Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855690 | XP_003616150.2 | 90.164 | 488 | 37 | 1 | 1 | 477 | 1 | 488 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855690 | sp|Q6NQJ8|SDG40_ARATH | 54.175 | 491 | 201 | 7 | 1 | 476 | 1 | 482 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855690 | G7KFS1 | 90.164 | 488 | 37 | 1 | 1 | 477 | 1 | 488 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0855690 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855690 | MtrunA17_Chr5g0433621 | 90.164 | 488 | 37 | 1 | 1 | 477 | 1 | 488 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0855690 | AT5G17240.1 | 54.175 | 491 | 201 | 7 | 1 | 476 | 1 | 482 | 0.0 | 526 |
| Msa0855690 | AT5G17240.2 | 56.410 | 390 | 161 | 5 | 91 | 476 | 27 | 411 | 1.24e-156 | 451 |
Find 99 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGTTGTAATGCAAATA+AGG | 0.165609 | 5_4:-49372399 | Msa0855690:three_prime_UTR |
| CTAGTCATTAAAGCAGATTT+TGG | 0.219025 | 5_4:+49375856 | None:intergenic |
| GTCGGACATCTTGCATATTC+TGG | 0.229958 | 5_4:-49372805 | Msa0855690:CDS |
| AACATTTAAGGCTTGGGTTT+GGG | 0.237108 | 5_4:-49373844 | Msa0855690:CDS |
| GAAATGATGTTATGATTAAT+TGG | 0.256359 | 5_4:-49372416 | Msa0855690:exon |
| TTGTTAAACTTATGTCATTC+AGG | 0.257944 | 5_4:-49372627 | Msa0855690:CDS |
| CTATGGAACATACACAAATT+TGG | 0.272520 | 5_4:-49373022 | Msa0855690:CDS |
| AGCTTCTTTCCATTCTGATT+TGG | 0.281371 | 5_4:+49373908 | None:intergenic |
| CAACACTCTCTTTCCTCTCT+TGG | 0.303355 | 5_4:-49376148 | Msa0855690:CDS |
| CACTTCTACTTCATGGTCTA+AGG | 0.325752 | 5_4:-49372920 | Msa0855690:CDS |
| TAACATTTAAGGCTTGGGTT+TGG | 0.329689 | 5_4:-49373845 | Msa0855690:CDS |
| ATTGGTTGTAATGCAAATAA+GGG | 0.335927 | 5_4:-49372398 | Msa0855690:three_prime_UTR |
| CATGACTATAATTTCATTGT+TGG | 0.340261 | 5_4:+49372768 | None:intergenic |
| TTGGAGCTTCTTGAACACTA+TGG | 0.346357 | 5_4:-49373003 | Msa0855690:CDS |
| TTGTAAGGGATATGATTTAC+TGG | 0.358933 | 5_4:-49372363 | None:intergenic |
| GGGCAACCCCTCATAATAAA+AGG | 0.361144 | 5_4:-49372834 | Msa0855690:CDS |
| AGTCGTAACTTTGCGGCAAA+TGG | 0.362498 | 5_4:+49374145 | None:intergenic |
| CTATGTACACTTCTACTTCA+TGG | 0.363522 | 5_4:-49372927 | Msa0855690:CDS |
| GGTGGAAATTAGCTGTCTTA+TGG | 0.372422 | 5_4:-49372507 | Msa0855690:CDS |
| GACTACACTCCAATGCATTC+AGG | 0.375734 | 5_4:+49372674 | None:intergenic |
| TAATTAAACAAGTCACCAAC+AGG | 0.396024 | 5_4:+49373537 | None:intergenic |
| GCCTTTCTTGTAATTTGTCC+TGG | 0.398351 | 5_4:+49373353 | None:intergenic |
| TACGACTTGCTAGCCATGTT+TGG | 0.399670 | 5_4:-49374129 | Msa0855690:CDS |
| GAAAGAAGCTCATGCCTTGA+TGG | 0.405482 | 5_4:-49373895 | Msa0855690:CDS |
| AGGAAAGAGAGTGTTGAGAT+TGG | 0.416473 | 5_4:+49376155 | None:intergenic |
| ATCATTTCATGAAAGAATCT+AGG | 0.419097 | 5_4:+49372431 | None:intergenic |
| GCACCTGGAGAGGACCTATC+TGG | 0.423204 | 5_4:-49373510 | Msa0855690:CDS |
| AGAATGGTGCAGTAGAGGTT+TGG | 0.431010 | 5_4:-49375923 | Msa0855690:intron |
| TTCTAGCTGCGTTACGATTG+TGG | 0.436159 | 5_4:-49372855 | Msa0855690:CDS |
| GATTGGTCGGTGTTTGTTGT+TGG | 0.440882 | 5_4:+49376172 | None:intergenic |
| ATGAAATTATAGTCATGAAA+TGG | 0.451259 | 5_4:-49372762 | Msa0855690:CDS |
| CTTGTTATACGAAGTTGGTA+AGG | 0.457725 | 5_4:-49374199 | Msa0855690:CDS |
| TCTAGCTGCGTTACGATTGT+GGG | 0.460277 | 5_4:-49372854 | Msa0855690:CDS |
| GTTTGCTTGTTATACGAAGT+TGG | 0.462021 | 5_4:-49374204 | Msa0855690:CDS |
| CTACCTTTCCTCACTCTGGC+GGG | 0.467292 | 5_4:-49376108 | Msa0855690:intron |
| GAATGGTGCAGTAGAGGTTT+GGG | 0.467488 | 5_4:-49375922 | Msa0855690:intron |
| GTGCTGTGAGAGATCTTAAG+AGG | 0.468743 | 5_4:-49375900 | Msa0855690:CDS |
| CACCAGGTTCTATTATGCTA+TGG | 0.472726 | 5_4:-49373039 | Msa0855690:intron |
| TTGGGTTTGGGCTGCTGCAA+CGG | 0.478013 | 5_4:-49373832 | Msa0855690:intron |
| CTCCAATGCATTCAGGAGTA+AGG | 0.484839 | 5_4:+49372681 | None:intergenic |
| TGTTAAACTTATGTCATTCA+GGG | 0.485910 | 5_4:-49372626 | Msa0855690:CDS |
| TATGAAAACGAGAAGGTCAA+TGG | 0.486866 | 5_4:-49372533 | Msa0855690:CDS |
| AACTTTGCGGCAAATGGACG+AGG | 0.497147 | 5_4:+49374151 | None:intergenic |
| TGCGGCAAATGGACGAGGTA+AGG | 0.498856 | 5_4:+49374156 | None:intergenic |
| GCTAGCAAGTCGTAACTTTG+CGG | 0.510142 | 5_4:+49374138 | None:intergenic |
| GTTTCTACCTTTCCTCACTC+TGG | 0.514945 | 5_4:-49376112 | Msa0855690:CDS |
| TAGCTGTCTTATGGAGGCTC+GGG | 0.520018 | 5_4:-49372498 | Msa0855690:CDS |
| GCCAGGACAAATTACAAGAA+AGG | 0.522389 | 5_4:-49373354 | Msa0855690:CDS |
| AAGAGAGTGTTGAGATTGGT+CGG | 0.523760 | 5_4:+49376159 | None:intergenic |
| TTAGCTGTCTTATGGAGGCT+CGG | 0.525826 | 5_4:-49372499 | Msa0855690:CDS |
| GAATGTATCTCTTATTGCAA+TGG | 0.527122 | 5_4:-49372457 | Msa0855690:CDS |
| TATATTATGAGCTTCTAAGA+AGG | 0.528878 | 5_4:+49372591 | None:intergenic |
| GAAAGAGCTAGGTTAGAAGA+TGG | 0.535954 | 5_4:-49376260 | Msa0855690:exon |
| GCTGGTTGTTTATGCCCTGT+TGG | 0.537691 | 5_4:-49373552 | Msa0855690:CDS |
| TTTCTCAAATTCACCAAACA+TGG | 0.542605 | 5_4:+49374116 | None:intergenic |
| GTGCGAGTTCTGAAAGAGCT+AGG | 0.544527 | 5_4:-49376271 | Msa0855690:five_prime_UTR |
| TACCTTACTCCTGAATGCAT+TGG | 0.549106 | 5_4:-49372683 | Msa0855690:CDS |
| GAAGTAGAAGTGTACATAGC+AGG | 0.549201 | 5_4:+49372931 | None:intergenic |
| AAACATGAGTTCCTCCATCA+AGG | 0.553023 | 5_4:+49373881 | None:intergenic |
| CTCAGAGACTAACTGATGGT+GGG | 0.556902 | 5_4:-49373410 | Msa0855690:CDS |
| TTGTTTAATTACGATGCACC+TGG | 0.559289 | 5_4:-49373525 | Msa0855690:CDS |
| ATACCAGATAGGTCCTCTCC+AGG | 0.561435 | 5_4:+49373507 | None:intergenic |
| TCTCAGAGACTAACTGATGG+TGG | 0.562053 | 5_4:-49373411 | Msa0855690:CDS |
| AAGAACATGGAAGCTTTGAA+AGG | 0.566087 | 5_4:-49376234 | Msa0855690:CDS |
| GTGTACATAGCAGGTTCCAA+AGG | 0.569923 | 5_4:+49372940 | None:intergenic |
| TCTACCTTTCCTCACTCTGG+CGG | 0.572108 | 5_4:-49376109 | Msa0855690:CDS |
| AAATTACAAGAAAGGCGACC+AGG | 0.572285 | 5_4:-49373346 | Msa0855690:intron |
| CTCGGACATTGCATATACCA+TGG | 0.573706 | 5_4:-49373581 | Msa0855690:CDS |
| CTACGTCGTCAATACCAGAT+AGG | 0.574667 | 5_4:+49373496 | None:intergenic |
| CGAGAAGGTCAATGGATAGG+TGG | 0.576592 | 5_4:-49372525 | Msa0855690:CDS |
| TTGTTATACGAAGTTGGTAA+GGG | 0.583923 | 5_4:-49374198 | Msa0855690:CDS |
| GCTTTGAAAGGTTCTTAACA+TGG | 0.587490 | 5_4:-49376222 | Msa0855690:CDS |
| TCGGACATTGCATATACCAT+GGG | 0.588653 | 5_4:-49373580 | Msa0855690:CDS |
| GTATCGTCTTCAATAGATGT+TGG | 0.593968 | 5_4:+49372703 | None:intergenic |
| TAGAAGATGGAACAAGAACA+TGG | 0.594815 | 5_4:-49376247 | Msa0855690:exon |
| TAATTACGATGCACCTGGAG+AGG | 0.595408 | 5_4:-49373520 | Msa0855690:CDS |
| TGCTGTGAGAGATCTTAAGA+GGG | 0.596123 | 5_4:-49375899 | Msa0855690:CDS |
| GGAAATTAGCTGTCTTATGG+AGG | 0.596583 | 5_4:-49372504 | Msa0855690:CDS |
| TGTACATAGCAGGTTCCAAA+GGG | 0.596868 | 5_4:+49372941 | None:intergenic |
| CATATACCATGGGATGAAGC+TGG | 0.602506 | 5_4:-49373570 | Msa0855690:CDS |
| CATAATAAAAGGAGGTCTGT+CGG | 0.606789 | 5_4:-49372823 | Msa0855690:CDS |
| AAACGAGAAGGTCAATGGAT+AGG | 0.609984 | 5_4:-49372528 | Msa0855690:CDS |
| GGGAGTTACCCGCCAGAGTG+AGG | 0.610390 | 5_4:+49376100 | None:intergenic |
| AATTCTCAGAGACTAACTGA+TGG | 0.621388 | 5_4:-49373414 | Msa0855690:CDS |
| GCAGAGAGAATGACCAAGAG+AGG | 0.631070 | 5_4:+49376135 | None:intergenic |
| AGAAGCTCATGCCTTGATGG+AGG | 0.631236 | 5_4:-49373892 | Msa0855690:CDS |
| AAACAACCAGCTTCATCCCA+TGG | 0.633574 | 5_4:+49373564 | None:intergenic |
| TTTCATCTATGAAAACGAGA+AGG | 0.633735 | 5_4:-49372540 | Msa0855690:CDS |
| TTGGTGAATCTGATATTCCA+AGG | 0.633842 | 5_4:+49376191 | None:intergenic |
| GCAGCTAGAAGCGCAAACGA+AGG | 0.634016 | 5_4:+49372868 | None:intergenic |
| TCACTCTATATCCATCCCAT+CGG | 0.638406 | 5_4:-49372895 | Msa0855690:CDS |
| ATCAGGTGGATGAAGCTATG+TGG | 0.641575 | 5_4:-49373956 | Msa0855690:intron |
| TTAACATGGACATCACACCT+TGG | 0.645130 | 5_4:-49376208 | Msa0855690:CDS |
| TTACCCGCCAGAGTGAGGAA+AGG | 0.662573 | 5_4:+49376105 | None:intergenic |
| CAACCCCTCATAATAAAAGG+AGG | 0.668522 | 5_4:-49372831 | Msa0855690:CDS |
| AATAAGAGATACATTCAATG+AGG | 0.670385 | 5_4:+49372464 | None:intergenic |
| GTAAGGGAAAGACTTCAAGA+TGG | 0.690936 | 5_4:-49374182 | Msa0855690:CDS |
| GCTGTGAGAGATCTTAAGAG+GGG | 0.713261 | 5_4:-49375898 | Msa0855690:CDS |
| AATTAAACAAGTCACCAACA+GGG | 0.716642 | 5_4:+49373538 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAATTGTAATAAAAAAA+AGG | + | chr5_4:49372602-49372621 | None:intergenic | 10.0% |
| !! | AATTAAATACAAAAAACTAT+TGG | + | chr5_4:49373025-49373044 | None:intergenic | 10.0% |
| !!! | ATTTAATTTTTGAAATTGTA+AGG | - | chr5_4:49373037-49373056 | Msa0855690:intron | 10.0% |
| !!! | TTTATGATAAATTTTATTCA+GGG | + | chr5_4:49375406-49375425 | None:intergenic | 10.0% |
| !!! | ATTTATGATAAATTTTATTC+AGG | + | chr5_4:49375407-49375426 | None:intergenic | 10.0% |
| !!! | AAAAATGTAAAGTTTTGATT+GGG | + | chr5_4:49372579-49372598 | None:intergenic | 15.0% |
| !! | CAATAATTCTAACAAAAAAT+TGG | + | chr5_4:49374298-49374317 | None:intergenic | 15.0% |
| !! | TCGAATTGAAAATATTTATA+TGG | + | chr5_4:49375519-49375538 | None:intergenic | 15.0% |
| !!! | GAAAAATGTAAAGTTTTGAT+TGG | + | chr5_4:49372580-49372599 | None:intergenic | 20.0% |
| !! | TGATGTATGATTTCAATTTA+GGG | - | chr5_4:49373187-49373206 | Msa0855690:intron | 20.0% |
| !!! | TAAGTTATTTCTATAGCAAA+GGG | + | chr5_4:49374148-49374167 | None:intergenic | 20.0% |
| !!! | ATAAGTTATTTCTATAGCAA+AGG | + | chr5_4:49374149-49374168 | None:intergenic | 20.0% |
| !! | GAAAGGTAATTAAAATTAAG+AGG | + | chr5_4:49374257-49374276 | None:intergenic | 20.0% |
| !! | ATTCTAACAAAAAATTGGAT+TGG | + | chr5_4:49374293-49374312 | None:intergenic | 20.0% |
| !!! | ATTTTTTAGTTTATCTCGTT+AGG | - | chr5_4:49374592-49374611 | Msa0855690:intron | 20.0% |
| !!! | GTAGATAATTTTCAATCAAA+TGG | - | chr5_4:49375179-49375198 | Msa0855690:intron | 20.0% |
| !!! | GAAATTTTAACATAACCATT+AGG | - | chr5_4:49375349-49375368 | Msa0855690:intron | 20.0% |
| !! | AATTGAATATGTAAACCTAA+TGG | + | chr5_4:49375367-49375386 | None:intergenic | 20.0% |
| !! | ATGAAATTATAGTCATGAAA+TGG | - | chr5_4:49375894-49375913 | Msa0855690:CDS | 20.0% |
| !! | GAAATGATGTTATGATTAAT+TGG | - | chr5_4:49376240-49376259 | Msa0855690:CDS | 20.0% |
| !!! | AAACTTTGCATTTGTTTTCT+TGG | - | chr5_4:49372620-49372639 | Msa0855690:CDS | 25.0% |
| !!! | AACTTTGCATTTGTTTTCTT+GGG | - | chr5_4:49372621-49372640 | Msa0855690:CDS | 25.0% |
| ! | ACTAAATTAACCGATCTAAA+GGG | + | chr5_4:49373139-49373158 | None:intergenic | 25.0% |
| ! | ATTGAAATCATACATCACAT+TGG | + | chr5_4:49373184-49373203 | None:intergenic | 25.0% |
| ! | GTGATGTATGATTTCAATTT+AGG | - | chr5_4:49373186-49373205 | Msa0855690:intron | 25.0% |
| !! | TTTAAGTCTTAGAGTATTCT+TGG | + | chr5_4:49373270-49373289 | None:intergenic | 25.0% |
| ! | AACAAATTGAGGACTATAAA+AGG | + | chr5_4:49373339-49373358 | None:intergenic | 25.0% |
| !!! | GCTGTTTTCATAAGTTATAT+TGG | + | chr5_4:49374092-49374111 | None:intergenic | 25.0% |
| ! | TTGGTTCAATAAACAATGAA+AGG | + | chr5_4:49374274-49374293 | None:intergenic | 25.0% |
| ! | TGTTAGAATTATTGTATGCA+TGG | - | chr5_4:49374304-49374323 | Msa0855690:intron | 25.0% |
| !! | TAGGTTAGATTATAGCATTT+TGG | - | chr5_4:49374611-49374630 | Msa0855690:intron | 25.0% |
| !!! | CATCTTAATTTGTGATTATC+AGG | - | chr5_4:49374683-49374702 | Msa0855690:intron | 25.0% |
| !!! | AGTTTTTAACATTTAAGGCT+TGG | - | chr5_4:49374805-49374824 | Msa0855690:intron | 25.0% |
| !!! | GTTTTTAACATTTAAGGCTT+GGG | - | chr5_4:49374806-49374825 | Msa0855690:intron | 25.0% |
| ! | ATGTTGTAACAGACTTATTT+CGG | - | chr5_4:49374881-49374900 | Msa0855690:intron | 25.0% |
| !!! | TGTTGAACATTGATTCATTT+TGG | - | chr5_4:49374922-49374941 | Msa0855690:intron | 25.0% |
| ! | TTTACTCATGACAACTAAAA+TGG | + | chr5_4:49374993-49375012 | None:intergenic | 25.0% |
| ! | CATGACTATAATTTCATTGT+TGG | + | chr5_4:49375891-49375910 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTATGTCATTC+AGG | - | chr5_4:49376029-49376048 | Msa0855690:intron | 25.0% |
| ! | TGTTAAACTTATGTCATTCA+GGG | - | chr5_4:49376030-49376049 | Msa0855690:intron | 25.0% |
| !! | TATATTATGAGCTTCTAAGA+AGG | + | chr5_4:49376068-49376087 | None:intergenic | 25.0% |
| ! | AATAAGAGATACATTCAATG+AGG | + | chr5_4:49376195-49376214 | None:intergenic | 25.0% |
| ! | ATCATTTCATGAAAGAATCT+AGG | + | chr5_4:49376228-49376247 | None:intergenic | 25.0% |
| ! | AATTGGTTGTAATGCAAATA+AGG | - | chr5_4:49376257-49376276 | Msa0855690:exon | 25.0% |
| ! | ATTGGTTGTAATGCAAATAA+GGG | - | chr5_4:49376258-49376277 | Msa0855690:exon | 25.0% |
| !!! | GGTTTTCCTTATTTTTGTAA+GGG | - | chr5_4:49376279-49376298 | Msa0855690:five_prime_UTR | 25.0% |
| ! | TCATATCCCTTACAAAAATA+AGG | + | chr5_4:49376288-49376307 | None:intergenic | 25.0% |
| TTTCTTGGGTGATTAATCAA+AGG | - | chr5_4:49372635-49372654 | Msa0855690:CDS | 30.0% | |
| TTCTTGGGTGATTAATCAAA+GGG | - | chr5_4:49372636-49372655 | Msa0855690:CDS | 30.0% | |
| CCAAAACAGTACAACAAAAA+GGG | + | chr5_4:49372713-49372732 | None:intergenic | 30.0% | |
| TCCAAAACAGTACAACAAAA+AGG | + | chr5_4:49372714-49372733 | None:intergenic | 30.0% | |
| ! | CTAGTCATTAAAGCAGATTT+TGG | + | chr5_4:49372803-49372822 | None:intergenic | 30.0% |
| ACCTAATTAACAGGTGATAA+TGG | - | chr5_4:49372993-49373012 | Msa0855690:CDS | 30.0% | |
| TCCATTATCACCTGTTAATT+AGG | + | chr5_4:49372997-49373016 | None:intergenic | 30.0% | |
| TTTGTAATTTCCTTAACTGC+AGG | + | chr5_4:49373079-49373098 | None:intergenic | 30.0% | |
| GACTAAATTAACCGATCTAA+AGG | + | chr5_4:49373140-49373159 | None:intergenic | 30.0% | |
| AACTTAACATGCTTGACATT+TGG | + | chr5_4:49373856-49373875 | None:intergenic | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr5_4:49374001-49374020 | Msa0855690:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr5_4:49374002-49374021 | Msa0855690:intron | 30.0% |
| ATTGTATGCATGGTTAAATC+AGG | - | chr5_4:49374314-49374333 | Msa0855690:intron | 30.0% | |
| !! | TTGTTATACGAAGTTGGTAA+GGG | - | chr5_4:49374458-49374477 | Msa0855690:intron | 30.0% |
| TTTCTCAAATTCACCAAACA+TGG | + | chr5_4:49374543-49374562 | None:intergenic | 30.0% | |
| !! | CTTAATTTGTGATTATCAGG+TGG | - | chr5_4:49374686-49374705 | Msa0855690:intron | 30.0% |
| !! | TTTTGTACAGCTTTTTCTGT+TGG | + | chr5_4:49374726-49374745 | None:intergenic | 30.0% |
| TACAAAAAGCCAAATCAGAA+TGG | - | chr5_4:49374739-49374758 | Msa0855690:intron | 30.0% | |
| ! | GCCTCAGTTTTTAACATTTA+AGG | - | chr5_4:49374800-49374819 | Msa0855690:intron | 30.0% |
| GCCTTAAATGTTAAAAACTG+AGG | + | chr5_4:49374804-49374823 | None:intergenic | 30.0% | |
| TCAAAAACCAGATATCTTCT+CGG | - | chr5_4:49375057-49375076 | Msa0855690:intron | 30.0% | |
| AATTAAACAAGTCACCAACA+GGG | + | chr5_4:49375121-49375140 | None:intergenic | 30.0% | |
| TAATTAAACAAGTCACCAAC+AGG | + | chr5_4:49375122-49375141 | None:intergenic | 30.0% | |
| TGTAGACTATGAACTATTAC+AGG | - | chr5_4:49375476-49375495 | Msa0855690:intron | 30.0% | |
| ATTCCACCATTTAGTAGATA+GGG | - | chr5_4:49375573-49375592 | Msa0855690:intron | 30.0% | |
| ATCATTCCCTATCTACTAAA+TGG | + | chr5_4:49375582-49375601 | None:intergenic | 30.0% | |
| CTATGGAACATACACAAATT+TGG | - | chr5_4:49375634-49375653 | Msa0855690:intron | 30.0% | |
| ! | GGGATGAAAATTTTGTCATT+CGG | + | chr5_4:49375698-49375717 | None:intergenic | 30.0% |
| ! | TGACAAAATTTTCATCCCTT+TGG | - | chr5_4:49375700-49375719 | Msa0855690:intron | 30.0% |
| TTTCATCTATGAAAACGAGA+AGG | - | chr5_4:49376116-49376135 | Msa0855690:CDS | 30.0% | |
| GAATGTATCTCTTATTGCAA+TGG | - | chr5_4:49376199-49376218 | Msa0855690:CDS | 30.0% | |
| !!! | GGGTTTTCCTTATTTTTGTA+AGG | - | chr5_4:49376278-49376297 | Msa0855690:five_prime_UTR | 30.0% |
| TAGAAGATGGAACAAGAACA+TGG | - | chr5_4:49372409-49372428 | Msa0855690:three_prime_UTR | 35.0% | |
| !! | AAGAACATGGAAGCTTTGAA+AGG | - | chr5_4:49372422-49372441 | Msa0855690:exon | 35.0% |
| !! | GCTTTGAAAGGTTCTTAACA+TGG | - | chr5_4:49372434-49372453 | Msa0855690:CDS | 35.0% |
| TTGGTGAATCTGATATTCCA+AGG | + | chr5_4:49372468-49372487 | None:intergenic | 35.0% | |
| !! | CCCTTTTTGTTGTACTGTTT+TGG | - | chr5_4:49372710-49372729 | Msa0855690:CDS | 35.0% |
| !!! | TGTTGTACTGTTTTGGAGAA+TGG | - | chr5_4:49372717-49372736 | Msa0855690:CDS | 35.0% |
| !! | GACTAGTGAGAGTGTTATTA+TGG | - | chr5_4:49372817-49372836 | Msa0855690:CDS | 35.0% |
| AAGAACAAAAACCTGAACAG+AGG | + | chr5_4:49372888-49372907 | None:intergenic | 35.0% | |
| !! | TCCTCAATTTGTTGACTTGA+TGG | - | chr5_4:49373346-49373365 | Msa0855690:intron | 35.0% |
| !! | CCTCAATTTGTTGACTTGAT+GGG | - | chr5_4:49373347-49373366 | Msa0855690:CDS | 35.0% |
| TTAACATGCTTGACATTTGG+TGG | + | chr5_4:49373853-49373872 | None:intergenic | 35.0% | |
| ! | ATTTGGTTTATGAACTGGAC+TGG | + | chr5_4:49373912-49373931 | None:intergenic | 35.0% |
| ! | AGGCAATTTGGTTTATGAAC+TGG | + | chr5_4:49373917-49373936 | None:intergenic | 35.0% |
| TGTGCAATGTTAGAGACTAA+TGG | - | chr5_4:49373941-49373960 | Msa0855690:CDS | 35.0% | |
| TTAGAGACTAATGGTCTGTT+TGG | - | chr5_4:49373950-49373969 | Msa0855690:CDS | 35.0% | |
| ATAAGCGCTCATCATGATAA+GGG | - | chr5_4:49374171-49374190 | Msa0855690:CDS | 35.0% | |
| ! | GCTTTAAGCTGCAAATAAGT+TGG | - | chr5_4:49374199-49374218 | Msa0855690:CDS | 35.0% |
| !! | AATAAGTTGGTTGTCCAAAC+AGG | - | chr5_4:49374212-49374231 | Msa0855690:CDS | 35.0% |
| GAAACCAAATCCTAACAAGT+AGG | + | chr5_4:49374347-49374366 | None:intergenic | 35.0% | |
| !! | GTTTGCTTGTTATACGAAGT+TGG | - | chr5_4:49374452-49374471 | Msa0855690:intron | 35.0% |
| !! | CTTGTTATACGAAGTTGGTA+AGG | - | chr5_4:49374457-49374476 | Msa0855690:intron | 35.0% |
| AGCTTCTTTCCATTCTGATT+TGG | + | chr5_4:49374751-49374770 | None:intergenic | 35.0% | |
| ! | TAACATTTAAGGCTTGGGTT+TGG | - | chr5_4:49374811-49374830 | Msa0855690:intron | 35.0% |
| ! | AACATTTAAGGCTTGGGTTT+GGG | - | chr5_4:49374812-49374831 | Msa0855690:intron | 35.0% |
| TTGTTTAATTACGATGCACC+TGG | - | chr5_4:49375131-49375150 | Msa0855690:intron | 35.0% | |
| AATTCTCAGAGACTAACTGA+TGG | - | chr5_4:49375242-49375261 | Msa0855690:intron | 35.0% | |
| !! | ATGCATATTGCTTTTATGCC+AGG | - | chr5_4:49375285-49375304 | Msa0855690:intron | 35.0% |
| ACAAATTGTTGCCTGTCTTA+TGG | - | chr5_4:49375452-49375471 | Msa0855690:intron | 35.0% | |
| ATAGTCTACATCCATAAGAC+AGG | + | chr5_4:49375466-49375485 | None:intergenic | 35.0% | |
| TGAAGATAGAGCGAAAACAA+TGG | + | chr5_4:49375554-49375573 | None:intergenic | 35.0% | |
| CATTCCACCATTTAGTAGAT+AGG | - | chr5_4:49375572-49375591 | Msa0855690:intron | 35.0% | |
| ATTCCCTATCTACTAAATGG+TGG | + | chr5_4:49375579-49375598 | None:intergenic | 35.0% | |
| !!! | TAAGTTACCTTGTTTTCACC+AGG | - | chr5_4:49375601-49375620 | Msa0855690:intron | 35.0% |
| AATAGAACCTGGTGAAAACA+AGG | + | chr5_4:49375611-49375630 | None:intergenic | 35.0% | |
| TTCCATAGCATAATAGAACC+TGG | + | chr5_4:49375622-49375641 | None:intergenic | 35.0% | |
| CTATGTACACTTCTACTTCA+TGG | - | chr5_4:49375729-49375748 | Msa0855690:intron | 35.0% | |
| ! | AGACCTCCTTTTATTATGAG+GGG | + | chr5_4:49375831-49375850 | None:intergenic | 35.0% |
| ! | CAGACCTCCTTTTATTATGA+GGG | + | chr5_4:49375832-49375851 | None:intergenic | 35.0% |
| ! | ACAGACCTCCTTTTATTATG+AGG | + | chr5_4:49375833-49375852 | None:intergenic | 35.0% |
| CATAATAAAAGGAGGTCTGT+CGG | - | chr5_4:49375833-49375852 | Msa0855690:intron | 35.0% | |
| GTATCGTCTTCAATAGATGT+TGG | + | chr5_4:49375956-49375975 | None:intergenic | 35.0% | |
| TATGAAAACGAGAAGGTCAA+TGG | - | chr5_4:49376123-49376142 | Msa0855690:CDS | 35.0% | |
| GAAAGAGCTAGGTTAGAAGA+TGG | - | chr5_4:49372396-49372415 | Msa0855690:three_prime_UTR | 40.0% | |
| TTAACATGGACATCACACCT+TGG | - | chr5_4:49372448-49372467 | Msa0855690:CDS | 40.0% | |
| !! | AAGAGAGTGTTGAGATTGGT+CGG | + | chr5_4:49372500-49372519 | None:intergenic | 40.0% |
| !! | AGGAAAGAGAGTGTTGAGAT+TGG | + | chr5_4:49372504-49372523 | None:intergenic | 40.0% |
| TGCTGTGAGAGATCTTAAGA+GGG | - | chr5_4:49372757-49372776 | Msa0855690:CDS | 40.0% | |
| ! | AGCTATGTCTTGCTGTCAAT+AGG | - | chr5_4:49372849-49372868 | Msa0855690:CDS | 40.0% |
| AACAGAGTCTGATCAAGAGA+CGG | - | chr5_4:49372970-49372989 | Msa0855690:CDS | 40.0% | |
| AAGAGACGGACCTAATTAAC+AGG | - | chr5_4:49372984-49373003 | Msa0855690:CDS | 40.0% | |
| ACATCACATTGGACTCATGA+AGG | + | chr5_4:49373173-49373192 | None:intergenic | 40.0% | |
| TTGTTCACGTGTTACAACAG+TGG | - | chr5_4:49373226-49373245 | Msa0855690:intron | 40.0% | |
| CCCATCAAGTCAACAAATTG+AGG | + | chr5_4:49373350-49373369 | None:intergenic | 40.0% | |
| ACAAATGTCTACGCCTTAAC+AGG | + | chr5_4:49373797-49373816 | None:intergenic | 40.0% | |
| !! | ACATTTGGTGGACTGTAAAC+TGG | + | chr5_4:49373841-49373860 | None:intergenic | 40.0% |
| !! | TTTATGAACTGGACTGGCAT+GGG | + | chr5_4:49373906-49373925 | None:intergenic | 40.0% |
| ATTGCACACTTCAGGCAATT+TGG | + | chr5_4:49373929-49373948 | None:intergenic | 40.0% | |
| TCTCTAACATTGCACACTTC+AGG | + | chr5_4:49373937-49373956 | None:intergenic | 40.0% | |
| GACTAATGGTCTGTTTGGAT+TGG | - | chr5_4:49373955-49373974 | Msa0855690:intron | 40.0% | |
| CATAAGCGCTCATCATGATA+AGG | - | chr5_4:49374170-49374189 | Msa0855690:CDS | 40.0% | |
| GTTGTCCAAACAGGTCTAAA+TGG | - | chr5_4:49374221-49374240 | Msa0855690:CDS | 40.0% | |
| CTTGACCATTTAGACCTGTT+TGG | + | chr5_4:49374229-49374248 | None:intergenic | 40.0% | |
| ! | TGAGCCTACTTGTTAGGATT+TGG | - | chr5_4:49374340-49374359 | Msa0855690:intron | 40.0% |
| GTAAGGGAAAGACTTCAAGA+TGG | - | chr5_4:49374474-49374493 | Msa0855690:intron | 40.0% | |
| AAACATGAGTTCCTCCATCA+AGG | + | chr5_4:49374778-49374797 | None:intergenic | 40.0% | |
| TTAGTAAGCTCATGCCTTTC+TGG | - | chr5_4:49374847-49374866 | Msa0855690:intron | 40.0% | |
| CATTGATCCTAGTACCAGAA+AGG | + | chr5_4:49374864-49374883 | None:intergenic | 40.0% | |
| GACAAGTAATGCGCATGAAA+AGG | + | chr5_4:49374959-49374978 | None:intergenic | 40.0% | |
| TCGGACATTGCATATACCAT+GGG | - | chr5_4:49375076-49375095 | Msa0855690:intron | 40.0% | |
| GCCAGGACAAATTACAAGAA+AGG | - | chr5_4:49375302-49375321 | Msa0855690:intron | 40.0% | |
| ! | GCCTTTCTTGTAATTTGTCC+TGG | + | chr5_4:49375306-49375325 | None:intergenic | 40.0% |
| AAATTACAAGAAAGGCGACC+AGG | - | chr5_4:49375310-49375329 | Msa0855690:intron | 40.0% | |
| ! | GACAGGCAACAATTTGTTTC+TGG | + | chr5_4:49375449-49375468 | None:intergenic | 40.0% |
| CACCAGGTTCTATTATGCTA+TGG | - | chr5_4:49375617-49375636 | Msa0855690:intron | 40.0% | |
| TTGGAGCTTCTTGAACACTA+TGG | - | chr5_4:49375653-49375672 | Msa0855690:intron | 40.0% | |
| TGTACATAGCAGGTTCCAAA+GGG | + | chr5_4:49375718-49375737 | None:intergenic | 40.0% | |
| ! | GAAGTAGAAGTGTACATAGC+AGG | + | chr5_4:49375728-49375747 | None:intergenic | 40.0% |
| CACTTCTACTTCATGGTCTA+AGG | - | chr5_4:49375736-49375755 | Msa0855690:intron | 40.0% | |
| TCACTCTATATCCATCCCAT+CGG | - | chr5_4:49375761-49375780 | Msa0855690:intron | 40.0% | |
| CAACCCCTCATAATAAAAGG+AGG | - | chr5_4:49375825-49375844 | Msa0855690:intron | 40.0% | |
| TACCTTACTCCTGAATGCAT+TGG | - | chr5_4:49375973-49375992 | Msa0855690:intron | 40.0% | |
| AAACGAGAAGGTCAATGGAT+AGG | - | chr5_4:49376128-49376147 | Msa0855690:CDS | 40.0% | |
| GGTGGAAATTAGCTGTCTTA+TGG | - | chr5_4:49376149-49376168 | Msa0855690:CDS | 40.0% | |
| GGAAATTAGCTGTCTTATGG+AGG | - | chr5_4:49376152-49376171 | Msa0855690:CDS | 40.0% | |
| !! | GATTGGTCGGTGTTTGTTGT+TGG | + | chr5_4:49372487-49372506 | None:intergenic | 45.0% |
| CAACACTCTCTTTCCTCTCT+TGG | - | chr5_4:49372508-49372527 | Msa0855690:CDS | 45.0% | |
| GTTTCTACCTTTCCTCACTC+TGG | - | chr5_4:49372544-49372563 | Msa0855690:CDS | 45.0% | |
| TTTGGAGAATGGTGCAGTAG+AGG | - | chr5_4:49372728-49372747 | Msa0855690:CDS | 45.0% | |
| AGAATGGTGCAGTAGAGGTT+TGG | - | chr5_4:49372733-49372752 | Msa0855690:CDS | 45.0% | |
| GAATGGTGCAGTAGAGGTTT+GGG | - | chr5_4:49372734-49372753 | Msa0855690:CDS | 45.0% | |
| GTGCTGTGAGAGATCTTAAG+AGG | - | chr5_4:49372756-49372775 | Msa0855690:CDS | 45.0% | |
| GCTGTGAGAGATCTTAAGAG+GGG | - | chr5_4:49372758-49372777 | Msa0855690:CDS | 45.0% | |
| TTCTTCTCTCTCCTCTGTTC+AGG | - | chr5_4:49372874-49372893 | Msa0855690:CDS | 45.0% | |
| ATTGTAAGGAGCAGACGATC+TGG | - | chr5_4:49373051-49373070 | Msa0855690:intron | 45.0% | |
| TCGCTCTAGTCCCTTTAGAT+CGG | - | chr5_4:49373126-49373145 | Msa0855690:intron | 45.0% | |
| GCTACAACTGTGCATGGATT+AGG | - | chr5_4:49373393-49373412 | Msa0855690:CDS | 45.0% | |
| AGGTCGTGAGACACTTGAAT+GGG | - | chr5_4:49373542-49373561 | Msa0855690:CDS | 45.0% | |
| !! | CTGTGCAAATCAGCTTGTTG+TGG | + | chr5_4:49373569-49373588 | None:intergenic | 45.0% |
| TCAAGATATAGCGAGCCACA+TGG | - | chr5_4:49373730-49373749 | Msa0855690:intron | 45.0% | |
| ATATAGCGAGCCACATGGTA+TGG | - | chr5_4:49373735-49373754 | Msa0855690:intron | 45.0% | |
| GTATAGACGACCATACCATG+TGG | + | chr5_4:49373748-49373767 | None:intergenic | 45.0% | |
| TTAACAGGCTTGACGTTTGG+TGG | + | chr5_4:49373782-49373801 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | - | chr5_4:49373781-49373800 | Msa0855690:intron | 45.0% | |
| !! | GGTGGACTGTAAACTGGTAT+GGG | + | chr5_4:49373835-49373854 | None:intergenic | 45.0% |
| !! | TGGTGGACTGTAAACTGGTA+TGG | + | chr5_4:49373836-49373855 | None:intergenic | 45.0% |
| !! | GTTTATGAACTGGACTGGCA+TGG | + | chr5_4:49373907-49373926 | None:intergenic | 45.0% |
| !! | AGGCATTGAGCCTACTTGTT+AGG | - | chr5_4:49374334-49374353 | Msa0855690:intron | 45.0% |
| AGTCGTAACTTTGCGGCAAA+TGG | + | chr5_4:49374514-49374533 | None:intergenic | 45.0% | |
| GCTAGCAAGTCGTAACTTTG+CGG | + | chr5_4:49374521-49374540 | None:intergenic | 45.0% | |
| !! | TACGACTTGCTAGCCATGTT+TGG | - | chr5_4:49374527-49374546 | Msa0855690:intron | 45.0% |
| ATCAGGTGGATGAAGCTATG+TGG | - | chr5_4:49374700-49374719 | Msa0855690:intron | 45.0% | |
| GAAAGAAGCTCATGCCTTGA+TGG | - | chr5_4:49374761-49374780 | Msa0855690:intron | 45.0% | |
| GCAATGTCCGAGAAGATATC+TGG | + | chr5_4:49375067-49375086 | None:intergenic | 45.0% | |
| CTCGGACATTGCATATACCA+TGG | - | chr5_4:49375075-49375094 | Msa0855690:intron | 45.0% | |
| CATATACCATGGGATGAAGC+TGG | - | chr5_4:49375086-49375105 | Msa0855690:intron | 45.0% | |
| AAACAACCAGCTTCATCCCA+TGG | + | chr5_4:49375095-49375114 | None:intergenic | 45.0% | |
| TAATTACGATGCACCTGGAG+AGG | - | chr5_4:49375136-49375155 | Msa0855690:intron | 45.0% | |
| CTACGTCGTCAATACCAGAT+AGG | + | chr5_4:49375163-49375182 | None:intergenic | 45.0% | |
| TCTCAGAGACTAACTGATGG+TGG | - | chr5_4:49375245-49375264 | Msa0855690:intron | 45.0% | |
| CTCAGAGACTAACTGATGGT+GGG | - | chr5_4:49375246-49375265 | Msa0855690:intron | 45.0% | |
| GTGTACATAGCAGGTTCCAA+AGG | + | chr5_4:49375719-49375738 | None:intergenic | 45.0% | |
| ! | GCAAACGAAGGTTTTCCGAT+GGG | + | chr5_4:49375779-49375798 | None:intergenic | 45.0% |
| ! | TTCTAGCTGCGTTACGATTG+TGG | - | chr5_4:49375801-49375820 | Msa0855690:intron | 45.0% |
| TCTAGCTGCGTTACGATTGT+GGG | - | chr5_4:49375802-49375821 | Msa0855690:intron | 45.0% | |
| GGGCAACCCCTCATAATAAA+AGG | - | chr5_4:49375822-49375841 | Msa0855690:intron | 45.0% | |
| GTCGGACATCTTGCATATTC+TGG | - | chr5_4:49375851-49375870 | Msa0855690:intron | 45.0% | |
| CTCCAATGCATTCAGGAGTA+AGG | + | chr5_4:49375978-49375997 | None:intergenic | 45.0% | |
| GACTACACTCCAATGCATTC+AGG | + | chr5_4:49375985-49376004 | None:intergenic | 45.0% | |
| TTAGCTGTCTTATGGAGGCT+CGG | - | chr5_4:49376157-49376176 | Msa0855690:CDS | 45.0% | |
| !! | GTGCGAGTTCTGAAAGAGCT+AGG | - | chr5_4:49372385-49372404 | Msa0855690:three_prime_UTR | 50.0% |
| GCAGAGAGAATGACCAAGAG+AGG | + | chr5_4:49372524-49372543 | None:intergenic | 50.0% | |
| TCTACCTTTCCTCACTCTGG+CGG | - | chr5_4:49372547-49372566 | Msa0855690:CDS | 50.0% | |
| ! | CGATCTGGTTCCTGCAGTTA+AGG | - | chr5_4:49373066-49373085 | Msa0855690:intron | 50.0% |
| TTACAACAGTGGAGCTGCCT+AGG | - | chr5_4:49373237-49373256 | Msa0855690:intron | 50.0% | |
| GTATTCTTGGAGCTCCTCCT+AGG | + | chr5_4:49373257-49373276 | None:intergenic | 50.0% | |
| ! | TGACTTGATGGGTCTCTCGT+TGG | - | chr5_4:49373358-49373377 | Msa0855690:CDS | 50.0% |
| ! | TTGATGGGTCTCTCGTTGGT+TGG | - | chr5_4:49373362-49373381 | Msa0855690:CDS | 50.0% |
| TCAACTTCACGTGCGCTGTA+TGG | + | chr5_4:49373430-49373449 | None:intergenic | 50.0% | |
| CGTTATTCGTACGTGACACG+CGG | - | chr5_4:49373471-49373490 | Msa0855690:CDS | 50.0% | |
| CAGGTCGTGAGACACTTGAA+TGG | - | chr5_4:49373541-49373560 | Msa0855690:CDS | 50.0% | |
| GGTCGTGAGACACTTGAATG+GGG | - | chr5_4:49373543-49373562 | Msa0855690:CDS | 50.0% | |
| ! | CTGATTTGCACAGCCCAGTT+GGG | - | chr5_4:49373576-49373595 | Msa0855690:CDS | 50.0% |
| ! | TGATTTGCACAGCCCAGTTG+GGG | - | chr5_4:49373577-49373596 | Msa0855690:CDS | 50.0% |
| TGAAAGCCAAGCTAGTGCTG+AGG | - | chr5_4:49373626-49373645 | Msa0855690:intron | 50.0% | |
| GTGCTGAGGCTGGACTTTAT+TGG | - | chr5_4:49373640-49373659 | Msa0855690:intron | 50.0% | |
| AGGCTGGACTTTATTGGACG+AGG | - | chr5_4:49373646-49373665 | Msa0855690:intron | 50.0% | |
| ! | CACTCAAACCAGTGCTGAGT+TGG | - | chr5_4:49373688-49373707 | Msa0855690:intron | 50.0% |
| AGCAAGATCCAACTCAGCAC+TGG | + | chr5_4:49373699-49373718 | None:intergenic | 50.0% | |
| GTGGCTCGCTATATCTTGAC+TGG | + | chr5_4:49373729-49373748 | None:intergenic | 50.0% | |
| !! | ACGTTTGGTGGACTGTGGTT+TGG | + | chr5_4:49373770-49373789 | None:intergenic | 50.0% |
| GCCTTAACAGGCTTGACGTT+TGG | + | chr5_4:49373785-49373804 | None:intergenic | 50.0% | |
| AACTTTGCGGCAAATGGACG+AGG | + | chr5_4:49374508-49374527 | None:intergenic | 50.0% | |
| AGAAGCTCATGCCTTGATGG+AGG | - | chr5_4:49374764-49374783 | Msa0855690:intron | 50.0% | |
| ! | GCTCATGCCTTTCTGGTACT+AGG | - | chr5_4:49374854-49374873 | Msa0855690:intron | 50.0% |
| GCTGGTTGTTTATGCCCTGT+TGG | - | chr5_4:49375104-49375123 | Msa0855690:intron | 50.0% | |
| ATACCAGATAGGTCCTCTCC+AGG | + | chr5_4:49375152-49375171 | None:intergenic | 50.0% | |
| ACCAGGTAGTGCACAACTCT+TGG | - | chr5_4:49375327-49375346 | Msa0855690:intron | 50.0% | |
| TCCAAGAGTTGTGCACTACC+TGG | + | chr5_4:49375331-49375350 | None:intergenic | 50.0% | |
| ! | ACGAAGGTTTTCCGATGGGA+TGG | + | chr5_4:49375775-49375794 | None:intergenic | 50.0% |
| ! | CGCAAACGAAGGTTTTCCGA+TGG | + | chr5_4:49375780-49375799 | None:intergenic | 50.0% |
| CGAGAAGGTCAATGGATAGG+TGG | - | chr5_4:49376131-49376150 | Msa0855690:CDS | 50.0% | |
| TAGCTGTCTTATGGAGGCTC+GGG | - | chr5_4:49376158-49376177 | Msa0855690:CDS | 50.0% | |
| CTACCTTTCCTCACTCTGGC+GGG | - | chr5_4:49372548-49372567 | Msa0855690:CDS | 55.0% | |
| TTACCCGCCAGAGTGAGGAA+AGG | + | chr5_4:49372554-49372573 | None:intergenic | 55.0% | |
| ! | CTCTCGTTGGTTGGCTGGTA+CGG | - | chr5_4:49373371-49373390 | Msa0855690:CDS | 55.0% |
| GGTACGGCTACAACTGTGCA+TGG | - | chr5_4:49373387-49373406 | Msa0855690:CDS | 55.0% | |
| GCTTACGTAACTGTGCTGCG+TGG | - | chr5_4:49373518-49373537 | Msa0855690:CDS | 55.0% | |
| !! | GCTGATTTGCACAGCCCAGT+TGG | - | chr5_4:49373575-49373594 | Msa0855690:CDS | 55.0% |
| GATTTGCACAGCCCAGTTGG+GGG | - | chr5_4:49373578-49373597 | Msa0855690:CDS | 55.0% | |
| !! | GCTTGACGTTTGGTGGACTG+TGG | + | chr5_4:49373775-49373794 | None:intergenic | 55.0% |
| TGCGGCAAATGGACGAGGTA+AGG | + | chr5_4:49374503-49374522 | None:intergenic | 55.0% | |
| TTGGGTTTGGGCTGCTGCAA+CGG | - | chr5_4:49374824-49374843 | Msa0855690:intron | 55.0% | |
| ! | GCAGCTAGAAGCGCAAACGA+AGG | + | chr5_4:49375791-49375810 | None:intergenic | 55.0% |
| CAACAGTGGAGCTGCCTAGG+AGG | - | chr5_4:49373240-49373259 | Msa0855690:intron | 60.0% | |
| ! | TGGGTCTCTCGTTGGTTGGC+TGG | - | chr5_4:49373366-49373385 | Msa0855690:CDS | 60.0% |
| ACGTAACTGTGCTGCGTGGC+AGG | - | chr5_4:49373522-49373541 | Msa0855690:CDS | 60.0% | |
| ! | AGCCAAGCTAGTGCTGAGGC+TGG | - | chr5_4:49373630-49373649 | Msa0855690:intron | 60.0% |
| GTCCAGCCTCAGCACTAGCT+TGG | + | chr5_4:49373635-49373654 | None:intergenic | 60.0% | |
| GCACCTGGAGAGGACCTATC+TGG | - | chr5_4:49375146-49375165 | Msa0855690:intron | 60.0% | |
| GGGAGTTACCCGCCAGAGTG+AGG | + | chr5_4:49372559-49372578 | None:intergenic | 65.0% | |
| ! | AGCCCAGTTGGGGGCGCGCT+TGG | - | chr5_4:49373587-49373606 | Msa0855690:CDS | 75.0% |
| CGCCAAGCGCGCCCCCAACT+GGG | + | chr5_4:49373592-49373611 | None:intergenic | 75.0% | |
| ACGCCAAGCGCGCCCCCAAC+TGG | + | chr5_4:49373593-49373612 | None:intergenic | 75.0% | |
| ! | AGTTGGGGGCGCGCTTGGCG+TGG | - | chr5_4:49373592-49373611 | Msa0855690:intron | 75.0% |
| !! | GGGGGCGCGCTTGGCGTGGT+TGG | - | chr5_4:49373596-49373615 | Msa0855690:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 49372365 | 49376313 | 49372365 | ID=Msa0855690;Name=Msa0855690 |
| chr5_4 | mRNA | 49372365 | 49376313 | 49372365 | ID=Msa0855690-mRNA-1;Parent=Msa0855690;Name=Msa0855690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=50|0.8|0.66|1|0.8|0.66|6|67|477 |
| chr5_4 | exon | 49372365 | 49373055 | 49372365 | ID=Msa0855690-mRNA-1:exon:15540;Parent=Msa0855690-mRNA-1 |
| chr5_4 | exon | 49373347 | 49373610 | 49373347 | ID=Msa0855690-mRNA-1:exon:15539;Parent=Msa0855690-mRNA-1 |
| chr5_4 | exon | 49373833 | 49373973 | 49373833 | ID=Msa0855690-mRNA-1:exon:15538;Parent=Msa0855690-mRNA-1 |
| chr5_4 | exon | 49374104 | 49374276 | 49374104 | ID=Msa0855690-mRNA-1:exon:15537;Parent=Msa0855690-mRNA-1 |
| chr5_4 | exon | 49375857 | 49375933 | 49375857 | ID=Msa0855690-mRNA-1:exon:15536;Parent=Msa0855690-mRNA-1 |
| chr5_4 | exon | 49376109 | 49376313 | 49376109 | ID=Msa0855690-mRNA-1:exon:15535;Parent=Msa0855690-mRNA-1 |
| chr5_4 | five_prime_UTR | 49376264 | 49376313 | 49376264 | ID=Msa0855690-mRNA-1:five_prime_utr;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49376109 | 49376263 | 49376109 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49375857 | 49375933 | 49375857 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49374104 | 49374276 | 49374104 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49373833 | 49373973 | 49373833 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49373347 | 49373610 | 49373347 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | CDS | 49372432 | 49373055 | 49372432 | ID=Msa0855690-mRNA-1:cds;Parent=Msa0855690-mRNA-1 |
| chr5_4 | three_prime_UTR | 49372365 | 49372431 | 49372365 | ID=Msa0855690-mRNA-1:three_prime_utr;Parent=Msa0855690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
