Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857090 | XP_003616452.1 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 1.59e-131 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857090 | sp|Q9LHS8|LBD33_ARATH | 52.406 | 187 | 73 | 3 | 1 | 187 | 1 | 171 | 1.43e-58 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857090 | G7KGT3 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 7.58e-132 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0857090 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857090 | MtrunA17_Chr5g0435641 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 1.46e-135 | 377 |
| Msa0857090 | MtrunA17_Chr7g0261031 | 55.405 | 148 | 61 | 2 | 1 | 147 | 2 | 145 | 1.95e-52 | 167 |
| Msa0857090 | MtrunA17_Chr1g0184271 | 68.627 | 102 | 32 | 0 | 8 | 109 | 13 | 114 | 7.27e-49 | 159 |
| Msa0857090 | MtrunA17_Chr7g0260971 | 65.000 | 100 | 35 | 0 | 2 | 101 | 9 | 108 | 3.74e-46 | 151 |
| Msa0857090 | MtrunA17_Chr1g0184281 | 49.655 | 145 | 59 | 2 | 5 | 149 | 13 | 143 | 3.46e-44 | 145 |
| Msa0857090 | MtrunA17_Chr8g0351721 | 59.434 | 106 | 43 | 0 | 5 | 110 | 16 | 121 | 6.90e-44 | 145 |
| Msa0857090 | MtrunA17_Chr8g0351701 | 62.264 | 106 | 40 | 0 | 8 | 113 | 24 | 129 | 6.93e-44 | 145 |
| Msa0857090 | MtrunA17_Chr6g0460951 | 42.932 | 191 | 79 | 5 | 6 | 170 | 39 | 225 | 8.08e-44 | 145 |
| Msa0857090 | MtrunA17_Chr7g0245871 | 63.636 | 99 | 36 | 0 | 8 | 106 | 28 | 126 | 4.91e-41 | 139 |
| Msa0857090 | MtrunA17_Chr7g0245861 | 64.130 | 92 | 31 | 2 | 5 | 94 | 10 | 101 | 1.50e-38 | 129 |
| Msa0857090 | MtrunA17_Chr7g0227511 | 55.670 | 97 | 42 | 1 | 6 | 102 | 10 | 105 | 3.86e-34 | 119 |
| Msa0857090 | MtrunA17_Chr3g0114061 | 54.082 | 98 | 44 | 1 | 6 | 103 | 7 | 103 | 2.09e-33 | 117 |
| Msa0857090 | MtrunA17_Chr2g0311601 | 54.545 | 99 | 44 | 1 | 3 | 101 | 9 | 106 | 5.65e-33 | 115 |
| Msa0857090 | MtrunA17_Chr4g0058651 | 39.412 | 170 | 87 | 4 | 4 | 171 | 8 | 163 | 7.88e-33 | 116 |
| Msa0857090 | MtrunA17_Chr5g0437571 | 46.825 | 126 | 61 | 2 | 3 | 123 | 2 | 126 | 1.93e-32 | 114 |
| Msa0857090 | MtrunA17_Chr6g0449641 | 52.577 | 97 | 45 | 1 | 6 | 102 | 8 | 103 | 3.68e-32 | 113 |
| Msa0857090 | MtrunA17_Chr3g0106101 | 47.934 | 121 | 56 | 3 | 3 | 117 | 2 | 121 | 3.70e-32 | 114 |
| Msa0857090 | MtrunA17_Chr3g0117121 | 51.485 | 101 | 48 | 1 | 2 | 102 | 5 | 104 | 4.31e-32 | 114 |
| Msa0857090 | MtrunA17_Chr4g0043421 | 50.495 | 101 | 49 | 1 | 3 | 103 | 11 | 110 | 9.60e-32 | 113 |
| Msa0857090 | MtrunA17_Chr6g0460941 | 54.255 | 94 | 43 | 0 | 1 | 94 | 1 | 94 | 1.70e-30 | 107 |
| Msa0857090 | MtrunA17_Chr5g0437401 | 44.340 | 106 | 58 | 1 | 5 | 110 | 9 | 113 | 2.19e-30 | 109 |
| Msa0857090 | MtrunA17_Chr5g0402611 | 52.577 | 97 | 45 | 1 | 6 | 102 | 7 | 102 | 2.24e-30 | 113 |
| Msa0857090 | MtrunA17_Chr3g0129071 | 51.515 | 99 | 47 | 1 | 6 | 104 | 46 | 143 | 2.85e-30 | 111 |
| Msa0857090 | MtrunA17_Chr5g0438091 | 50.505 | 99 | 48 | 1 | 6 | 104 | 38 | 135 | 2.97e-30 | 110 |
| Msa0857090 | MtrunA17_Chr6g0449651 | 51.546 | 97 | 46 | 1 | 6 | 102 | 66 | 161 | 4.19e-30 | 109 |
| Msa0857090 | MtrunA17_Chr3g0113891 | 47.959 | 98 | 50 | 1 | 6 | 103 | 13 | 109 | 5.44e-30 | 108 |
| Msa0857090 | MtrunA17_Chr3g0115431 | 46.667 | 105 | 55 | 1 | 5 | 109 | 7 | 110 | 8.45e-30 | 109 |
| Msa0857090 | MtrunA17_Chr3g0097221 | 45.872 | 109 | 58 | 1 | 1 | 109 | 1 | 108 | 1.22e-29 | 110 |
| Msa0857090 | MtrunA17_Chr4g0030001 | 46.903 | 113 | 51 | 3 | 6 | 117 | 23 | 127 | 7.90e-28 | 103 |
| Msa0857090 | MtrunA17_Chr5g0432451 | 53.659 | 82 | 37 | 1 | 6 | 87 | 42 | 122 | 1.67e-25 | 98.6 |
| Msa0857090 | MtrunA17_Chr1g0200201 | 46.809 | 94 | 49 | 1 | 8 | 101 | 73 | 165 | 3.02e-25 | 97.8 |
| Msa0857090 | MtrunA17_Chr8g0353981 | 50.575 | 87 | 42 | 1 | 1 | 87 | 1 | 86 | 7.92e-25 | 96.7 |
| Msa0857090 | MtrunA17_Chr7g0225111 | 42.308 | 104 | 59 | 1 | 6 | 109 | 4 | 106 | 5.96e-24 | 91.3 |
| Msa0857090 | MtrunA17_Chr5g0444351 | 42.157 | 102 | 58 | 1 | 8 | 109 | 6 | 106 | 1.07e-23 | 91.7 |
| Msa0857090 | MtrunA17_Chr4g0059901 | 38.384 | 99 | 60 | 1 | 3 | 101 | 6 | 103 | 9.15e-20 | 84.0 |
| Msa0857090 | MtrunA17_Chr8g0342351 | 34.351 | 131 | 75 | 3 | 7 | 129 | 12 | 139 | 1.65e-19 | 83.6 |
| Msa0857090 | MtrunA17_Chr6g0452691 | 35.922 | 103 | 64 | 2 | 8 | 109 | 10 | 111 | 1.59e-17 | 76.6 |
| Msa0857090 | MtrunA17_Chr8g0374591 | 37.864 | 103 | 63 | 1 | 8 | 110 | 9 | 110 | 3.35e-17 | 74.3 |
| Msa0857090 | MtrunA17_Chr8g0374601 | 37.255 | 102 | 63 | 1 | 8 | 109 | 27 | 127 | 3.56e-17 | 77.4 |
| Msa0857090 | MtrunA17_Chr4g0040831 | 33.333 | 102 | 67 | 1 | 3 | 104 | 11 | 111 | 7.09e-17 | 75.1 |
| Msa0857090 | MtrunA17_Chr6g0452671 | 39.506 | 81 | 48 | 1 | 7 | 87 | 11 | 90 | 3.79e-16 | 73.2 |
| Msa0857090 | MtrunA17_Chr2g0330201 | 31.683 | 101 | 68 | 1 | 3 | 103 | 15 | 114 | 5.65e-16 | 74.3 |
| Msa0857090 | MtrunA17_Chr6g0452661 | 32.381 | 105 | 69 | 2 | 6 | 109 | 8 | 111 | 7.08e-16 | 73.6 |
| Msa0857090 | MtrunA17_Chr5g0439111 | 33.333 | 105 | 68 | 2 | 6 | 109 | 8 | 111 | 2.81e-14 | 68.9 |
| Msa0857090 | MtrunA17_Chr8g0374581 | 35.789 | 95 | 59 | 2 | 8 | 101 | 9 | 102 | 1.25e-13 | 67.0 |
| Msa0857090 | MtrunA17_Chr4g0055441 | 30.097 | 103 | 70 | 2 | 8 | 109 | 3 | 104 | 6.19e-13 | 63.5 |
| Msa0857090 | MtrunA17_Chr2g0326041 | 52.083 | 48 | 22 | 1 | 6 | 53 | 32 | 78 | 1.89e-12 | 60.5 |
| Msa0857090 | MtrunA17_Chr4g0046201 | 31.111 | 90 | 61 | 1 | 6 | 95 | 5 | 93 | 2.03e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0857090 | AT5G06080.1 | 52.406 | 187 | 73 | 3 | 1 | 187 | 1 | 171 | 1.45e-59 | 184 |
| Msa0857090 | AT3G58190.1 | 68.868 | 106 | 33 | 0 | 8 | 113 | 12 | 117 | 1.26e-50 | 163 |
| Msa0857090 | AT2G42440.1 | 60.656 | 122 | 43 | 1 | 1 | 117 | 1 | 122 | 1.30e-49 | 161 |
| Msa0857090 | AT2G42430.1 | 60.526 | 114 | 45 | 0 | 3 | 116 | 11 | 124 | 4.94e-47 | 154 |
| Msa0857090 | AT3G03760.1 | 61.607 | 112 | 43 | 0 | 6 | 117 | 50 | 161 | 7.16e-47 | 155 |
| Msa0857090 | AT4G00210.1 | 64.000 | 100 | 36 | 0 | 2 | 101 | 6 | 105 | 3.28e-46 | 152 |
| Msa0857090 | AT2G31310.1 | 48.344 | 151 | 77 | 1 | 1 | 150 | 1 | 151 | 3.66e-45 | 148 |
| Msa0857090 | AT2G45420.1 | 65.347 | 101 | 35 | 0 | 10 | 110 | 40 | 140 | 9.97e-44 | 147 |
| Msa0857090 | AT4G00220.1 | 61.386 | 101 | 39 | 0 | 10 | 110 | 20 | 120 | 1.67e-41 | 140 |
| Msa0857090 | AT2G45410.1 | 60.870 | 92 | 36 | 0 | 10 | 101 | 19 | 110 | 8.67e-39 | 132 |
| Msa0857090 | AT3G27650.1 | 54.639 | 97 | 43 | 1 | 6 | 102 | 38 | 133 | 1.24e-33 | 117 |
| Msa0857090 | AT5G63090.4 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0857090 | AT5G63090.3 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0857090 | AT5G63090.2 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0857090 | AT5G63090.1 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0857090 | AT2G30130.1 | 51.923 | 104 | 48 | 2 | 1 | 103 | 1 | 103 | 4.43e-32 | 115 |
| Msa0857090 | AT1G31320.1 | 53.261 | 92 | 42 | 1 | 3 | 94 | 9 | 99 | 8.54e-31 | 110 |
| Msa0857090 | AT2G28500.1 | 46.018 | 113 | 55 | 2 | 6 | 113 | 54 | 165 | 7.64e-30 | 110 |
| Msa0857090 | AT5G66870.1 | 50.000 | 102 | 50 | 1 | 1 | 102 | 1 | 101 | 1.32e-29 | 111 |
| Msa0857090 | AT1G07900.1 | 46.429 | 112 | 52 | 2 | 6 | 117 | 32 | 135 | 2.50e-29 | 107 |
| Msa0857090 | AT2G30340.2 | 51.515 | 99 | 47 | 1 | 6 | 104 | 52 | 149 | 3.56e-29 | 109 |
| Msa0857090 | AT2G30340.1 | 50.495 | 101 | 49 | 1 | 6 | 106 | 51 | 150 | 4.09e-29 | 109 |
| Msa0857090 | AT3G11090.1 | 40.496 | 121 | 70 | 2 | 6 | 125 | 10 | 129 | 4.62e-29 | 106 |
| Msa0857090 | AT3G26660.1 | 40.171 | 117 | 69 | 1 | 6 | 122 | 4 | 119 | 6.50e-29 | 104 |
| Msa0857090 | AT3G26620.1 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 1.84e-28 | 103 |
| Msa0857090 | AT1G16530.1 | 50.515 | 97 | 46 | 2 | 6 | 101 | 13 | 108 | 2.03e-27 | 102 |
| Msa0857090 | AT2G23660.2 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0857090 | AT2G23660.3 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0857090 | AT2G23660.1 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0857090 | AT1G65620.1 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0857090 | AT1G65620.4 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0857090 | AT1G65620.3 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0857090 | AT1G65620.5 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0857090 | AT1G65620.2 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0857090 | AT2G40470.2 | 51.220 | 82 | 39 | 1 | 6 | 87 | 19 | 99 | 5.60e-25 | 96.7 |
| Msa0857090 | AT2G40470.1 | 51.220 | 82 | 39 | 1 | 6 | 87 | 44 | 124 | 8.75e-25 | 97.1 |
| Msa0857090 | AT3G50510.1 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.50e-24 | 94.4 |
| Msa0857090 | AT3G50510.2 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.50e-24 | 94.4 |
| Msa0857090 | AT3G13850.1 | 36.893 | 103 | 64 | 1 | 7 | 109 | 36 | 137 | 7.76e-20 | 84.7 |
| Msa0857090 | AT3G47870.1 | 32.075 | 106 | 71 | 1 | 3 | 108 | 32 | 136 | 1.31e-17 | 79.7 |
| Msa0857090 | AT5G35900.1 | 35.294 | 119 | 70 | 4 | 6 | 123 | 4 | 116 | 1.83e-17 | 77.0 |
| Msa0857090 | AT1G06280.1 | 36.842 | 76 | 47 | 1 | 7 | 82 | 24 | 98 | 4.33e-16 | 73.6 |
| Msa0857090 | AT1G72980.1 | 31.683 | 101 | 68 | 1 | 3 | 103 | 9 | 108 | 1.47e-13 | 67.0 |
| Msa0857090 | AT4G22700.1 | 33.333 | 96 | 61 | 2 | 8 | 102 | 6 | 99 | 4.65e-12 | 62.4 |
Find 39 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCAGTGCATAAGGTTTA+TGG | 0.160867 | 5_4:+52278564 | Msa0857090:CDS |
| CGCATGCAAGATCCTATTTA+TGG | 0.202738 | 5_4:+52278675 | Msa0857090:CDS |
| ATGATCCAAAACTTTGATTA+TGG | 0.255926 | 5_4:-52279505 | None:intergenic |
| AATTACCATAATCAAAGTTT+TGG | 0.265734 | 5_4:+52279500 | Msa0857090:CDS |
| CAAGAGGAGATAGATATTCT+TGG | 0.321470 | 5_4:+52279392 | Msa0857090:CDS |
| CTTTGGAAAATGACAGGGTT+TGG | 0.324866 | 5_4:+52278444 | None:intergenic |
| GGATTTCCAGAGCCTTTATA+TGG | 0.325475 | 5_4:+52279560 | Msa0857090:CDS |
| TCTGGAAATCCTTGTGCATT+AGG | 0.337625 | 5_4:-52279548 | None:intergenic |
| ACATTAGAGAAGTTCTTATC+AGG | 0.342216 | 5_4:+52279599 | Msa0857090:CDS |
| TGAGCAACACAACCATAAAT+AGG | 0.353770 | 5_4:-52278687 | None:intergenic |
| GCACCAATGAACTCAAATAA+TGG | 0.356387 | 5_4:+52279470 | Msa0857090:CDS |
| CACCCTTGGTTCAAGCATAA+TGG | 0.370662 | 5_4:+52279647 | Msa0857090:CDS |
| GTTCCATTATTTGAGTTCAT+TGG | 0.371818 | 5_4:-52279473 | None:intergenic |
| GCCTGTTCATAGGAGAAGTA+TGG | 0.380890 | 5_4:-52278528 | None:intergenic |
| GAGTTGGAATCACCATATAA+AGG | 0.394155 | 5_4:-52279572 | None:intergenic |
| TCCATACTTCTCCTATGAAC+AGG | 0.425422 | 5_4:+52278527 | Msa0857090:CDS |
| CTTCTCTAATGTATTTGAGT+TGG | 0.427053 | 5_4:-52279588 | None:intergenic |
| CACTATATCTTATGAAGCCT+TGG | 0.435812 | 5_4:+52278650 | Msa0857090:CDS |
| ATGAGCTGAAGCCTGTTCAT+AGG | 0.437523 | 5_4:-52278538 | None:intergenic |
| GAATCACCATATAAAGGCTC+TGG | 0.448083 | 5_4:-52279566 | None:intergenic |
| ATAAAACTTTGGAAAATGAC+AGG | 0.453003 | 5_4:+52278438 | None:intergenic |
| CACTAGCACACTTTCTCCTT+AGG | 0.465254 | 5_4:-52278491 | None:intergenic |
| AGGGCTTCTTGAACCACCCT+TGG | 0.469455 | 5_4:+52279633 | Msa0857090:CDS |
| TATCTATGCATTGCAACATC+AGG | 0.488764 | 5_4:+52278710 | Msa0857090:CDS |
| GTGGAGCATGCAAGTTCCTA+AGG | 0.513337 | 5_4:+52278475 | Msa0857090:CDS |
| CTCCATTATGCTTGAACCAA+GGG | 0.523653 | 5_4:-52279649 | None:intergenic |
| AGGATCTTGCATGCGAGCCA+AGG | 0.545581 | 5_4:-52278667 | None:intergenic |
| AGATATTCTTGGAAGTGTAA+TGG | 0.550072 | 5_4:+52279403 | Msa0857090:CDS |
| TCTCCATTATGCTTGAACCA+AGG | 0.563541 | 5_4:-52279650 | None:intergenic |
| TAATGGAGACATGAAGAACT+AGG | 0.571172 | 5_4:+52279664 | Msa0857090:CDS |
| ACAGGGTTTGGCTCATCATG+TGG | 0.589293 | 5_4:+52278456 | Msa0857090:CDS |
| GCAGGTTGCTAGCTTGCAAG+AGG | 0.599304 | 5_4:+52279376 | Msa0857090:intron |
| CATTATGCTTGAACCAAGGG+TGG | 0.607660 | 5_4:-52279646 | None:intergenic |
| AGTGTTAGTGTTGTGAATTG+TGG | 0.611640 | 5_4:+52279434 | Msa0857090:CDS |
| CTTATCAGGAATTGATCAAG+AGG | 0.617949 | 5_4:+52279613 | Msa0857090:CDS |
| TAAAACTTTGGAAAATGACA+GGG | 0.628064 | 5_4:+52278439 | None:intergenic |
| TTATCAGGAATTGATCAAGA+GGG | 0.643489 | 5_4:+52279614 | Msa0857090:CDS |
| GGCTTCATAAGATATAGTGA+TGG | 0.646623 | 5_4:-52278646 | None:intergenic |
| GAGCTAATTCCTAATGCACA+AGG | 0.651993 | 5_4:+52279539 | Msa0857090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAGTTTCATAAAATTA+CGG | - | chr5_4:52279022-52279041 | None:intergenic | 10.0% |
| !! | TTAATAGTTTCATAAAATTA+CGG | - | chr5_4:52279022-52279041 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | + | chr5_4:52279046-52279065 | Msa0857090:intron | 20.0% |
| !!! | AATTACCATAATCAAAGTTT+TGG | + | chr5_4:52279500-52279519 | Msa0857090:CDS | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | + | chr5_4:52279046-52279065 | Msa0857090:intron | 20.0% |
| !!! | AATTACCATAATCAAAGTTT+TGG | + | chr5_4:52279500-52279519 | Msa0857090:CDS | 20.0% |
| !!! | ACAACCATTGTTTTAAATTG+TGG | - | chr5_4:52278905-52278924 | None:intergenic | 25.0% |
| ! | TTTAAATTGTCGAACAATCA+TGG | + | chr5_4:52278943-52278962 | Msa0857090:intron | 25.0% |
| ! | ATAGTTTCATAAAATTACGG+TGG | - | chr5_4:52279019-52279038 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | - | chr5_4:52279103-52279122 | None:intergenic | 25.0% |
| !!! | GCTTGTTATAAATAAGAAGT+TGG | + | chr5_4:52279230-52279249 | Msa0857090:intron | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | - | chr5_4:52279508-52279527 | None:intergenic | 25.0% |
| !!! | ACAACCATTGTTTTAAATTG+TGG | - | chr5_4:52278905-52278924 | None:intergenic | 25.0% |
| ! | TTTAAATTGTCGAACAATCA+TGG | + | chr5_4:52278943-52278962 | Msa0857090:intron | 25.0% |
| ! | ATAGTTTCATAAAATTACGG+TGG | - | chr5_4:52279019-52279038 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | - | chr5_4:52279103-52279122 | None:intergenic | 25.0% |
| !!! | GCTTGTTATAAATAAGAAGT+TGG | + | chr5_4:52279230-52279249 | Msa0857090:intron | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | - | chr5_4:52279508-52279527 | None:intergenic | 25.0% |
| !! | GCATCACTTCTATTTTGAAT+AGG | - | chr5_4:52278624-52278643 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+CGG | + | chr5_4:52278794-52278813 | Msa0857090:intron | 30.0% | |
| ATTTAAAAACCTTGGTTGTG+AGG | - | chr5_4:52278930-52278949 | None:intergenic | 30.0% | |
| GTTCGACAATTTAAAAACCT+TGG | - | chr5_4:52278938-52278957 | None:intergenic | 30.0% | |
| AATGGATGCTAGAAATATAG+CGG | - | chr5_4:52279085-52279104 | None:intergenic | 30.0% | |
| ATTCAATGCATGTGTAAGTA+AGG | - | chr5_4:52279188-52279207 | None:intergenic | 30.0% | |
| CTCTCCACAAAAAATTTCTT+AGG | + | chr5_4:52279265-52279284 | Msa0857090:intron | 30.0% | |
| !!! | TAGGCCTAAGAAATTTTTTG+TGG | - | chr5_4:52279272-52279291 | None:intergenic | 30.0% |
| ! | GGCCTAAAAAATTTTCTACA+CGG | + | chr5_4:52279286-52279305 | Msa0857090:intron | 30.0% |
| TTTCTTATGTGTGATTATGC+AGG | + | chr5_4:52279358-52279377 | Msa0857090:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | + | chr5_4:52279403-52279422 | Msa0857090:CDS | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | - | chr5_4:52279476-52279495 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | + | chr5_4:52279511-52279530 | Msa0857090:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | + | chr5_4:52279517-52279536 | Msa0857090:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | - | chr5_4:52279591-52279610 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | + | chr5_4:52279599-52279618 | Msa0857090:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | + | chr5_4:52279614-52279633 | Msa0857090:CDS | 30.0% | |
| !! | GCATCACTTCTATTTTGAAT+AGG | - | chr5_4:52278624-52278643 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+CGG | + | chr5_4:52278794-52278813 | Msa0857090:intron | 30.0% | |
| ATTTAAAAACCTTGGTTGTG+AGG | - | chr5_4:52278930-52278949 | None:intergenic | 30.0% | |
| GTTCGACAATTTAAAAACCT+TGG | - | chr5_4:52278938-52278957 | None:intergenic | 30.0% | |
| AATGGATGCTAGAAATATAG+CGG | - | chr5_4:52279085-52279104 | None:intergenic | 30.0% | |
| ATTCAATGCATGTGTAAGTA+AGG | - | chr5_4:52279188-52279207 | None:intergenic | 30.0% | |
| CTCTCCACAAAAAATTTCTT+AGG | + | chr5_4:52279265-52279284 | Msa0857090:intron | 30.0% | |
| !!! | TAGGCCTAAGAAATTTTTTG+TGG | - | chr5_4:52279272-52279291 | None:intergenic | 30.0% |
| ! | GGCCTAAAAAATTTTCTACA+CGG | + | chr5_4:52279286-52279305 | Msa0857090:intron | 30.0% |
| TTTCTTATGTGTGATTATGC+AGG | + | chr5_4:52279358-52279377 | Msa0857090:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | + | chr5_4:52279403-52279422 | Msa0857090:CDS | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | - | chr5_4:52279476-52279495 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | + | chr5_4:52279511-52279530 | Msa0857090:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | + | chr5_4:52279517-52279536 | Msa0857090:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | - | chr5_4:52279591-52279610 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | + | chr5_4:52279599-52279618 | Msa0857090:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | + | chr5_4:52279614-52279633 | Msa0857090:CDS | 30.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | + | chr5_4:52278557-52278576 | Msa0857090:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | - | chr5_4:52278649-52278668 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | + | chr5_4:52278650-52278669 | Msa0857090:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | - | chr5_4:52278690-52278709 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | + | chr5_4:52278710-52278729 | Msa0857090:CDS | 35.0% | |
| CACCAAAATGCGGTAAAATA+TGG | + | chr5_4:52278804-52278823 | Msa0857090:intron | 35.0% | |
| ! | CGGACCACAATTTAAAACAA+TGG | + | chr5_4:52278898-52278917 | Msa0857090:intron | 35.0% |
| TCGAACAATCATGGATATTG+TGG | + | chr5_4:52278952-52278971 | Msa0857090:intron | 35.0% | |
| ATATGCAGATAATGTGACCT+TGG | + | chr5_4:52278977-52278996 | Msa0857090:intron | 35.0% | |
| AATGCATGTGTAAGTAAGGA+TGG | - | chr5_4:52279184-52279203 | None:intergenic | 35.0% | |
| !!! | GGCCGTGTAGAAAATTTTTT+AGG | - | chr5_4:52279291-52279310 | None:intergenic | 35.0% |
| CATGACCTACACATAATTGT+GGG | + | chr5_4:52279310-52279329 | Msa0857090:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | + | chr5_4:52279311-52279330 | Msa0857090:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | + | chr5_4:52279392-52279411 | Msa0857090:CDS | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | + | chr5_4:52279434-52279453 | Msa0857090:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | + | chr5_4:52279470-52279489 | Msa0857090:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | - | chr5_4:52279575-52279594 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | + | chr5_4:52279613-52279632 | Msa0857090:CDS | 35.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | + | chr5_4:52278557-52278576 | Msa0857090:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | - | chr5_4:52278649-52278668 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | + | chr5_4:52278650-52278669 | Msa0857090:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | - | chr5_4:52278690-52278709 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | + | chr5_4:52278710-52278729 | Msa0857090:CDS | 35.0% | |
| CACCAAAATGCGGTAAAATA+TGG | + | chr5_4:52278804-52278823 | Msa0857090:intron | 35.0% | |
| ! | CGGACCACAATTTAAAACAA+TGG | + | chr5_4:52278898-52278917 | Msa0857090:intron | 35.0% |
| TCGAACAATCATGGATATTG+TGG | + | chr5_4:52278952-52278971 | Msa0857090:intron | 35.0% | |
| ATATGCAGATAATGTGACCT+TGG | + | chr5_4:52278977-52278996 | Msa0857090:intron | 35.0% | |
| AATGCATGTGTAAGTAAGGA+TGG | - | chr5_4:52279184-52279203 | None:intergenic | 35.0% | |
| !!! | GGCCGTGTAGAAAATTTTTT+AGG | - | chr5_4:52279291-52279310 | None:intergenic | 35.0% |
| CATGACCTACACATAATTGT+GGG | + | chr5_4:52279310-52279329 | Msa0857090:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | + | chr5_4:52279311-52279330 | Msa0857090:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | + | chr5_4:52279392-52279411 | Msa0857090:CDS | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | + | chr5_4:52279434-52279453 | Msa0857090:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | + | chr5_4:52279470-52279489 | Msa0857090:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | - | chr5_4:52279575-52279594 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | + | chr5_4:52279613-52279632 | Msa0857090:CDS | 35.0% | |
| TCCATACTTCTCCTATGAAC+AGG | + | chr5_4:52278527-52278546 | Msa0857090:CDS | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | + | chr5_4:52278564-52278583 | Msa0857090:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | + | chr5_4:52278675-52278694 | Msa0857090:CDS | 40.0% | |
| ! | CGCCATATTTTACCGCATTT+TGG | - | chr5_4:52278809-52278828 | None:intergenic | 40.0% |
| TTGCGATTGTAATGTCGTTG+TGG | + | chr5_4:52278842-52278861 | Msa0857090:intron | 40.0% | |
| ! | ATGTGACCTTGGTGCATATT+TGG | + | chr5_4:52278988-52279007 | Msa0857090:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | - | chr5_4:52279162-52279181 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | - | chr5_4:52279170-52279189 | None:intergenic | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | - | chr5_4:52279312-52279331 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | + | chr5_4:52279309-52279328 | Msa0857090:intron | 40.0% | |
| TGACCTACACATAATTGTGG+GGG | + | chr5_4:52279312-52279331 | Msa0857090:intron | 40.0% | |
| ! | ACATAATTGTGGGGGTGTAA+TGG | + | chr5_4:52279320-52279339 | Msa0857090:intron | 40.0% |
| GAGCTAATTCCTAATGCACA+AGG | + | chr5_4:52279539-52279558 | Msa0857090:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | - | chr5_4:52279551-52279570 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | + | chr5_4:52279560-52279579 | Msa0857090:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | - | chr5_4:52279569-52279588 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | - | chr5_4:52279652-52279671 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | - | chr5_4:52279653-52279672 | None:intergenic | 40.0% | |
| TCCATACTTCTCCTATGAAC+AGG | + | chr5_4:52278527-52278546 | Msa0857090:CDS | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | + | chr5_4:52278564-52278583 | Msa0857090:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | + | chr5_4:52278675-52278694 | Msa0857090:CDS | 40.0% | |
| ! | CGCCATATTTTACCGCATTT+TGG | - | chr5_4:52278809-52278828 | None:intergenic | 40.0% |
| TTGCGATTGTAATGTCGTTG+TGG | + | chr5_4:52278842-52278861 | Msa0857090:intron | 40.0% | |
| ! | ATGTGACCTTGGTGCATATT+TGG | + | chr5_4:52278988-52279007 | Msa0857090:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | - | chr5_4:52279162-52279181 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | - | chr5_4:52279170-52279189 | None:intergenic | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | - | chr5_4:52279312-52279331 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | + | chr5_4:52279309-52279328 | Msa0857090:intron | 40.0% | |
| TGACCTACACATAATTGTGG+GGG | + | chr5_4:52279312-52279331 | Msa0857090:intron | 40.0% | |
| ! | ACATAATTGTGGGGGTGTAA+TGG | + | chr5_4:52279320-52279339 | Msa0857090:intron | 40.0% |
| GAGCTAATTCCTAATGCACA+AGG | + | chr5_4:52279539-52279558 | Msa0857090:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | - | chr5_4:52279551-52279570 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | + | chr5_4:52279560-52279579 | Msa0857090:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | - | chr5_4:52279569-52279588 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | - | chr5_4:52279652-52279671 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | - | chr5_4:52279653-52279672 | None:intergenic | 40.0% | |
| CACTAGCACACTTTCTCCTT+AGG | - | chr5_4:52278494-52278513 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | - | chr5_4:52278531-52278550 | None:intergenic | 45.0% | |
| ATGAGCTGAAGCCTGTTCAT+AGG | - | chr5_4:52278541-52278560 | None:intergenic | 45.0% | |
| GCTCATCCAAATATGCACCA+AGG | - | chr5_4:52278997-52279016 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | - | chr5_4:52279159-52279178 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | + | chr5_4:52279156-52279175 | Msa0857090:intron | 45.0% | |
| ACACCCCCACAATTATGTGT+AGG | - | chr5_4:52279318-52279337 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | - | chr5_4:52279649-52279668 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | + | chr5_4:52279647-52279666 | Msa0857090:CDS | 45.0% | |
| CACTAGCACACTTTCTCCTT+AGG | - | chr5_4:52278494-52278513 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | - | chr5_4:52278531-52278550 | None:intergenic | 45.0% | |
| ATGAGCTGAAGCCTGTTCAT+AGG | - | chr5_4:52278541-52278560 | None:intergenic | 45.0% | |
| GCTCATCCAAATATGCACCA+AGG | - | chr5_4:52278997-52279016 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | - | chr5_4:52279159-52279178 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | + | chr5_4:52279156-52279175 | Msa0857090:intron | 45.0% | |
| ACACCCCCACAATTATGTGT+AGG | - | chr5_4:52279318-52279337 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | - | chr5_4:52279649-52279668 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | + | chr5_4:52279647-52279666 | Msa0857090:CDS | 45.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | + | chr5_4:52278456-52278475 | Msa0857090:CDS | 50.0% |
| GTGGAGCATGCAAGTTCCTA+AGG | + | chr5_4:52278475-52278494 | Msa0857090:CDS | 50.0% | |
| GCGGTAAAATATGGCGCATG+CGG | + | chr5_4:52278813-52278832 | Msa0857090:intron | 50.0% | |
| TGTTGCCACAGTTGCAGTTG+CGG | + | chr5_4:52278878-52278897 | Msa0857090:intron | 50.0% | |
| TGGTTGTGACCTCACAACCA+AGG | + | chr5_4:52278918-52278937 | Msa0857090:intron | 50.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | + | chr5_4:52278456-52278475 | Msa0857090:CDS | 50.0% |
| GTGGAGCATGCAAGTTCCTA+AGG | + | chr5_4:52278475-52278494 | Msa0857090:CDS | 50.0% | |
| GCGGTAAAATATGGCGCATG+CGG | + | chr5_4:52278813-52278832 | Msa0857090:intron | 50.0% | |
| TGTTGCCACAGTTGCAGTTG+CGG | + | chr5_4:52278878-52278897 | Msa0857090:intron | 50.0% | |
| TGGTTGTGACCTCACAACCA+AGG | + | chr5_4:52278918-52278937 | Msa0857090:intron | 50.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | - | chr5_4:52278670-52278689 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | + | chr5_4:52279376-52279395 | Msa0857090:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | + | chr5_4:52279633-52279652 | Msa0857090:CDS | 55.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | - | chr5_4:52278670-52278689 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | + | chr5_4:52279376-52279395 | Msa0857090:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | + | chr5_4:52279633-52279652 | Msa0857090:CDS | 55.0% | |
| GTGGTCCGCAACTGCAACTG+TGG | - | chr5_4:52278886-52278905 | None:intergenic | 60.0% | |
| GTGGTCCGCAACTGCAACTG+TGG | - | chr5_4:52278886-52278905 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 52278453 | 52279685 | 52278453 | ID=Msa0857090;Name=Msa0857090 |
| chr5_4 | mRNA | 52278453 | 52279685 | 52278453 | ID=Msa0857090-mRNA-1;Parent=Msa0857090;Name=Msa0857090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|194 |
| chr5_4 | exon | 52278453 | 52278731 | 52278453 | ID=Msa0857090-mRNA-1:exon:16327;Parent=Msa0857090-mRNA-1 |
| chr5_4 | exon | 52279380 | 52279685 | 52279380 | ID=Msa0857090-mRNA-1:exon:16328;Parent=Msa0857090-mRNA-1 |
| chr5_4 | CDS | 52278453 | 52278731 | 52278453 | ID=Msa0857090-mRNA-1:cds;Parent=Msa0857090-mRNA-1 |
| chr5_4 | CDS | 52279380 | 52279685 | 52279380 | ID=Msa0857090-mRNA-1:cds;Parent=Msa0857090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
