Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855240 | XP_003616071.2 | 86.784 | 227 | 19 | 6 | 1 | 219 | 1 | 224 | 6.59e-131 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855240 | sp|Q9FNN6|SRM1_ARATH | 35.754 | 179 | 90 | 7 | 21 | 179 | 12 | 185 | 3.05e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855240 | G7K5U8 | 86.784 | 227 | 19 | 6 | 1 | 219 | 1 | 224 | 3.15e-131 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0855240 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855240 | MtrunA17_Chr5g0432941 | 86.784 | 227 | 19 | 6 | 1 | 219 | 1 | 224 | 6.06e-135 | 377 |
| Msa0855240 | MtrunA17_Chr5g0432921 | 84.071 | 226 | 27 | 5 | 1 | 219 | 1 | 224 | 1.28e-130 | 367 |
| Msa0855240 | MtrunA17_Chr1g0192061 | 50.000 | 142 | 53 | 2 | 70 | 209 | 19 | 144 | 3.82e-37 | 128 |
| Msa0855240 | MtrunA17_Chr1g0210471 | 38.624 | 189 | 101 | 6 | 20 | 196 | 23 | 208 | 3.74e-32 | 117 |
| Msa0855240 | MtrunA17_Chr1g0162081 | 38.860 | 193 | 90 | 10 | 18 | 186 | 9 | 197 | 1.21e-29 | 111 |
| Msa0855240 | MtrunA17_Chr8g0365011 | 36.702 | 188 | 95 | 8 | 15 | 186 | 2 | 181 | 1.63e-24 | 97.8 |
| Msa0855240 | MtrunA17_Chr7g0241761 | 34.597 | 211 | 111 | 11 | 7 | 196 | 21 | 225 | 1.75e-22 | 93.2 |
| Msa0855240 | MtrunA17_Chr3g0104071 | 36.747 | 166 | 85 | 7 | 12 | 160 | 34 | 196 | 8.34e-22 | 91.3 |
| Msa0855240 | MtrunA17_Chr5g0429521 | 32.292 | 192 | 104 | 8 | 7 | 179 | 15 | 199 | 1.54e-20 | 87.8 |
| Msa0855240 | MtrunA17_Chr4g0062741 | 30.493 | 223 | 105 | 11 | 21 | 195 | 8 | 228 | 3.81e-20 | 86.7 |
| Msa0855240 | MtrunA17_Chr5g0436501 | 30.808 | 198 | 119 | 7 | 20 | 207 | 26 | 215 | 7.22e-18 | 79.7 |
| Msa0855240 | MtrunA17_Chr5g0409841 | 48.837 | 86 | 41 | 2 | 113 | 195 | 93 | 178 | 2.95e-16 | 74.7 |
| Msa0855240 | MtrunA17_Chr5g0440731 | 41.346 | 104 | 54 | 4 | 97 | 195 | 92 | 193 | 1.95e-15 | 73.6 |
| Msa0855240 | MtrunA17_Chr5g0440741 | 45.455 | 88 | 43 | 3 | 113 | 195 | 101 | 188 | 9.04e-15 | 71.6 |
| Msa0855240 | MtrunA17_Chr5g0409831 | 42.169 | 83 | 44 | 3 | 78 | 159 | 46 | 125 | 7.71e-13 | 65.5 |
| Msa0855240 | MtrunA17_Chr4g0059701 | 43.421 | 76 | 39 | 2 | 86 | 157 | 55 | 130 | 8.39e-13 | 65.9 |
| Msa0855240 | MtrunA17_Chr4g0055931 | 37.000 | 100 | 59 | 3 | 81 | 178 | 64 | 161 | 9.74e-13 | 66.2 |
| Msa0855240 | MtrunA17_Chr2g0331031 | 42.466 | 73 | 39 | 2 | 103 | 174 | 100 | 170 | 2.49e-12 | 65.1 |
| Msa0855240 | MtrunA17_Chr6g0452791 | 57.143 | 49 | 20 | 1 | 114 | 161 | 82 | 130 | 5.82e-12 | 62.0 |
| Msa0855240 | MtrunA17_Chr5g0415191 | 43.421 | 76 | 31 | 2 | 84 | 158 | 85 | 149 | 6.32e-12 | 63.5 |
| Msa0855240 | MtrunA17_Chr8g0389241 | 45.205 | 73 | 37 | 2 | 114 | 185 | 107 | 177 | 7.10e-12 | 63.2 |
| Msa0855240 | MtrunA17_Chr3g0135671 | 57.692 | 52 | 21 | 1 | 114 | 164 | 93 | 144 | 8.42e-12 | 62.4 |
| Msa0855240 | MtrunA17_Chr6g0488471 | 51.613 | 62 | 27 | 2 | 114 | 174 | 99 | 158 | 1.63e-11 | 62.4 |
| Msa0855240 | MtrunA17_Chr8g0364741 | 36.283 | 113 | 63 | 4 | 16 | 121 | 5 | 115 | 4.74e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855240 | AT5G04760.1 | 36.757 | 185 | 87 | 5 | 18 | 186 | 3 | 173 | 3.24e-26 | 101 |
| Msa0855240 | AT5G08520.1 | 35.754 | 179 | 90 | 7 | 21 | 179 | 12 | 185 | 3.10e-24 | 97.8 |
| Msa0855240 | AT3G10580.2 | 37.333 | 150 | 87 | 3 | 21 | 168 | 8 | 152 | 5.93e-23 | 93.6 |
| Msa0855240 | AT3G10580.1 | 37.333 | 150 | 87 | 3 | 21 | 168 | 8 | 152 | 9.90e-23 | 93.6 |
| Msa0855240 | AT5G23650.1 | 36.158 | 177 | 92 | 6 | 9 | 166 | 1 | 175 | 8.89e-21 | 89.0 |
| Msa0855240 | AT2G38090.1 | 31.132 | 212 | 107 | 10 | 10 | 197 | 18 | 214 | 2.90e-20 | 87.0 |
| Msa0855240 | AT4G09450.1 | 37.762 | 143 | 79 | 4 | 20 | 160 | 6 | 140 | 1.64e-19 | 83.2 |
| Msa0855240 | AT5G01200.1 | 31.683 | 202 | 109 | 7 | 5 | 179 | 14 | 213 | 2.33e-19 | 84.3 |
| Msa0855240 | AT5G58900.1 | 32.086 | 187 | 97 | 7 | 16 | 179 | 29 | 208 | 2.73e-19 | 84.3 |
| Msa0855240 | AT1G49010.1 | 30.457 | 197 | 96 | 8 | 21 | 179 | 8 | 201 | 3.18e-18 | 81.6 |
| Msa0855240 | AT5G05790.2 | 31.902 | 163 | 93 | 3 | 17 | 165 | 27 | 185 | 9.27e-18 | 80.1 |
| Msa0855240 | AT5G05790.1 | 31.902 | 163 | 93 | 3 | 17 | 165 | 27 | 185 | 9.27e-18 | 80.1 |
| Msa0855240 | AT3G11280.2 | 33.333 | 150 | 94 | 4 | 21 | 165 | 33 | 181 | 8.80e-17 | 77.0 |
| Msa0855240 | AT3G11280.1 | 33.333 | 150 | 94 | 4 | 21 | 165 | 33 | 181 | 8.80e-17 | 77.0 |
| Msa0855240 | AT5G47390.1 | 37.288 | 118 | 52 | 5 | 84 | 194 | 79 | 181 | 3.34e-15 | 73.9 |
| Msa0855240 | AT3G10590.1 | 29.050 | 179 | 105 | 6 | 16 | 177 | 2 | 175 | 6.12e-13 | 65.5 |
| Msa0855240 | AT1G70000.1 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.30e-12 | 65.5 |
| Msa0855240 | AT1G70000.2 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.30e-12 | 65.5 |
| Msa0855240 | AT5G61620.1 | 43.529 | 85 | 45 | 2 | 108 | 191 | 104 | 186 | 8.86e-11 | 60.8 |
Find 44 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATTTCCTTCACCAAAA+TGG | 0.297505 | 5_4:+48412137 | Msa0855240:CDS |
| TTGAATTTCAACATTTAATT+CGG | 0.308654 | 5_4:-48412326 | None:intergenic |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5_4:-48411555 | None:intergenic |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5_4:+48412054 | Msa0855240:CDS |
| GTCCTTACTGAGAAGAGGTT+TGG | 0.374736 | 5_4:-48412225 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5_4:-48411552 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5_4:+48411387 | Msa0855240:CDS |
| ATAAAATCATCTGAGTTTGT+TGG | 0.441615 | 5_4:-48411492 | None:intergenic |
| CTTCAACATTACCTCATTGA+AGG | 0.462445 | 5_4:+48412193 | Msa0855240:CDS |
| GGGAATCGAGATTCATAAGA+AGG | 0.470381 | 5_4:+48412046 | Msa0855240:CDS |
| ATGAACTACACAAATAATGA+TGG | 0.488615 | 5_4:+48411276 | Msa0855240:CDS |
| TCCCATGAGGTAGGAGGAGA+TGG | 0.491481 | 5_4:-48412254 | None:intergenic |
| CTCAAGATATTCAAAGAGAA+TGG | 0.491655 | 5_4:-48411343 | None:intergenic |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5_4:-48412110 | None:intergenic |
| TTCAACATTTAATTCGGATG+AGG | 0.495392 | 5_4:-48412320 | None:intergenic |
| TATTTGTGTAGTTCATATGT+TGG | 0.507032 | 5_4:-48411269 | None:intergenic |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5_4:+48411571 | Msa0855240:CDS |
| TTCCATCTCCTCCTACCTCA+TGG | 0.508016 | 5_4:+48412252 | Msa0855240:CDS |
| GGATGAGGATAAAGAAGAGC+TGG | 0.516096 | 5_4:-48412305 | None:intergenic |
| TTCCAAACCTCTTCTCAGTA+AGG | 0.524962 | 5_4:+48412223 | Msa0855240:CDS |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5_4:+48411560 | Msa0855240:CDS |
| TTCAACATTACCTCATTGAA+GGG | 0.537386 | 5_4:+48412194 | Msa0855240:CDS |
| GAGCTGGAACATAGAGAAGA+GGG | 0.552512 | 5_4:-48412289 | None:intergenic |
| TCCATCTCCTCCTACCTCAT+GGG | 0.558700 | 5_4:+48412253 | Msa0855240:CDS |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5_4:+48411364 | Msa0855240:CDS |
| ATGTTGTCCTTACTGAGAAG+AGG | 0.560674 | 5_4:-48412230 | None:intergenic |
| CATTCTCTTTGAATATCTTG+AGG | 0.571841 | 5_4:+48411344 | Msa0855240:CDS |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5_4:+48411298 | Msa0855240:CDS |
| GGAATCGAGATTCATAAGAA+GGG | 0.583688 | 5_4:+48412047 | Msa0855240:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5_4:+48411287 | Msa0855240:CDS |
| TCTCCTCCTACCTCATGGGA+TGG | 0.596171 | 5_4:+48412257 | Msa0855240:CDS |
| AGAGCTGGAACATAGAGAAG+AGG | 0.602888 | 5_4:-48412290 | None:intergenic |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5_4:+48411452 | Msa0855240:CDS |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5_4:+48411456 | Msa0855240:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5_4:+48411292 | Msa0855240:CDS |
| TTTCCATCCCATGAGGTAGG+AGG | 0.614524 | 5_4:-48412260 | None:intergenic |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5_4:+48411357 | Msa0855240:CDS |
| GGAATGATCTCCCTTCAATG+AGG | 0.623973 | 5_4:-48412204 | None:intergenic |
| AAATTTCCATCCCATGAGGT+AGG | 0.632795 | 5_4:-48412263 | None:intergenic |
| CTGGAACATAGAGAAGAGGG+TGG | 0.633901 | 5_4:-48412286 | None:intergenic |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5_4:+48411365 | Msa0855240:CDS |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5_4:+48411299 | Msa0855240:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5_4:+48411589 | Msa0855240:CDS |
| GTGGAAATTTCCATCCCATG+AGG | 0.722495 | 5_4:-48412267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_4:48411805-48411824 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_4:48411804-48411823 | Msa0855240:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_4:48411805-48411824 | Msa0855240:intron | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_4:48411805-48411824 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_4:48411804-48411823 | Msa0855240:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_4:48411805-48411824 | Msa0855240:intron | 10.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_4:48411707-48411726 | None:intergenic | 15.0% |
| !!! | AGTCAATTTAATTTATATCA+TGG | - | chr5_4:48411991-48412010 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_4:48411707-48411726 | None:intergenic | 15.0% |
| !!! | AGTCAATTTAATTTATATCA+TGG | - | chr5_4:48411991-48412010 | None:intergenic | 15.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_4:48411287-48411306 | Msa0855240:CDS | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_4:48411876-48411895 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_4:48411875-48411894 | Msa0855240:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_4:48412025-48412044 | Msa0855240:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_4:48412026-48412045 | Msa0855240:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_4:48411287-48411306 | Msa0855240:CDS | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_4:48411876-48411895 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_4:48411875-48411894 | Msa0855240:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_4:48412025-48412044 | Msa0855240:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_4:48412026-48412045 | Msa0855240:intron | 20.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_4:48411272-48411291 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_4:48411276-48411295 | Msa0855240:CDS | 25.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_4:48411495-48411514 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_4:48411501-48411520 | Msa0855240:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_4:48411558-48411577 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_4:48411560-48411579 | Msa0855240:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_4:48411655-48411674 | Msa0855240:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_4:48411861-48411880 | Msa0855240:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_4:48411869-48411888 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_4:48411944-48411963 | Msa0855240:intron | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5_4:48412015-48412034 | None:intergenic | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5_4:48412012-48412031 | Msa0855240:intron | 25.0% |
| !!! | TCTTTTTTGATGTACCATTT+TGG | - | chr5_4:48412154-48412173 | None:intergenic | 25.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_4:48411272-48411291 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_4:48411276-48411295 | Msa0855240:CDS | 25.0% |
| ! | ATAAAATCATCTGAGTTTGT+TGG | - | chr5_4:48411495-48411514 | None:intergenic | 25.0% |
| !!! | TCAGATGATTTTATTTCGAA+AGG | + | chr5_4:48411501-48411520 | Msa0855240:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_4:48411558-48411577 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_4:48411560-48411579 | Msa0855240:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_4:48411655-48411674 | Msa0855240:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_4:48411861-48411880 | Msa0855240:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_4:48411869-48411888 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_4:48411944-48411963 | Msa0855240:intron | 25.0% |
| ! | CCTATAAAAAAAATGATGAG+AGG | - | chr5_4:48412015-48412034 | None:intergenic | 25.0% |
| !!! | CCTCTCATCATTTTTTTTAT+AGG | + | chr5_4:48412012-48412031 | Msa0855240:intron | 25.0% |
| !!! | TCTTTTTTGATGTACCATTT+TGG | - | chr5_4:48412154-48412173 | None:intergenic | 25.0% |
| CTCAAGATATTCAAAGAGAA+TGG | - | chr5_4:48411346-48411365 | None:intergenic | 30.0% | |
| CATTCTCTTTGAATATCTTG+AGG | + | chr5_4:48411344-48411363 | Msa0855240:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_4:48411555-48411574 | None:intergenic | 30.0% |
| CTTGACACTAACATATGTAT+TGG | + | chr5_4:48411943-48411962 | Msa0855240:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_4:48412054-48412073 | Msa0855240:CDS | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_4:48412194-48412213 | Msa0855240:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+TGG | - | chr5_4:48411346-48411365 | None:intergenic | 30.0% | |
| CATTCTCTTTGAATATCTTG+AGG | + | chr5_4:48411344-48411363 | Msa0855240:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_4:48411555-48411574 | None:intergenic | 30.0% |
| CTTGACACTAACATATGTAT+TGG | + | chr5_4:48411943-48411962 | Msa0855240:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_4:48412054-48412073 | Msa0855240:CDS | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_4:48412194-48412213 | Msa0855240:CDS | 30.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_4:48411292-48411311 | Msa0855240:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_4:48411299-48411318 | Msa0855240:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_4:48411357-48411376 | Msa0855240:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_4:48411387-48411406 | Msa0855240:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_4:48411571-48411590 | Msa0855240:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_4:48411728-48411747 | Msa0855240:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_4:48411742-48411761 | Msa0855240:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_4:48411743-48411762 | Msa0855240:intron | 35.0% |
| GGAATCGAGATTCATAAGAA+GGG | + | chr5_4:48412047-48412066 | Msa0855240:CDS | 35.0% | |
| AAGCATTTCCTTCACCAAAA+TGG | + | chr5_4:48412137-48412156 | Msa0855240:CDS | 35.0% | |
| !! | TTGATGTACCATTTTGGTGA+AGG | - | chr5_4:48412148-48412167 | None:intergenic | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_4:48412193-48412212 | Msa0855240:CDS | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_4:48411292-48411311 | Msa0855240:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_4:48411299-48411318 | Msa0855240:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_4:48411357-48411376 | Msa0855240:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_4:48411387-48411406 | Msa0855240:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_4:48411571-48411590 | Msa0855240:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_4:48411728-48411747 | Msa0855240:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_4:48411742-48411761 | Msa0855240:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_4:48411743-48411762 | Msa0855240:intron | 35.0% |
| GGAATCGAGATTCATAAGAA+GGG | + | chr5_4:48412047-48412066 | Msa0855240:CDS | 35.0% | |
| AAGCATTTCCTTCACCAAAA+TGG | + | chr5_4:48412137-48412156 | Msa0855240:CDS | 35.0% | |
| !! | TTGATGTACCATTTTGGTGA+AGG | - | chr5_4:48412148-48412167 | None:intergenic | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_4:48412193-48412212 | Msa0855240:CDS | 35.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_4:48411298-48411317 | Msa0855240:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_4:48411589-48411608 | Msa0855240:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_4:48411748-48411767 | None:intergenic | 40.0% |
| GGGAATCGAGATTCATAAGA+AGG | + | chr5_4:48412046-48412065 | Msa0855240:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_4:48412130-48412149 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_4:48412223-48412242 | Msa0855240:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_4:48412233-48412252 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_4:48412266-48412285 | None:intergenic | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_4:48411298-48411317 | Msa0855240:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_4:48411589-48411608 | Msa0855240:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_4:48411748-48411767 | None:intergenic | 40.0% |
| GGGAATCGAGATTCATAAGA+AGG | + | chr5_4:48412046-48412065 | Msa0855240:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_4:48412130-48412149 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_4:48412223-48412242 | Msa0855240:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_4:48412233-48412252 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_4:48412266-48412285 | None:intergenic | 40.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_4:48411364-48411383 | Msa0855240:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_4:48411365-48411384 | Msa0855240:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_4:48411452-48411471 | Msa0855240:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_4:48411456-48411475 | Msa0855240:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_4:48411687-48411706 | None:intergenic | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | - | chr5_4:48412207-48412226 | None:intergenic | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_4:48412228-48412247 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_4:48412270-48412289 | None:intergenic | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | - | chr5_4:48412292-48412311 | None:intergenic | 45.0% | |
| AGAGCTGGAACATAGAGAAG+AGG | - | chr5_4:48412293-48412312 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_4:48412308-48412327 | None:intergenic | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_4:48411364-48411383 | Msa0855240:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_4:48411365-48411384 | Msa0855240:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_4:48411452-48411471 | Msa0855240:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_4:48411456-48411475 | Msa0855240:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_4:48411687-48411706 | None:intergenic | 45.0% | |
| GGAATGATCTCCCTTCAATG+AGG | - | chr5_4:48412207-48412226 | None:intergenic | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_4:48412228-48412247 | None:intergenic | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_4:48412270-48412289 | None:intergenic | 45.0% | |
| GAGCTGGAACATAGAGAAGA+GGG | - | chr5_4:48412292-48412311 | None:intergenic | 45.0% | |
| AGAGCTGGAACATAGAGAAG+AGG | - | chr5_4:48412293-48412312 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_4:48412308-48412327 | None:intergenic | 45.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_4:48411673-48411692 | Msa0855240:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_4:48412113-48412132 | None:intergenic | 50.0% |
| TTCCATCTCCTCCTACCTCA+TGG | + | chr5_4:48412252-48412271 | Msa0855240:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | + | chr5_4:48412253-48412272 | Msa0855240:CDS | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | - | chr5_4:48412263-48412282 | None:intergenic | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | - | chr5_4:48412289-48412308 | None:intergenic | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_4:48411673-48411692 | Msa0855240:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_4:48412113-48412132 | None:intergenic | 50.0% |
| TTCCATCTCCTCCTACCTCA+TGG | + | chr5_4:48412252-48412271 | Msa0855240:CDS | 50.0% | |
| TCCATCTCCTCCTACCTCAT+GGG | + | chr5_4:48412253-48412272 | Msa0855240:CDS | 50.0% | |
| TTTCCATCCCATGAGGTAGG+AGG | - | chr5_4:48412263-48412282 | None:intergenic | 50.0% | |
| CTGGAACATAGAGAAGAGGG+TGG | - | chr5_4:48412289-48412308 | None:intergenic | 50.0% | |
| TCCCATGAGGTAGGAGGAGA+TGG | - | chr5_4:48412257-48412276 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | + | chr5_4:48412257-48412276 | Msa0855240:CDS | 55.0% | |
| TCCCATGAGGTAGGAGGAGA+TGG | - | chr5_4:48412257-48412276 | None:intergenic | 55.0% | |
| TCTCCTCCTACCTCATGGGA+TGG | + | chr5_4:48412257-48412276 | Msa0855240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48411252 | 48412334 | 48411252 | ID=Msa0855240;Name=Msa0855240 |
| chr5_4 | mRNA | 48411252 | 48412334 | 48411252 | ID=Msa0855240-mRNA-1;Parent=Msa0855240;Name=Msa0855240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|219 |
| chr5_4 | exon | 48411252 | 48411610 | 48411252 | ID=Msa0855240-mRNA-1:exon:15259;Parent=Msa0855240-mRNA-1 |
| chr5_4 | exon | 48412034 | 48412334 | 48412034 | ID=Msa0855240-mRNA-1:exon:15260;Parent=Msa0855240-mRNA-1 |
| chr5_4 | CDS | 48411252 | 48411610 | 48411252 | ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1 |
| chr5_4 | CDS | 48412034 | 48412334 | 48412034 | ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
