AlfalfaGEDB | Msa0855240

M. sativa cultivar zhongmu-4 / Msa0855240

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855240	XP_003616071.2	86.784	227	19	6	1	219	1	224	6.59e-131	377

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855240	sp\|Q9FNN6\|SRM1_ARATH	35.754	179	90	7	21	179	12	185	3.05e-23	97.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855240	G7K5U8	86.784	227	19	6	1	219	1	224	3.15e-131	377

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TFs/TRs:

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Gene ID	Type	Classification
Msa0855240	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855240	MtrunA17_Chr5g0432941	86.784	227	19	6	1	219	1	224	6.06e-135	377
Msa0855240	MtrunA17_Chr5g0432921	84.071	226	27	5	1	219	1	224	1.28e-130	367
Msa0855240	MtrunA17_Chr1g0192061	50.000	142	53	2	70	209	19	144	3.82e-37	128
Msa0855240	MtrunA17_Chr1g0210471	38.624	189	101	6	20	196	23	208	3.74e-32	117
Msa0855240	MtrunA17_Chr1g0162081	38.860	193	90	10	18	186	9	197	1.21e-29	111
Msa0855240	MtrunA17_Chr8g0365011	36.702	188	95	8	15	186	2	181	1.63e-24	97.8
Msa0855240	MtrunA17_Chr7g0241761	34.597	211	111	11	7	196	21	225	1.75e-22	93.2
Msa0855240	MtrunA17_Chr3g0104071	36.747	166	85	7	12	160	34	196	8.34e-22	91.3
Msa0855240	MtrunA17_Chr5g0429521	32.292	192	104	8	7	179	15	199	1.54e-20	87.8
Msa0855240	MtrunA17_Chr4g0062741	30.493	223	105	11	21	195	8	228	3.81e-20	86.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855240	AT5G04760.1	36.757	185	87	5	18	186	3	173	3.24e-26	101
Msa0855240	AT5G08520.1	35.754	179	90	7	21	179	12	185	3.10e-24	97.8
Msa0855240	AT3G10580.2	37.333	150	87	3	21	168	8	152	5.93e-23	93.6
Msa0855240	AT3G10580.1	37.333	150	87	3	21	168	8	152	9.90e-23	93.6
Msa0855240	AT5G23650.1	36.158	177	92	6	9	166	1	175	8.89e-21	89.0
Msa0855240	AT2G38090.1	31.132	212	107	10	10	197	18	214	2.90e-20	87.0
Msa0855240	AT4G09450.1	37.762	143	79	4	20	160	6	140	1.64e-19	83.2
Msa0855240	AT5G01200.1	31.683	202	109	7	5	179	14	213	2.33e-19	84.3
Msa0855240	AT5G58900.1	32.086	187	97	7	16	179	29	208	2.73e-19	84.3
Msa0855240	AT1G49010.1	30.457	197	96	8	21	179	8	201	3.18e-18	81.6

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Find 44 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAGGAGTGGACAT+GGG	0.673138	5_4:+48411299	Msa0855240:CDS
AAATAATGATGGAAAATCAA+AGG	0.595595	5_4:+48411287	Msa0855240:CDS
AAATTTCCATCCCATGAGGT+AGG	0.632795	5_4:-48412263	None:intergenic
AAGCATTTCCTTCACCAAAA+TGG	0.297505	5_4:+48412137	Msa0855240:CDS
AGAGCTGGAACATAGAGAAG+AGG	0.602888	5_4:-48412290	None:intergenic
AGATTCATAAGAAGGGAAAT+TGG	0.369394	5_4:+48412054	Msa0855240:CDS
AGGAAGTACAAGAAGGTCGA+TGG	0.560186	5_4:+48411364	Msa0855240:CDS
ATAAAATCATCTGAGTTTGT+TGG	0.441615	5_4:-48411492	None:intergenic
ATGAACTACACAAATAATGA+TGG	0.488615	5_4:+48411276	Msa0855240:CDS
ATGATGGAAAATCAAAGGAG+TGG	0.613850	5_4:+48411292	Msa0855240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCAAGATATTCAAAGAGAA+TGG	-	chr5_4:48411346-48411365	None:intergenic	30.0%
CATTCTCTTTGAATATCTTG+AGG	+	chr5_4:48411344-48411363	Msa0855240:CDS	30.0%
CTTGACACTAACATATGTAT+TGG	+	chr5_4:48411943-48411962	Msa0855240:intron	30.0%
AGATTCATAAGAAGGGAAAT+TGG	+	chr5_4:48412054-48412073	Msa0855240:CDS	30.0%
TTCAACATTACCTCATTGAA+GGG	+	chr5_4:48412194-48412213	Msa0855240:CDS	30.0%
CTCAAGATATTCAAAGAGAA+TGG	-	chr5_4:48411346-48411365	None:intergenic	30.0%
CATTCTCTTTGAATATCTTG+AGG	+	chr5_4:48411344-48411363	Msa0855240:CDS	30.0%
CTTGACACTAACATATGTAT+TGG	+	chr5_4:48411943-48411962	Msa0855240:intron	30.0%
AGATTCATAAGAAGGGAAAT+TGG	+	chr5_4:48412054-48412073	Msa0855240:CDS	30.0%
TTCAACATTACCTCATTGAA+GGG	+	chr5_4:48412194-48412213	Msa0855240:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	48411252	48412334	48411252	ID=Msa0855240;Name=Msa0855240
chr5_4	mRNA	48411252	48412334	48411252	ID=Msa0855240-mRNA-1;Parent=Msa0855240;Name=Msa0855240-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|2\|0\|219
chr5_4	exon	48411252	48411610	48411252	ID=Msa0855240-mRNA-1:exon:15259;Parent=Msa0855240-mRNA-1
chr5_4	exon	48412034	48412334	48412034	ID=Msa0855240-mRNA-1:exon:15260;Parent=Msa0855240-mRNA-1
chr5_4	CDS	48411252	48411610	48411252	ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1
chr5_4	CDS	48412034	48412334	48412034	ID=Msa0855240-mRNA-1:cds;Parent=Msa0855240-mRNA-1

Gene Sequence

>Msa0855240

ATGTATCAATCTTCACACCAACATATGAACTACACAAATAATGATGGAAAATCAAAGGAGTGGACATGGGATGAAAATAAAATCTTTGAGACCATTCTCTTTGAATATCTTGAGGAAGTACAAGAAGGTCGATGGGAAAATCTTGCTCTTGTTTGCGGTCGATCATCAACTGAAGTAAAAGAACACTATGAGACATTGTTGCATGACTTAGCACTCATTGAGGAAGGTCTTGTCGATTTTCCAACAAACTCAGATGATTTTATTTCGAAAGGCAATGCTTCAATCGATGAGAAGAAAGCTCCTCCAACTAAGAATAAGACTAAGAAAGTGGTGAAACATTGGAGTGAAGAAGAACACAGGTTATTTGTAGAGGGAATCGAGATTCATAAGAAGGGAAATTGGAAAATGATTTCACAACATGTTCGTACAAGAACTCCAAGTCAATGTGCTAGCCATGCTCAAAAGCATTTCCTTCACCAAAATGGTACATCAAAAAAGATTTATAAAAAAAGAAGCAACTTCAACATTACCTCATTGAAGGGAGATCATTCCAAACCTCTTCTCAGTAAGGACAACATTCCATCTCCTCCTACCTCATGGGATGGAAATTTCCACCCTCTTCTCTATGTTCCAGCTCTTCTTTATCCTCATCCGAATTAA

Protein sequence

>Msa0855240

MYQSSHQHMNYTNNDGKSKEWTWDENKIFETILFEYLEEVQEGRWENLALVCGRSSTEVKEHYETLLHDLALIEEGLVDFPTNSDDFISKGNASIDEKKAPPTKNKTKKVVKHWSEEEHRLFVEGIEIHKKGNWKMISQHVRTRTPSQCASHAQKHFLHQNGTSKKIYKKRSNFNITSLKGDHSKPLLSKDNIPSPPTSWDGNFHPLLYVPALLYPHPN*