! CAAGCCCTTTTTGAAGATTT+TGG - chr5_4:44160014-44160033 None:intergenic 35.0%
GTGAATATCTTATGTTCTGG+TGG + chr5_4:44160174-44160193 Msa0852880:three_prime_UTR 35.0%
AGTCAGTATAATGATTGAGG+TGG + chr5_4:44160263-44160282 Msa0852880:three_prime_UTR 35.0%
GTCAGTATAATGATTGAGGT+GGG + chr5_4:44160264-44160283 Msa0852880:three_prime_UTR 35.0%
TTCTTGGCATATCAACTTAC+AGG + chr5_4:44160372-44160391 Msa0852880:three_prime_UTR 35.0%
TCACCCAAAAATCAACACTA+TGG - chr5_4:44160466-44160485 None:intergenic 35.0%
TGATAAGATGAAGTGGGAAA+TGG + chr5_4:44158625-44158644 Msa0852880:exon 35.0%
CATACACACAAAACTCCAAT+TGG + chr5_4:44158666-44158685 Msa0852880:CDS 35.0%
ACAAAACTCCAATTGGTGTA+TGG + chr5_4:44158673-44158692 Msa0852880:CDS 35.0%
AGTTCATGATAAAGATACGC+CGG + chr5_4:44158757-44158776 Msa0852880:CDS 35.0%
AAAGTAGCTGAAATGATACC+AGG + chr5_4:44158791-44158810 Msa0852880:CDS 35.0%
TGAAATGATACCAGGAAAGA+CGG + chr5_4:44158799-44158818 Msa0852880:CDS 35.0%
! TCTAAGGTAAAAGGTGAAGT+AGG - chr5_4:44158914-44158933 None:intergenic 35.0%
! CTTCACCTTTTACCTTAGAT+TGG + chr5_4:44158915-44158934 Msa0852880:CDS 35.0%
! TTCACCCAATCTAAGGTAAA+AGG - chr5_4:44158923-44158942 None:intergenic 35.0%
! ACTAGTAGCTCAATTGGTTT+GGG - chr5_4:44159189-44159208 None:intergenic 35.0%
TCTAACACTAGTAGCTCAAT+TGG - chr5_4:44159195-44159214 None:intergenic 35.0%
AAAGGTAATTTAGACCTAGG+AGG + chr5_4:44159294-44159313 Msa0852880:intron 35.0%
!!! AGGTTTTTTAGCTTTCACCT+AGG + chr5_4:44159383-44159402 Msa0852880:intron 35.0%
! TGATTTTGTAAGGTCGAGTT+AGG + chr5_4:44159462-44159481 Msa0852880:intron 35.0%
!! TCCTGCAGATTATTTCTACT+AGG + chr5_4:44159595-44159614 Msa0852880:intron 35.0%
TTCATAAGACAACTTTCAGG+AGG + chr5_4:44159715-44159734 Msa0852880:CDS 35.0%
TCATAGGAGTTAAAACCATG+AGG - chr5_4:44159976-44159995 None:intergenic 35.0%
!!! TCATGGTTTTAACTCCTATG+AGG + chr5_4:44159975-44159994 Msa0852880:CDS 35.0%
!! GTCTTGCATTTTAACCTCAT+AGG - chr5_4:44159992-44160011 None:intergenic 35.0%
!! CAAGCCCTTTTTGAAGATTT+TGG - chr5_4:44160014-44160033 None:intergenic 35.0%
GTGAATATCTTATGTTCTGG+TGG + chr5_4:44160174-44160193 Msa0852880:three_prime_UTR 35.0%
AGTCAGTATAATGATTGAGG+TGG + chr5_4:44160263-44160282 Msa0852880:three_prime_UTR 35.0%
GTCAGTATAATGATTGAGGT+GGG + chr5_4:44160264-44160283 Msa0852880:three_prime_UTR 35.0%
TTCTTGGCATATCAACTTAC+AGG + chr5_4:44160372-44160391 Msa0852880:three_prime_UTR 35.0%
TCACCCAAAAATCAACACTA+TGG - chr5_4:44160466-44160485 None:intergenic 35.0%
! TTTTGTGTGTATGATGCAGG+AGG - chr5_4:44158659-44158678 None:intergenic 40.0%
!! GAGTTTTGTGTGTATGATGC+AGG - chr5_4:44158662-44158681 None:intergenic 40.0%
GCTATCTTCCATACACCAAT+TGG - chr5_4:44158684-44158703 None:intergenic 40.0%
AAGATAGCATGACCACACAA+TGG + chr5_4:44158696-44158715 Msa0852880:CDS 40.0%
!! GAAGTAGGAGTGTTATAACC+AGG - chr5_4:44158899-44158918 None:intergenic 40.0%
CGAACTATTCACCCAATCTA+AGG - chr5_4:44158930-44158949 None:intergenic 40.0%
TCGAGTTACGATGAATTCAG+AGG + chr5_4:44158947-44158966 Msa0852880:CDS 40.0%
TACGATGAATTCAGAGGAAG+TGG + chr5_4:44158953-44158972 Msa0852880:CDS 40.0%
TTGTGTTCTTCTTCAGTCCA+TGG - chr5_4:44159031-44159050 None:intergenic 40.0%
CACTAGTAGCTCAATTGGTT+TGG - chr5_4:44159190-44159209 None:intergenic 40.0%
GTAATTTAGACCTAGGAGGT+AGG + chr5_4:44159298-44159317 Msa0852880:intron 40.0%
AATTGATGTTCCTACCTCCT+AGG - chr5_4:44159311-44159330 None:intergenic 40.0%
GCCTAGTAGAAATAATCTGC+AGG - chr5_4:44159599-44159618 None:intergenic 40.0%
CTACTAGGCCTAAAGAAGTA+TGG + chr5_4:44159610-44159629 Msa0852880:CDS 40.0%
CACCTTTGCCATACTTCTTT+AGG - chr5_4:44159621-44159640 None:intergenic 40.0%
! AGAAGTATGGCAAAGGTGAT+TGG + chr5_4:44159623-44159642 Msa0852880:CDS 40.0%
TTTCAGGAGGAAAAGACAAG+AGG + chr5_4:44159728-44159747 Msa0852880:CDS 40.0%
ACTTGTTCTTCAGAAGACAC+CGG + chr5_4:44159802-44159821 Msa0852880:CDS 40.0%
TGGTGAAGTGGATCTATTAC+CGG - chr5_4:44159824-44159843 None:intergenic 40.0%
GAAAGTAACATGGGATTCTG+TGG - chr5_4:44159844-44159863 None:intergenic 40.0%
TGCTGGTGTGAAAGTAACAT+GGG - chr5_4:44159853-44159872 None:intergenic 40.0%
! CAAGTTTTCATGGATCCTCA+TGG + chr5_4:44159958-44159977 Msa0852880:CDS 40.0%
GTCTTCGTATCCACATAACA+TGG + chr5_4:44160041-44160060 Msa0852880:CDS 40.0%
!! AGAGTGTCTGAATTTTCCCA+AGG + chr5_4:44160146-44160165 Msa0852880:three_prime_UTR 40.0%
!! TCTTATGTTCTGGTGGATTG+AGG + chr5_4:44160181-44160200 Msa0852880:three_prime_UTR 40.0%
!! CTTATGTTCTGGTGGATTGA+GGG + chr5_4:44160182-44160201 Msa0852880:three_prime_UTR 40.0%
!! TTATGTTCTGGTGGATTGAG+GGG + chr5_4:44160183-44160202 Msa0852880:three_prime_UTR 40.0%
TTGAGTGTTAAAGTGCATGC+AGG - chr5_4:44160244-44160263 None:intergenic 40.0%
TGGCATATCAACTTACAGGA+AGG + chr5_4:44160376-44160395 Msa0852880:three_prime_UTR 40.0%
CTATGGACTTATTGGCATTG+CGG - chr5_4:44160449-44160468 None:intergenic 40.0%
! TTTTGTGTGTATGATGCAGG+AGG - chr5_4:44158659-44158678 None:intergenic 40.0%
!! GAGTTTTGTGTGTATGATGC+AGG - chr5_4:44158662-44158681 None:intergenic 40.0%
GCTATCTTCCATACACCAAT+TGG - chr5_4:44158684-44158703 None:intergenic 40.0%
AAGATAGCATGACCACACAA+TGG + chr5_4:44158696-44158715 Msa0852880:CDS 40.0%
!! GAAGTAGGAGTGTTATAACC+AGG - chr5_4:44158899-44158918 None:intergenic 40.0%
CGAACTATTCACCCAATCTA+AGG - chr5_4:44158930-44158949 None:intergenic 40.0%
TCGAGTTACGATGAATTCAG+AGG + chr5_4:44158947-44158966 Msa0852880:CDS 40.0%
TACGATGAATTCAGAGGAAG+TGG + chr5_4:44158953-44158972 Msa0852880:CDS 40.0%
TTGTGTTCTTCTTCAGTCCA+TGG - chr5_4:44159031-44159050 None:intergenic 40.0%
CACTAGTAGCTCAATTGGTT+TGG - chr5_4:44159190-44159209 None:intergenic 40.0%
GTAATTTAGACCTAGGAGGT+AGG + chr5_4:44159298-44159317 Msa0852880:intron 40.0%
AATTGATGTTCCTACCTCCT+AGG - chr5_4:44159311-44159330 None:intergenic 40.0%
GCCTAGTAGAAATAATCTGC+AGG - chr5_4:44159599-44159618 None:intergenic 40.0%
CTACTAGGCCTAAAGAAGTA+TGG + chr5_4:44159610-44159629 Msa0852880:CDS 40.0%
CACCTTTGCCATACTTCTTT+AGG - chr5_4:44159621-44159640 None:intergenic 40.0%
! AGAAGTATGGCAAAGGTGAT+TGG + chr5_4:44159623-44159642 Msa0852880:CDS 40.0%
TTTCAGGAGGAAAAGACAAG+AGG + chr5_4:44159728-44159747 Msa0852880:CDS 40.0%
ACTTGTTCTTCAGAAGACAC+CGG + chr5_4:44159802-44159821 Msa0852880:CDS 40.0%
TGGTGAAGTGGATCTATTAC+CGG - chr5_4:44159824-44159843 None:intergenic 40.0%
GAAAGTAACATGGGATTCTG+TGG - chr5_4:44159844-44159863 None:intergenic 40.0%
TGCTGGTGTGAAAGTAACAT+GGG - chr5_4:44159853-44159872 None:intergenic 40.0%
! CAAGTTTTCATGGATCCTCA+TGG + chr5_4:44159958-44159977 Msa0852880:CDS 40.0%
GTCTTCGTATCCACATAACA+TGG + chr5_4:44160041-44160060 Msa0852880:CDS 40.0%
!! AGAGTGTCTGAATTTTCCCA+AGG + chr5_4:44160146-44160165 Msa0852880:three_prime_UTR 40.0%
!! TCTTATGTTCTGGTGGATTG+AGG + chr5_4:44160181-44160200 Msa0852880:three_prime_UTR 40.0%
!! CTTATGTTCTGGTGGATTGA+GGG + chr5_4:44160182-44160201 Msa0852880:three_prime_UTR 40.0%
!! TTATGTTCTGGTGGATTGAG+GGG + chr5_4:44160183-44160202 Msa0852880:three_prime_UTR 40.0%
TTGAGTGTTAAAGTGCATGC+AGG - chr5_4:44160244-44160263 None:intergenic 40.0%
TGGCATATCAACTTACAGGA+AGG + chr5_4:44160376-44160395 Msa0852880:three_prime_UTR 40.0%
CTATGGACTTATTGGCATTG+CGG - chr5_4:44160449-44160468 None:intergenic 40.0%
ATAAAGATACGCCGGATCGA+TGG + chr5_4:44158765-44158784 Msa0852880:CDS 45.0%
! GCTACTTTATGCCATCGATC+CGG - chr5_4:44158779-44158798 None:intergenic 45.0%
! GGAGTGTTATAACCAGGAAC+TGG - chr5_4:44158893-44158912 None:intergenic 45.0%
TTTAGTTAGAGCTCCTGAGC+AGG + chr5_4:44158988-44159007 Msa0852880:CDS 45.0%
!! AAAGGAAGAAAGGAGTGCCA+TGG + chr5_4:44159011-44159030 Msa0852880:CDS 45.0%
! TGGTTTGGGCTAACGGTTAA+AGG - chr5_4:44159175-44159194 None:intergenic 45.0%
!! GCTCAATTGGTTTGGGCTAA+CGG - chr5_4:44159182-44159201 None:intergenic 45.0%
! GGCCTAAAGAAGTATGGCAA+AGG + chr5_4:44159616-44159635 Msa0852880:CDS 45.0%
CTGCTGGTGTGAAAGTAACA+TGG - chr5_4:44159854-44159873 None:intergenic 45.0%
TTGTTGCCGTCGAAGTTTGT+TGG - chr5_4:44159882-44159901 None:intergenic 45.0%
! CGACGGCAACAAATTTTCGT+TGG + chr5_4:44159890-44159909 Msa0852880:CDS 45.0%
! CGGCAACAAATTTTCGTTGG+AGG + chr5_4:44159893-44159912 Msa0852880:CDS 45.0%
! ATGAAAACTTGCTCGTGAGC+TGG - chr5_4:44159949-44159968 None:intergenic 45.0%
! AGCTCACGAGCAAGTTTTCA+TGG + chr5_4:44159948-44159967 Msa0852880:CDS 45.0%
AATGATTGAGGTGGGTGAGA+AGG + chr5_4:44160272-44160291 Msa0852880:three_prime_UTR 45.0%
ATAAAGATACGCCGGATCGA+TGG + chr5_4:44158765-44158784 Msa0852880:CDS 45.0%
! GCTACTTTATGCCATCGATC+CGG - chr5_4:44158779-44158798 None:intergenic 45.0%
! GGAGTGTTATAACCAGGAAC+TGG - chr5_4:44158893-44158912 None:intergenic 45.0%
TTTAGTTAGAGCTCCTGAGC+AGG + chr5_4:44158988-44159007 Msa0852880:CDS 45.0%
!! AAAGGAAGAAAGGAGTGCCA+TGG + chr5_4:44159011-44159030 Msa0852880:CDS 45.0%
! TGGTTTGGGCTAACGGTTAA+AGG - chr5_4:44159175-44159194 None:intergenic 45.0%
!! GCTCAATTGGTTTGGGCTAA+CGG - chr5_4:44159182-44159201 None:intergenic 45.0%
! GGCCTAAAGAAGTATGGCAA+AGG + chr5_4:44159616-44159635 Msa0852880:CDS 45.0%
CTGCTGGTGTGAAAGTAACA+TGG - chr5_4:44159854-44159873 None:intergenic 45.0%
TTGTTGCCGTCGAAGTTTGT+TGG - chr5_4:44159882-44159901 None:intergenic 45.0%
! CGACGGCAACAAATTTTCGT+TGG + chr5_4:44159890-44159909 Msa0852880:CDS 45.0%
! CGGCAACAAATTTTCGTTGG+AGG + chr5_4:44159893-44159912 Msa0852880:CDS 45.0%
! ATGAAAACTTGCTCGTGAGC+TGG - chr5_4:44159949-44159968 None:intergenic 45.0%
! AGCTCACGAGCAAGTTTTCA+TGG + chr5_4:44159948-44159967 Msa0852880:CDS 45.0%
AATGATTGAGGTGGGTGAGA+AGG + chr5_4:44160272-44160291 Msa0852880:three_prime_UTR 45.0%
!! CTCTTCTGGAGTCCATTGTG+TGG - chr5_4:44158711-44158730 None:intergenic 50.0%
ACATCACTGACCGTCTTTCC+TGG - chr5_4:44158812-44158831 None:intergenic 50.0%
TTAGAGCTCCTGAGCAGGAA+AGG + chr5_4:44158993-44159012 Msa0852880:CDS 50.0%
CCTTTCTTCCTTTCCTGCTC+AGG - chr5_4:44159004-44159023 None:intergenic 50.0%
CCTGAGCAGGAAAGGAAGAA+AGG + chr5_4:44159001-44159020 Msa0852880:CDS 50.0%
!! GCATGGCTTGCTACTTGAGT+TGG - chr5_4:44159685-44159704 None:intergenic 50.0%
CATGGGATTCTGTGGTGAAG+TGG - chr5_4:44159836-44159855 None:intergenic 50.0%
!! AAGTTTGTTGGTGCTGCTGC+TGG - chr5_4:44159870-44159889 None:intergenic 50.0%
GCAGCACCAACAAACTTCGA+CGG + chr5_4:44159873-44159892 Msa0852880:CDS 50.0%
!! CTCTTCTGGAGTCCATTGTG+TGG - chr5_4:44158711-44158730 None:intergenic 50.0%
ACATCACTGACCGTCTTTCC+TGG - chr5_4:44158812-44158831 None:intergenic 50.0%
TTAGAGCTCCTGAGCAGGAA+AGG + chr5_4:44158993-44159012 Msa0852880:CDS 50.0%
CCTTTCTTCCTTTCCTGCTC+AGG - chr5_4:44159004-44159023 None:intergenic 50.0%
CCTGAGCAGGAAAGGAAGAA+AGG + chr5_4:44159001-44159020 Msa0852880:CDS 50.0%
!! GCATGGCTTGCTACTTGAGT+TGG - chr5_4:44159685-44159704 None:intergenic 50.0%
CATGGGATTCTGTGGTGAAG+TGG - chr5_4:44159836-44159855 None:intergenic 50.0%
!! AAGTTTGTTGGTGCTGCTGC+TGG - chr5_4:44159870-44159889 None:intergenic 50.0%
GCAGCACCAACAAACTTCGA+CGG + chr5_4:44159873-44159892 Msa0852880:CDS 50.0%
!! GCTGGGTTGATTCCAGTTCC+TGG + chr5_4:44158878-44158897 Msa0852880:CDS 55.0%
!! GCTGGGTTGATTCCAGTTCC+TGG + chr5_4:44158878-44158897 Msa0852880:CDS 55.0%
! TTGAGGGGAGCGTGCGTTGA+TGG + chr5_4:44160198-44160217 Msa0852880:three_prime_UTR 60.0%
! TTGAGGGGAGCGTGCGTTGA+TGG + chr5_4:44160198-44160217 Msa0852880:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 44158617 44160571 44158617 ID=Msa0852880;Name=Msa0852880
chr5_4 mRNA 44158617 44160571 44158617 ID=Msa0852880-mRNA-1;Parent=Msa0852880;Name=Msa0852880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=15|1|1|1|1|1|2|464|307
chr5_4 exon 44158617 44159050 44158617 ID=Msa0852880-mRNA-1:exon:13979;Parent=Msa0852880-mRNA-1
chr5_4 exon 44159603 44160571 44159603 ID=Msa0852880-mRNA-1:exon:13980;Parent=Msa0852880-mRNA-1
chr5_4 five_prime_UTR 44158617 44158631 44158617 ID=Msa0852880-mRNA-1:five_prime_utr;Parent=Msa0852880-mRNA-1
chr5_4 CDS 44158632 44159050 44158632 ID=Msa0852880-mRNA-1:cds;Parent=Msa0852880-mRNA-1
chr5_4 CDS 44159603 44160107 44159603 ID=Msa0852880-mRNA-1:cds;Parent=Msa0852880-mRNA-1
chr5_4 three_prime_UTR 44160108 44160571 44160108 ID=Msa0852880-mRNA-1:three_prime_utr;Parent=Msa0852880-mRNA-1
Gene Sequence

>Msa0852880

ATGAAGTGGGAAATGGAAGTTCTTCCTCCTGCATCATACACACAAAACTCCAATTGGTGTATGGAAGATAGCATGACCACACAATGGACTCCAGAAGAGAACAAAATATTTGAAAATGCTCTTGCAGTTCATGATAAAGATACGCCGGATCGATGGCATAAAGTAGCTGAAATGATACCAGGAAAGACGGTCAGTGATGTGATGAGACAATATAAGGAATTAGAAGATGATGTTTGTAATATAGAAGCTGGGTTGATTCCAGTTCCTGGTTATAACACTCCTACTTCACCTTTTACCTTAGATTGGGTGAATAGTTCGAGTTACGATGAATTCAGAGGAAGTGGAAAGAGATCTTCTTTAGTTAGAGCTCCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAACACAAATTATTTCTACTAGGCCTAAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACAAGAACACCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGAAAAGACAAGAGGAGAGCAAGCATACATGACATAACAACAGTTAATCTCTCAGAAAAAATTGGAACTTGTTCTTCAGAAGACACCGGTAATAGATCCACTTCACCACAGAATCCCATGTTACTTTCACACCAGCAGCAGCACCAACAAACTTCGACGGCAACAAATTTTCGTTGGAGGAATGATCAACAAAATGCTATGGCTTTGAATCCAGCTCACGAGCAAGTTTTCATGGATCCTCATGGTTTTAACTCCTATGAGGTTAAAATGCAAGACCAAAATCTTCAAAAAGGGCTTGTTCATGAGTCTTCGTATCCACATAACATGGTTTTTCAAATGCAACATTCATCACAACATTATTCACATGCATAA
Protein sequence

>Msa0852880

MKWEMEVLPPASYTQNSNWCMEDSMTTQWTPEENKIFENALAVHDKDTPDRWHKVAEMIPGKTVSDVMRQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSSYDEFRGSGKRSSLVRAPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSEKIGTCSSEDTGNRSTSPQNPMLLSHQQQHQQTSTATNFRWRNDQQNAMALNPAHEQVFMDPHGFNSYEVKMQDQNLQKGLVHESSYPHNMVFQMQHSSQHYSHA*