Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855030 | XP_003616032.1 | 97.423 | 194 | 5 | 0 | 3 | 196 | 165 | 358 | 1.04e-133 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855030 | sp|Q6S4P4|RF2B_ORYSJ | 61.421 | 197 | 68 | 6 | 3 | 196 | 138 | 329 | 8.81e-61 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855030 | G7K0T5 | 97.423 | 194 | 5 | 0 | 3 | 196 | 165 | 358 | 4.96e-134 | 389 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0855030 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855030 | MtrunA17_Chr5g0432701 | 97.423 | 194 | 5 | 0 | 3 | 196 | 165 | 358 | 9.55e-138 | 389 |
| Msa0855030 | MtrunA17_Chr3g0107491 | 78.462 | 195 | 41 | 1 | 3 | 196 | 183 | 377 | 1.43e-107 | 313 |
| Msa0855030 | MtrunA17_Chr3g0128781 | 57.286 | 199 | 79 | 3 | 3 | 196 | 114 | 311 | 5.35e-67 | 207 |
| Msa0855030 | MtrunA17_Chr2g0329551 | 80.851 | 94 | 18 | 0 | 3 | 96 | 227 | 320 | 3.52e-44 | 152 |
| Msa0855030 | MtrunA17_Chr4g0036071 | 76.344 | 93 | 22 | 0 | 3 | 95 | 366 | 458 | 7.11e-41 | 144 |
| Msa0855030 | MtrunA17_Chr6g0463571 | 73.864 | 88 | 23 | 0 | 3 | 90 | 157 | 244 | 2.67e-36 | 128 |
| Msa0855030 | MtrunA17_Chr1g0156051 | 64.516 | 93 | 33 | 0 | 3 | 95 | 393 | 485 | 4.18e-22 | 93.2 |
| Msa0855030 | MtrunA17_Chr2g0316551 | 47.191 | 89 | 47 | 0 | 1 | 89 | 212 | 300 | 2.21e-18 | 81.6 |
| Msa0855030 | MtrunA17_Chr2g0325131 | 47.191 | 89 | 47 | 0 | 1 | 89 | 195 | 283 | 1.16e-17 | 79.3 |
| Msa0855030 | MtrunA17_Chr4g0040891 | 44.944 | 89 | 49 | 0 | 1 | 89 | 198 | 286 | 9.53e-17 | 76.6 |
| Msa0855030 | MtrunA17_Chr8g0380611 | 40.476 | 84 | 50 | 0 | 6 | 89 | 238 | 321 | 9.28e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855030 | AT1G06850.1 | 61.413 | 184 | 59 | 4 | 3 | 185 | 154 | 326 | 3.48e-67 | 209 |
| Msa0855030 | AT2G40620.1 | 53.778 | 225 | 62 | 7 | 3 | 196 | 154 | 367 | 1.23e-58 | 188 |
| Msa0855030 | AT2G31370.5 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 6.67e-44 | 150 |
| Msa0855030 | AT1G06070.1 | 75.728 | 103 | 25 | 0 | 3 | 105 | 216 | 318 | 1.26e-43 | 150 |
| Msa0855030 | AT2G31370.2 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT2G31370.4 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT2G31370.1 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT2G31370.7 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT2G31370.3 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT2G31370.6 | 68.421 | 114 | 35 | 1 | 3 | 115 | 207 | 320 | 1.43e-43 | 150 |
| Msa0855030 | AT4G38900.2 | 77.660 | 94 | 21 | 0 | 1 | 94 | 398 | 491 | 9.61e-41 | 145 |
| Msa0855030 | AT4G38900.3 | 77.660 | 94 | 21 | 0 | 1 | 94 | 398 | 491 | 9.61e-41 | 145 |
| Msa0855030 | AT4G38900.1 | 79.348 | 92 | 19 | 0 | 3 | 94 | 406 | 497 | 1.08e-40 | 145 |
| Msa0855030 | AT1G43700.1 | 73.118 | 93 | 25 | 0 | 3 | 95 | 200 | 292 | 1.86e-38 | 135 |
| Msa0855030 | AT2G21230.4 | 71.277 | 94 | 27 | 0 | 1 | 94 | 374 | 467 | 1.70e-36 | 133 |
| Msa0855030 | AT2G21230.1 | 71.277 | 94 | 27 | 0 | 1 | 94 | 374 | 467 | 1.70e-36 | 133 |
| Msa0855030 | AT2G21230.3 | 66.000 | 100 | 28 | 1 | 1 | 94 | 374 | 473 | 1.21e-33 | 125 |
| Msa0855030 | AT2G21230.2 | 75.325 | 77 | 19 | 0 | 1 | 77 | 374 | 450 | 1.43e-30 | 116 |
| Msa0855030 | AT1G06850.2 | 86.792 | 53 | 7 | 0 | 3 | 55 | 154 | 206 | 1.63e-22 | 91.3 |
| Msa0855030 | AT3G58120.1 | 46.067 | 89 | 48 | 0 | 1 | 89 | 206 | 294 | 7.01e-18 | 80.5 |
| Msa0855030 | AT2G12900.1 | 41.304 | 92 | 54 | 0 | 1 | 92 | 120 | 211 | 9.74e-18 | 79.0 |
| Msa0855030 | AT2G42380.2 | 46.067 | 89 | 48 | 0 | 1 | 89 | 190 | 278 | 1.89e-17 | 79.0 |
| Msa0855030 | AT2G13150.1 | 39.560 | 91 | 55 | 0 | 1 | 91 | 153 | 243 | 8.70e-15 | 70.9 |
| Msa0855030 | AT2G12940.1 | 39.326 | 89 | 54 | 0 | 3 | 91 | 154 | 242 | 3.42e-14 | 69.7 |
| Msa0855030 | AT2G42380.5 | 43.590 | 78 | 44 | 0 | 1 | 78 | 190 | 267 | 2.52e-13 | 67.0 |
| Msa0855030 | AT2G21235.1 | 34.058 | 138 | 59 | 3 | 3 | 108 | 365 | 502 | 2.63e-13 | 68.2 |
| Msa0855030 | AT3G58120.2 | 43.421 | 76 | 43 | 0 | 1 | 76 | 206 | 281 | 1.41e-12 | 65.1 |
| Msa0855030 | AT1G58110.1 | 42.353 | 85 | 49 | 0 | 6 | 90 | 238 | 322 | 4.25e-12 | 64.3 |
| Msa0855030 | AT1G58110.2 | 42.353 | 85 | 49 | 0 | 6 | 90 | 238 | 322 | 4.25e-12 | 64.3 |
Find 69 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAATTATTTGTTCTTT+GGG | 0.142916 | 5_4:-48066020 | Msa0855030:three_prime_UTR |
| CTCGTTGTATCATTGTATTT+TGG | 0.182569 | 5_4:-48065946 | Msa0855030:three_prime_UTR |
| ATTCTTAATTATTTGTTCTT+TGG | 0.192606 | 5_4:-48066021 | Msa0855030:three_prime_UTR |
| AACATCCAGTTGCCATTATT+TGG | 0.230060 | 5_4:-48066341 | Msa0855030:CDS |
| CTTTGGGGTGCTCGCCAAAA+AGG | 0.238417 | 5_4:-48066004 | Msa0855030:three_prime_UTR |
| AGTTGTACAATCCGATTGTT+TGG | 0.335729 | 5_4:-48065769 | Msa0855030:three_prime_UTR |
| TTCATTGACACTCCAATTCA+TGG | 0.349390 | 5_4:-48065841 | Msa0855030:three_prime_UTR |
| ATTCCACCACAAGGTCCTTC+TGG | 0.351170 | 5_4:-48066371 | Msa0855030:CDS |
| TTCTGAATATGAATGAGAAT+TGG | 0.357804 | 5_4:+48066277 | None:intergenic |
| GAAGGACCTTGTGGTGGAAT+TGG | 0.359677 | 5_4:+48066374 | None:intergenic |
| TTGATTCAGTAAATTGCATT+TGG | 0.368971 | 5_4:+48066405 | None:intergenic |
| ACAATCGGATTGTACAACTA+TGG | 0.381255 | 5_4:+48065773 | None:intergenic |
| GTTGTACAATCCGATTGTTT+GGG | 0.387981 | 5_4:-48065768 | Msa0855030:three_prime_UTR |
| CTAGCTATTCATAAAGTTCA+AGG | 0.389780 | 5_4:+48065719 | None:intergenic |
| CCAGTCAACACATGTACTTC+AGG | 0.415798 | 5_4:-48066070 | Msa0855030:three_prime_UTR |
| AAGAACTCTAGCCCATGAAT+TGG | 0.417924 | 5_4:+48065829 | None:intergenic |
| TGATGAGATGGCATGCTAGA+TGG | 0.419162 | 5_4:+48066311 | None:intergenic |
| GATGGGGAGTGACCAAATAA+TGG | 0.440624 | 5_4:+48066329 | None:intergenic |
| ATAATGGCAACTGGATGTTC+CGG | 0.448057 | 5_4:+48066345 | None:intergenic |
| GAAAGAAGTTGAGAGATTGA+AGG | 0.452522 | 5_4:-48066480 | Msa0855030:CDS |
| GCTTAACAGTTTACTATAGC+AGG | 0.463870 | 5_4:+48065741 | None:intergenic |
| TTCAATTGTAATAATTGTTG+TGG | 0.464812 | 5_4:-48067311 | None:intergenic |
| GTCCCTGAAAACGACCAATC+TGG | 0.466033 | 5_4:+48066240 | None:intergenic |
| TTGACTTTCTAACTTATCCA+TGG | 0.476674 | 5_4:-48066118 | Msa0855030:three_prime_UTR |
| TGCAGAAAGAGAAGGATCTT+CGG | 0.478143 | 5_4:+48066181 | None:intergenic |
| AGTGACCAAATAATGGCAAC+TGG | 0.481233 | 5_4:+48066336 | None:intergenic |
| GTTGCTCCATGGCTTGCAGA+CGG | 0.483654 | 5_4:+48066667 | None:intergenic |
| AATATGAATGAGAATTGGTT+TGG | 0.494880 | 5_4:+48066282 | None:intergenic |
| TTATTGTAGCGAGACACAAC+AGG | 0.501264 | 5_4:-48066720 | Msa0855030:intron |
| AGCAGGTAACCCCAAACAAT+CGG | 0.504068 | 5_4:+48065758 | None:intergenic |
| TCTTAATTATTTGTTCTTTG+GGG | 0.508199 | 5_4:-48066019 | Msa0855030:three_prime_UTR |
| TGCCCAACTGACACTATACC+AGG | 0.512274 | 5_4:-48067133 | Msa0855030:intron |
| TGCTCGTTCAAAAGAGAGAA+AGG | 0.513956 | 5_4:-48067220 | Msa0855030:CDS |
| TGACTTTCTAACTTATCCAT+GGG | 0.516968 | 5_4:-48066117 | Msa0855030:three_prime_UTR |
| GAGTTGTAGCTTCAGTCTGT+AGG | 0.522836 | 5_4:+48067160 | None:intergenic |
| CACAAGGTCCTTCTGGTCAC+CGG | 0.525022 | 5_4:-48066364 | Msa0855030:CDS |
| TTCTAGTTCATGTATATAGC+GGG | 0.529677 | 5_4:+48067197 | None:intergenic |
| GAGAGATTGAAGGTTGCTAC+TGG | 0.533814 | 5_4:-48066470 | Msa0855030:CDS |
| GAGATGTGCTTGTTGCTCCA+TGG | 0.539738 | 5_4:+48066656 | None:intergenic |
| AACCTGGTATAGTGTCAGTT+GGG | 0.543208 | 5_4:+48067131 | None:intergenic |
| GATGAGATGGCATGCTAGAT+GGG | 0.545329 | 5_4:+48066312 | None:intergenic |
| TTATTACAAAATGACCAGAT+TGG | 0.549243 | 5_4:-48066254 | Msa0855030:CDS |
| TGATGATACAAATGAACAGA+GGG | 0.550933 | 5_4:+48065910 | None:intergenic |
| AGTTGTAGCTTCAGTCTGTA+GGG | 0.555319 | 5_4:+48067161 | None:intergenic |
| TCATTGACACTCCAATTCAT+GGG | 0.556369 | 5_4:-48065840 | Msa0855030:three_prime_UTR |
| AAACCTGGTATAGTGTCAGT+TGG | 0.558403 | 5_4:+48067130 | None:intergenic |
| TAAGCTCCGTCTGCAAGCCA+TGG | 0.558627 | 5_4:-48066673 | Msa0855030:CDS |
| AACTTCGCAGCAAAACCCTA+CGG | 0.565622 | 5_4:+48065973 | None:intergenic |
| GTTTGGTGCAGTTGATGAGA+TGG | 0.569320 | 5_4:+48066299 | None:intergenic |
| ACTTCGCAGCAAAACCCTAC+GGG | 0.593591 | 5_4:+48065974 | None:intergenic |
| CTCTCACTTGCAGAAAGAGA+AGG | 0.594947 | 5_4:+48066173 | None:intergenic |
| TGGATGTTCCGGTGACCAGA+AGG | 0.596869 | 5_4:+48066356 | None:intergenic |
| GGACTTGACATTAGTAACAA+AGG | 0.599628 | 5_4:-48066221 | Msa0855030:CDS |
| CCTGAAGTACATGTGTTGAC+TGG | 0.601362 | 5_4:+48066070 | None:intergenic |
| TTGTACAATCCGATTGTTTG+GGG | 0.603225 | 5_4:-48065767 | Msa0855030:three_prime_UTR |
| GTTCTAGTTCATGTATATAG+CGG | 0.607918 | 5_4:+48067196 | None:intergenic |
| TATACATGAACTAGAACGCA+AGG | 0.631345 | 5_4:-48067190 | Msa0855030:CDS |
| CAACAAGCACATCTCCGTGA+TGG | 0.633902 | 5_4:-48066648 | Msa0855030:intron |
| GATAAGTTAGAAAGTCAAGT+GGG | 0.636899 | 5_4:+48066123 | None:intergenic |
| GGTGATAATTGTTACCATCA+CGG | 0.643305 | 5_4:+48066634 | None:intergenic |
| CGGTGACCAGAAGGACCTTG+TGG | 0.645804 | 5_4:+48066365 | None:intergenic |
| TGACCAGAAGGACCTTGTGG+TGG | 0.657394 | 5_4:+48066368 | None:intergenic |
| GGATAAGTTAGAAAGTCAAG+TGG | 0.661543 | 5_4:+48066122 | None:intergenic |
| ATGATGATACAAATGAACAG+AGG | 0.665895 | 5_4:+48065909 | None:intergenic |
| TACGCTCCAATTCCACCACA+AGG | 0.681715 | 5_4:-48066380 | Msa0855030:CDS |
| ATGAGATGGCATGCTAGATG+GGG | 0.693250 | 5_4:+48066313 | None:intergenic |
| CGAGATTAAAAGATTCAGTG+TGG | 0.696481 | 5_4:+48066435 | None:intergenic |
| GAAGTACATGTGTTGACTGG+AGG | 0.718583 | 5_4:+48066073 | None:intergenic |
| GATGATACAAATGAACAGAG+GGG | 0.762184 | 5_4:+48065911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAGAACATTTTATATAAA+AGG | + | chr5_4:48066132-48066151 | None:intergenic | 15.0% |
| !! | ATTCTTAATTATTTGTTCTT+TGG | - | chr5_4:48067009-48067028 | Msa0855030:intron | 15.0% |
| !! | TTCTTAATTATTTGTTCTTT+GGG | - | chr5_4:48067010-48067029 | Msa0855030:intron | 15.0% |
| !!! | TCTAGAACATTTTATATAAA+AGG | + | chr5_4:48066132-48066151 | None:intergenic | 15.0% |
| !! | ATTCTTAATTATTTGTTCTT+TGG | - | chr5_4:48067009-48067028 | Msa0855030:intron | 15.0% |
| !! | TTCTTAATTATTTGTTCTTT+GGG | - | chr5_4:48067010-48067029 | Msa0855030:intron | 15.0% |
| !!! | AGTCATTTTTTAGCTATAAT+TGG | + | chr5_4:48066073-48066092 | None:intergenic | 20.0% |
| !!! | TATAGCTAAAAAATGACTTT+TGG | - | chr5_4:48066075-48066094 | Msa0855030:three_prime_UTR | 20.0% |
| !! | TTTACTCATACTTAAATTTG+TGG | - | chr5_4:48066250-48066269 | Msa0855030:CDS | 20.0% |
| !!! | ATTTTTAACGTATTGTAAGA+AGG | + | chr5_4:48066420-48066439 | None:intergenic | 20.0% |
| !! | TCTTAATTATTTGTTCTTTG+GGG | - | chr5_4:48067011-48067030 | Msa0855030:intron | 20.0% |
| !!! | AGTCATTTTTTAGCTATAAT+TGG | + | chr5_4:48066073-48066092 | None:intergenic | 20.0% |
| !!! | TATAGCTAAAAAATGACTTT+TGG | - | chr5_4:48066075-48066094 | Msa0855030:three_prime_UTR | 20.0% |
| !! | TTTACTCATACTTAAATTTG+TGG | - | chr5_4:48066250-48066269 | Msa0855030:CDS | 20.0% |
| !!! | ATTTTTAACGTATTGTAAGA+AGG | + | chr5_4:48066420-48066439 | None:intergenic | 20.0% |
| !! | TCTTAATTATTTGTTCTTTG+GGG | - | chr5_4:48067011-48067030 | Msa0855030:intron | 20.0% |
| !!! | AGTAACTCTGTTTTGTTTAT+TGG | - | chr5_4:48065973-48065992 | Msa0855030:three_prime_UTR | 25.0% |
| ! | ATAATTGGAACAAGGAAATA+AGG | + | chr5_4:48066058-48066077 | None:intergenic | 25.0% |
| !!! | TTTTAGCTATAATTGGAACA+AGG | + | chr5_4:48066066-48066085 | None:intergenic | 25.0% |
| ! | TACTATACACATAATCACTT+CGG | - | chr5_4:48066156-48066175 | Msa0855030:exon | 25.0% |
| ! | GTAAAAACTGAAAACAATCA+CGG | + | chr5_4:48066235-48066254 | None:intergenic | 25.0% |
| ! | CAAATAATCAAGAAGTGATT+GGG | + | chr5_4:48066285-48066304 | None:intergenic | 25.0% |
| ! | ACAAATAATCAAGAAGTGAT+TGG | + | chr5_4:48066286-48066305 | None:intergenic | 25.0% |
| ! | TTGAAGTTAAATAACTCAAC+TGG | - | chr5_4:48066485-48066504 | Msa0855030:CDS | 25.0% |
| ! | TGAAGTTAAATAACTCAACT+GGG | - | chr5_4:48066486-48066505 | Msa0855030:CDS | 25.0% |
| ! | TTGATTCAGTAAATTGCATT+TGG | + | chr5_4:48066628-48066647 | None:intergenic | 25.0% |
| ! | AATATGAATGAGAATTGGTT+TGG | + | chr5_4:48066751-48066770 | None:intergenic | 25.0% |
| ! | TTCTGAATATGAATGAGAAT+TGG | + | chr5_4:48066756-48066775 | None:intergenic | 25.0% |
| ! | TTATTACAAAATGACCAGAT+TGG | - | chr5_4:48066776-48066795 | Msa0855030:intron | 25.0% |
| !! | TCGTTGTATCATTGTATTTT+GGG | - | chr5_4:48067085-48067104 | Msa0855030:intron | 25.0% |
| !!! | AGTAACTCTGTTTTGTTTAT+TGG | - | chr5_4:48065973-48065992 | Msa0855030:three_prime_UTR | 25.0% |
| ! | ATAATTGGAACAAGGAAATA+AGG | + | chr5_4:48066058-48066077 | None:intergenic | 25.0% |
| !!! | TTTTAGCTATAATTGGAACA+AGG | + | chr5_4:48066066-48066085 | None:intergenic | 25.0% |
| ! | TACTATACACATAATCACTT+CGG | - | chr5_4:48066156-48066175 | Msa0855030:exon | 25.0% |
| ! | GTAAAAACTGAAAACAATCA+CGG | + | chr5_4:48066235-48066254 | None:intergenic | 25.0% |
| ! | CAAATAATCAAGAAGTGATT+GGG | + | chr5_4:48066285-48066304 | None:intergenic | 25.0% |
| ! | ACAAATAATCAAGAAGTGAT+TGG | + | chr5_4:48066286-48066305 | None:intergenic | 25.0% |
| ! | TTGAAGTTAAATAACTCAAC+TGG | - | chr5_4:48066485-48066504 | Msa0855030:CDS | 25.0% |
| ! | TGAAGTTAAATAACTCAACT+GGG | - | chr5_4:48066486-48066505 | Msa0855030:CDS | 25.0% |
| ! | TTGATTCAGTAAATTGCATT+TGG | + | chr5_4:48066628-48066647 | None:intergenic | 25.0% |
| ! | AATATGAATGAGAATTGGTT+TGG | + | chr5_4:48066751-48066770 | None:intergenic | 25.0% |
| ! | TTCTGAATATGAATGAGAAT+TGG | + | chr5_4:48066756-48066775 | None:intergenic | 25.0% |
| ! | TTATTACAAAATGACCAGAT+TGG | - | chr5_4:48066776-48066795 | Msa0855030:intron | 25.0% |
| !! | TCGTTGTATCATTGTATTTT+GGG | - | chr5_4:48067085-48067104 | Msa0855030:intron | 25.0% |
| !! | TTCTAGTTCATGTATATAGC+GGG | + | chr5_4:48065836-48065855 | None:intergenic | 30.0% |
| !! | GTTCTAGTTCATGTATATAG+CGG | + | chr5_4:48065837-48065856 | None:intergenic | 30.0% |
| !! | AATGTTGCTTTGTTTGTGAA+TGG | - | chr5_4:48066205-48066224 | Msa0855030:CDS | 30.0% |
| ! | CACACTGAATCTTTTAATCT+CGG | - | chr5_4:48066596-48066615 | Msa0855030:intron | 30.0% |
| ! | GTAGCACAACATTTTGAATT+TGG | - | chr5_4:48066879-48066898 | Msa0855030:intron | 30.0% |
| GATAAGTTAGAAAGTCAAGT+GGG | + | chr5_4:48066910-48066929 | None:intergenic | 30.0% | |
| TTGACTTTCTAACTTATCCA+TGG | - | chr5_4:48066912-48066931 | Msa0855030:intron | 30.0% | |
| TGACTTTCTAACTTATCCAT+GGG | - | chr5_4:48066913-48066932 | Msa0855030:intron | 30.0% | |
| GCTATGAAAAATAAATCCCA+TGG | + | chr5_4:48066932-48066951 | None:intergenic | 30.0% | |
| ! | CTCGTTGTATCATTGTATTT+TGG | - | chr5_4:48067084-48067103 | Msa0855030:intron | 30.0% |
| ! | CGTTGTATCATTGTATTTTG+GGG | - | chr5_4:48067086-48067105 | Msa0855030:intron | 30.0% |
| TGATGATACAAATGAACAGA+GGG | + | chr5_4:48067123-48067142 | None:intergenic | 30.0% | |
| ATGATGATACAAATGAACAG+AGG | + | chr5_4:48067124-48067143 | None:intergenic | 30.0% | |
| !! | TTCTAGTTCATGTATATAGC+GGG | + | chr5_4:48065836-48065855 | None:intergenic | 30.0% |
| !! | GTTCTAGTTCATGTATATAG+CGG | + | chr5_4:48065837-48065856 | None:intergenic | 30.0% |
| !! | AATGTTGCTTTGTTTGTGAA+TGG | - | chr5_4:48066205-48066224 | Msa0855030:CDS | 30.0% |
| ! | CACACTGAATCTTTTAATCT+CGG | - | chr5_4:48066596-48066615 | Msa0855030:intron | 30.0% |
| ! | GTAGCACAACATTTTGAATT+TGG | - | chr5_4:48066879-48066898 | Msa0855030:intron | 30.0% |
| GATAAGTTAGAAAGTCAAGT+GGG | + | chr5_4:48066910-48066929 | None:intergenic | 30.0% | |
| TTGACTTTCTAACTTATCCA+TGG | - | chr5_4:48066912-48066931 | Msa0855030:intron | 30.0% | |
| TGACTTTCTAACTTATCCAT+GGG | - | chr5_4:48066913-48066932 | Msa0855030:intron | 30.0% | |
| GCTATGAAAAATAAATCCCA+TGG | + | chr5_4:48066932-48066951 | None:intergenic | 30.0% | |
| ! | CTCGTTGTATCATTGTATTT+TGG | - | chr5_4:48067084-48067103 | Msa0855030:intron | 30.0% |
| ! | CGTTGTATCATTGTATTTTG+GGG | - | chr5_4:48067086-48067105 | Msa0855030:intron | 30.0% |
| TGATGATACAAATGAACAGA+GGG | + | chr5_4:48067123-48067142 | None:intergenic | 30.0% | |
| ATGATGATACAAATGAACAG+AGG | + | chr5_4:48067124-48067143 | None:intergenic | 30.0% | |
| TATACATGAACTAGAACGCA+AGG | - | chr5_4:48065840-48065859 | Msa0855030:three_prime_UTR | 35.0% | |
| GATAAATGTCAACACAAACC+TGG | + | chr5_4:48065918-48065937 | None:intergenic | 35.0% | |
| ACATAATCACTTCGGTGATT+TGG | - | chr5_4:48066164-48066183 | Msa0855030:CDS | 35.0% | |
| CATAATCACTTCGGTGATTT+GGG | - | chr5_4:48066165-48066184 | Msa0855030:CDS | 35.0% | |
| GGTGATAATTGTTACCATCA+CGG | + | chr5_4:48066399-48066418 | None:intergenic | 35.0% | |
| GAAAGAAGTTGAGAGATTGA+AGG | - | chr5_4:48066550-48066569 | Msa0855030:intron | 35.0% | |
| CGAGATTAAAAGATTCAGTG+TGG | + | chr5_4:48066598-48066617 | None:intergenic | 35.0% | |
| AACATCCAGTTGCCATTATT+TGG | - | chr5_4:48066689-48066708 | Msa0855030:CDS | 35.0% | |
| GGACTTGACATTAGTAACAA+AGG | - | chr5_4:48066809-48066828 | Msa0855030:intron | 35.0% | |
| GGATAAGTTAGAAAGTCAAG+TGG | + | chr5_4:48066911-48066930 | None:intergenic | 35.0% | |
| GATGATACAAATGAACAGAG+GGG | + | chr5_4:48067122-48067141 | None:intergenic | 35.0% | |
| TTCATTGACACTCCAATTCA+TGG | - | chr5_4:48067189-48067208 | Msa0855030:CDS | 35.0% | |
| TCATTGACACTCCAATTCAT+GGG | - | chr5_4:48067190-48067209 | Msa0855030:CDS | 35.0% | |
| ACAATCGGATTGTACAACTA+TGG | + | chr5_4:48067260-48067279 | None:intergenic | 35.0% | |
| AGTTGTACAATCCGATTGTT+TGG | - | chr5_4:48067261-48067280 | Msa0855030:exon | 35.0% | |
| GTTGTACAATCCGATTGTTT+GGG | - | chr5_4:48067262-48067281 | Msa0855030:exon | 35.0% | |
| TTGTACAATCCGATTGTTTG+GGG | - | chr5_4:48067263-48067282 | Msa0855030:exon | 35.0% | |
| GCTTAACAGTTTACTATAGC+AGG | + | chr5_4:48067292-48067311 | None:intergenic | 35.0% | |
| TATACATGAACTAGAACGCA+AGG | - | chr5_4:48065840-48065859 | Msa0855030:three_prime_UTR | 35.0% | |
| GATAAATGTCAACACAAACC+TGG | + | chr5_4:48065918-48065937 | None:intergenic | 35.0% | |
| ACATAATCACTTCGGTGATT+TGG | - | chr5_4:48066164-48066183 | Msa0855030:CDS | 35.0% | |
| CATAATCACTTCGGTGATTT+GGG | - | chr5_4:48066165-48066184 | Msa0855030:CDS | 35.0% | |
| GGTGATAATTGTTACCATCA+CGG | + | chr5_4:48066399-48066418 | None:intergenic | 35.0% | |
| GAAAGAAGTTGAGAGATTGA+AGG | - | chr5_4:48066550-48066569 | Msa0855030:intron | 35.0% | |
| CGAGATTAAAAGATTCAGTG+TGG | + | chr5_4:48066598-48066617 | None:intergenic | 35.0% | |
| AACATCCAGTTGCCATTATT+TGG | - | chr5_4:48066689-48066708 | Msa0855030:CDS | 35.0% | |
| GGACTTGACATTAGTAACAA+AGG | - | chr5_4:48066809-48066828 | Msa0855030:intron | 35.0% | |
| GGATAAGTTAGAAAGTCAAG+TGG | + | chr5_4:48066911-48066930 | None:intergenic | 35.0% | |
| GATGATACAAATGAACAGAG+GGG | + | chr5_4:48067122-48067141 | None:intergenic | 35.0% | |
| TTCATTGACACTCCAATTCA+TGG | - | chr5_4:48067189-48067208 | Msa0855030:CDS | 35.0% | |
| TCATTGACACTCCAATTCAT+GGG | - | chr5_4:48067190-48067209 | Msa0855030:CDS | 35.0% | |
| ACAATCGGATTGTACAACTA+TGG | + | chr5_4:48067260-48067279 | None:intergenic | 35.0% | |
| AGTTGTACAATCCGATTGTT+TGG | - | chr5_4:48067261-48067280 | Msa0855030:exon | 35.0% | |
| GTTGTACAATCCGATTGTTT+GGG | - | chr5_4:48067262-48067281 | Msa0855030:exon | 35.0% | |
| TTGTACAATCCGATTGTTTG+GGG | - | chr5_4:48067263-48067282 | Msa0855030:exon | 35.0% | |
| GCTTAACAGTTTACTATAGC+AGG | + | chr5_4:48067292-48067311 | None:intergenic | 35.0% | |
| TGCTCGTTCAAAAGAGAGAA+AGG | - | chr5_4:48065810-48065829 | Msa0855030:three_prime_UTR | 40.0% | |
| AGTTGTAGCTTCAGTCTGTA+GGG | + | chr5_4:48065872-48065891 | None:intergenic | 40.0% | |
| AACCTGGTATAGTGTCAGTT+GGG | + | chr5_4:48065902-48065921 | None:intergenic | 40.0% | |
| AAACCTGGTATAGTGTCAGT+TGG | + | chr5_4:48065903-48065922 | None:intergenic | 40.0% | |
| GAACAAGGAAATAAGGCTCA+AGG | + | chr5_4:48066051-48066070 | None:intergenic | 40.0% | |
| TTATTGTAGCGAGACACAAC+AGG | - | chr5_4:48066310-48066329 | Msa0855030:CDS | 40.0% | |
| ATAATGGCAACTGGATGTTC+CGG | + | chr5_4:48066688-48066707 | None:intergenic | 40.0% | |
| AGTGACCAAATAATGGCAAC+TGG | + | chr5_4:48066697-48066716 | None:intergenic | 40.0% | |
| TGCAGAAAGAGAAGGATCTT+CGG | + | chr5_4:48066852-48066871 | None:intergenic | 40.0% | |
| AAGAACTCTAGCCCATGAAT+TGG | + | chr5_4:48067204-48067223 | None:intergenic | 40.0% | |
| TGCTCGTTCAAAAGAGAGAA+AGG | - | chr5_4:48065810-48065829 | Msa0855030:three_prime_UTR | 40.0% | |
| AGTTGTAGCTTCAGTCTGTA+GGG | + | chr5_4:48065872-48065891 | None:intergenic | 40.0% | |
| AACCTGGTATAGTGTCAGTT+GGG | + | chr5_4:48065902-48065921 | None:intergenic | 40.0% | |
| AAACCTGGTATAGTGTCAGT+TGG | + | chr5_4:48065903-48065922 | None:intergenic | 40.0% | |
| GAACAAGGAAATAAGGCTCA+AGG | + | chr5_4:48066051-48066070 | None:intergenic | 40.0% | |
| TTATTGTAGCGAGACACAAC+AGG | - | chr5_4:48066310-48066329 | Msa0855030:CDS | 40.0% | |
| ATAATGGCAACTGGATGTTC+CGG | + | chr5_4:48066688-48066707 | None:intergenic | 40.0% | |
| AGTGACCAAATAATGGCAAC+TGG | + | chr5_4:48066697-48066716 | None:intergenic | 40.0% | |
| TGCAGAAAGAGAAGGATCTT+CGG | + | chr5_4:48066852-48066871 | None:intergenic | 40.0% | |
| AAGAACTCTAGCCCATGAAT+TGG | + | chr5_4:48067204-48067223 | None:intergenic | 40.0% | |
| GAGTTGTAGCTTCAGTCTGT+AGG | + | chr5_4:48065873-48065892 | None:intergenic | 45.0% | |
| GAGAGATTGAAGGTTGCTAC+TGG | - | chr5_4:48066560-48066579 | Msa0855030:intron | 45.0% | |
| GATGGGGAGTGACCAAATAA+TGG | + | chr5_4:48066704-48066723 | None:intergenic | 45.0% | |
| ATGAGATGGCATGCTAGATG+GGG | + | chr5_4:48066720-48066739 | None:intergenic | 45.0% | |
| GATGAGATGGCATGCTAGAT+GGG | + | chr5_4:48066721-48066740 | None:intergenic | 45.0% | |
| TGATGAGATGGCATGCTAGA+TGG | + | chr5_4:48066722-48066741 | None:intergenic | 45.0% | |
| !! | GTTTGGTGCAGTTGATGAGA+TGG | + | chr5_4:48066734-48066753 | None:intergenic | 45.0% |
| !! | TGACCAGATTGGTCGTTTTC+AGG | - | chr5_4:48066787-48066806 | Msa0855030:intron | 45.0% |
| !! | GACCAGATTGGTCGTTTTCA+GGG | - | chr5_4:48066788-48066807 | Msa0855030:intron | 45.0% |
| CTCTCACTTGCAGAAAGAGA+AGG | + | chr5_4:48066860-48066879 | None:intergenic | 45.0% | |
| !! | GAAGTACATGTGTTGACTGG+AGG | + | chr5_4:48066960-48066979 | None:intergenic | 45.0% |
| ! | CCTGAAGTACATGTGTTGAC+TGG | + | chr5_4:48066963-48066982 | None:intergenic | 45.0% |
| CCAGTCAACACATGTACTTC+AGG | - | chr5_4:48066960-48066979 | Msa0855030:intron | 45.0% | |
| AACTTCGCAGCAAAACCCTA+CGG | + | chr5_4:48067060-48067079 | None:intergenic | 45.0% | |
| AGCAGGTAACCCCAAACAAT+CGG | + | chr5_4:48067275-48067294 | None:intergenic | 45.0% | |
| GAGTTGTAGCTTCAGTCTGT+AGG | + | chr5_4:48065873-48065892 | None:intergenic | 45.0% | |
| GAGAGATTGAAGGTTGCTAC+TGG | - | chr5_4:48066560-48066579 | Msa0855030:intron | 45.0% | |
| GATGGGGAGTGACCAAATAA+TGG | + | chr5_4:48066704-48066723 | None:intergenic | 45.0% | |
| ATGAGATGGCATGCTAGATG+GGG | + | chr5_4:48066720-48066739 | None:intergenic | 45.0% | |
| GATGAGATGGCATGCTAGAT+GGG | + | chr5_4:48066721-48066740 | None:intergenic | 45.0% | |
| TGATGAGATGGCATGCTAGA+TGG | + | chr5_4:48066722-48066741 | None:intergenic | 45.0% | |
| !! | GTTTGGTGCAGTTGATGAGA+TGG | + | chr5_4:48066734-48066753 | None:intergenic | 45.0% |
| !! | TGACCAGATTGGTCGTTTTC+AGG | - | chr5_4:48066787-48066806 | Msa0855030:intron | 45.0% |
| !! | GACCAGATTGGTCGTTTTCA+GGG | - | chr5_4:48066788-48066807 | Msa0855030:intron | 45.0% |
| CTCTCACTTGCAGAAAGAGA+AGG | + | chr5_4:48066860-48066879 | None:intergenic | 45.0% | |
| !! | GAAGTACATGTGTTGACTGG+AGG | + | chr5_4:48066960-48066979 | None:intergenic | 45.0% |
| ! | CCTGAAGTACATGTGTTGAC+TGG | + | chr5_4:48066963-48066982 | None:intergenic | 45.0% |
| CCAGTCAACACATGTACTTC+AGG | - | chr5_4:48066960-48066979 | Msa0855030:intron | 45.0% | |
| AACTTCGCAGCAAAACCCTA+CGG | + | chr5_4:48067060-48067079 | None:intergenic | 45.0% | |
| AGCAGGTAACCCCAAACAAT+CGG | + | chr5_4:48067275-48067294 | None:intergenic | 45.0% | |
| TGCCCAACTGACACTATACC+AGG | - | chr5_4:48065897-48065916 | Msa0855030:three_prime_UTR | 50.0% | |
| ! | GAGATGTGCTTGTTGCTCCA+TGG | + | chr5_4:48066377-48066396 | None:intergenic | 50.0% |
| CAACAAGCACATCTCCGTGA+TGG | - | chr5_4:48066382-48066401 | Msa0855030:CDS | 50.0% | |
| TACGCTCCAATTCCACCACA+AGG | - | chr5_4:48066650-48066669 | Msa0855030:CDS | 50.0% | |
| ! | GAAGGACCTTGTGGTGGAAT+TGG | + | chr5_4:48066659-48066678 | None:intergenic | 50.0% |
| ATTCCACCACAAGGTCCTTC+TGG | - | chr5_4:48066659-48066678 | Msa0855030:CDS | 50.0% | |
| GTCCCTGAAAACGACCAATC+TGG | + | chr5_4:48066793-48066812 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGCTCGCCAAAAA+GGG | - | chr5_4:48067027-48067046 | Msa0855030:intron | 50.0% |
| !! | AAAAAGGGGAAGCACCCGTA+GGG | - | chr5_4:48067042-48067061 | Msa0855030:intron | 50.0% |
| ACTTCGCAGCAAAACCCTAC+GGG | + | chr5_4:48067059-48067078 | None:intergenic | 50.0% | |
| TGCCCAACTGACACTATACC+AGG | - | chr5_4:48065897-48065916 | Msa0855030:three_prime_UTR | 50.0% | |
| ! | GAGATGTGCTTGTTGCTCCA+TGG | + | chr5_4:48066377-48066396 | None:intergenic | 50.0% |
| CAACAAGCACATCTCCGTGA+TGG | - | chr5_4:48066382-48066401 | Msa0855030:CDS | 50.0% | |
| TACGCTCCAATTCCACCACA+AGG | - | chr5_4:48066650-48066669 | Msa0855030:CDS | 50.0% | |
| ! | GAAGGACCTTGTGGTGGAAT+TGG | + | chr5_4:48066659-48066678 | None:intergenic | 50.0% |
| ATTCCACCACAAGGTCCTTC+TGG | - | chr5_4:48066659-48066678 | Msa0855030:CDS | 50.0% | |
| GTCCCTGAAAACGACCAATC+TGG | + | chr5_4:48066793-48066812 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGCTCGCCAAAAA+GGG | - | chr5_4:48067027-48067046 | Msa0855030:intron | 50.0% |
| !! | AAAAAGGGGAAGCACCCGTA+GGG | - | chr5_4:48067042-48067061 | Msa0855030:intron | 50.0% |
| ACTTCGCAGCAAAACCCTAC+GGG | + | chr5_4:48067059-48067078 | None:intergenic | 50.0% | |
| TAAGCTCCGTCTGCAAGCCA+TGG | - | chr5_4:48066357-48066376 | Msa0855030:CDS | 55.0% | |
| ! | GTTGCTCCATGGCTTGCAGA+CGG | + | chr5_4:48066366-48066385 | None:intergenic | 55.0% |
| TGACCAGAAGGACCTTGTGG+TGG | + | chr5_4:48066665-48066684 | None:intergenic | 55.0% | |
| CACAAGGTCCTTCTGGTCAC+CGG | - | chr5_4:48066666-48066685 | Msa0855030:CDS | 55.0% | |
| TGGATGTTCCGGTGACCAGA+AGG | + | chr5_4:48066677-48066696 | None:intergenic | 55.0% | |
| !! | CTTTGGGGTGCTCGCCAAAA+AGG | - | chr5_4:48067026-48067045 | Msa0855030:intron | 55.0% |
| ! | TTGGGGTGCTCGCCAAAAAG+GGG | - | chr5_4:48067028-48067047 | Msa0855030:intron | 55.0% |
| ! | CTACGGGTGCTTCCCCTTTT+TGG | + | chr5_4:48067043-48067062 | None:intergenic | 55.0% |
| !! | CAAAAAGGGGAAGCACCCGT+AGG | - | chr5_4:48067041-48067060 | Msa0855030:intron | 55.0% |
| TAAGCTCCGTCTGCAAGCCA+TGG | - | chr5_4:48066357-48066376 | Msa0855030:CDS | 55.0% | |
| ! | GTTGCTCCATGGCTTGCAGA+CGG | + | chr5_4:48066366-48066385 | None:intergenic | 55.0% |
| TGACCAGAAGGACCTTGTGG+TGG | + | chr5_4:48066665-48066684 | None:intergenic | 55.0% | |
| CACAAGGTCCTTCTGGTCAC+CGG | - | chr5_4:48066666-48066685 | Msa0855030:CDS | 55.0% | |
| TGGATGTTCCGGTGACCAGA+AGG | + | chr5_4:48066677-48066696 | None:intergenic | 55.0% | |
| !! | CTTTGGGGTGCTCGCCAAAA+AGG | - | chr5_4:48067026-48067045 | Msa0855030:intron | 55.0% |
| ! | TTGGGGTGCTCGCCAAAAAG+GGG | - | chr5_4:48067028-48067047 | Msa0855030:intron | 55.0% |
| ! | CTACGGGTGCTTCCCCTTTT+TGG | + | chr5_4:48067043-48067062 | None:intergenic | 55.0% |
| !! | CAAAAAGGGGAAGCACCCGT+AGG | - | chr5_4:48067041-48067060 | Msa0855030:intron | 55.0% |
| CGGTGACCAGAAGGACCTTG+TGG | + | chr5_4:48066668-48066687 | None:intergenic | 60.0% | |
| CGGTGACCAGAAGGACCTTG+TGG | + | chr5_4:48066668-48066687 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48065734 | 48067318 | 48065734 | ID=Msa0855030;Name=Msa0855030 |
| chr5_4 | mRNA | 48065734 | 48067318 | 48065734 | ID=Msa0855030-mRNA-1;Parent=Msa0855030;Name=Msa0855030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=44|1|1|1|1|1|3|423|196 |
| chr5_4 | exon | 48065734 | 48066521 | 48065734 | ID=Msa0855030-mRNA-1:exon:15158;Parent=Msa0855030-mRNA-1 |
| chr5_4 | exon | 48066649 | 48066733 | 48066649 | ID=Msa0855030-mRNA-1:exon:15157;Parent=Msa0855030-mRNA-1 |
| chr5_4 | exon | 48067134 | 48067318 | 48067134 | ID=Msa0855030-mRNA-1:exon:15156;Parent=Msa0855030-mRNA-1 |
| chr5_4 | five_prime_UTR | 48067275 | 48067318 | 48067275 | ID=Msa0855030-mRNA-1:five_prime_utr;Parent=Msa0855030-mRNA-1 |
| chr5_4 | CDS | 48067134 | 48067274 | 48067134 | ID=Msa0855030-mRNA-1:cds;Parent=Msa0855030-mRNA-1 |
| chr5_4 | CDS | 48066649 | 48066733 | 48066649 | ID=Msa0855030-mRNA-1:cds;Parent=Msa0855030-mRNA-1 |
| chr5_4 | CDS | 48066157 | 48066521 | 48066157 | ID=Msa0855030-mRNA-1:cds;Parent=Msa0855030-mRNA-1 |
| chr5_4 | three_prime_UTR | 48065734 | 48066156 | 48065734 | ID=Msa0855030-mRNA-1:three_prime_utr;Parent=Msa0855030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
