AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855240 MtrunA17_Chr5g0432941 86.784 227 19 6 1 219 1 224 6.06e-135 377
Msa0855240 MtrunA17_Chr5g0432921 84.071 226 27 5 1 219 1 224 1.28e-130 367
Msa0855240 MtrunA17_Chr1g0192061 50.000 142 53 2 70 209 19 144 3.82e-37 128
Msa0855240 MtrunA17_Chr1g0210471 38.624 189 101 6 20 196 23 208 3.74e-32 117
Msa0855240 MtrunA17_Chr1g0162081 38.860 193 90 10 18 186 9 197 1.21e-29 111
Msa0855240 MtrunA17_Chr8g0365011 36.702 188 95 8 15 186 2 181 1.63e-24 97.8
Msa0855240 MtrunA17_Chr7g0241761 34.597 211 111 11 7 196 21 225 1.75e-22 93.2
Msa0855240 MtrunA17_Chr3g0104071 36.747 166 85 7 12 160 34 196 8.34e-22 91.3
Msa0855240 MtrunA17_Chr5g0429521 32.292 192 104 8 7 179 15 199 1.54e-20 87.8
Msa0855240 MtrunA17_Chr4g0062741 30.493 223 105 11 21 195 8 228 3.81e-20 86.7
Msa0855240 MtrunA17_Chr5g0436501 30.808 198 119 7 20 207 26 215 7.22e-18 79.7
Msa0855240 MtrunA17_Chr5g0409841 48.837 86 41 2 113 195 93 178 2.95e-16 74.7
Msa0855240 MtrunA17_Chr5g0440731 41.346 104 54 4 97 195 92 193 1.95e-15 73.6
Msa0855240 MtrunA17_Chr5g0440741 45.455 88 43 3 113 195 101 188 9.04e-15 71.6
Msa0855240 MtrunA17_Chr5g0409831 42.169 83 44 3 78 159 46 125 7.71e-13 65.5
Msa0855240 MtrunA17_Chr4g0059701 43.421 76 39 2 86 157 55 130 8.39e-13 65.9
Msa0855240 MtrunA17_Chr4g0055931 37.000 100 59 3 81 178 64 161 9.74e-13 66.2
Msa0855240 MtrunA17_Chr2g0331031 42.466 73 39 2 103 174 100 170 2.49e-12 65.1
Msa0855240 MtrunA17_Chr6g0452791 57.143 49 20 1 114 161 82 130 5.82e-12 62.0
Msa0855240 MtrunA17_Chr5g0415191 43.421 76 31 2 84 158 85 149 6.32e-12 63.5
Msa0855240 MtrunA17_Chr8g0389241 45.205 73 37 2 114 185 107 177 7.10e-12 63.2
Msa0855240 MtrunA17_Chr3g0135671 57.692 52 21 1 114 164 93 144 8.42e-12 62.4
Msa0855240 MtrunA17_Chr6g0488471 51.613 62 27 2 114 174 99 158 1.63e-11 62.4
Msa0855240 MtrunA17_Chr8g0364741 36.283 113 63 4 16 121 5 115 4.74e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855240 AT5G04760.1 36.757 185 87 5 18 186 3 173 3.24e-26 101
Msa0855240 AT5G08520.1 35.754 179 90 7 21 179 12 185 3.10e-24 97.8
Msa0855240 AT3G10580.2 37.333 150 87 3 21 168 8 152 5.93e-23 93.6
Msa0855240 AT3G10580.1 37.333 150 87 3 21 168 8 152 9.90e-23 93.6
Msa0855240 AT5G23650.1 36.158 177 92 6 9 166 1 175 8.89e-21 89.0
Msa0855240 AT2G38090.1 31.132 212 107 10 10 197 18 214 2.90e-20 87.0
Msa0855240 AT4G09450.1 37.762 143 79 4 20 160 6 140 1.64e-19 83.2
Msa0855240 AT5G01200.1 31.683 202 109 7 5 179 14 213 2.33e-19 84.3
Msa0855240 AT5G58900.1 32.086 187 97 7 16 179 29 208 2.73e-19 84.3
Msa0855240 AT1G49010.1 30.457 197 96 8 21 179 8 201 3.18e-18 81.6
Msa0855240 AT5G05790.2 31.902 163 93 3 17 165 27 185 9.27e-18 80.1
Msa0855240 AT5G05790.1 31.902 163 93 3 17 165 27 185 9.27e-18 80.1
Msa0855240 AT3G11280.2 33.333 150 94 4 21 165 33 181 8.80e-17 77.0
Msa0855240 AT3G11280.1 33.333 150 94 4 21 165 33 181 8.80e-17 77.0
Msa0855240 AT5G47390.1 37.288 118 52 5 84 194 79 181 3.34e-15 73.9
Msa0855240 AT3G10590.1 29.050 179 105 6 16 177 2 175 6.12e-13 65.5
Msa0855240 AT1G70000.1 53.571 56 25 1 104 158 90 145 1.30e-12 65.5
Msa0855240 AT1G70000.2 53.571 56 25 1 104 158 90 145 1.30e-12 65.5
Msa0855240 AT5G61620.1 43.529 85 45 2 108 191 104 186 8.86e-11 60.8

Find 44 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATTTCCTTCACCAAAA+TGG 0.297505 5_4:+48412137 Msa0855240:CDS
TTGAATTTCAACATTTAATT+CGG 0.308654 5_4:-48412326 None:intergenic
TTCTTAGTCTTATTCTTAGT+TGG 0.323967 5_4:-48411555 None:intergenic
AGATTCATAAGAAGGGAAAT+TGG 0.369394 5_4:+48412054 Msa0855240:CDS
GTCCTTACTGAGAAGAGGTT+TGG 0.374736 5_4:-48412225 None:intergenic
TTAGTCTTATTCTTAGTTGG+AGG 0.415408 5_4:-48411552 None:intergenic
GAAAATCTTGCTCTTGTTTG+CGG 0.422028 5_4:+48411387 Msa0855240:CDS
ATAAAATCATCTGAGTTTGT+TGG 0.441615 5_4:-48411492 None:intergenic
CTTCAACATTACCTCATTGA+AGG 0.462445 5_4:+48412193 Msa0855240:CDS
GGGAATCGAGATTCATAAGA+AGG 0.470381 5_4:+48412046 Msa0855240:CDS
ATGAACTACACAAATAATGA+TGG 0.488615 5_4:+48411276 Msa0855240:CDS
TCCCATGAGGTAGGAGGAGA+TGG 0.491481 5_4:-48412254 None:intergenic
CTCAAGATATTCAAAGAGAA+TGG 0.491655 5_4:-48411343 None:intergenic
GCATGGCTAGCACATTGACT+TGG 0.494579 5_4:-48412110 None:intergenic
TTCAACATTTAATTCGGATG+AGG 0.495392 5_4:-48412320 None:intergenic
TATTTGTGTAGTTCATATGT+TGG 0.507032 5_4:-48411269 None:intergenic
CTAAGAAAGTGGTGAAACAT+TGG 0.507701 5_4:+48411571 Msa0855240:CDS
TTCCATCTCCTCCTACCTCA+TGG 0.508016 5_4:+48412252 Msa0855240:CDS
GGATGAGGATAAAGAAGAGC+TGG 0.516096 5_4:-48412305 None:intergenic
TTCCAAACCTCTTCTCAGTA+AGG 0.524962 5_4:+48412223 Msa0855240:CDS
TAAGAATAAGACTAAGAAAG+TGG 0.531612 5_4:+48411560 Msa0855240:CDS
TTCAACATTACCTCATTGAA+GGG 0.537386 5_4:+48412194 Msa0855240:CDS
GAGCTGGAACATAGAGAAGA+GGG 0.552512 5_4:-48412289 None:intergenic
TCCATCTCCTCCTACCTCAT+GGG 0.558700 5_4:+48412253 Msa0855240:CDS
AGGAAGTACAAGAAGGTCGA+TGG 0.560186 5_4:+48411364 Msa0855240:CDS
ATGTTGTCCTTACTGAGAAG+AGG 0.560674 5_4:-48412230 None:intergenic
CATTCTCTTTGAATATCTTG+AGG 0.571841 5_4:+48411344 Msa0855240:CDS
GAAAATCAAAGGAGTGGACA+TGG 0.573641 5_4:+48411298 Msa0855240:CDS
GGAATCGAGATTCATAAGAA+GGG 0.583688 5_4:+48412047 Msa0855240:CDS
AAATAATGATGGAAAATCAA+AGG 0.595595 5_4:+48411287 Msa0855240:CDS
TCTCCTCCTACCTCATGGGA+TGG 0.596171 5_4:+48412257 Msa0855240:CDS
AGAGCTGGAACATAGAGAAG+AGG 0.602888 5_4:-48412290 None:intergenic
GCATGACTTAGCACTCATTG+AGG 0.603466 5_4:+48411452 Msa0855240:CDS
GACTTAGCACTCATTGAGGA+AGG 0.612605 5_4:+48411456 Msa0855240:CDS
ATGATGGAAAATCAAAGGAG+TGG 0.613850 5_4:+48411292 Msa0855240:CDS
TTTCCATCCCATGAGGTAGG+AGG 0.614524 5_4:-48412260 None:intergenic
TATCTTGAGGAAGTACAAGA+AGG 0.618040 5_4:+48411357 Msa0855240:CDS
GGAATGATCTCCCTTCAATG+AGG 0.623973 5_4:-48412204 None:intergenic
AAATTTCCATCCCATGAGGT+AGG 0.632795 5_4:-48412263 None:intergenic
CTGGAACATAGAGAAGAGGG+TGG 0.633901 5_4:-48412286 None:intergenic
GGAAGTACAAGAAGGTCGAT+GGG 0.635752 5_4:+48411365 Msa0855240:CDS
AAAATCAAAGGAGTGGACAT+GGG 0.673138 5_4:+48411299 Msa0855240:CDS
ATTGGAGTGAAGAAGAACAC+AGG 0.701675 5_4:+48411589 Msa0855240:CDS
GTGGAAATTTCCATCCCATG+AGG 0.722495 5_4:-48412267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTGTTGATAAA+AGG - chr5_4:48411805-48411824 None:intergenic 10.0%
!!! TTTTATCAACAAATAAAAAA+AGG + chr5_4:48411804-48411823 Msa0855240:intron 10.0%
!! TTTATCAACAAATAAAAAAA+GGG + chr5_4:48411805-48411824 Msa0855240:intron 10.0%
!!! TTTTTTTATTTGTTGATAAA+AGG - chr5_4:48411805-48411824 None:intergenic 10.0%
!!! TTTTATCAACAAATAAAAAA+AGG + chr5_4:48411804-48411823 Msa0855240:intron 10.0%
!! TTTATCAACAAATAAAAAAA+GGG + chr5_4:48411805-48411824 Msa0855240:intron 10.0%
!!! TTTACTAATTTCTCTTTTTA+CGG - chr5_4:48411707-48411726 None:intergenic 15.0%
!!! AGTCAATTTAATTTATATCA+TGG - chr5_4:48411991-48412010 None:intergenic 15.0%
!!! TTTACTAATTTCTCTTTTTA+CGG - chr5_4:48411707-48411726 None:intergenic 15.0%
!!! AGTCAATTTAATTTATATCA+TGG - chr5_4:48411991-48412010 None:intergenic 15.0%
!!! AAATAATGATGGAAAATCAA+AGG + chr5_4:48411287-48411306 Msa0855240:CDS 20.0%
!!! TTTCTTTTGAATCCAATTTA+AGG - chr5_4:48411876-48411895 None:intergenic 20.0%
!! TTAAATTGGATTCAAAAGAA+AGG + chr5_4:48411875-48411894 Msa0855240:intron 20.0%
!!! TTTTTATAGGTTATTTGTAG+AGG + chr5_4:48412025-48412044 Msa0855240:intron 20.0%
!!! TTTTATAGGTTATTTGTAGA+GGG + chr5_4:48412026-48412045 Msa0855240:intron 20.0%
!!! AAATAATGATGGAAAATCAA+AGG + chr5_4:48411287-48411306 Msa0855240:CDS 20.0%
!!! TTTCTTTTGAATCCAATTTA+AGG - chr5_4:48411876-48411895 None:intergenic 20.0%
!! TTAAATTGGATTCAAAAGAA+AGG + chr5_4:48411875-48411894 Msa0855240:intron 20.0%
!!! TTTTTATAGGTTATTTGTAG+AGG + chr5_4:48412025-48412044 Msa0855240:intron 20.0%
!!! TTTTATAGGTTATTTGTAGA+GGG + chr5_4:48412026-48412045 Msa0855240:intron 20.0%
! TATTTGTGTAGTTCATATGT+TGG - chr5_4:48411272-48411291 None:intergenic 25.0%
! ATGAACTACACAAATAATGA+TGG + chr5_4:48411276-48411295 Msa0855240:CDS 25.0%
! ATAAAATCATCTGAGTTTGT+TGG - chr5_4:48411495-48411514 None:intergenic 25.0%
!!! TCAGATGATTTTATTTCGAA+AGG + chr5_4:48411501-48411520 Msa0855240:CDS 25.0%
!!! TTCTTAGTCTTATTCTTAGT+TGG - chr5_4:48411558-48411577 None:intergenic 25.0%
! TAAGAATAAGACTAAGAAAG+TGG + chr5_4:48411560-48411579 Msa0855240:CDS 25.0%
!! TTATTTTCTTCTTCTTCATG+TGG + chr5_4:48411655-48411674 Msa0855240:intron 25.0%
! TACTACCTTATTCCTTAAAT+TGG + chr5_4:48411861-48411880 Msa0855240:intron 25.0%
! TGAATCCAATTTAAGGAATA+AGG - chr5_4:48411869-48411888 None:intergenic 25.0%
! TTGACACTAACATATGTATT+GGG + chr5_4:48411944-48411963 Msa0855240:intron 25.0%
! CCTATAAAAAAAATGATGAG+AGG - chr5_4:48412015-48412034 None:intergenic 25.0%
!!! CCTCTCATCATTTTTTTTAT+AGG + chr5_4:48412012-48412031 Msa0855240:intron 25.0%
!!! TCTTTTTTGATGTACCATTT+TGG - chr5_4:48412154-48412173 None:intergenic 25.0%
! TATTTGTGTAGTTCATATGT+TGG - chr5_4:48411272-48411291 None:intergenic 25.0%
! ATGAACTACACAAATAATGA+TGG + chr5_4:48411276-48411295 Msa0855240:CDS 25.0%
! ATAAAATCATCTGAGTTTGT+TGG - chr5_4:48411495-48411514 None:intergenic 25.0%
!!! TCAGATGATTTTATTTCGAA+AGG + chr5_4:48411501-48411520 Msa0855240:CDS 25.0%
!!! TTCTTAGTCTTATTCTTAGT+TGG - chr5_4:48411558-48411577 None:intergenic 25.0%
! TAAGAATAAGACTAAGAAAG+TGG + chr5_4:48411560-48411579 Msa0855240:CDS 25.0%
!! TTATTTTCTTCTTCTTCATG+TGG + chr5_4:48411655-48411674 Msa0855240:intron 25.0%
! TACTACCTTATTCCTTAAAT+TGG + chr5_4:48411861-48411880 Msa0855240:intron 25.0%
! TGAATCCAATTTAAGGAATA+AGG - chr5_4:48411869-48411888 None:intergenic 25.0%
! TTGACACTAACATATGTATT+GGG + chr5_4:48411944-48411963 Msa0855240:intron 25.0%
! CCTATAAAAAAAATGATGAG+AGG - chr5_4:48412015-48412034 None:intergenic 25.0%
!!! CCTCTCATCATTTTTTTTAT+AGG + chr5_4:48412012-48412031 Msa0855240:intron 25.0%
!!! TCTTTTTTGATGTACCATTT+TGG - chr5_4:48412154-48412173 None:intergenic 25.0%
CTCAAGATATTCAAAGAGAA+TGG - chr5_4:48411346-48411365 None:intergenic 30.0%
CATTCTCTTTGAATATCTTG+AGG + chr5_4:48411344-48411363 Msa0855240:CDS 30.0%
!! TTAGTCTTATTCTTAGTTGG+AGG - chr5_4:48411555-48411574 None:intergenic 30.0%
CTTGACACTAACATATGTAT+TGG + chr5_4:48411943-48411962 Msa0855240:intron 30.0%
AGATTCATAAGAAGGGAAAT+TGG + chr5_4:48412054-48412073 Msa0855240:CDS 30.0%
TTCAACATTACCTCATTGAA+GGG + chr5_4:48412194-48412213 Msa0855240:CDS 30.0%
CTCAAGATATTCAAAGAGAA+TGG - chr5_4:48411346-48411365 None:intergenic 30.0%
CATTCTCTTTGAATATCTTG+AGG + chr5_4:48411344-48411363 Msa0855240:CDS 30.0%
!! TTAGTCTTATTCTTAGTTGG+AGG - chr5_4:48411555-48411574 None:intergenic 30.0%
CTTGACACTAACATATGTAT+TGG + chr5_4:48411943-48411962 Msa0855240:intron 30.0%
AGATTCATAAGAAGGGAAAT+TGG + chr5_4:48412054-48412073 Msa0855240:CDS 30.0%
TTCAACATTACCTCATTGAA+GGG + chr5_4:48412194-48412213 Msa0855240:CDS 30.0%
! ATGATGGAAAATCAAAGGAG+TGG + chr5_4:48411292-48411311 Msa0855240:CDS 35.0%
AAAATCAAAGGAGTGGACAT+GGG + chr5_4:48411299-48411318 Msa0855240:CDS 35.0%
! TATCTTGAGGAAGTACAAGA+AGG + chr5_4:48411357-48411376 Msa0855240:CDS 35.0%
! GAAAATCTTGCTCTTGTTTG+CGG + chr5_4:48411387-48411406 Msa0855240:CDS 35.0%
CTAAGAAAGTGGTGAAACAT+TGG + chr5_4:48411571-48411590 Msa0855240:CDS 35.0%
! CTTTTATTCGAAGAACACCT+TGG + chr5_4:48411728-48411747 Msa0855240:intron 35.0%
!! ACACCTTGGTTTTTCTGAAA+AGG + chr5_4:48411742-48411761 Msa0855240:intron 35.0%
!! CACCTTGGTTTTTCTGAAAA+GGG + chr5_4:48411743-48411762 Msa0855240:intron 35.0%
GGAATCGAGATTCATAAGAA+GGG + chr5_4:48412047-48412066 Msa0855240:CDS 35.0%
AAGCATTTCCTTCACCAAAA+TGG + chr5_4:48412137-48412156 Msa0855240:CDS 35.0%
!! TTGATGTACCATTTTGGTGA+AGG - chr5_4:48412148-48412167 None:intergenic 35.0%
CTTCAACATTACCTCATTGA+AGG + chr5_4:48412193-48412212 Msa0855240:CDS 35.0%
! ATGATGGAAAATCAAAGGAG+TGG + chr5_4:48411292-48411311 Msa0855240:CDS 35.0%
AAAATCAAAGGAGTGGACAT+GGG + chr5_4:48411299-48411318 Msa0855240:CDS 35.0%
! TATCTTGAGGAAGTACAAGA+AGG + chr5_4:48411357-48411376 Msa0855240:CDS 35.0%
! GAAAATCTTGCTCTTGTTTG+CGG + chr5_4:48411387-48411406 Msa0855240:CDS 35.0%
CTAAGAAAGTGGTGAAACAT+TGG + chr5_4:48411571-48411590 Msa0855240:CDS 35.0%
! CTTTTATTCGAAGAACACCT+TGG + chr5_4:48411728-48411747 Msa0855240:intron 35.0%
!! ACACCTTGGTTTTTCTGAAA+AGG + chr5_4:48411742-48411761 Msa0855240:intron 35.0%
!! CACCTTGGTTTTTCTGAAAA+GGG + chr5_4:48411743-48411762 Msa0855240:intron 35.0%
GGAATCGAGATTCATAAGAA+GGG + chr5_4:48412047-48412066 Msa0855240:CDS 35.0%
AAGCATTTCCTTCACCAAAA+TGG + chr5_4:48412137-48412156 Msa0855240:CDS 35.0%
!! TTGATGTACCATTTTGGTGA+AGG - chr5_4:48412148-48412167 None:intergenic 35.0%
CTTCAACATTACCTCATTGA+AGG + chr5_4:48412193-48412212 Msa0855240:CDS 35.0%
GAAAATCAAAGGAGTGGACA+TGG + chr5_4:48411298-48411317 Msa0855240:CDS 40.0%
ATTGGAGTGAAGAAGAACAC+AGG + chr5_4:48411589-48411608 Msa0855240:CDS 40.0%
! GTCCCTTTTCAGAAAAACCA+AGG - chr5_4:48411748-48411767 None:intergenic 40.0%
GGGAATCGAGATTCATAAGA+AGG + chr5_4:48412046-48412065 Msa0855240:CDS 40.0%
! GAAGGAAATGCTTTTGAGCA+TGG - chr5_4:48412130-48412149 None:intergenic 40.0%
TTCCAAACCTCTTCTCAGTA+AGG + chr5_4:48412223-48412242 Msa0855240:CDS 40.0%
ATGTTGTCCTTACTGAGAAG+AGG - chr5_4:48412233-48412252 None:intergenic 40.0%
AAATTTCCATCCCATGAGGT+AGG - chr5_4:48412266-48412285 None:intergenic 40.0%
GAAAATCAAAGGAGTGGACA+TGG + chr5_4:48411298-48411317 Msa0855240:CDS 40.0%
ATTGGAGTGAAGAAGAACAC+AGG + chr5_4:48411589-48411608 Msa0855240:CDS 40.0%
! GTCCCTTTTCAGAAAAACCA+AGG - chr5_4:48411748-48411767 None:intergenic 40.0%
GGGAATCGAGATTCATAAGA+AGG + chr5_4:48412046-48412065 Msa0855240:CDS 40.0%
! GAAGGAAATGCTTTTGAGCA+TGG - chr5_4:48412130-48412149 None:intergenic 40.0%
TTCCAAACCTCTTCTCAGTA+AGG + chr5_4:48412223-48412242 Msa0855240:CDS 40.0%
ATGTTGTCCTTACTGAGAAG+AGG - chr5_4:48412233-48412252 None:intergenic 40.0%
AAATTTCCATCCCATGAGGT+AGG - chr5_4:48412266-48412285 None:intergenic 40.0%
! AGGAAGTACAAGAAGGTCGA+TGG + chr5_4:48411364-48411383 Msa0855240:CDS 45.0%
! GGAAGTACAAGAAGGTCGAT+GGG + chr5_4:48411365-48411384 Msa0855240:CDS 45.0%
GCATGACTTAGCACTCATTG+AGG + chr5_4:48411452-48411471 Msa0855240:CDS 45.0%
GACTTAGCACTCATTGAGGA+AGG + chr5_4:48411456-48411475 Msa0855240:CDS 45.0%
CGGAATTCACACCATGCATA+AGG - chr5_4:48411687-48411706 None:intergenic 45.0%
GGAATGATCTCCCTTCAATG+AGG - chr5_4:48412207-48412226 None:intergenic 45.0%
GTCCTTACTGAGAAGAGGTT+TGG - chr5_4:48412228-48412247 None:intergenic 45.0%
GTGGAAATTTCCATCCCATG+AGG - chr5_4:48412270-48412289 None:intergenic 45.0%
GAGCTGGAACATAGAGAAGA+GGG - chr5_4:48412292-48412311 None:intergenic 45.0%
AGAGCTGGAACATAGAGAAG+AGG - chr5_4:48412293-48412312 None:intergenic 45.0%
GGATGAGGATAAAGAAGAGC+TGG - chr5_4:48412308-48412327 None:intergenic 45.0%
! AGGAAGTACAAGAAGGTCGA+TGG + chr5_4:48411364-48411383 Msa0855240:CDS 45.0%
! GGAAGTACAAGAAGGTCGAT+GGG + chr5_4:48411365-48411384 Msa0855240:CDS 45.0%
GCATGACTTAGCACTCATTG+AGG + chr5_4:48411452-48411471 Msa0855240:CDS 45.0%
GACTTAGCACTCATTGAGGA+AGG + chr5_4:48411456-48411475 Msa0855240:CDS 45.0%
CGGAATTCACACCATGCATA+AGG - chr5_4:48411687-48411706 None:intergenic 45.0%
GGAATGATCTCCCTTCAATG+AGG - chr5_4:48412207-48412226 None:intergenic 45.0%
GTCCTTACTGAGAAGAGGTT+TGG - chr5_4:48412228-48412247 None:intergenic 45.0%
GTGGAAATTTCCATCCCATG+AGG - chr5_4:48412270-48412289 None:intergenic 45.0%
GAGCTGGAACATAGAGAAGA+GGG - chr5_4:48412292-48412311 None:intergenic 45.0%
AGAGCTGGAACATAGAGAAG+AGG - chr5_4:48412293-48412312 None:intergenic 45.0%
GGATGAGGATAAAGAAGAGC+TGG - chr5_4:48412308-48412327 None:intergenic 45.0%
TGTGGACGAGTCCTTATGCA+TGG + chr5_4:48411673-48411692 Msa0855240:intron 50.0%
! GCATGGCTAGCACATTGACT+TGG - chr5_4:48412113-48412132 None:intergenic 50.0%
TTCCATCTCCTCCTACCTCA+TGG + chr5_4:48412252-48412271 Msa0855240:CDS 50.0%
TCCATCTCCTCCTACCTCAT+GGG + chr5_4:48412253-48412272 Msa0855240:CDS 50.0%
TTTCCATCCCATGAGGTAGG+AGG - chr5_4:48412263-48412282 None:intergenic 50.0%
CTGGAACATAGAGAAGAGGG+TGG - chr5_4:48412289-48412308 None:intergenic 50.0%
TGTGGACGAGTCCTTATGCA+TGG + chr5_4:48411673-48411692 Msa0855240:intron 50.0%
! GCATGGCTAGCACATTGACT+TGG - chr5_4:48412113-48412132 None:intergenic 50.0%
TTCCATCTCCTCCTACCTCA+TGG + chr5_4:48412252-48412271 Msa0855240:CDS 50.0%
TCCATCTCCTCCTACCTCAT+GGG + chr5_4:48412253-48412272 Msa0855240:CDS 50.0%
TTTCCATCCCATGAGGTAGG+AGG - chr5_4:48412263-48412282 None:intergenic 50.0%
CTGGAACATAGAGAAGAGGG+TGG - chr5_4:48412289-48412308 None:intergenic 50.0%
TCCCATGAGGTAGGAGGAGA+TGG - chr5_4:48412257-48412276 None:intergenic 55.0%
TCTCCTCCTACCTCATGGGA+TGG + chr5_4:48412257-48412276 Msa0855240:CDS 55.0%
TCCCATGAGGTAGGAGGAGA+TGG - chr5_4:48412257-48412276 None:intergenic 55.0%
TCTCCTCCTACCTCATGGGA+TGG + chr5_4:48412257-48412276 Msa0855240:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 48411252 48412334 48411252 ID=Msa0855240;Name=Msa0855240
chr5_4 mRNA 48411252 48412334 48411252 ID=Msa0855240-mRNA-1;Parent=Msa0855240;Name=Msa0855240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|219
chr5_4 exon 48411252 48411610 48411252 ID=Msa0855240-mRNA-1:exon:15259;Parent=Msa0855240-mRNA-1
chr5_4 exon 48412034 48412334 48412034 ID=Msa0855240-mRNA-1:exon:15260;Parent=Msa0855240-mRNA-1
chr5_4 CDS 48411252 48411610 48411252 ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1
chr5_4 CDS 48412034 48412334 48412034 ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1
Gene Sequence

>Msa0855240

ATGTATCAATCTTCACACCAACATATGAACTACACAAATAATGATGGAAAATCAAAGGAGTGGACATGGGATGAAAATAAAATCTTTGAGACCATTCTCTTTGAATATCTTGAGGAAGTACAAGAAGGTCGATGGGAAAATCTTGCTCTTGTTTGCGGTCGATCATCAACTGAAGTAAAAGAACACTATGAGACATTGTTGCATGACTTAGCACTCATTGAGGAAGGTCTTGTCGATTTTCCAACAAACTCAGATGATTTTATTTCGAAAGGCAATGCTTCAATCGATGAGAAGAAAGCTCCTCCAACTAAGAATAAGACTAAGAAAGTGGTGAAACATTGGAGTGAAGAAGAACACAGGTTATTTGTAGAGGGAATCGAGATTCATAAGAAGGGAAATTGGAAAATGATTTCACAACATGTTCGTACAAGAACTCCAAGTCAATGTGCTAGCCATGCTCAAAAGCATTTCCTTCACCAAAATGGTACATCAAAAAAGATTTATAAAAAAAGAAGCAACTTCAACATTACCTCATTGAAGGGAGATCATTCCAAACCTCTTCTCAGTAAGGACAACATTCCATCTCCTCCTACCTCATGGGATGGAAATTTCCACCCTCTTCTCTATGTTCCAGCTCTTCTTTATCCTCATCCGAATTAA

Protein sequence

>Msa0855240

MYQSSHQHMNYTNNDGKSKEWTWDENKIFETILFEYLEEVQEGRWENLALVCGRSSTEVKEHYETLLHDLALIEEGLVDFPTNSDDFISKGNASIDEKKAPPTKNKTKKVVKHWSEEEHRLFVEGIEIHKKGNWKMISQHVRTRTPSQCASHAQKHFLHQNGTSKKIYKKRSNFNITSLKGDHSKPLLSKDNIPSPPTSWDGNFHPLLYVPALLYPHPN*