AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0855990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855990 MtrunA17_Chr5g0433851 89.231 195 10 1 157 340 226 420 1.12e-121 356
Msa0855990 MtrunA17_Chr5g0433851 92.941 170 12 0 1 170 1 170 2.34e-101 305
Msa0855990 MtrunA17_Chr3g0109791 50.735 272 69 4 4 211 19 289 2.17e-67 215
Msa0855990 MtrunA17_Chr6g0481061 70.909 110 32 0 24 133 38 147 1.03e-39 145
Msa0855990 MtrunA17_Chr1g0181771 44.025 159 64 4 24 182 28 161 5.23e-35 129
Msa0855990 MtrunA17_Chr7g0276421 67.619 105 32 1 23 125 6 110 4.89e-33 129
Msa0855990 MtrunA17_Chr6g0469431 55.882 102 37 2 28 129 35 128 1.12e-31 119
Msa0855990 MtrunA17_Chr8g0348391 58.511 94 31 1 32 125 53 138 1.91e-31 120
Msa0855990 MtrunA17_Chr4g0030281 78.571 42 9 0 154 195 187 228 2.90e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0855990 AT5G17300.1 45.000 300 108 10 21 271 33 324 4.83e-49 169
Msa0855990 AT5G37260.1 50.000 204 73 6 23 208 16 208 7.88e-42 147
Msa0855990 AT3G10113.1 35.562 329 151 7 28 338 50 335 2.16e-40 145
Msa0855990 AT1G18330.1 34.877 324 185 8 28 338 35 345 3.51e-38 139
Msa0855990 AT1G18330.2 34.877 324 185 8 28 338 61 371 4.93e-38 139
Msa0855990 AT3G09600.4 41.714 175 83 4 32 206 32 187 6.18e-33 124
Msa0855990 AT3G09600.1 41.714 175 83 4 32 206 32 187 7.88e-33 124
Msa0855990 AT3G09600.7 41.714 175 83 4 32 206 32 187 7.88e-33 124
Msa0855990 AT3G09600.2 41.714 175 83 4 32 206 32 187 8.15e-33 123
Msa0855990 AT3G09600.6 41.714 175 83 4 32 206 32 187 8.15e-33 123
Msa0855990 AT2G46830.1 64.706 85 30 0 24 108 5 89 1.33e-32 128
Msa0855990 AT1G01060.4 64.486 107 36 1 20 124 1 107 1.08e-31 125
Msa0855990 AT1G01060.8 64.486 107 36 1 20 124 1 107 1.10e-31 125
Msa0855990 AT1G01060.2 64.486 107 36 1 20 124 1 107 1.10e-31 125
Msa0855990 AT1G01060.3 64.486 107 36 1 20 124 1 107 1.10e-31 125
Msa0855990 AT1G01060.1 64.486 107 36 1 20 124 1 107 1.10e-31 125
Msa0855990 AT1G01060.7 64.486 107 36 1 20 124 1 107 1.10e-31 125
Msa0855990 AT5G52660.2 56.122 98 35 1 28 125 57 146 8.29e-31 119
Msa0855990 AT5G52660.1 56.122 98 35 1 28 125 57 146 8.93e-31 119
Msa0855990 AT5G02840.4 51.304 115 47 3 32 145 37 143 2.45e-30 116
Msa0855990 AT5G02840.1 51.304 115 47 3 32 145 37 143 2.99e-30 117
Msa0855990 AT5G02840.2 51.304 115 47 3 32 145 37 143 2.99e-30 117
Msa0855990 AT4G01280.1 56.863 102 36 2 24 125 40 133 3.05e-30 117
Msa0855990 AT4G01280.2 56.863 102 36 2 24 125 40 133 3.17e-30 117
Msa0855990 AT5G02840.3 51.304 115 47 3 32 145 37 143 3.41e-30 116
Msa0855990 AT5G02840.5 51.304 115 47 3 32 145 37 143 4.76e-30 116
Msa0855990 AT1G01520.2 46.512 129 52 2 28 156 46 157 6.91e-30 115
Msa0855990 AT1G01520.4 46.512 129 52 2 28 156 46 157 6.91e-30 115
Msa0855990 AT1G01520.1 46.512 129 52 2 28 156 46 157 7.89e-30 115
Msa0855990 AT1G01520.3 46.512 129 52 2 28 156 46 157 8.22e-30 115
Msa0855990 AT5G17300.2 37.452 259 105 10 68 277 5 255 1.30e-17 82.8
Msa0855990 AT3G09600.5 32.877 146 79 3 61 206 5 131 1.09e-15 75.5
Msa0855990 AT3G09600.9 32.877 146 79 3 61 206 5 131 1.09e-15 75.5
Msa0855990 AT3G09600.3 32.877 146 79 3 61 206 5 131 1.34e-15 75.9
Msa0855990 AT3G09600.8 32.877 146 79 3 61 206 5 131 1.34e-15 75.9

Find 82 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATTCTATGGAGATTT+TGG 0.128871 5_4:-50276129 Msa0855990:intron
TTCAATTTACATCTATAAAA+TGG 0.182082 5_4:+50273393 None:intergenic
ACTTGTCTCTGAAGAAAATT+TGG 0.184574 5_4:-50276189 Msa0855990:five_prime_UTR
ATCACTTGATTCTGATTCTA+TGG 0.207453 5_4:-50276138 Msa0855990:exon
TCGCTCGTGTCATTAGATTT+TGG 0.279286 5_4:-50274503 Msa0855990:CDS
GTAATTCACATTATCACTTT+TGG 0.280046 5_4:+50273606 None:intergenic
TTAAGTGTAAGGTACGTATT+TGG 0.296154 5_4:-50273095 Msa0855990:three_prime_UTR
TGGTTGCGACACATTCTTTA+GGG 0.316667 5_4:+50273959 None:intergenic
AAGGGTTTGTACCATATAAA+AGG 0.320529 5_4:-50273531 Msa0855990:CDS
TCCTTTAAAGAAAATCCTAT+TGG 0.326367 5_4:+50273420 None:intergenic
CTCCTTGTGCAGTGGCTTGA+AGG 0.345306 5_4:+50273768 None:intergenic
GGATGAATCGGCTTCCGTTT+TGG 0.347869 5_4:+50274596 None:intergenic
TTGGTTGCGACACATTCTTT+AGG 0.358230 5_4:+50273958 None:intergenic
ACAGTGAGACTTAAAACATT+TGG 0.363877 5_4:-50273556 Msa0855990:CDS
AGAGAAAGATGAAGATAGAT+AGG 0.364142 5_4:+50276309 None:intergenic
CTTGAAGCTTTAAAGTTATA+CGG 0.366914 5_4:-50275062 Msa0855990:CDS
CCTTATAGTTCCCTCCCAAT+AGG 0.373169 5_4:-50273435 Msa0855990:exon
ACTGGATAATTCACAGTAGA+TGG 0.382341 5_4:+50273175 None:intergenic
TTCATGAAAGTTTAAGTGTA+AGG 0.382634 5_4:-50273106 Msa0855990:three_prime_UTR
CGTATAACTTTAAAGCTTCA+AGG 0.388114 5_4:+50275063 None:intergenic
CCTATTGGGAGGGAACTATA+AGG 0.389437 5_4:+50273435 None:intergenic
TGATGTTGAAGAAGACTTGC+AGG 0.391857 5_4:+50273864 None:intergenic
GTCTTGCAACTGTTGTTCCT+TGG 0.392635 5_4:-50273813 Msa0855990:CDS
AGACTTAAAACATTTGGAAA+AGG 0.403830 5_4:-50273550 Msa0855990:CDS
CCTTTAAAGAAAATCCTATT+GGG 0.410008 5_4:+50273421 None:intergenic
GTGGACTATTTCAGACAATT+CGG 0.423011 5_4:-50273791 Msa0855990:CDS
ATAGAGAACATATGAACAAT+TGG 0.430216 5_4:+50273065 None:intergenic
TAAAGTTATACGGTCGAGCC+TGG 0.431959 5_4:-50275052 Msa0855990:CDS
GTTTCTGTTGCCAGATTACA+TGG 0.434006 5_4:-50273354 Msa0855990:three_prime_UTR
GATAATGTGAATTACTTTGT+TGG 0.443037 5_4:-50273598 Msa0855990:CDS
TTCTTCTGCTACTACTTCGT+TGG 0.453914 5_4:+50273939 None:intergenic
TTGCAACTGTTGTTCCTTGG+TGG 0.457649 5_4:-50273810 Msa0855990:CDS
TTTACAATGGCCAAAGTGGC+AGG 0.459185 5_4:-50273227 Msa0855990:three_prime_UTR
CCCTCGGGCTCCTTGTGCAG+TGG 0.465390 5_4:+50273760 None:intergenic
GTTGCAAGACTAGCAGGAAT+AGG 0.468495 5_4:+50273826 None:intergenic
ACTGCAGATAATACCGACTT+TGG 0.472597 5_4:+50274464 None:intergenic
TTTAGGAAGTTATTACATCA+TGG 0.477399 5_4:+50273031 None:intergenic
GACTTAAAACATTTGGAAAA+GGG 0.481341 5_4:-50273549 Msa0855990:CDS
TCAACTACTTTACGTGGGTA+AGG 0.488398 5_4:+50274575 None:intergenic
AATACAAAAGCCTGCCACTT+TGG 0.489088 5_4:+50273217 None:intergenic
GAATGAAGGGAGAACCTTCA+AGG 0.489688 5_4:+50275252 None:intergenic
AAGGAAGGATCTTCTTGTGT+TGG 0.490240 5_4:-50273688 Msa0855990:CDS
TTACGTGGGTAAGGATGAAT+CGG 0.497072 5_4:+50274584 None:intergenic
TGGAAATGACCATGCCTTGA+AGG 0.504748 5_4:-50275266 Msa0855990:intron
GTATCAGAAAAGAGAGAGAT+GGG 0.510121 5_4:-50273332 Msa0855990:three_prime_UTR
ACAACAGTTGCAAGACTAGC+AGG 0.513968 5_4:+50273820 None:intergenic
GGTATCAGAAAAGAGAGAGA+TGG 0.519013 5_4:-50273333 Msa0855990:three_prime_UTR
CGAAGATAAAGAAATTCAAA+AGG 0.522634 5_4:-50273707 Msa0855990:CDS
GATAAAGAAATTCAAAAGGA+AGG 0.531765 5_4:-50273703 Msa0855990:CDS
GCGATTTCAACTACTTTACG+TGG 0.532217 5_4:+50274569 None:intergenic
GCCACTGCACAAGGAGCCCG+AGG 0.547161 5_4:-50273761 Msa0855990:CDS
CCTCAGTGGCTGTTCCAAGT+TGG 0.552497 5_4:+50274532 None:intergenic
CTGTTTCACTTAGTGTAGTG+TGG 0.555752 5_4:+50273575 None:intergenic
AAGACTAGCAGGAATAGGTT+CGG 0.557239 5_4:+50273831 None:intergenic
TCACAAAACAGAGAGAAAAG+TGG 0.563691 5_4:-50275109 Msa0855990:CDS
GGCCTTCAAGCCACTGCACA+AGG 0.565013 5_4:-50273770 Msa0855990:CDS
TTAAAGAAAATCCTATTGGG+AGG 0.569251 5_4:+50273424 None:intergenic
TAAAGAAAATCCTATTGGGA+GGG 0.572184 5_4:+50273425 None:intergenic
CAATGTAACATACACTTGCA+TGG 0.572193 5_4:+50273002 None:intergenic
TGTAAGGTACGTATTTGGTA+AGG 0.572515 5_4:-50273090 Msa0855990:three_prime_UTR
CAGATCAATCGAGACACTGA+TGG 0.591725 5_4:-50274665 Msa0855990:CDS
TTCCACCTCCAAGACCAAAA+CGG 0.592397 5_4:-50274610 Msa0855990:CDS
AAAGAATGAAATCTCCAACT+TGG 0.596383 5_4:-50274546 Msa0855990:CDS
CAAGTCTTCTTCAACATCAA+CGG 0.596500 5_4:-50273860 Msa0855990:CDS
CGACAGTAACAGATGAGAGG+AGG 0.603195 5_4:-50273480 Msa0855990:CDS
CGATTTCAACTACTTTACGT+GGG 0.606836 5_4:+50274570 None:intergenic
AAGGGAGAACCTTCAAGGCA+TGG 0.608656 5_4:+50275257 None:intergenic
GACAGTAACAGATGAGAGGA+GGG 0.622093 5_4:-50273479 Msa0855990:CDS
ATGATGAAGAAAGCAATGAA+AGG 0.625912 5_4:-50273642 Msa0855990:CDS
AGAAAACAACTCTCCAAAGT+CGG 0.630200 5_4:-50274477 Msa0855990:intron
AGATCAATCGAGACACTGAT+GGG 0.631943 5_4:-50274664 Msa0855990:CDS
GGAGGGAACATCAACGCATG+AGG 0.635432 5_4:-50273462 Msa0855990:CDS
TGTACCATATAAAAGGTGCA+TGG 0.659379 5_4:-50273524 Msa0855990:CDS
GTTCGACAGTAACAGATGAG+AGG 0.674306 5_4:-50273483 Msa0855990:CDS
CCACTGCACAAGGAGCCCGA+GGG 0.677376 5_4:-50273760 Msa0855990:CDS
TGGGAATGACACAACAATGG+TGG 0.695952 5_4:-50274645 Msa0855990:CDS
CCAACTTGGAACAGCCACTG+AGG 0.697656 5_4:-50274532 Msa0855990:CDS
GGATAATTCACAGTAGATGG+CGG 0.698012 5_4:+50273178 None:intergenic
TTGTCTGAAATAGTCCACCA+AGG 0.714861 5_4:+50273796 None:intergenic
TGATGGGAATGACACAACAA+TGG 0.720056 5_4:-50274648 Msa0855990:CDS
AAAAGTTTGAGAGTTCGACA+AGG 0.741043 5_4:+50273913 None:intergenic
ACGAGCGAATTAGACCTCAG+TGG 0.785740 5_4:+50274518 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTGTATTTTATTCT+TGG - chr5_4:50273275-50273294 Msa0855990:three_prime_UTR 10.0%
!!! TTATTTTGTATTTTATTCTT+GGG - chr5_4:50273276-50273295 Msa0855990:three_prime_UTR 10.0%
!! AAAATAAATAAAAATCATGT+AGG - chr5_4:50273690-50273709 Msa0855990:CDS 10.0%
!! AAATAAATAAAAATCATGTA+GGG - chr5_4:50273691-50273710 Msa0855990:CDS 10.0%
!!! AAATTTATGTATACTTTTAT+AGG - chr5_4:50274160-50274179 Msa0855990:intron 10.0%
!! AATTAATAAATCAGAAAATA+TGG - chr5_4:50274368-50274387 Msa0855990:intron 10.0%
!!! ATAAATTTTCACTTAATATA+TGG + chr5_4:50274522-50274541 None:intergenic 10.0%
!! TTATTAAATCTATGCATATT+TGG + chr5_4:50273492-50273511 None:intergenic 15.0%
!! AATAAATAAAAATCATGTAG+GGG - chr5_4:50273692-50273711 Msa0855990:CDS 15.0%
!!! TAATTAAAAAGAGAGTATTT+TGG - chr5_4:50273829-50273848 Msa0855990:CDS 15.0%
!! GTAAAAAAAAAAATCCTTTA+TGG - chr5_4:50273851-50273870 Msa0855990:CDS 15.0%
!!! ATTTTATATGCTTTGATTTT+TGG - chr5_4:50274103-50274122 Msa0855990:intron 15.0%
!! TTCAATTTACATCTATAAAA+TGG + chr5_4:50275920-50275939 None:intergenic 15.0%
!!! TATTTTGTTTGTGTATGTTA+AGG - chr5_4:50273346-50273365 Msa0855990:three_prime_UTR 20.0%
!!! TAAATATATTGGTTGTGATT+TGG - chr5_4:50273449-50273468 Msa0855990:exon 20.0%
!!! GAAAAAAAGTTATTTTTGAG+TGG - chr5_4:50273543-50273562 Msa0855990:CDS 20.0%
!! TTCACTTAATATATGGTTTA+TGG + chr5_4:50274515-50274534 None:intergenic 20.0%
!! AAGTGAAAATTTATGATCAA+TGG - chr5_4:50274528-50274547 Msa0855990:CDS 20.0%
!! GATTTAAGAAATACCATTAA+AGG + chr5_4:50275056-50275075 None:intergenic 20.0%
!! TTAACAAAATGAAATAGGTT+AGG + chr5_4:50275078-50275097 None:intergenic 20.0%
!! TGCAATTAACAAAATGAAAT+AGG + chr5_4:50275083-50275102 None:intergenic 20.0%
!! CTCAATATGTAAGAAAAATT+AGG + chr5_4:50276049-50276068 None:intergenic 20.0%
!!! TACAAGACTTTTTTTTACAA+TGG - chr5_4:50276070-50276089 Msa0855990:intron 20.0%
! ATGGAATGGTTCAATTATTA+AGG - chr5_4:50273795-50273814 Msa0855990:CDS 25.0%
! TGGAATGGTTCAATTATTAA+GGG - chr5_4:50273796-50273815 Msa0855990:CDS 25.0%
! GACTAAAATCATAACCATAA+AGG + chr5_4:50273868-50273887 None:intergenic 25.0%
!!! TTGCTATTTGATCAATTTTC+AGG - chr5_4:50273960-50273979 Msa0855990:CDS 25.0%
!!! TGCTATTTGATCAATTTTCA+GGG - chr5_4:50273961-50273980 Msa0855990:CDS 25.0%
! CACAAATAGATAAGAATGAA+GGG + chr5_4:50274074-50274093 None:intergenic 25.0%
! TCACAAATAGATAAGAATGA+AGG + chr5_4:50274075-50274094 None:intergenic 25.0%
!! TATGTATACTTTTATAGGCA+AGG - chr5_4:50274165-50274184 Msa0855990:intron 25.0%
!!! CTTGAAGCTTTAAAGTTATA+CGG - chr5_4:50274248-50274267 Msa0855990:intron 25.0%
!!! AGTTTTGAATTTTCAGATCT+TGG - chr5_4:50274302-50274321 Msa0855990:intron 25.0%
!! GAAAATATGGTCTAAGTTTT+TGG - chr5_4:50274381-50274400 Msa0855990:intron 25.0%
!! TCATTTTGTTAATTGCAACA+AGG - chr5_4:50275086-50275105 Msa0855990:CDS 25.0%
! AGATCAAACATAAGAACAAA+AGG + chr5_4:50275304-50275323 None:intergenic 25.0%
! TCTTAATATTGTCTAGAAAC+TGG - chr5_4:50275321-50275340 Msa0855990:CDS 25.0%
! CGAAGATAAAGAAATTCAAA+AGG - chr5_4:50275603-50275622 Msa0855990:intron 25.0%
! GATAAAGAAATTCAAAAGGA+AGG - chr5_4:50275607-50275626 Msa0855990:intron 25.0%
!! GTAATTCACATTATCACTTT+TGG + chr5_4:50275707-50275726 None:intergenic 25.0%
! GATAATGTGAATTACTTTGT+TGG - chr5_4:50275712-50275731 Msa0855990:intron 25.0%
! AGACTTAAAACATTTGGAAA+AGG - chr5_4:50275760-50275779 Msa0855990:intron 25.0%
! GACTTAAAACATTTGGAAAA+GGG - chr5_4:50275761-50275780 Msa0855990:intron 25.0%
!! CCTTTAAAGAAAATCCTATT+GGG + chr5_4:50275892-50275911 None:intergenic 25.0%
!! TCCTTTAAAGAAAATCCTAT+TGG + chr5_4:50275893-50275912 None:intergenic 25.0%
! TTCATGAAAGTTTAAGTGTA+AGG - chr5_4:50276204-50276223 Msa0855990:five_prime_UTR 25.0%
! ATAGAGAACATATGAACAAT+TGG + chr5_4:50276248-50276267 None:intergenic 25.0%
! TTTAGGAAGTTATTACATCA+TGG + chr5_4:50276282-50276301 None:intergenic 25.0%
AGAGAAAGATGAAGATAGAT+AGG + chr5_4:50273004-50273023 None:intergenic 30.0%
AGTTGAAGAAAAACACAAGA+GGG + chr5_4:50273075-50273094 None:intergenic 30.0%
TAGTTGAAGAAAAACACAAG+AGG + chr5_4:50273076-50273095 None:intergenic 30.0%
! GTGTTTTTCTTCAACTATTG+AGG - chr5_4:50273079-50273098 Msa0855990:three_prime_UTR 30.0%
! ACTTGTCTCTGAAGAAAATT+TGG - chr5_4:50273121-50273140 Msa0855990:three_prime_UTR 30.0%
ATCACTTGATTCTGATTCTA+TGG - chr5_4:50273172-50273191 Msa0855990:three_prime_UTR 30.0%
! TTCTGATTCTATGGAGATTT+TGG - chr5_4:50273181-50273200 Msa0855990:three_prime_UTR 30.0%
! ATGAGATTGAGGTTGTTATT+TGG - chr5_4:50273319-50273338 Msa0855990:three_prime_UTR 30.0%
!! GTTTTTGATCTGATTTGTGT+TGG - chr5_4:50273371-50273390 Msa0855990:three_prime_UTR 30.0%
!! TTTTGAGTGGTTCTTGTTAA+TGG - chr5_4:50273556-50273575 Msa0855990:CDS 30.0%
AGAATATACCTAGCTAAACA+AGG - chr5_4:50273602-50273621 Msa0855990:CDS 30.0%
CAAAGTTAGTTACAAGGTTA+AGG + chr5_4:50273628-50273647 None:intergenic 30.0%
ACTCAACAAAGTTAGTTACA+AGG + chr5_4:50273634-50273653 None:intergenic 30.0%
! ATTTGGTTTATGTCTTCTTG+TGG - chr5_4:50273765-50273784 Msa0855990:CDS 30.0%
!! AATTTTCAGGGTCAAAAAGA+AGG - chr5_4:50273973-50273992 Msa0855990:CDS 30.0%
! CTACTTGATCAATTTTCATG+TGG - chr5_4:50274024-50274043 Msa0855990:intron 30.0%
! CTCTGTTTTGTGATAGTATA+TGG + chr5_4:50274194-50274213 None:intergenic 30.0%
!! CGTATAACTTTAAAGCTTCA+AGG + chr5_4:50274250-50274269 None:intergenic 30.0%
AAAGATTCTTCTTGCAAAAG+AGG - chr5_4:50274338-50274357 Msa0855990:intron 30.0%
!!! TGCTCAGAAGTTTTTTTCTA+AGG - chr5_4:50274464-50274483 Msa0855990:intron 30.0%
!!! ATTTTCAAGTTTCAACCTCA+AGG + chr5_4:50274580-50274599 None:intergenic 30.0%
AAAGAATGAAATCTCCAACT+TGG - chr5_4:50274764-50274783 Msa0855990:intron 30.0%
TCATGATATGCAACCTTTAA+TGG - chr5_4:50275040-50275059 Msa0855990:CDS 30.0%
ATGATGAAGAAAGCAATGAA+AGG - chr5_4:50275668-50275687 Msa0855990:intron 30.0%
ACAGTGAGACTTAAAACATT+TGG - chr5_4:50275754-50275773 Msa0855990:intron 30.0%
AAGGGTTTGTACCATATAAA+AGG - chr5_4:50275779-50275798 Msa0855990:intron 30.0%
TAAAGAAAATCCTATTGGGA+GGG + chr5_4:50275888-50275907 None:intergenic 30.0%
TTAAAGAAAATCCTATTGGG+AGG + chr5_4:50275889-50275908 None:intergenic 30.0%
! CCCAATAGGATTTTCTTTAA+AGG - chr5_4:50275889-50275908 Msa0855990:intron 30.0%
! TTTTCTGATACCATGTAATC+TGG + chr5_4:50275969-50275988 None:intergenic 30.0%
!! AAGAAAAATTAGGCTTGTTG+AGG + chr5_4:50276039-50276058 None:intergenic 30.0%
!!! TTTTTTTACAATGGCCAAAG+TGG - chr5_4:50276079-50276098 Msa0855990:intron 30.0%
CAGCTATAAGCTAAAAAAAC+TGG + chr5_4:50276156-50276175 None:intergenic 30.0%
TTAAGTGTAAGGTACGTATT+TGG - chr5_4:50276215-50276234 Msa0855990:five_prime_UTR 30.0%
! CACTTGCATGGTAAATTTTT+AGG + chr5_4:50276299-50276318 None:intergenic 30.0%
! GAGTCATCACAGTCTAATTT+TGG - chr5_4:50273650-50273669 Msa0855990:CDS 35.0%
GTAGGGGTAATTTGAATGAA+TGG - chr5_4:50273708-50273727 Msa0855990:CDS 35.0%
GGGTAATTTGAATGAATGGA+TGG - chr5_4:50273712-50273731 Msa0855990:CDS 35.0%
TCACAAAACAGAGAGAAAAG+TGG - chr5_4:50274201-50274220 Msa0855990:intron 35.0%
ATGTTCTGTGGTGAAAATGA+AGG + chr5_4:50274409-50274428 None:intergenic 35.0%
! ATTTTCACCACAGAACATGT+TGG - chr5_4:50274411-50274430 Msa0855990:intron 35.0%
AATTTATGATCAATGGCCCT+TGG - chr5_4:50274535-50274554 Msa0855990:CDS 35.0%
TTTGCATTTAGCATCTCCAA+GGG + chr5_4:50274554-50274573 None:intergenic 35.0%
CGATTTCAACTACTTTACGT+GGG + chr5_4:50274743-50274762 None:intergenic 35.0%
AGAAAACAACTCTCCAAAGT+CGG - chr5_4:50274833-50274852 Msa0855990:intron 35.0%
ATCTGAATCAGAGAAACCAA+GGG + chr5_4:50274883-50274902 None:intergenic 35.0%
TATCTGAATCAGAGAAACCA+AGG + chr5_4:50274884-50274903 None:intergenic 35.0%
! TTCCTCAGATGATGATGATT+TGG + chr5_4:50274979-50274998 None:intergenic 35.0%
CAAATAGATGAACTGAATGC+CGG - chr5_4:50275011-50275030 Msa0855990:intron 35.0%
! TTGCATATCATGAGTTGAAC+CGG + chr5_4:50275033-50275052 None:intergenic 35.0%
TAAGGCCTTGATTACGATAT+TGG - chr5_4:50275257-50275276 Msa0855990:intron 35.0%
CATGACCAATATCGTAATCA+AGG + chr5_4:50275265-50275284 None:intergenic 35.0%
AAAAGTTTGAGAGTTCGACA+AGG + chr5_4:50275400-50275419 None:intergenic 35.0%
! TGTCGAACTCTCAAACTTTT+TGG - chr5_4:50275400-50275419 Msa0855990:intron 35.0%
CAAGTCTTCTTCAACATCAA+CGG - chr5_4:50275450-50275469 Msa0855990:intron 35.0%
! GTGGACTATTTCAGACAATT+CGG - chr5_4:50275519-50275538 Msa0855990:intron 35.0%
! TGAATGTAGATGTTTTCCCT+CGG + chr5_4:50275569-50275588 None:intergenic 35.0%
! TGTACCATATAAAAGGTGCA+TGG - chr5_4:50275786-50275805 Msa0855990:intron 35.0%
GTATCAGAAAAGAGAGAGAT+GGG - chr5_4:50275978-50275997 Msa0855990:intron 35.0%
! TTTTGACATATCTGCTGCAT+TGG - chr5_4:50276009-50276028 Msa0855990:intron 35.0%
ACTGGATAATTCACAGTAGA+TGG + chr5_4:50276138-50276157 None:intergenic 35.0%
TGTAAGGTACGTATTTGGTA+AGG - chr5_4:50276220-50276239 Msa0855990:five_prime_UTR 35.0%
CAATGTAACATACACTTGCA+TGG + chr5_4:50276311-50276330 None:intergenic 35.0%
GAAAAACACAAGAGGGAAGA+GGG + chr5_4:50273068-50273087 None:intergenic 40.0%
AGAAAAACACAAGAGGGAAG+AGG + chr5_4:50273069-50273088 None:intergenic 40.0%
TTGTGAGGAACATGAGATTG+AGG - chr5_4:50273308-50273327 Msa0855990:three_prime_UTR 40.0%
TTATGTCTTCTTGTGGTGTG+TGG - chr5_4:50273772-50273791 Msa0855990:CDS 40.0%
! AATACCTTCGATTTTTCGCC+AGG + chr5_4:50274279-50274298 None:intergenic 40.0%
GTTTGCATTTAGCATCTCCA+AGG + chr5_4:50274555-50274574 None:intergenic 40.0%
GCTAAATGCAAACTTCCTTG+AGG - chr5_4:50274562-50274581 Msa0855990:CDS 40.0%
AGATCAATCGAGACACTGAT+GGG - chr5_4:50274646-50274665 Msa0855990:CDS 40.0%
TGATGGGAATGACACAACAA+TGG - chr5_4:50274662-50274681 Msa0855990:CDS 40.0%
TTACGTGGGTAAGGATGAAT+CGG + chr5_4:50274729-50274748 None:intergenic 40.0%
TCAACTACTTTACGTGGGTA+AGG + chr5_4:50274738-50274757 None:intergenic 40.0%
GCGATTTCAACTACTTTACG+TGG + chr5_4:50274744-50274763 None:intergenic 40.0%
!! TCGCTCGTGTCATTAGATTT+TGG - chr5_4:50274807-50274826 Msa0855990:intron 40.0%
!! ACTGCAGATAATACCGACTT+TGG + chr5_4:50274849-50274868 None:intergenic 40.0%
ACAGCACTAATAGATGAGAC+CGG + chr5_4:50274927-50274946 None:intergenic 40.0%
TCTATTAGTGCTGTCCATAC+CGG - chr5_4:50274933-50274952 Msa0855990:intron 40.0%
GTCCAAATCATCATCATCTG+AGG - chr5_4:50274974-50274993 Msa0855990:intron 40.0%
TGCTAATGCAACTCCAATCA+TGG + chr5_4:50275186-50275205 None:intergenic 40.0%
TGGTTGCGACACATTCTTTA+GGG + chr5_4:50275354-50275373 None:intergenic 40.0%
TTGGTTGCGACACATTCTTT+AGG + chr5_4:50275355-50275374 None:intergenic 40.0%
TTCTTCTGCTACTACTTCGT+TGG + chr5_4:50275374-50275393 None:intergenic 40.0%
TGATGTTGAAGAAGACTTGC+AGG + chr5_4:50275449-50275468 None:intergenic 40.0%
AAGACTAGCAGGAATAGGTT+CGG + chr5_4:50275482-50275501 None:intergenic 40.0%
! TTGTCTGAAATAGTCCACCA+AGG + chr5_4:50275517-50275536 None:intergenic 40.0%
! GAATGTAGATGTTTTCCCTC+GGG + chr5_4:50275568-50275587 None:intergenic 40.0%
AAGGAAGGATCTTCTTGTGT+TGG - chr5_4:50275622-50275641 Msa0855990:intron 40.0%
CTGTTTCACTTAGTGTAGTG+TGG + chr5_4:50275738-50275757 None:intergenic 40.0%
! TCTGCCATGCACCTTTTATA+TGG + chr5_4:50275793-50275812 None:intergenic 40.0%
GTTTCTGTTGCCAGATTACA+TGG - chr5_4:50275956-50275975 Msa0855990:intron 40.0%
GGTATCAGAAAAGAGAGAGA+TGG - chr5_4:50275977-50275996 Msa0855990:intron 40.0%
! AATACAAAAGCCTGCCACTT+TGG + chr5_4:50276096-50276115 None:intergenic 40.0%
GGATAATTCACAGTAGATGG+CGG + chr5_4:50276135-50276154 None:intergenic 40.0%
CTTGGGTTTGTGTCTTTGTG+AGG - chr5_4:50273293-50273312 Msa0855990:three_prime_UTR 45.0%
!! GGTTAAGGCCTTGTTTAGCT+AGG + chr5_4:50273613-50273632 None:intergenic 45.0%
TGGAAATGACCATGCCTTGA+AGG - chr5_4:50274044-50274063 Msa0855990:intron 45.0%
GAATGAAGGGAGAACCTTCA+AGG + chr5_4:50274061-50274080 None:intergenic 45.0%
TAAAGTTATACGGTCGAGCC+TGG - chr5_4:50274258-50274277 Msa0855990:intron 45.0%
CTTTGTGCCAACATGTTCTG+TGG + chr5_4:50274421-50274440 None:intergenic 45.0%
CAGATCAATCGAGACACTGA+TGG - chr5_4:50274645-50274664 Msa0855990:CDS 45.0%
TGGGAATGACACAACAATGG+TGG - chr5_4:50274665-50274684 Msa0855990:CDS 45.0%
TTCCACCTCCAAGACCAAAA+CGG - chr5_4:50274700-50274719 Msa0855990:intron 45.0%
AGCACTAATAGATGAGACCG+GGG + chr5_4:50274925-50274944 None:intergenic 45.0%
CAGCACTAATAGATGAGACC+GGG + chr5_4:50274926-50274945 None:intergenic 45.0%
GAAGTGGAAATCTACCGGTA+TGG + chr5_4:50274950-50274969 None:intergenic 45.0%
CTCGAGAAGTGGAAATCTAC+CGG + chr5_4:50274955-50274974 None:intergenic 45.0%
! GATGATTTGGACTCGAGAAG+TGG + chr5_4:50274966-50274985 None:intergenic 45.0%
! AAGGCCTTATGATGCAATCG+CGG + chr5_4:50275246-50275265 None:intergenic 45.0%
GTTGCAAGACTAGCAGGAAT+AGG + chr5_4:50275487-50275506 None:intergenic 45.0%
ACAACAGTTGCAAGACTAGC+AGG + chr5_4:50275493-50275512 None:intergenic 45.0%
GTCTTGCAACTGTTGTTCCT+TGG - chr5_4:50275497-50275516 Msa0855990:intron 45.0%
TTGCAACTGTTGTTCCTTGG+TGG - chr5_4:50275500-50275519 Msa0855990:intron 45.0%
GTTCGACAGTAACAGATGAG+AGG - chr5_4:50275827-50275846 Msa0855990:intron 45.0%
GACAGTAACAGATGAGAGGA+GGG - chr5_4:50275831-50275850 Msa0855990:intron 45.0%
CCTATTGGGAGGGAACTATA+AGG + chr5_4:50275878-50275897 None:intergenic 45.0%
CCTTATAGTTCCCTCCCAAT+AGG - chr5_4:50275875-50275894 Msa0855990:intron 45.0%
TTTACAATGGCCAAAGTGGC+AGG - chr5_4:50276083-50276102 Msa0855990:intron 45.0%
!! ATATAAAACTATAAATATAT+TGG - chr5_4:50273438-50273457 Msa0855990:exon 5.0%
!!! TTTTTTATTTTTATGATATT+TGG - chr5_4:50273748-50273767 Msa0855990:CDS 5.0%
GTCTTCTTGTGGTGTGTGGA+TGG - chr5_4:50273776-50273795 Msa0855990:CDS 50.0%
CTTGTGGTGTGTGGATGGAA+TGG - chr5_4:50273781-50273800 Msa0855990:CDS 50.0%
AAGGGAGAACCTTCAAGGCA+TGG + chr5_4:50274056-50274075 None:intergenic 50.0%
!!! TTCCGTTTTGGTCTTGGAGG+TGG + chr5_4:50274705-50274724 None:intergenic 50.0%
!! ATCGGCTTCCGTTTTGGTCT+TGG + chr5_4:50274711-50274730 None:intergenic 50.0%
!! GGATGAATCGGCTTCCGTTT+TGG + chr5_4:50274717-50274736 None:intergenic 50.0%
ACGAGCGAATTAGACCTCAG+TGG + chr5_4:50274795-50274814 None:intergenic 50.0%
GCAGTTGCTTCAGAAACCCT+TGG - chr5_4:50274864-50274883 Msa0855990:CDS 50.0%
TCTGATTCAGATACCCCCAC+CGG - chr5_4:50274891-50274910 Msa0855990:intron 50.0%
TCAGTCCATGATTGCAGTCG+CGG + chr5_4:50275126-50275145 None:intergenic 50.0%
ACTCCAATCATGGTCGCGTT+GGG + chr5_4:50275176-50275195 None:intergenic 50.0%
AACTCCAATCATGGTCGCGT+TGG + chr5_4:50275177-50275196 None:intergenic 50.0%
TGTCCCGCGATTGCATCATA+AGG - chr5_4:50275239-50275258 Msa0855990:intron 50.0%
! AGGCCTTATGATGCAATCGC+GGG + chr5_4:50275245-50275264 None:intergenic 50.0%
CGACAGTAACAGATGAGAGG+AGG - chr5_4:50275830-50275849 Msa0855990:intron 50.0%
CGAGCCTGGCGAAAAATCGA+AGG - chr5_4:50274272-50274291 Msa0855990:intron 55.0%
!!! GGCTTCCGTTTTGGTCTTGG+AGG + chr5_4:50274708-50274727 None:intergenic 55.0%
CCTCAGTGGCTGTTCCAAGT+TGG + chr5_4:50274781-50274800 None:intergenic 55.0%
CCAACTTGGAACAGCCACTG+AGG - chr5_4:50274778-50274797 Msa0855990:intron 55.0%
TGAGACCGGGGACAAACTTC+CGG + chr5_4:50274913-50274932 None:intergenic 55.0%
ACTGTCCGCGACTGCAATCA+TGG - chr5_4:50275118-50275137 Msa0855990:CDS 55.0%
CATCCCAACGCGACCATGAT+TGG - chr5_4:50275170-50275189 Msa0855990:intron 55.0%
CTCCTTGTGCAGTGGCTTGA+AGG + chr5_4:50275545-50275564 None:intergenic 55.0%
GGAGGGAACATCAACGCATG+AGG - chr5_4:50275848-50275867 Msa0855990:intron 55.0%
ACCGGGGACAAACTTCCGGT+GGG + chr5_4:50274909-50274928 None:intergenic 60.0%
GGCCTTCAAGCCACTGCACA+AGG - chr5_4:50275540-50275559 Msa0855990:intron 60.0%
CGGGGACAAACTTCCGGTGG+GGG + chr5_4:50274907-50274926 None:intergenic 65.0%
CCGGGGACAAACTTCCGGTG+GGG + chr5_4:50274908-50274927 None:intergenic 65.0%
CCCCACCGGAAGTTTGTCCC+CGG - chr5_4:50274905-50274924 Msa0855990:intron 65.0%
GACCGGGGACAAACTTCCGG+TGG + chr5_4:50274910-50274929 None:intergenic 65.0%
CCACTGCACAAGGAGCCCGA+GGG - chr5_4:50275550-50275569 Msa0855990:intron 65.0%
GCCACTGCACAAGGAGCCCG+AGG - chr5_4:50275549-50275568 Msa0855990:intron 70.0%
CCCTCGGGCTCCTTGTGCAG+TGG + chr5_4:50275553-50275572 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 50272988 50276344 50272988 ID=Msa0855990;Name=Msa0855990
chr5_4 mRNA 50272988 50276344 50272988 ID=Msa0855990-mRNA-1;Parent=Msa0855990;Name=Msa0855990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=203|0.8|0.83|1|0.8|0.83|6|462|340
chr5_4 exon 50272988 50273995 50272988 ID=Msa0855990-mRNA-1:exon:15711;Parent=Msa0855990-mRNA-1
chr5_4 exon 50274478 50274684 50274478 ID=Msa0855990-mRNA-1:exon:15710;Parent=Msa0855990-mRNA-1
chr5_4 exon 50274847 50274908 50274847 ID=Msa0855990-mRNA-1:exon:15709;Parent=Msa0855990-mRNA-1
chr5_4 exon 50275039 50275150 50275039 ID=Msa0855990-mRNA-1:exon:15708;Parent=Msa0855990-mRNA-1
chr5_4 exon 50275267 50275350 50275267 ID=Msa0855990-mRNA-1:exon:15707;Parent=Msa0855990-mRNA-1
chr5_4 exon 50276130 50276344 50276130 ID=Msa0855990-mRNA-1:exon:15706;Parent=Msa0855990-mRNA-1
chr5_4 five_prime_UTR 50276142 50276344 50276142 ID=Msa0855990-mRNA-1:five_prime_utr;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50276130 50276141 50276130 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50275267 50275350 50275267 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50275039 50275150 50275039 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50274847 50274908 50274847 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50274478 50274684 50274478 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 CDS 50273450 50273995 50273450 ID=Msa0855990-mRNA-1:cds;Parent=Msa0855990-mRNA-1
chr5_4 three_prime_UTR 50272988 50273449 50272988 ID=Msa0855990-mRNA-1:three_prime_utr;Parent=Msa0855990-mRNA-1
Gene Sequence

>Msa0855990

ATGGAGATTTTGGGTCAAAAAGAAGGAATGCATTCTGTTGTACATGTACAAAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCCTTGAAGGCAAGGAAACCATATACTATCACAAAACAGAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGTTATACGGTCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTGATGGGAATGACACAACAATGGTGGAGACAATTGAAATTCCACCTCCAAGACCAAAACGGAAGCCGATTCATCCTTACCCACGTAAAGTAGTTGAAATCGCAAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCGCTCGTGTCATTAGATTTTGGTCAAGAAAACAACTCTCCAAAGTCGAAACTGGAGCTTTTCCCTAAAGAATGTGTCGCAACCAACGAAGTAGTAGCAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAACAACTTTGTTAGTAAAAGATACCTGCAAGTCTTCTTCAACATCAACGGACGCATCCGAACCTATTCCTGCTAGTCTTGCAACTGTTGTTCCTTGGTGGACTATTTCAGACAATTCGGCCTTCAAGCCACTGCACAAGGAGCCCGAGGGAAAACATCTACATTCAAATCATGAAGAATGCGAAGATAAAGAAATTCAAAAGGAAGGATCTTCTTGTGTTGGTTCTAATAGCACTAGCTCAATGAATGATGAAGAAAGCAATGAAAGGTTAGACGATCAAGCCAAAAGTGATAATGTGAATTACTTTGTTGGCCACACTACACTAAGTGAAACAGTGAGACTTAAAACATTTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAAAGAGAACGACAATGTTCGACAGTAACAGATGAGAGGAGGGAACATCAACGCATGAGGCTTTCCTTATAG

Protein sequence

>Msa0855990

MEILGQKEGMHSVVHVQKLLDQFSCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTDGNDTTMVETIEIPPPRPKRKPIHPYPRKVVEIAKNEISNLEQPLRSNSLVSLDFGQENNSPKSKLELFPKECVATNEVVAEESPCRTLKLFGTTLLVKDTCKSSSTSTDASEPIPASLATVVPWWTISDNSAFKPLHKEPEGKHLHSNHEECEDKEIQKEGSSCVGSNSTSSMNDEESNERLDDQAKSDNVNYFVGHTTLSETVRLKTFGKGFVPYKRCMAERERQCSTVTDERREHQRMRLSL*