Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855280 | XP_039682898.1 | 78.571 | 798 | 61 | 5 | 1 | 688 | 1 | 798 | 0.0 | 1204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855280 | sp|Q6NQJ7|FRS4_ARATH | 22.508 | 662 | 383 | 20 | 36 | 625 | 12 | 615 | 1.70e-26 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855280 | D3YBB9 | 67.448 | 768 | 130 | 8 | 26 | 681 | 88 | 847 | 0.0 | 1002 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0855280 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855280 | MtrunA17_Chr3g0088371 | 82.199 | 191 | 31 | 1 | 501 | 688 | 1 | 191 | 1.06e-104 | 317 |
| Msa0855280 | MtrunA17_Chr2g0324011 | 26.290 | 601 | 315 | 16 | 29 | 548 | 18 | 571 | 4.18e-58 | 206 |
| Msa0855280 | MtrunA17_Chr1g0172971 | 70.085 | 117 | 20 | 1 | 1 | 102 | 1 | 117 | 2.09e-44 | 167 |
| Msa0855280 | MtrunA17_Chr3g0082121 | 25.000 | 648 | 365 | 16 | 35 | 610 | 57 | 655 | 7.12e-43 | 165 |
| Msa0855280 | MtrunA17_Chr6g0475591 | 94.521 | 73 | 4 | 0 | 174 | 246 | 1 | 73 | 3.90e-42 | 147 |
| Msa0855280 | MtrunA17_Chr1g0202341 | 24.876 | 603 | 315 | 18 | 29 | 545 | 59 | 609 | 1.03e-40 | 158 |
| Msa0855280 | MtrunA17_Chr8g0363841 | 24.626 | 601 | 335 | 19 | 26 | 548 | 20 | 580 | 1.70e-39 | 155 |
| Msa0855280 | MtrunA17_Chr7g0258861 | 31.765 | 255 | 155 | 4 | 29 | 283 | 18 | 253 | 8.25e-36 | 137 |
| Msa0855280 | MtrunA17_Chr2g0296781 | 23.585 | 636 | 375 | 21 | 29 | 591 | 5 | 602 | 2.96e-35 | 142 |
| Msa0855280 | MtrunA17_Chr1g0164591 | 32.941 | 170 | 105 | 2 | 117 | 286 | 1 | 161 | 6.62e-24 | 103 |
| Msa0855280 | MtrunA17_Chr5g0448761 | 27.586 | 261 | 170 | 5 | 29 | 286 | 68 | 312 | 1.72e-23 | 105 |
| Msa0855280 | MtrunA17_Chr5g0448761 | 22.034 | 354 | 237 | 11 | 284 | 624 | 374 | 701 | 5.06e-19 | 92.0 |
| Msa0855280 | MtrunA17_Chr1g0203721 | 23.810 | 357 | 228 | 9 | 287 | 626 | 376 | 705 | 5.82e-22 | 101 |
| Msa0855280 | MtrunA17_Chr1g0203721 | 25.191 | 262 | 157 | 7 | 36 | 286 | 78 | 311 | 2.48e-21 | 99.4 |
| Msa0855280 | MtrunA17_Chr1g0207551 | 25.672 | 335 | 204 | 10 | 282 | 601 | 337 | 641 | 7.59e-20 | 94.4 |
| Msa0855280 | MtrunA17_Chr3g0080351 | 24.148 | 352 | 239 | 10 | 284 | 631 | 373 | 700 | 2.13e-19 | 93.2 |
| Msa0855280 | MtrunA17_Chr2g0329031 | 24.633 | 341 | 211 | 10 | 281 | 606 | 309 | 618 | 2.47e-19 | 92.8 |
| Msa0855280 | MtrunA17_Chr2g0329031 | 25.379 | 264 | 156 | 9 | 29 | 286 | 22 | 250 | 8.52e-12 | 68.6 |
| Msa0855280 | MtrunA17_Chr6g0477261 | 24.611 | 321 | 211 | 12 | 284 | 591 | 189 | 491 | 7.74e-19 | 90.9 |
| Msa0855280 | MtrunA17_Chr6g0477261 | 33.058 | 121 | 81 | 0 | 166 | 286 | 7 | 127 | 9.08e-16 | 81.3 |
| Msa0855280 | MtrunA17_Chr6g0458391 | 26.538 | 260 | 150 | 6 | 29 | 286 | 233 | 453 | 1.26e-17 | 87.4 |
| Msa0855280 | MtrunA17_Chr2g0287651 | 25.623 | 281 | 181 | 8 | 14 | 290 | 70 | 326 | 2.38e-17 | 86.7 |
| Msa0855280 | MtrunA17_Chr1g0203051 | 24.701 | 251 | 170 | 3 | 36 | 286 | 94 | 325 | 7.27e-17 | 84.7 |
| Msa0855280 | MtrunA17_Chr5g0441581 | 25.292 | 257 | 161 | 7 | 30 | 286 | 41 | 266 | 1.24e-15 | 80.9 |
| Msa0855280 | MtrunA17_Chr5g0441581 | 25.240 | 313 | 179 | 15 | 284 | 572 | 328 | 609 | 2.70e-14 | 76.6 |
| Msa0855280 | MtrunA17_Chr1g0196541 | 26.255 | 259 | 165 | 8 | 29 | 286 | 5 | 238 | 3.69e-15 | 79.3 |
| Msa0855280 | MtrunA17_Chr1g0196541 | 22.545 | 275 | 182 | 7 | 284 | 545 | 300 | 556 | 7.45e-14 | 75.1 |
| Msa0855280 | MtrunA17_Chr2g0276841 | 24.046 | 262 | 175 | 7 | 35 | 291 | 84 | 326 | 2.41e-14 | 76.6 |
| Msa0855280 | MtrunA17_Chr5g0431001 | 26.538 | 260 | 166 | 9 | 35 | 286 | 75 | 317 | 5.75e-14 | 75.1 |
| Msa0855280 | MtrunA17_Chr2g0291591 | 25.614 | 285 | 162 | 11 | 35 | 307 | 78 | 324 | 1.73e-13 | 73.6 |
| Msa0855280 | MtrunA17_Chr1g0198761 | 24.419 | 258 | 174 | 5 | 35 | 286 | 61 | 303 | 1.79e-13 | 73.9 |
| Msa0855280 | MtrunA17_Chr2g0294841 | 26.846 | 298 | 186 | 10 | 2 | 286 | 21 | 299 | 3.26e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855280 | AT1G76320.3 | 22.508 | 662 | 383 | 20 | 36 | 625 | 12 | 615 | 9.73e-28 | 119 |
| Msa0855280 | AT1G76320.2 | 22.508 | 662 | 383 | 20 | 36 | 625 | 12 | 615 | 1.69e-27 | 119 |
| Msa0855280 | AT1G76320.1 | 22.508 | 662 | 383 | 20 | 36 | 625 | 12 | 615 | 1.73e-27 | 119 |
| Msa0855280 | AT1G76320.4 | 22.508 | 662 | 383 | 20 | 36 | 625 | 12 | 615 | 1.73e-27 | 119 |
| Msa0855280 | AT4G15090.1 | 26.142 | 394 | 237 | 14 | 284 | 656 | 359 | 719 | 1.95e-24 | 109 |
| Msa0855280 | AT4G15090.5 | 26.142 | 394 | 237 | 14 | 284 | 656 | 359 | 719 | 1.95e-24 | 109 |
| Msa0855280 | AT4G15090.3 | 26.142 | 394 | 237 | 14 | 284 | 656 | 359 | 719 | 1.95e-24 | 109 |
| Msa0855280 | AT4G15090.2 | 26.142 | 394 | 237 | 14 | 284 | 656 | 359 | 719 | 1.95e-24 | 109 |
| Msa0855280 | AT4G15090.4 | 26.142 | 394 | 237 | 14 | 284 | 656 | 359 | 719 | 1.95e-24 | 109 |
| Msa0855280 | AT4G38180.1 | 28.295 | 258 | 168 | 5 | 29 | 286 | 81 | 321 | 3.77e-24 | 108 |
| Msa0855280 | AT3G22170.2 | 24.688 | 320 | 201 | 10 | 284 | 591 | 368 | 659 | 1.54e-18 | 90.9 |
| Msa0855280 | AT3G22170.1 | 24.688 | 320 | 201 | 10 | 284 | 591 | 368 | 659 | 1.54e-18 | 90.9 |
| Msa0855280 | AT4G19990.5 | 25.413 | 303 | 186 | 8 | 284 | 572 | 307 | 583 | 8.41e-18 | 88.2 |
| Msa0855280 | AT4G19990.3 | 25.413 | 303 | 186 | 8 | 284 | 572 | 307 | 583 | 8.57e-18 | 88.2 |
| Msa0855280 | AT4G19990.4 | 25.413 | 303 | 186 | 8 | 284 | 572 | 307 | 583 | 8.57e-18 | 88.2 |
| Msa0855280 | AT4G19990.1 | 25.413 | 303 | 186 | 8 | 284 | 572 | 250 | 526 | 8.73e-18 | 88.2 |
| Msa0855280 | AT4G19990.6 | 25.413 | 303 | 186 | 8 | 284 | 572 | 307 | 583 | 1.23e-17 | 87.8 |
| Msa0855280 | AT4G19990.2 | 25.413 | 303 | 186 | 8 | 284 | 572 | 307 | 583 | 1.23e-17 | 87.8 |
| Msa0855280 | AT4G19990.7 | 25.413 | 303 | 186 | 8 | 284 | 572 | 321 | 597 | 1.25e-17 | 87.8 |
| Msa0855280 | AT5G28530.3 | 26.136 | 264 | 165 | 6 | 35 | 286 | 69 | 314 | 3.64e-15 | 79.7 |
| Msa0855280 | AT5G28530.2 | 26.136 | 264 | 165 | 6 | 35 | 286 | 69 | 314 | 3.64e-15 | 79.7 |
| Msa0855280 | AT5G28530.1 | 26.136 | 264 | 165 | 6 | 35 | 286 | 69 | 314 | 3.82e-15 | 79.7 |
| Msa0855280 | AT1G10240.2 | 23.552 | 259 | 170 | 8 | 35 | 286 | 62 | 299 | 3.65e-13 | 73.6 |
| Msa0855280 | AT1G10240.1 | 23.552 | 259 | 170 | 8 | 35 | 286 | 62 | 299 | 3.65e-13 | 73.6 |
| Msa0855280 | AT2G32250.5 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 2.97e-12 | 70.5 |
| Msa0855280 | AT2G32250.2 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 3.28e-12 | 70.5 |
| Msa0855280 | AT2G32250.4 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 3.28e-12 | 70.5 |
| Msa0855280 | AT2G32250.8 | 21.978 | 364 | 253 | 12 | 282 | 638 | 260 | 599 | 3.32e-12 | 70.5 |
| Msa0855280 | AT2G32250.7 | 21.978 | 364 | 253 | 12 | 282 | 638 | 260 | 599 | 3.38e-12 | 70.5 |
| Msa0855280 | AT2G32250.6 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 3.83e-12 | 70.1 |
| Msa0855280 | AT2G32250.1 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 3.83e-12 | 70.1 |
| Msa0855280 | AT2G32250.3 | 21.978 | 364 | 253 | 12 | 282 | 638 | 301 | 640 | 3.83e-12 | 70.1 |
| Msa0855280 | AT2G27110.2 | 22.703 | 370 | 259 | 13 | 281 | 644 | 327 | 675 | 3.54e-11 | 67.0 |
| Msa0855280 | AT2G27110.1 | 22.703 | 370 | 259 | 13 | 281 | 644 | 327 | 675 | 3.54e-11 | 67.0 |
| Msa0855280 | AT2G27110.3 | 22.703 | 370 | 259 | 13 | 281 | 644 | 182 | 530 | 3.62e-11 | 67.0 |
Find 91 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCGCTTCTTTGACTTAAT+TGG | 0.120606 | 5_4:-48470895 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_4:+48470033 | Msa0855280:CDS |
| CAACTAGATTATTCTCTATT+CGG | 0.265452 | 5_4:+48468926 | Msa0855280:CDS |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 5_4:-48470889 | None:intergenic |
| TCTGCTGTTGGCCTGTTGTT+AGG | 0.299104 | 5_4:-48468419 | None:intergenic |
| GCCTTCCAATGTTGATGTTT+TGG | 0.301601 | 5_4:+48470324 | Msa0855280:CDS |
| GCATACGATTTGTGTAAGTT+TGG | 0.305085 | 5_4:-48469889 | None:intergenic |
| CGATCATGATCTTCAAAACT+TGG | 0.305304 | 5_4:-48470373 | None:intergenic |
| TTGAAGATCTTGGAGTTCTT+AGG | 0.331625 | 5_4:+48470493 | Msa0855280:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_4:-48468976 | None:intergenic |
| TTACTTCTCGAAATGATCTA+AGG | 0.358741 | 5_4:-48468610 | None:intergenic |
| TTTGTTTCTTCTGATTGATA+AGG | 0.365204 | 5_4:-48470957 | None:intergenic |
| GAGAGATGATGAAGCTTTAT+CGG | 0.365492 | 5_4:+48470981 | Msa0855280:CDS |
| CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 5_4:+48470733 | Msa0855280:CDS |
| AACTAGATTATTCTCTATTC+GGG | 0.384365 | 5_4:+48468927 | Msa0855280:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_4:+48468983 | Msa0855280:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_4:+48468975 | Msa0855280:CDS |
| CGAGAAGTAATTGAAGTTCA+AGG | 0.391019 | 5_4:+48468623 | Msa0855280:CDS |
| GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 5_4:+48468685 | Msa0855280:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_4:-48470871 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_4:+48470207 | Msa0855280:CDS |
| GAAGGCCTACCTCAGACTTT+AGG | 0.402909 | 5_4:+48469858 | Msa0855280:CDS |
| GAAAGGGTTGGTTGTAAAGT+TGG | 0.408667 | 5_4:+48468488 | Msa0855280:CDS |
| GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 5_4:+48468698 | Msa0855280:CDS |
| GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 5_4:+48470766 | Msa0855280:CDS |
| TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 5_4:-48470863 | None:intergenic |
| AGAGATGATGAAGCTTTATC+GGG | 0.447874 | 5_4:+48470982 | Msa0855280:CDS |
| CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 5_4:+48468371 | Msa0855280:CDS |
| TATGCATTGGTCTTCAGCTT+GGG | 0.450920 | 5_4:+48469907 | Msa0855280:CDS |
| ATGTGTATAAGATATATAGA+TGG | 0.452819 | 5_4:+48468540 | Msa0855280:CDS |
| GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 5_4:+48468653 | Msa0855280:CDS |
| AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 5_4:+48468686 | Msa0855280:CDS |
| ACAAAACAAGAAATTTGATA+AGG | 0.468895 | 5_4:+48468337 | Msa0855280:CDS |
| GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 5_4:+48468408 | Msa0855280:CDS |
| CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 5_4:-48470550 | None:intergenic |
| AGTTGGAATATATTTGAAGC+TGG | 0.472100 | 5_4:+48468505 | Msa0855280:CDS |
| CTTTCTAAAGGTATTCGTAC+AGG | 0.474070 | 5_4:+48470778 | Msa0855280:CDS |
| CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 5_4:-48468593 | None:intergenic |
| ATCATGATCGATTTGATGAA+AGG | 0.476999 | 5_4:+48470386 | Msa0855280:CDS |
| GTATGCATTGGTCTTCAGCT+TGG | 0.479582 | 5_4:+48469906 | Msa0855280:CDS |
| ATGTCGTATGTTTGAGAACA+TGG | 0.479793 | 5_4:+48470450 | Msa0855280:CDS |
| TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 5_4:-48468737 | None:intergenic |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_4:-48470209 | None:intergenic |
| GATCATGATCTTCAAAACTT+GGG | 0.487945 | 5_4:-48470372 | None:intergenic |
| CATTCTTTGAAGACAATACC+TGG | 0.489494 | 5_4:+48470532 | Msa0855280:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_4:+48470223 | Msa0855280:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_4:+48470047 | Msa0855280:CDS |
| TTACAACCAACCCTTTCCTC+AGG | 0.501431 | 5_4:-48468482 | None:intergenic |
| TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 5_4:-48470862 | None:intergenic |
| CTGTTGGTGAAACATCTGAT+GGG | 0.515754 | 5_4:+48470833 | Msa0855280:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_4:-48470015 | None:intergenic |
| ATATCAACTTCATCTGAGAC+TGG | 0.523078 | 5_4:+48468083 | Msa0855280:CDS |
| GGTAATTATGCATATAACAC+TGG | 0.523547 | 5_4:+48468275 | Msa0855280:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5_4:+48468382 | Msa0855280:CDS |
| TAAGATATATAGATGGGATG+TGG | 0.528498 | 5_4:+48468547 | Msa0855280:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_4:-48470204 | None:intergenic |
| TGGGCTTTGTTCATGGCACA+TGG | 0.532868 | 5_4:+48469697 | Msa0855280:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_4:-48470010 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_4:+48470224 | Msa0855280:CDS |
| TGCATCCAAAACATCAACAT+TGG | 0.544202 | 5_4:-48470329 | None:intergenic |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_4:+48468383 | Msa0855280:CDS |
| AAGATCTTGGAGTTCTTAGG+TGG | 0.553166 | 5_4:+48470496 | Msa0855280:CDS |
| GGCCTACCTCAGACTTTAGG+TGG | 0.565384 | 5_4:+48469861 | Msa0855280:CDS |
| TCTTCAAAAGTAGCTGCTGT+TGG | 0.568528 | 5_4:+48470817 | Msa0855280:CDS |
| TGAAGCTTTATCGGGGATTG+TGG | 0.569043 | 5_4:+48470990 | Msa0855280:CDS |
| TCCAAAACATCAACATTGGA+AGG | 0.569301 | 5_4:-48470325 | None:intergenic |
| GCTGTTGGTGAAACATCTGA+TGG | 0.570811 | 5_4:+48470832 | Msa0855280:CDS |
| GAATGCTCTGGTTTATGTAA+TGG | 0.573489 | 5_4:-48468581 | None:intergenic |
| CTTACACAAATCGTATGCAT+TGG | 0.574982 | 5_4:+48469894 | Msa0855280:CDS |
| ATCATGATCTTCAAAACTTG+GGG | 0.577988 | 5_4:-48470371 | None:intergenic |
| GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 5_4:+48468701 | Msa0855280:CDS |
| TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 5_4:+48468692 | Msa0855280:CDS |
| TGTCGTATGTTTGAGAACAT+GGG | 0.587312 | 5_4:+48470451 | Msa0855280:CDS |
| TGTGTATAAGATATATAGAT+GGG | 0.601002 | 5_4:+48468541 | Msa0855280:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 5_4:-48470641 | None:intergenic |
| ACCAGTGGACTGTCTGCTGT+TGG | 0.602965 | 5_4:-48468431 | None:intergenic |
| GTATTCAGTGACAACATTGA+CGG | 0.605803 | 5_4:-48470617 | None:intergenic |
| TCACTGATTCATGCTGAGAG+TGG | 0.606950 | 5_4:+48468128 | Msa0855280:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_4:+48470210 | Msa0855280:CDS |
| GCCAACAGCAGACAGTCCAC+TGG | 0.611268 | 5_4:+48468430 | Msa0855280:CDS |
| TTTGAAGACTTAGATGGCGT+CGG | 0.623016 | 5_4:-48470802 | None:intergenic |
| ATCCAATTAAGTCAAAGAAG+CGG | 0.625663 | 5_4:+48470893 | Msa0855280:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_4:+48470048 | Msa0855280:CDS |
| TTCACAAACTCAATAACCAG+TGG | 0.650808 | 5_4:-48468446 | None:intergenic |
| GATTTCAGCTTATCGACAGA+CGG | 0.652942 | 5_4:-48470592 | None:intergenic |
| GACAAGCCACCTAAAGTCTG+AGG | 0.653221 | 5_4:-48469867 | None:intergenic |
| TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 5_4:-48470866 | None:intergenic |
| TGTTGGTGAAACATCTGATG+GGG | 0.680741 | 5_4:+48470834 | Msa0855280:CDS |
| AGCCACCTAAAGTCTGAGGT+AGG | 0.684957 | 5_4:-48469863 | None:intergenic |
| ACTAGATTATTCTCTATTCG+GGG | 0.686575 | 5_4:+48468928 | Msa0855280:CDS |
| GAGATGATGAAGCTTTATCG+GGG | 0.689274 | 5_4:+48470983 | Msa0855280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGATGAGTTAAATAATT+TGG | + | chr5_4:48469766-48469785 | Msa0855280:CDS | 15.0% |
| !!! | AATCAAATTTTGACTATAAT+TGG | + | chr5_4:48469807-48469826 | Msa0855280:CDS | 15.0% |
| !!! | ATCAAATTTTGACTATAATT+GGG | + | chr5_4:48469808-48469827 | Msa0855280:CDS | 15.0% |
| !!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr5_4:48468254-48468273 | Msa0855280:intron | 20.0% |
| !! | ACAAAACAAGAAATTTGATA+AGG | + | chr5_4:48468337-48468356 | Msa0855280:CDS | 20.0% |
| !! | ATGTGTATAAGATATATAGA+TGG | + | chr5_4:48468540-48468559 | Msa0855280:CDS | 20.0% |
| !! | TGTGTATAAGATATATAGAT+GGG | + | chr5_4:48468541-48468560 | Msa0855280:CDS | 20.0% |
| !! | TGAATATCATAGTAAAAAGA+TGG | - | chr5_4:48468854-48468873 | None:intergenic | 20.0% |
| !!! | TTCTTATAATTTGTGATTAC+AGG | + | chr5_4:48469341-48469360 | Msa0855280:intron | 20.0% |
| !!! | ATGATGATAAATTGTTTTGA+TGG | + | chr5_4:48469836-48469855 | Msa0855280:CDS | 20.0% |
| !!! | TTTTTCAAAGTTTTCACAAT+TGG | + | chr5_4:48470262-48470281 | Msa0855280:CDS | 20.0% |
| ! | TCTATGATTCTTTATTGCTA+GGG | - | chr5_4:48468211-48468230 | None:intergenic | 25.0% |
| ! | TTCTATGATTCTTTATTGCT+AGG | - | chr5_4:48468212-48468231 | None:intergenic | 25.0% |
| !! | ATAACACTGGATTTTCTATT+AGG | + | chr5_4:48468288-48468307 | Msa0855280:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | + | chr5_4:48468888-48468907 | Msa0855280:CDS | 25.0% |
| ! | CAACTAGATTATTCTCTATT+CGG | + | chr5_4:48468926-48468945 | Msa0855280:CDS | 25.0% |
| ! | AACTAGATTATTCTCTATTC+GGG | + | chr5_4:48468927-48468946 | Msa0855280:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr5_4:48468975-48468994 | Msa0855280:CDS | 25.0% |
| ! | AGTAAAAAACACTAACCTAA+TGG | - | chr5_4:48469001-48469020 | None:intergenic | 25.0% |
| ! | TCTTACTTATTTGAACTACA+TGG | + | chr5_4:48469124-48469143 | Msa0855280:intron | 25.0% |
| ! | CTTACTTATTTGAACTACAT+GGG | + | chr5_4:48469125-48469144 | Msa0855280:intron | 25.0% |
| !! | TTTAACCATGTTGTTTGTTT+AGG | + | chr5_4:48469148-48469167 | Msa0855280:intron | 25.0% |
| !! | TTAACCATGTTGTTTGTTTA+GGG | + | chr5_4:48469149-48469168 | Msa0855280:intron | 25.0% |
| !!! | ATTTATATTTTGAACTGCCT+AGG | + | chr5_4:48469225-48469244 | Msa0855280:intron | 25.0% |
| ! | ACACACTTATTAGAATACTT+AGG | + | chr5_4:48469277-48469296 | Msa0855280:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATA+TGG | + | chr5_4:48469456-48469475 | Msa0855280:intron | 25.0% |
| ! | TAAATTTCAACTGCCTTTAT+TGG | + | chr5_4:48469485-48469504 | Msa0855280:intron | 25.0% |
| ! | ATGATTGTCAAAACCAATAA+AGG | - | chr5_4:48469501-48469520 | None:intergenic | 25.0% |
| !!! | TGATAAATTGTTTTGATGGA+AGG | + | chr5_4:48469840-48469859 | Msa0855280:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr5_4:48470033-48470052 | Msa0855280:CDS | 25.0% |
| ! | AATAAATGCAAATCAAGAAG+GGG | - | chr5_4:48470170-48470189 | None:intergenic | 25.0% |
| ! | GAATAAATGCAAATCAAGAA+GGG | - | chr5_4:48470171-48470190 | None:intergenic | 25.0% |
| ! | TGAATAAATGCAAATCAAGA+AGG | - | chr5_4:48470172-48470191 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | - | chr5_4:48470207-48470226 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr5_4:48470207-48470226 | Msa0855280:CDS | 25.0% |
| !! | AACTTTGAAAAACTTCTCAA+AGG | - | chr5_4:48470254-48470273 | None:intergenic | 25.0% |
| !! | AGAAAAATTTTAGATGACTC+TGG | - | chr5_4:48470715-48470734 | None:intergenic | 25.0% |
| !!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr5_4:48470718-48470737 | Msa0855280:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | - | chr5_4:48470892-48470911 | None:intergenic | 25.0% |
| ! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr5_4:48470926-48470945 | Msa0855280:CDS | 25.0% |
| !! | TTTGTTTCTTCTGATTGATA+AGG | - | chr5_4:48470960-48470979 | None:intergenic | 25.0% |
| CTATGATTCTTTATTGCTAG+GGG | - | chr5_4:48468210-48468229 | None:intergenic | 30.0% | |
| GGTAATTATGCATATAACAC+TGG | + | chr5_4:48468275-48468294 | Msa0855280:CDS | 30.0% | |
| CGTTATGTTTGTAACAAAGA+AGG | + | chr5_4:48468371-48468390 | Msa0855280:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr5_4:48468382-48468401 | Msa0855280:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr5_4:48468383-48468402 | Msa0855280:CDS | 30.0% | |
| GTTTACTTAATCCTAACAAC+AGG | + | chr5_4:48468408-48468427 | Msa0855280:CDS | 30.0% | |
| ! | AGTTGGAATATATTTGAAGC+TGG | + | chr5_4:48468505-48468524 | Msa0855280:CDS | 30.0% |
| TAAGATATATAGATGGGATG+TGG | + | chr5_4:48468547-48468566 | Msa0855280:CDS | 30.0% | |
| TTACTTCTCGAAATGATCTA+AGG | - | chr5_4:48468613-48468632 | None:intergenic | 30.0% | |
| !! | GCTCTTATAAATTCTAAAGC+TGG | + | chr5_4:48468653-48468672 | Msa0855280:CDS | 30.0% |
| AGAACGTCTTATGAAGTTAT+GGG | + | chr5_4:48468686-48468705 | Msa0855280:CDS | 30.0% | |
| TTTAAGTCTGAAAACCGAAA+AGG | - | chr5_4:48468740-48468759 | None:intergenic | 30.0% | |
| ACTAGATTATTCTCTATTCG+GGG | + | chr5_4:48468928-48468947 | Msa0855280:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr5_4:48468979-48468998 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr5_4:48468983-48469002 | Msa0855280:CDS | 30.0% | |
| !!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr5_4:48469007-48469026 | Msa0855280:intron | 30.0% |
| TAAGAACTATAGTCAATCCT+AGG | - | chr5_4:48469109-48469128 | None:intergenic | 30.0% | |
| AAATCCCTAAACAAACAACA+TGG | - | chr5_4:48469156-48469175 | None:intergenic | 30.0% | |
| ! | ATTTAGTTTACGCATTCATG+AGG | + | chr5_4:48469311-48469330 | Msa0855280:intron | 30.0% |
| AAAACACCTGGAAAACAATT+CGG | - | chr5_4:48469674-48469693 | None:intergenic | 30.0% | |
| GAGAATGCAAAGAAAAATCT+TGG | + | chr5_4:48469722-48469741 | Msa0855280:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr5_4:48470018-48470037 | None:intergenic | 30.0% | |
| !! | CTTGATTTGCATTTATTCAC+AGG | + | chr5_4:48470173-48470192 | Msa0855280:intron | 30.0% |
| CTCCTCATAATAGTATTTGA+AGG | - | chr5_4:48470212-48470231 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr5_4:48470210-48470229 | Msa0855280:CDS | 30.0% | |
| ! | CAAAGTTTTCACAATTGGTA+AGG | + | chr5_4:48470267-48470286 | Msa0855280:CDS | 30.0% |
| ATCATGATCTTCAAAACTTG+GGG | - | chr5_4:48470374-48470393 | None:intergenic | 30.0% | |
| GATCATGATCTTCAAAACTT+GGG | - | chr5_4:48470375-48470394 | None:intergenic | 30.0% | |
| !! | ATCATGATCGATTTGATGAA+AGG | + | chr5_4:48470386-48470405 | Msa0855280:CDS | 30.0% |
| !!! | GACAATATGTTTTAAAGCGT+TGG | + | chr5_4:48470554-48470573 | Msa0855280:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5_4:48470874-48470893 | None:intergenic | 30.0% |
| ATCCAATTAAGTCAAAGAAG+CGG | + | chr5_4:48470893-48470912 | Msa0855280:CDS | 30.0% | |
| ! | ATATCAACTTCATCTGAGAC+TGG | + | chr5_4:48468083-48468102 | Msa0855280:CDS | 35.0% |
| TTCACAAACTCAATAACCAG+TGG | - | chr5_4:48468449-48468468 | None:intergenic | 35.0% | |
| GAAAGAAAAACCTGAGGAAA+GGG | + | chr5_4:48468472-48468491 | Msa0855280:CDS | 35.0% | |
| ! | GAATGCTCTGGTTTATGTAA+TGG | - | chr5_4:48468584-48468603 | None:intergenic | 35.0% |
| CGAGAAGTAATTGAAGTTCA+AGG | + | chr5_4:48468623-48468642 | Msa0855280:CDS | 35.0% | |
| GAGAACGTCTTATGAAGTTA+TGG | + | chr5_4:48468685-48468704 | Msa0855280:CDS | 35.0% | |
| TCTTATGAAGTTATGGGTCA+AGG | + | chr5_4:48468692-48468711 | Msa0855280:CDS | 35.0% | |
| GACAATTCGTCAAAAAGAGA+TGG | + | chr5_4:48468772-48468791 | Msa0855280:CDS | 35.0% | |
| AATTCGTCAAAAAGAGATGG+TGG | + | chr5_4:48468775-48468794 | Msa0855280:CDS | 35.0% | |
| GTAAAAAGATGGTTTCGAGA+GGG | - | chr5_4:48468843-48468862 | None:intergenic | 35.0% | |
| AGTAAAAAGATGGTTTCGAG+AGG | - | chr5_4:48468844-48468863 | None:intergenic | 35.0% | |
| !!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr5_4:48468896-48468915 | Msa0855280:CDS | 35.0% |
| AGGCTAGCAATGACTAATTA+AGG | + | chr5_4:48469361-48469380 | Msa0855280:intron | 35.0% | |
| GGCTAGCAATGACTAATTAA+GGG | + | chr5_4:48469362-48469381 | Msa0855280:intron | 35.0% | |
| AGCAATGACTAATTAAGGGT+TGG | + | chr5_4:48469366-48469385 | Msa0855280:intron | 35.0% | |
| !!! | CATCGTAAGAGTGTTTTGTT+CGG | + | chr5_4:48469518-48469537 | Msa0855280:intron | 35.0% |
| AATCGTCTGTGGTTTCTTAT+TGG | - | chr5_4:48469615-48469634 | None:intergenic | 35.0% | |
| ! | TCAATTCCGAATTGTTTTCC+AGG | + | chr5_4:48469665-48469684 | Msa0855280:intron | 35.0% |
| ! | TGTTTTCCAGGTGTTTTTCA+TGG | + | chr5_4:48469677-48469696 | Msa0855280:intron | 35.0% |
| ! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr5_4:48469678-48469697 | Msa0855280:intron | 35.0% |
| !!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr5_4:48469690-48469709 | Msa0855280:CDS | 35.0% |
| AAAAAATGCACTGTTTGCAC+GGG | - | chr5_4:48469750-48469769 | None:intergenic | 35.0% | |
| CAAAAAATGCACTGTTTGCA+CGG | - | chr5_4:48469751-48469770 | None:intergenic | 35.0% | |
| GCATACGATTTGTGTAAGTT+TGG | - | chr5_4:48469892-48469911 | None:intergenic | 35.0% | |
| CTTACACAAATCGTATGCAT+TGG | + | chr5_4:48469894-48469913 | Msa0855280:CDS | 35.0% | |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5_4:48469977-48469996 | Msa0855280:CDS | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr5_4:48470047-48470066 | Msa0855280:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr5_4:48470048-48470067 | Msa0855280:CDS | 35.0% | |
| TCCAAAACATCAACATTGGA+AGG | - | chr5_4:48470328-48470347 | None:intergenic | 35.0% | |
| TGCATCCAAAACATCAACAT+TGG | - | chr5_4:48470332-48470351 | None:intergenic | 35.0% | |
| CGATCATGATCTTCAAAACT+TGG | - | chr5_4:48470376-48470395 | None:intergenic | 35.0% | |
| ATGTCGTATGTTTGAGAACA+TGG | + | chr5_4:48470450-48470469 | Msa0855280:CDS | 35.0% | |
| TGTCGTATGTTTGAGAACAT+GGG | + | chr5_4:48470451-48470470 | Msa0855280:CDS | 35.0% | |
| !!! | TCGACATGTTTTGAAGATCT+TGG | + | chr5_4:48470483-48470502 | Msa0855280:CDS | 35.0% |
| TTGAAGATCTTGGAGTTCTT+AGG | + | chr5_4:48470493-48470512 | Msa0855280:CDS | 35.0% | |
| ! | CATTCTTTGAAGACAATACC+TGG | + | chr5_4:48470532-48470551 | Msa0855280:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTCC+AGG | - | chr5_4:48470553-48470572 | None:intergenic | 35.0% |
| GTATTCAGTGACAACATTGA+CGG | - | chr5_4:48470620-48470639 | None:intergenic | 35.0% | |
| TGTTCTTGAAGCTGGAAAAA+AGG | + | chr5_4:48470741-48470760 | Msa0855280:CDS | 35.0% | |
| !! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr5_4:48470778-48470797 | Msa0855280:CDS | 35.0% |
| !!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr5_4:48470811-48470830 | None:intergenic | 35.0% |
| TCTTTCTTTGAACTTTGGTG+CGG | - | chr5_4:48470869-48470888 | None:intergenic | 35.0% | |
| ! | GAGAGATGATGAAGCTTTAT+CGG | + | chr5_4:48470981-48471000 | Msa0855280:CDS | 35.0% |
| ! | AGAGATGATGAAGCTTTATC+GGG | + | chr5_4:48470982-48471001 | Msa0855280:CDS | 35.0% |
| GAAAGCGAAAGAAAAACCTG+AGG | + | chr5_4:48468466-48468485 | Msa0855280:CDS | 40.0% | |
| CGAAAGAAAAACCTGAGGAA+AGG | + | chr5_4:48468471-48468490 | Msa0855280:CDS | 40.0% | |
| !! | GAAAGGGTTGGTTGTAAAGT+TGG | + | chr5_4:48468488-48468507 | Msa0855280:CDS | 40.0% |
| ! | GCACAGAGAATCTTCCTTTT+CGG | + | chr5_4:48468723-48468742 | Msa0855280:CDS | 40.0% |
| ! | CAGTACATTTTGAACTGCCT+AGG | + | chr5_4:48469089-48469108 | Msa0855280:intron | 40.0% |
| ! | TTTAGGGATTTTCTCGCTTC+TGG | + | chr5_4:48469165-48469184 | Msa0855280:intron | 40.0% |
| TCACACAAGACAAAATGCCT+AGG | - | chr5_4:48469245-48469264 | None:intergenic | 40.0% | |
| !!! | AGACAGCAGCTACTTTTGAT+TGG | + | chr5_4:48469561-48469580 | Msa0855280:intron | 40.0% |
| TGGTCTGTATAAATCGTCTG+TGG | - | chr5_4:48469626-48469645 | None:intergenic | 40.0% | |
| ACAGACGATTTATACAGACC+AGG | + | chr5_4:48469625-48469644 | Msa0855280:intron | 40.0% | |
| !! | TATGCATTGGTCTTCAGCTT+GGG | + | chr5_4:48469907-48469926 | Msa0855280:CDS | 40.0% |
| ! | GTCAAGTCACATTTTACAGC+TGG | + | chr5_4:48469929-48469948 | Msa0855280:CDS | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | - | chr5_4:48470013-48470032 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5_4:48470075-48470094 | Msa0855280:intron | 40.0% |
| ! | AGGGGTGTACTTGTTTACAA+CGG | - | chr5_4:48470152-48470171 | None:intergenic | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | + | chr5_4:48470223-48470242 | Msa0855280:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr5_4:48470224-48470243 | Msa0855280:CDS | 40.0% | |
| ! | GCCTTCCAATGTTGATGTTT+TGG | + | chr5_4:48470324-48470343 | Msa0855280:CDS | 40.0% |
| AAGATCTTGGAGTTCTTAGG+TGG | + | chr5_4:48470496-48470515 | Msa0855280:CDS | 40.0% | |
| GATTTCAGCTTATCGACAGA+CGG | - | chr5_4:48470595-48470614 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | - | chr5_4:48470644-48470663 | None:intergenic | 40.0% | |
| GAGGAGTTGCTTCTTTCTAA+AGG | + | chr5_4:48470766-48470785 | Msa0855280:CDS | 40.0% | |
| TTTGAAGACTTAGATGGCGT+CGG | - | chr5_4:48470805-48470824 | None:intergenic | 40.0% | |
| TCTTCAAAAGTAGCTGCTGT+TGG | + | chr5_4:48470817-48470836 | Msa0855280:CDS | 40.0% | |
| ! | CTGTTGGTGAAACATCTGAT+GGG | + | chr5_4:48470833-48470852 | Msa0855280:CDS | 40.0% |
| ! | TGTTGGTGAAACATCTGATG+GGG | + | chr5_4:48470834-48470853 | Msa0855280:CDS | 40.0% |
| ! | AGCCGCTTCTTTGACTTAAT+TGG | - | chr5_4:48470898-48470917 | None:intergenic | 40.0% |
| ! | GAGATGATGAAGCTTTATCG+GGG | + | chr5_4:48470983-48471002 | Msa0855280:CDS | 40.0% |
| !! | TCACTGATTCATGCTGAGAG+TGG | + | chr5_4:48468128-48468147 | Msa0855280:CDS | 45.0% |
| GAAAAACCTGAGGAAAGGGT+TGG | + | chr5_4:48468476-48468495 | Msa0855280:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+AGG | - | chr5_4:48468485-48468504 | None:intergenic | 45.0% | |
| GAAGTTATGGGTCAAGGAGT+TGG | + | chr5_4:48468698-48468717 | Msa0855280:CDS | 45.0% | |
| ! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr5_4:48468779-48468798 | Msa0855280:CDS | 45.0% |
| AACACAATAACGCACTAGCC+TGG | - | chr5_4:48469646-48469665 | None:intergenic | 45.0% | |
| CAAAGCCCATGAAAAACACC+TGG | - | chr5_4:48469686-48469705 | None:intergenic | 45.0% | |
| !! | GTATGCATTGGTCTTCAGCT+TGG | + | chr5_4:48469906-48469925 | Msa0855280:CDS | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | + | chr5_4:48470066-48470085 | Msa0855280:intron | 45.0% | |
| ATCCCAATAGTCAGCTGATG+CGG | + | chr5_4:48470125-48470144 | Msa0855280:intron | 45.0% | |
| TGAAGCTGGAAAAAAGGCAG+AGG | + | chr5_4:48470747-48470766 | Msa0855280:CDS | 45.0% | |
| ! | GCTGTTGGTGAAACATCTGA+TGG | + | chr5_4:48470832-48470851 | Msa0855280:CDS | 45.0% |
| ! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr5_4:48470865-48470884 | None:intergenic | 45.0% |
| ! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr5_4:48470866-48470885 | None:intergenic | 45.0% |
| ! | TGAAGCTTTATCGGGGATTG+TGG | + | chr5_4:48470990-48471009 | Msa0855280:CDS | 45.0% |
| ! | TCTGCTGTTGGCCTGTTGTT+AGG | - | chr5_4:48468422-48468441 | None:intergenic | 50.0% |
| CTAAGGTAACGCGAATGCTC+TGG | - | chr5_4:48468596-48468615 | None:intergenic | 50.0% | |
| GTTATGGGTCAAGGAGTTGG+AGG | + | chr5_4:48468701-48468720 | Msa0855280:CDS | 50.0% | |
| !! | TGGGCTTTGTTCATGGCACA+TGG | + | chr5_4:48469697-48469716 | Msa0855280:CDS | 50.0% |
| GAAGGCCTACCTCAGACTTT+AGG | + | chr5_4:48469858-48469877 | Msa0855280:CDS | 50.0% | |
| ! | AGCCACCTAAAGTCTGAGGT+AGG | - | chr5_4:48469866-48469885 | None:intergenic | 50.0% |
| GACAAGCCACCTAAAGTCTG+AGG | - | chr5_4:48469870-48469889 | None:intergenic | 50.0% | |
| GACCGCATCAGCTGACTATT+GGG | - | chr5_4:48470130-48470149 | None:intergenic | 50.0% | |
| !! | ACCAGTGGACTGTCTGCTGT+TGG | - | chr5_4:48468434-48468453 | None:intergenic | 55.0% |
| GGCCTACCTCAGACTTTAGG+TGG | + | chr5_4:48469861-48469880 | Msa0855280:CDS | 55.0% | |
| GGACCGCATCAGCTGACTAT+TGG | - | chr5_4:48470131-48470150 | None:intergenic | 55.0% | |
| CTCGACGGTGTTCTTGAAGC+TGG | + | chr5_4:48470733-48470752 | Msa0855280:CDS | 55.0% | |
| GCCAACAGCAGACAGTCCAC+TGG | + | chr5_4:48468430-48468449 | Msa0855280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 48468074 | 48471023 | 48468074 | ID=Msa0855280;Name=Msa0855280 |
| chr5_4 | mRNA | 48468074 | 48471023 | 48468074 | ID=Msa0855280-mRNA-1;Parent=Msa0855280;Name=Msa0855280-mRNA-1;_AED=0.07;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|688 |
| chr5_4 | exon | 48468074 | 48468167 | 48468074 | ID=Msa0855280-mRNA-1:exon:15264;Parent=Msa0855280-mRNA-1 |
| chr5_4 | exon | 48468258 | 48469004 | 48468258 | ID=Msa0855280-mRNA-1:exon:15265;Parent=Msa0855280-mRNA-1 |
| chr5_4 | exon | 48469687 | 48470083 | 48469687 | ID=Msa0855280-mRNA-1:exon:15266;Parent=Msa0855280-mRNA-1 |
| chr5_4 | exon | 48470195 | 48471023 | 48470195 | ID=Msa0855280-mRNA-1:exon:15267;Parent=Msa0855280-mRNA-1 |
| chr5_4 | CDS | 48468074 | 48468167 | 48468074 | ID=Msa0855280-mRNA-1:cds;Parent=Msa0855280-mRNA-1 |
| chr5_4 | CDS | 48468258 | 48469004 | 48468258 | ID=Msa0855280-mRNA-1:cds;Parent=Msa0855280-mRNA-1 |
| chr5_4 | CDS | 48469687 | 48470083 | 48469687 | ID=Msa0855280-mRNA-1:cds;Parent=Msa0855280-mRNA-1 |
| chr5_4 | CDS | 48470195 | 48471023 | 48470195 | ID=Msa0855280-mRNA-1:cds;Parent=Msa0855280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
