AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0857320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857320 MtrunA17_Chr5g0424741 90.543 497 44 1 1 494 1 497 0.0 869
Msa0857320 MtrunA17_Chr5g0424931 47.885 520 176 9 1 493 8 459 7.37e-145 426
Msa0857320 MtrunA17_Chr5g0425261 55.156 417 134 8 1 415 1 366 9.98e-134 392
Msa0857320 MtrunA17_Chr5g0424801 54.893 419 136 8 1 417 1 368 1.54e-133 391
Msa0857320 MtrunA17_Chr1g0178011 50.120 415 153 8 1 411 1 365 9.76e-121 361
Msa0857320 MtrunA17_Chr5g0417281 42.369 498 208 13 5 490 4 434 1.78e-107 330
Msa0857320 MtrunA17_Chr5g0436761 39.715 491 210 15 5 486 5 418 1.83e-95 296
Msa0857320 MtrunA17_Chr2g0277461 40.206 485 182 18 1 472 1 390 1.83e-88 278
Msa0857320 MtrunA17_Chr2g0289221 46.910 356 137 12 1 347 9 321 5.23e-83 261
Msa0857320 MtrunA17_Chr5g0417211 47.753 356 135 12 1 347 1 314 4.47e-79 253
Msa0857320 MtrunA17_Chr2g0277531 42.776 353 143 14 6 347 14 318 1.14e-74 238
Msa0857320 MtrunA17_Chr3g0115271 33.895 534 232 17 4 489 8 468 1.27e-72 241
Msa0857320 MtrunA17_Chr5g0425661 55.405 222 66 7 11 228 36 228 2.20e-64 208
Msa0857320 MtrunA17_Chr2g0326761 31.910 445 218 12 9 404 8 416 3.54e-57 201
Msa0857320 MtrunA17_Chr1g0181211 30.392 510 239 17 9 468 24 467 2.13e-55 196
Msa0857320 MtrunA17_Chr4g0028971 32.511 446 209 14 1 392 1 408 4.43e-53 190
Msa0857320 MtrunA17_Chr1g0199681 31.337 501 240 20 9 466 91 530 2.77e-49 179
Msa0857320 MtrunA17_Chr7g0264171 29.310 522 240 19 9 472 28 478 9.27e-48 174
Msa0857320 MtrunA17_Chr4g0009751 30.250 400 232 12 10 401 17 377 1.44e-47 174
Msa0857320 MtrunA17_Chr2g0282961 31.099 373 220 10 3 367 44 387 2.22e-45 167
Msa0857320 MtrunA17_Chr7g0239061 28.675 415 242 13 1 400 3 378 7.55e-45 167
Msa0857320 MtrunA17_Chr2g0301251 27.254 488 304 12 5 481 16 463 1.21e-44 168
Msa0857320 MtrunA17_Chr5g0425651 64.815 108 38 0 261 368 2 109 3.54e-44 151
Msa0857320 MtrunA17_Chr4g0070181 27.510 498 291 14 5 482 16 463 4.70e-43 163
Msa0857320 MtrunA17_Chr2g0276781 29.147 422 245 11 12 423 23 400 1.06e-42 160
Msa0857320 MtrunA17_Chr1g0156321 31.298 393 219 14 9 383 40 399 1.59e-42 161
Msa0857320 MtrunA17_Chr4g0046371 29.104 402 245 14 12 400 38 412 7.93e-41 155
Msa0857320 MtrunA17_Chr2g0326281 30.026 383 214 12 12 367 56 411 3.38e-40 154
Msa0857320 MtrunA17_Chr8g0385791 30.256 390 210 14 12 382 59 405 7.22e-40 154
Msa0857320 MtrunA17_Chr8g0346711 28.297 364 219 9 12 367 29 358 5.25e-39 150
Msa0857320 MtrunA17_Chr8g0376771 28.283 396 238 11 5 387 16 378 5.55e-39 151
Msa0857320 MtrunA17_Chr3g0109391 27.960 397 243 11 9 393 23 388 1.06e-38 150
Msa0857320 MtrunA17_Chr2g0285461 26.904 394 247 8 5 387 16 379 1.50e-38 150
Msa0857320 MtrunA17_Chr4g0029671 30.245 367 221 11 12 367 54 396 1.57e-38 149
Msa0857320 MtrunA17_Chr5g0433301 28.293 410 242 10 9 410 21 386 1.60e-38 150
Msa0857320 MtrunA17_Chr8g0389081 28.883 367 224 8 9 367 29 366 3.98e-37 146
Msa0857320 MtrunA17_Chr7g0264161 31.548 336 184 12 22 347 2 301 3.60e-36 135
Msa0857320 MtrunA17_Chr5g0424791 45.614 171 60 3 63 233 14 151 6.41e-32 119
Msa0857320 MtrunA17_Chr5g0424781 64.789 71 25 0 403 473 6 76 2.96e-18 80.1
Msa0857320 MtrunA17_Chr8g0356211 25.541 231 150 9 147 367 2 220 2.68e-17 82.8
Msa0857320 MtrunA17_Chr5g0419861 35.507 138 59 4 50 185 12 121 2.13e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857320 AT1G77850.2 36.010 411 191 10 7 379 13 389 3.85e-70 234
Msa0857320 AT1G77850.1 36.010 411 191 10 7 379 13 389 4.79e-70 234
Msa0857320 AT4G30080.1 32.379 454 224 12 9 410 16 438 2.33e-56 199
Msa0857320 AT2G28350.1 31.891 439 224 14 9 401 7 416 1.03e-52 189
Msa0857320 AT2G28350.2 31.891 439 224 14 9 401 7 416 1.16e-52 189
Msa0857320 AT2G46530.1 31.135 379 217 8 11 380 20 363 7.01e-52 186
Msa0857320 AT2G46530.3 31.135 379 217 8 11 380 41 384 1.54e-51 185
Msa0857320 AT3G61830.1 30.273 403 231 14 11 401 24 388 1.69e-48 176
Msa0857320 AT4G23980.2 30.137 365 212 9 12 367 12 342 5.69e-48 176
Msa0857320 AT4G23980.1 30.137 365 212 9 12 367 12 342 6.98e-48 175
Msa0857320 AT2G33860.1 32.877 365 206 11 12 367 54 388 4.61e-47 172
Msa0857320 AT1G59750.4 30.607 428 238 13 12 422 22 407 4.94e-46 171
Msa0857320 AT1G59750.1 30.093 432 240 13 12 422 22 412 1.14e-44 167
Msa0857320 AT1G59750.3 30.093 432 240 13 12 422 22 412 1.14e-44 167
Msa0857320 AT1G59750.2 30.465 430 238 14 12 422 22 409 1.39e-44 166
Msa0857320 AT1G34390.1 29.201 363 211 9 12 367 27 350 1.25e-42 160
Msa0857320 AT5G20730.2 30.133 375 223 8 5 372 17 359 5.77e-42 160
Msa0857320 AT5G37020.1 28.362 409 239 11 9 408 19 382 5.33e-41 157
Msa0857320 AT5G37020.2 28.362 409 239 11 9 408 19 382 5.52e-41 157
Msa0857320 AT1G34310.1 29.223 373 206 12 9 367 24 352 5.58e-41 155
Msa0857320 AT1G19220.1 28.415 366 225 8 9 367 20 355 7.45e-41 157
Msa0857320 AT5G62000.4 29.843 382 222 11 12 382 61 407 1.39e-40 156
Msa0857320 AT5G62000.2 29.974 387 215 13 12 382 61 407 1.56e-40 156
Msa0857320 AT5G62000.5 29.974 387 215 13 12 382 61 407 1.56e-40 156
Msa0857320 AT5G62000.3 29.974 387 215 13 12 382 61 407 1.56e-40 156
Msa0857320 AT5G62000.1 29.974 387 215 13 12 382 61 407 1.56e-40 156
Msa0857320 AT5G20730.3 30.053 376 223 9 5 372 17 360 1.64e-40 156
Msa0857320 AT5G20730.1 30.053 376 223 9 5 372 17 360 1.91e-40 156
Msa0857320 AT1G19850.1 29.923 391 207 14 9 373 51 400 9.00e-40 154
Msa0857320 AT1G19850.2 29.923 391 207 14 9 373 40 389 9.19e-40 154
Msa0857320 AT5G60450.1 30.376 372 214 13 11 367 64 405 9.31e-40 154
Msa0857320 AT5G60450.2 30.376 372 214 13 11 367 40 381 9.35e-40 153
Msa0857320 AT1G30330.3 29.268 410 232 15 4 390 10 384 1.40e-39 153
Msa0857320 AT1G30330.2 29.268 410 232 15 4 390 10 384 1.40e-39 153
Msa0857320 AT1G30330.1 29.167 408 233 15 4 390 10 382 1.80e-39 153
Msa0857320 AT1G34410.1 27.838 370 209 11 12 367 27 352 1.98e-39 151
Msa0857320 AT1G35520.1 28.919 370 205 12 12 367 27 352 2.38e-39 150
Msa0857320 AT1G35240.1 28.108 370 208 12 12 367 27 352 3.76e-39 150
Msa0857320 AT1G35540.1 27.838 370 209 10 12 367 27 352 2.99e-37 145
Msa0857320 AT3G61830.2 29.745 353 201 12 58 401 23 337 1.73e-35 139
Msa0857320 AT1G34170.1 30.270 370 202 13 12 367 25 352 2.97e-34 135
Msa0857320 AT2G46530.2 32.000 250 158 5 137 380 33 276 3.98e-30 123
Msa0857320 AT1G34170.2 29.539 369 180 14 12 367 25 326 2.32e-29 120
Msa0857320 AT1G34170.3 29.539 369 180 14 12 367 25 326 4.27e-29 120
Msa0857320 AT2G33860.2 32.203 236 145 7 141 367 2 231 5.00e-29 119
Msa0857320 AT1G43950.1 32.900 231 114 9 12 236 27 222 6.57e-28 111
Msa0857320 AT5G37020.3 28.832 274 172 7 141 408 31 287 7.95e-25 108

Find 144 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGAATGGTTGGGAATT+TGG 0.146103 5_4:+52853919 Msa0857320:CDS
TGTTTCCATCGTTCTCTTCT+TGG 0.162944 5_4:-52853351 None:intergenic
GGCGCATATTTGCCATATTT+TGG 0.204114 5_4:-52853065 None:intergenic
TCTCTTTATCATAGGTTAAC+TGG 0.215844 5_4:+52854754 Msa0857320:intron
CCGCCTTCCTCTTCAGTTGT+AGG 0.235630 5_4:-52853757 None:intergenic
GCATGTTCCAAGTGGCCTTC+TGG 0.242565 5_4:-52853136 None:intergenic
CATCTTATCTGTTGATCTTC+TGG 0.246194 5_4:+52853225 Msa0857320:CDS
AAGGATCCCATTGTTGAATA+AGG 0.268591 5_4:-52855047 None:intergenic
AGGAGCTGTGTTTCAATGTT+AGG 0.289094 5_4:-52853169 None:intergenic
CCTCAGGAGGAGCTGGTTCT+TGG 0.290438 5_4:-52853390 None:intergenic
GGTAATAGAGGCGGTGGAAT+TGG 0.297777 5_4:-52854888 None:intergenic
GTTTCATCGGGAATAGTTCT+AGG 0.308963 5_4:+52855180 Msa0857320:CDS
AGTCAGGAGGAGCTGGTTCT+TGG 0.325690 5_4:-52853321 None:intergenic
TGCCAAGGATTGACGCGGTT+TGG 0.331418 5_4:-52854801 None:intergenic
GCTATCATCGTCTTCTTCAT+TGG 0.336046 5_4:-52853416 None:intergenic
TGTATTATCCGACGGCTAAT+TGG 0.337447 5_4:+52853857 Msa0857320:CDS
TTTGGATTCTGCGAGATATC+AGG 0.347838 5_4:-52854783 None:intergenic
TATCAGAATTCAACAATGTT+TGG 0.347991 5_4:-52855073 None:intergenic
CTATCATCGTCTTCTTCATT+GGG 0.349341 5_4:-52853415 None:intergenic
TCCTAGCTGGCGTATGCTTC+AGG 0.352282 5_4:+52854050 Msa0857320:CDS
CATGTTCCAAGTGGCCTTCT+GGG 0.356154 5_4:-52853135 None:intergenic
ACGAATCTGATGCAGATAAA+TGG 0.364449 5_4:-52855130 None:intergenic
AAGAAACTCAGGTTTACTTC+TGG 0.365878 5_4:+52853625 Msa0857320:CDS
CCGACATTCAAGACGTAGTC+TGG 0.367274 5_4:+52853578 Msa0857320:CDS
GGAATTGGAGGATAAGAATA+TGG 0.385197 5_4:-52854873 None:intergenic
CGCCTTCCTCTTCAGTTGTA+GGG 0.385926 5_4:-52853756 None:intergenic
GGAATCGGAGGATAAGAATA+TGG 0.386399 5_4:-52854966 None:intergenic
CCATCGTTCTCTTCTTGGTC+GGG 0.392490 5_4:-52853346 None:intergenic
CTTTCCCAATCTTGACTTGG+AGG 0.393297 5_4:+52853525 Msa0857320:CDS
AGGATCCCATTGTTGAATAA+GGG 0.394605 5_4:-52855046 None:intergenic
AATTCCGACAAATATCTTTC+CGG 0.399060 5_4:-52853716 None:intergenic
GATAAGAATATGGAATTTGT+AGG 0.399636 5_4:-52854956 None:intergenic
TCCATCGTTCTCTTCTTGGT+CGG 0.402482 5_4:-52853347 None:intergenic
CTGGCTCCCAGCATGCCGTC+TGG 0.405966 5_4:-52855101 None:intergenic
TGCAATAGAGGCGGTGGAAT+CGG 0.405972 5_4:-52854981 None:intergenic
ATTCAACAATGTTTGGTTCA+AGG 0.406117 5_4:-52855066 None:intergenic
CTGAAGAGGAAGGCGGGAAA+AGG 0.410319 5_4:+52853764 Msa0857320:CDS
GAGGAGCTGGTTCTTGGACT+TGG 0.420907 5_4:-52853315 None:intergenic
GAGGAGCTGGTTCTTGGACT+TGG 0.420907 5_4:-52853384 None:intergenic
ACCGTGTGGACTCCAAAATA+TGG 0.424433 5_4:+52853053 Msa0857320:CDS
GCTGTCAAGATTCCGAAGAT+TGG 0.424603 5_4:+52853094 Msa0857320:CDS
GGAGCTGTGTTTCAATGTTA+GGG 0.425269 5_4:-52853168 None:intergenic
CGCCAGCTAGGAACATTAGA+AGG 0.426148 5_4:-52854039 None:intergenic
TCTTCTTGGTCGGGAAAGTC+AGG 0.427116 5_4:-52853337 None:intergenic
TGGATCCTCCAAGTCAAGAT+TGG 0.427196 5_4:-52853530 None:intergenic
CGGAATCTTGACAGCAGGTC+CGG 0.431910 5_4:-52853086 None:intergenic
GAGTCCACACGGTGTGGCTC+AGG 0.436225 5_4:-52853043 None:intergenic
GACATAGAAGACTGCAATAG+AGG 0.437550 5_4:-52854993 None:intergenic
CTCTTTATCATAGGTTAACT+GGG 0.440069 5_4:+52854755 Msa0857320:intron
AGTTAAAGATGCTGTGGAAT+TGG 0.445090 5_4:+52853807 Msa0857320:CDS
GGGAATGGTAATAGAGGCGG+TGG 0.449146 5_4:-52854894 None:intergenic
ATCCAAACCGCGTCAATCCT+TGG 0.458623 5_4:+52854799 Msa0857320:CDS
GAATAAGGGAACTCTGTCAT+AGG 0.460002 5_4:-52855032 None:intergenic
TGAAGAGGAAGGCGGGAAAA+GGG 0.462455 5_4:+52853765 Msa0857320:CDS
TATAAGGGTGATGGTTTCAT+CGG 0.468979 5_4:+52855167 Msa0857320:CDS
TCTTCTTCATTGGGAACCTC+AGG 0.469717 5_4:-52853406 None:intergenic
CGGGAAAAGGGAGAATTTAA+CGG 0.473489 5_4:+52853777 Msa0857320:CDS
GAGTTCCCTTATTCAACAAT+GGG 0.473672 5_4:+52855041 Msa0857320:CDS
TTGGGAACCTCAGGAGGAGC+TGG 0.478723 5_4:-52853397 None:intergenic
TACCGGAGTGAGGAGCAGTT+TGG 0.478735 5_4:-52853275 None:intergenic
ATGTTAGAGATTGTCCCCTT+TGG 0.479248 5_4:-52854006 None:intergenic
ATAAGAATATGGAATTTGTA+GGG 0.480420 5_4:-52854955 None:intergenic
GTCCACTGTGAGTATCAGAT+TGG 0.492170 5_4:-52853471 None:intergenic
CTACTTCCCAGAAGGCCACT+TGG 0.494993 5_4:+52853129 Msa0857320:CDS
GGATCCTCCAAGTCAAGATT+GGG 0.497543 5_4:-52853529 None:intergenic
ATGGAGGACGAAGACATAGA+AGG 0.503648 5_4:-52853189 None:intergenic
AAGAATATGGCATTTGTAGT+GGG 0.505178 5_4:-52854860 None:intergenic
AATGGTTGGGAATTTGGAAT+GGG 0.505443 5_4:+52853925 Msa0857320:CDS
GAATGGTTGGGAATTTGGAA+TGG 0.509049 5_4:+52853924 Msa0857320:CDS
AACTCAGGTTTACTTCTGGT+TGG 0.509116 5_4:+52853629 Msa0857320:CDS
AAGACATATTATCAGCCAAA+GGG 0.511664 5_4:+52853991 Msa0857320:CDS
GATCTTTCCCAATCTTGACT+TGG 0.511867 5_4:+52853522 Msa0857320:CDS
ACACCACCATCAGTTGTTAC+CGG 0.515207 5_4:-52853292 None:intergenic
TTCCTTCTAATGTTCCTAGC+TGG 0.515821 5_4:+52854037 Msa0857320:CDS
AGATATTTGTCGGAATTCGC+AGG 0.516804 5_4:+52853722 Msa0857320:CDS
AAAGATGCTGTGGAATTGGC+TGG 0.518790 5_4:+52853811 Msa0857320:CDS
ATAAGGGTGATGGTTTCATC+GGG 0.525279 5_4:+52855168 Msa0857320:CDS
ATGAGGCTATGAAGAATGGT+TGG 0.527470 5_4:+52853911 Msa0857320:CDS
TAAGAATATGGCATTTGTAG+TGG 0.532926 5_4:-52854861 None:intergenic
TCGGGAAAGTCAGGAGGAGC+TGG 0.536223 5_4:-52853328 None:intergenic
CTCACTCCGGTAACAACTGA+TGG 0.536431 5_4:+52853286 Msa0857320:CDS
GAGAGCTTCTGAGACTGCAT+TGG 0.537366 5_4:-52853550 None:intergenic
ATCTTCGGAATCTTGACAGC+AGG 0.537862 5_4:-52853091 None:intergenic
AAACCGCGTCAATCCTTGGC+AGG 0.540194 5_4:+52854803 Msa0857320:CDS
AATAGAGGCGGTGGAATTGG+AGG 0.543731 5_4:-52854885 None:intergenic
GAAGACTGCAATAGAGGCGG+TGG 0.544397 5_4:-52854987 None:intergenic
GTTGATGAGGCTATGAAGAA+TGG 0.545415 5_4:+52853907 Msa0857320:CDS
AGAGTTCCCTTATTCAACAA+TGG 0.546940 5_4:+52855040 Msa0857320:CDS
TCCACTGTGAGTATCAGATT+GGG 0.550250 5_4:-52853470 None:intergenic
TCTGCCGGAAAGATATTTGT+CGG 0.551480 5_4:+52853712 Msa0857320:CDS
AAGGGAGAATTTAACGGAGA+TGG 0.554277 5_4:+52853783 Msa0857320:CDS
TGCAGATAAATGGTCATGGC+TGG 0.554287 5_4:-52855120 None:intergenic
GAACTCTGTCATAGGAATGA+AGG 0.555804 5_4:-52855024 None:intergenic
TGCCAAACTGCTCCTCACTC+CGG 0.557138 5_4:+52853273 Msa0857320:CDS
TCTTCATTGGGAACCTCAGG+AGG 0.561708 5_4:-52853403 None:intergenic
TGAGGCTATGAAGAATGGTT+GGG 0.565444 5_4:+52853912 Msa0857320:CDS
TTGGGTGAGAATCTTTACAT+AGG 0.574104 5_4:-52853452 None:intergenic
GAAGAACTCTGAGAATGTCT+AGG 0.575630 5_4:-52854930 None:intergenic
TCAAGTTGTGTATTATCCGA+CGG 0.584356 5_4:+52853849 Msa0857320:CDS
TTTCATCGGGAATAGTTCTA+GGG 0.584589 5_4:+52855181 Msa0857320:CDS
CTACAACTGAAGAGGAAGGC+GGG 0.584889 5_4:+52853758 Msa0857320:CDS
AAGATGATGCAAAGAACGGA+TGG 0.585879 5_4:-52853208 None:intergenic
CCAGACTACGTCTTGAATGT+CGG 0.587404 5_4:-52853578 None:intergenic
GAAGACATATTATCAGCCAA+AGG 0.587576 5_4:+52853990 Msa0857320:CDS
GGGTAAATATCAACCTGCCA+AGG 0.589960 5_4:-52854816 None:intergenic
AAAATATGGCAAATATGCGC+CGG 0.590046 5_4:+52853067 Msa0857320:CDS
AGATAAGATGATGCAAAGAA+CGG 0.590314 5_4:-52853212 None:intergenic
AGAATATGGCATTTGTAGTG+GGG 0.591762 5_4:-52854859 None:intergenic
CTGGTTGGTCACAATTTGTG+AGG 0.592410 5_4:+52853644 Msa0857320:CDS
GTGTGGCTCAGGCAGAGACA+TGG 0.605690 5_4:-52853032 None:intergenic
TAAGAATATGGAATTTGTAG+GGG 0.612098 5_4:-52854954 None:intergenic
CATCGGGAATAGTTCTAGGG+TGG 0.619996 5_4:+52855184 Msa0857320:CDS
TATGTACCCTACAACTGAAG+AGG 0.620410 5_4:+52853750 Msa0857320:CDS
AAGAATATGGAATTTGTAGG+GGG 0.621894 5_4:-52854953 None:intergenic
ACCTGAAGCATACGCCAGCT+AGG 0.625148 5_4:-52854051 None:intergenic
GAGCTGTGTTTCAATGTTAG+GGG 0.627335 5_4:-52853167 None:intergenic
AAAGTCTACTACTTCCCAGA+AGG 0.628017 5_4:+52853121 Msa0857320:CDS
GCTACCACGTGAAGAAACTC+AGG 0.629119 5_4:+52853614 Msa0857320:CDS
CATCAGTTGTTACCGGAGTG+AGG 0.630410 5_4:-52853285 None:intergenic
ATGATGCAAAGAACGGATGG+AGG 0.630857 5_4:-52853205 None:intergenic
TCTGCCTGAGCCACACCGTG+TGG 0.632229 5_4:+52853039 Msa0857320:CDS
GATGGCAGTTAAAGATGCTG+TGG 0.632301 5_4:+52853801 Msa0857320:CDS
GGAATTGGCTGGGAAGAACA+TGG 0.633030 5_4:+52853822 Msa0857320:CDS
ATTTGTCGGAATTCGCAGGA+AGG 0.633253 5_4:+52853726 Msa0857320:CDS
CCAAGAACCAGCTCCTCCTG+AGG 0.640922 5_4:+52853390 Msa0857320:CDS
AATAGAGGCGGTGGAATCGG+AGG 0.644011 5_4:-52854978 None:intergenic
AAGATGCTGTGGAATTGGCT+GGG 0.646479 5_4:+52853812 Msa0857320:CDS
GGATGCGAGTGTTGTTGATG+AGG 0.647140 5_4:+52853894 Msa0857320:CDS
CAACCTGCCAAGGATTGACG+CGG 0.647296 5_4:-52854806 None:intergenic
CTGATGCAGATAAATGGTCA+TGG 0.654222 5_4:-52855124 None:intergenic
GGAATAGTTCTAGGGTGGAG+TGG 0.655506 5_4:+52855189 Msa0857320:CDS
TCTTGGTCGGGAAAGTCAGG+AGG 0.656368 5_4:-52853334 None:intergenic
TACCCTACAACTGAAGAGGA+AGG 0.658978 5_4:+52853754 Msa0857320:CDS
AGAATATGGAATTTGTAGGG+GGG 0.659659 5_4:-52854952 None:intergenic
AGACATATTATCAGCCAAAG+GGG 0.661902 5_4:+52853992 Msa0857320:CDS
TAAACCTGAGTTTCTTCACG+TGG 0.666809 5_4:-52853618 None:intergenic
CCCGACCAAGAAGAGAACGA+TGG 0.669874 5_4:+52853346 Msa0857320:CDS
ACTCCGGTAACAACTGATGG+TGG 0.673968 5_4:+52853289 Msa0857320:CDS
AAATCACACCAATTAGCCGT+CGG 0.674239 5_4:-52853865 None:intergenic
ATGAACAAGCATGTTCCAAG+TGG 0.689657 5_4:-52853144 None:intergenic
ATCAATTCAATGCATTCACG+AGG 0.696770 5_4:-52853502 None:intergenic
ATAGAAGACTGCAATAGAGG+CGG 0.698613 5_4:-52854990 None:intergenic
CCTACAACTGAAGAGGAAGG+CGG 0.707887 5_4:+52853757 Msa0857320:CDS
ACCCAATCTGATACTCACAG+TGG 0.756201 5_4:+52853469 Msa0857320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAAAGTTTTGAATTATAA+GGG + chr5_4:52855152-52855171 Msa0857320:CDS 15.0%
!!! TCAAAAGTTTTGAATTATAA+GGG + chr5_4:52855152-52855171 Msa0857320:CDS 15.0%
!! ATATGCACTTGAAATATAAT+AGG - chr5_4:52854086-52854105 None:intergenic 20.0%
!! TTAAAATCTTAATGCTAAGT+AGG + chr5_4:52854622-52854641 Msa0857320:intron 20.0%
!! TATGATAAAGAGATGAAAAA+GGG - chr5_4:52854747-52854766 None:intergenic 20.0%
!! ATAAGAATATGGAATTTGTA+GGG - chr5_4:52854958-52854977 None:intergenic 20.0%
!!! GTCAAAAGTTTTGAATTATA+AGG + chr5_4:52855151-52855170 Msa0857320:CDS 20.0%
!! ATATGCACTTGAAATATAAT+AGG - chr5_4:52854086-52854105 None:intergenic 20.0%
!! TTAAAATCTTAATGCTAAGT+AGG + chr5_4:52854622-52854641 Msa0857320:intron 20.0%
!! TATGATAAAGAGATGAAAAA+GGG - chr5_4:52854747-52854766 None:intergenic 20.0%
!! ATAAGAATATGGAATTTGTA+GGG - chr5_4:52854958-52854977 None:intergenic 20.0%
!!! GTCAAAAGTTTTGAATTATA+AGG + chr5_4:52855151-52855170 Msa0857320:CDS 20.0%
! AAATCTATTCGAAATGAATC+AGG - chr5_4:52854148-52854167 None:intergenic 25.0%
!! AATCGATTCCAAAATGTAAT+CGG - chr5_4:52854480-52854499 None:intergenic 25.0%
! TTCTTAGAGAATATCACTAT+TGG - chr5_4:52854549-52854568 None:intergenic 25.0%
! ATAACATGCATACACATTTA+AGG - chr5_4:52854685-52854704 None:intergenic 25.0%
! CTATGATAAAGAGATGAAAA+AGG - chr5_4:52854748-52854767 None:intergenic 25.0%
!!! CTTTTTCATCTCTTTATCAT+AGG + chr5_4:52854746-52854765 Msa0857320:intron 25.0%
!! AATGTCTAGGAATTTTTGTT+GGG - chr5_4:52854920-52854939 None:intergenic 25.0%
! TAAGAATATGGAATTTGTAG+GGG - chr5_4:52854957-52854976 None:intergenic 25.0%
! GATAAGAATATGGAATTTGT+AGG - chr5_4:52854959-52854978 None:intergenic 25.0%
! TATCAGAATTCAACAATGTT+TGG - chr5_4:52855076-52855095 None:intergenic 25.0%
! AAATCTATTCGAAATGAATC+AGG - chr5_4:52854148-52854167 None:intergenic 25.0%
!! AATCGATTCCAAAATGTAAT+CGG - chr5_4:52854480-52854499 None:intergenic 25.0%
! TTCTTAGAGAATATCACTAT+TGG - chr5_4:52854549-52854568 None:intergenic 25.0%
! ATAACATGCATACACATTTA+AGG - chr5_4:52854685-52854704 None:intergenic 25.0%
! CTATGATAAAGAGATGAAAA+AGG - chr5_4:52854748-52854767 None:intergenic 25.0%
!!! CTTTTTCATCTCTTTATCAT+AGG + chr5_4:52854746-52854765 Msa0857320:intron 25.0%
!! AATGTCTAGGAATTTTTGTT+GGG - chr5_4:52854920-52854939 None:intergenic 25.0%
! TAAGAATATGGAATTTGTAG+GGG - chr5_4:52854957-52854976 None:intergenic 25.0%
! GATAAGAATATGGAATTTGT+AGG - chr5_4:52854959-52854978 None:intergenic 25.0%
! TATCAGAATTCAACAATGTT+TGG - chr5_4:52855076-52855095 None:intergenic 25.0%
AGATAAGATGATGCAAAGAA+CGG - chr5_4:52853215-52853234 None:intergenic 30.0%
! GTTTTCATAAAAAACTCTGC+CGG + chr5_4:52853697-52853716 Msa0857320:CDS 30.0%
AATTCCGACAAATATCTTTC+CGG - chr5_4:52853719-52853738 None:intergenic 30.0%
AAGACATATTATCAGCCAAA+GGG + chr5_4:52853991-52854010 Msa0857320:CDS 30.0%
TAGTAGTCTGAATGAATGAT+TGG + chr5_4:52854221-52854240 Msa0857320:intron 30.0%
TCCAAAATGTAATCGGATTA+GGG - chr5_4:52854473-52854492 None:intergenic 30.0%
TTCCAAAATGTAATCGGATT+AGG - chr5_4:52854474-52854493 None:intergenic 30.0%
AATGAGAAATAATGCTCAGA+AGG - chr5_4:52854592-52854611 None:intergenic 30.0%
TCTCTTTATCATAGGTTAAC+TGG + chr5_4:52854754-52854773 Msa0857320:intron 30.0%
CTCTTTATCATAGGTTAACT+GGG + chr5_4:52854755-52854774 Msa0857320:intron 30.0%
AAAAACTCTGAGCAAGTATA+GGG - chr5_4:52854839-52854858 None:intergenic 30.0%
AAGAATATGGCATTTGTAGT+GGG - chr5_4:52854863-52854882 None:intergenic 30.0%
TAAGAATATGGCATTTGTAG+TGG - chr5_4:52854864-52854883 None:intergenic 30.0%
! ATGTCTAGGAATTTTTGTTG+GGG - chr5_4:52854919-52854938 None:intergenic 30.0%
! GAATGTCTAGGAATTTTTGT+TGG - chr5_4:52854921-52854940 None:intergenic 30.0%
AAGAATATGGAATTTGTAGG+GGG - chr5_4:52854956-52854975 None:intergenic 30.0%
! ATTCAACAATGTTTGGTTCA+AGG - chr5_4:52855069-52855088 None:intergenic 30.0%
! AATTCTGATACTTTTCCAGA+CGG + chr5_4:52855086-52855105 Msa0857320:CDS 30.0%
!! GTTTTGAATTATAAGGGTGA+TGG + chr5_4:52855158-52855177 Msa0857320:CDS 30.0%
AGATAAGATGATGCAAAGAA+CGG - chr5_4:52853215-52853234 None:intergenic 30.0%
! GTTTTCATAAAAAACTCTGC+CGG + chr5_4:52853697-52853716 Msa0857320:CDS 30.0%
AATTCCGACAAATATCTTTC+CGG - chr5_4:52853719-52853738 None:intergenic 30.0%
AAGACATATTATCAGCCAAA+GGG + chr5_4:52853991-52854010 Msa0857320:CDS 30.0%
TAGTAGTCTGAATGAATGAT+TGG + chr5_4:52854221-52854240 Msa0857320:intron 30.0%
TCCAAAATGTAATCGGATTA+GGG - chr5_4:52854473-52854492 None:intergenic 30.0%
TTCCAAAATGTAATCGGATT+AGG - chr5_4:52854474-52854493 None:intergenic 30.0%
AATGAGAAATAATGCTCAGA+AGG - chr5_4:52854592-52854611 None:intergenic 30.0%
TCTCTTTATCATAGGTTAAC+TGG + chr5_4:52854754-52854773 Msa0857320:intron 30.0%
CTCTTTATCATAGGTTAACT+GGG + chr5_4:52854755-52854774 Msa0857320:intron 30.0%
AAAAACTCTGAGCAAGTATA+GGG - chr5_4:52854839-52854858 None:intergenic 30.0%
AAGAATATGGCATTTGTAGT+GGG - chr5_4:52854863-52854882 None:intergenic 30.0%
TAAGAATATGGCATTTGTAG+TGG - chr5_4:52854864-52854883 None:intergenic 30.0%
! ATGTCTAGGAATTTTTGTTG+GGG - chr5_4:52854919-52854938 None:intergenic 30.0%
! GAATGTCTAGGAATTTTTGT+TGG - chr5_4:52854921-52854940 None:intergenic 30.0%
AAGAATATGGAATTTGTAGG+GGG - chr5_4:52854956-52854975 None:intergenic 30.0%
! ATTCAACAATGTTTGGTTCA+AGG - chr5_4:52855069-52855088 None:intergenic 30.0%
! AATTCTGATACTTTTCCAGA+CGG + chr5_4:52855086-52855105 Msa0857320:CDS 30.0%
!! GTTTTGAATTATAAGGGTGA+TGG + chr5_4:52855158-52855177 Msa0857320:CDS 30.0%
AAAATATGGCAAATATGCGC+CGG + chr5_4:52853067-52853086 Msa0857320:CDS 35.0%
! TAGACTTTTGAGCCAATCTT+CGG - chr5_4:52853109-52853128 None:intergenic 35.0%
CATCTTATCTGTTGATCTTC+TGG + chr5_4:52853225-52853244 Msa0857320:CDS 35.0%
CAGTTTGGCAAAAACTTCAT+CGG - chr5_4:52853263-52853282 None:intergenic 35.0%
CTATCATCGTCTTCTTCATT+GGG - chr5_4:52853418-52853437 None:intergenic 35.0%
TTGGGTGAGAATCTTTACAT+AGG - chr5_4:52853455-52853474 None:intergenic 35.0%
ATCAATTCAATGCATTCACG+AGG - chr5_4:52853505-52853524 None:intergenic 35.0%
AAGAAACTCAGGTTTACTTC+TGG + chr5_4:52853625-52853644 Msa0857320:CDS 35.0%
AGTTAAAGATGCTGTGGAAT+TGG + chr5_4:52853807-52853826 Msa0857320:CDS 35.0%
! TCAAGTTGTGTATTATCCGA+CGG + chr5_4:52853849-52853868 Msa0857320:CDS 35.0%
! TAATTGGTGTGATTTTGTGG+TGG + chr5_4:52853873-52853892 Msa0857320:CDS 35.0%
ATGAAGAATGGTTGGGAATT+TGG + chr5_4:52853919-52853938 Msa0857320:CDS 35.0%
! AATGGTTGGGAATTTGGAAT+GGG + chr5_4:52853925-52853944 Msa0857320:CDS 35.0%
GAAGACATATTATCAGCCAA+AGG + chr5_4:52853990-52854009 Msa0857320:CDS 35.0%
AGACATATTATCAGCCAAAG+GGG + chr5_4:52853992-52854011 Msa0857320:CDS 35.0%
CGAATAGATTTGTGCACTAT+CGG + chr5_4:52854157-52854176 Msa0857320:intron 35.0%
! GTCTGAATGAATGATTGGTT+TGG + chr5_4:52854226-52854245 Msa0857320:intron 35.0%
!! ATGAATGATTGGTTTGGTCA+TGG + chr5_4:52854232-52854251 Msa0857320:intron 35.0%
!! TTGGTTTGGTCATGGATATT+TGG + chr5_4:52854240-52854259 Msa0857320:intron 35.0%
! TCCCTAATCCGATTACATTT+TGG + chr5_4:52854469-52854488 Msa0857320:intron 35.0%
CATAGAGTTGCATAAGAAAC+GGG - chr5_4:52854515-52854534 None:intergenic 35.0%
GCATAGAGTTGCATAAGAAA+CGG - chr5_4:52854516-52854535 None:intergenic 35.0%
GAAAAACTCTGAGCAAGTAT+AGG - chr5_4:52854840-52854859 None:intergenic 35.0%
AGAATATGGCATTTGTAGTG+GGG - chr5_4:52854862-52854881 None:intergenic 35.0%
GGAATTGGAGGATAAGAATA+TGG - chr5_4:52854876-52854895 None:intergenic 35.0%
! TGTCTAGGAATTTTTGTTGG+GGG - chr5_4:52854918-52854937 None:intergenic 35.0%
AGAATATGGAATTTGTAGGG+GGG - chr5_4:52854955-52854974 None:intergenic 35.0%
AGAGTTCCCTTATTCAACAA+TGG + chr5_4:52855040-52855059 Msa0857320:CDS 35.0%
GAGTTCCCTTATTCAACAAT+GGG + chr5_4:52855041-52855060 Msa0857320:CDS 35.0%
AGGATCCCATTGTTGAATAA+GGG - chr5_4:52855049-52855068 None:intergenic 35.0%
AAGGATCCCATTGTTGAATA+AGG - chr5_4:52855050-52855069 None:intergenic 35.0%
ACGAATCTGATGCAGATAAA+TGG - chr5_4:52855133-52855152 None:intergenic 35.0%
! TATAAGGGTGATGGTTTCAT+CGG + chr5_4:52855167-52855186 Msa0857320:CDS 35.0%
! TTTCATCGGGAATAGTTCTA+GGG + chr5_4:52855181-52855200 Msa0857320:CDS 35.0%
AAAATATGGCAAATATGCGC+CGG + chr5_4:52853067-52853086 Msa0857320:CDS 35.0%
! TAGACTTTTGAGCCAATCTT+CGG - chr5_4:52853109-52853128 None:intergenic 35.0%
CATCTTATCTGTTGATCTTC+TGG + chr5_4:52853225-52853244 Msa0857320:CDS 35.0%
CAGTTTGGCAAAAACTTCAT+CGG - chr5_4:52853263-52853282 None:intergenic 35.0%
CTATCATCGTCTTCTTCATT+GGG - chr5_4:52853418-52853437 None:intergenic 35.0%
TTGGGTGAGAATCTTTACAT+AGG - chr5_4:52853455-52853474 None:intergenic 35.0%
ATCAATTCAATGCATTCACG+AGG - chr5_4:52853505-52853524 None:intergenic 35.0%
AAGAAACTCAGGTTTACTTC+TGG + chr5_4:52853625-52853644 Msa0857320:CDS 35.0%
AGTTAAAGATGCTGTGGAAT+TGG + chr5_4:52853807-52853826 Msa0857320:CDS 35.0%
! TCAAGTTGTGTATTATCCGA+CGG + chr5_4:52853849-52853868 Msa0857320:CDS 35.0%
! TAATTGGTGTGATTTTGTGG+TGG + chr5_4:52853873-52853892 Msa0857320:CDS 35.0%
ATGAAGAATGGTTGGGAATT+TGG + chr5_4:52853919-52853938 Msa0857320:CDS 35.0%
! AATGGTTGGGAATTTGGAAT+GGG + chr5_4:52853925-52853944 Msa0857320:CDS 35.0%
GAAGACATATTATCAGCCAA+AGG + chr5_4:52853990-52854009 Msa0857320:CDS 35.0%
AGACATATTATCAGCCAAAG+GGG + chr5_4:52853992-52854011 Msa0857320:CDS 35.0%
CGAATAGATTTGTGCACTAT+CGG + chr5_4:52854157-52854176 Msa0857320:intron 35.0%
! GTCTGAATGAATGATTGGTT+TGG + chr5_4:52854226-52854245 Msa0857320:intron 35.0%
!! ATGAATGATTGGTTTGGTCA+TGG + chr5_4:52854232-52854251 Msa0857320:intron 35.0%
!! TTGGTTTGGTCATGGATATT+TGG + chr5_4:52854240-52854259 Msa0857320:intron 35.0%
! TCCCTAATCCGATTACATTT+TGG + chr5_4:52854469-52854488 Msa0857320:intron 35.0%
CATAGAGTTGCATAAGAAAC+GGG - chr5_4:52854515-52854534 None:intergenic 35.0%
GCATAGAGTTGCATAAGAAA+CGG - chr5_4:52854516-52854535 None:intergenic 35.0%
GAAAAACTCTGAGCAAGTAT+AGG - chr5_4:52854840-52854859 None:intergenic 35.0%
AGAATATGGCATTTGTAGTG+GGG - chr5_4:52854862-52854881 None:intergenic 35.0%
GGAATTGGAGGATAAGAATA+TGG - chr5_4:52854876-52854895 None:intergenic 35.0%
! TGTCTAGGAATTTTTGTTGG+GGG - chr5_4:52854918-52854937 None:intergenic 35.0%
AGAATATGGAATTTGTAGGG+GGG - chr5_4:52854955-52854974 None:intergenic 35.0%
AGAGTTCCCTTATTCAACAA+TGG + chr5_4:52855040-52855059 Msa0857320:CDS 35.0%
GAGTTCCCTTATTCAACAAT+GGG + chr5_4:52855041-52855060 Msa0857320:CDS 35.0%
AGGATCCCATTGTTGAATAA+GGG - chr5_4:52855049-52855068 None:intergenic 35.0%
AAGGATCCCATTGTTGAATA+AGG - chr5_4:52855050-52855069 None:intergenic 35.0%
ACGAATCTGATGCAGATAAA+TGG - chr5_4:52855133-52855152 None:intergenic 35.0%
! TATAAGGGTGATGGTTTCAT+CGG + chr5_4:52855167-52855186 Msa0857320:CDS 35.0%
! TTTCATCGGGAATAGTTCTA+GGG + chr5_4:52855181-52855200 Msa0857320:CDS 35.0%
! GGCGCATATTTGCCATATTT+TGG - chr5_4:52853068-52853087 None:intergenic 40.0%
AAAGTCTACTACTTCCCAGA+AGG + chr5_4:52853121-52853140 Msa0857320:CDS 40.0%
ATGAACAAGCATGTTCCAAG+TGG - chr5_4:52853147-52853166 None:intergenic 40.0%
GAGCTGTGTTTCAATGTTAG+GGG - chr5_4:52853170-52853189 None:intergenic 40.0%
GGAGCTGTGTTTCAATGTTA+GGG - chr5_4:52853171-52853190 None:intergenic 40.0%
AGGAGCTGTGTTTCAATGTT+AGG - chr5_4:52853172-52853191 None:intergenic 40.0%
AAGATGATGCAAAGAACGGA+TGG - chr5_4:52853211-52853230 None:intergenic 40.0%
TGTTTCCATCGTTCTCTTCT+TGG - chr5_4:52853354-52853373 None:intergenic 40.0%
GCTATCATCGTCTTCTTCAT+TGG - chr5_4:52853419-52853438 None:intergenic 40.0%
TCCACTGTGAGTATCAGATT+GGG - chr5_4:52853473-52853492 None:intergenic 40.0%
GATCTTTCCCAATCTTGACT+TGG + chr5_4:52853522-52853541 Msa0857320:CDS 40.0%
TAAACCTGAGTTTCTTCACG+TGG - chr5_4:52853621-52853640 None:intergenic 40.0%
AACTCAGGTTTACTTCTGGT+TGG + chr5_4:52853629-52853648 Msa0857320:CDS 40.0%
TCTGCCGGAAAGATATTTGT+CGG + chr5_4:52853712-52853731 Msa0857320:CDS 40.0%
AGATATTTGTCGGAATTCGC+AGG + chr5_4:52853722-52853741 Msa0857320:CDS 40.0%
TATGTACCCTACAACTGAAG+AGG + chr5_4:52853750-52853769 Msa0857320:CDS 40.0%
CGGGAAAAGGGAGAATTTAA+CGG + chr5_4:52853777-52853796 Msa0857320:CDS 40.0%
AAGGGAGAATTTAACGGAGA+TGG + chr5_4:52853783-52853802 Msa0857320:CDS 40.0%
TGTATTATCCGACGGCTAAT+TGG + chr5_4:52853857-52853876 Msa0857320:CDS 40.0%
AAATCACACCAATTAGCCGT+CGG - chr5_4:52853868-52853887 None:intergenic 40.0%
! GGCTAATTGGTGTGATTTTG+TGG + chr5_4:52853870-52853889 Msa0857320:CDS 40.0%
! GTTGATGAGGCTATGAAGAA+TGG + chr5_4:52853907-52853926 Msa0857320:CDS 40.0%
ATGAGGCTATGAAGAATGGT+TGG + chr5_4:52853911-52853930 Msa0857320:CDS 40.0%
TGAGGCTATGAAGAATGGTT+GGG + chr5_4:52853912-52853931 Msa0857320:CDS 40.0%
GAATGGTTGGGAATTTGGAA+TGG + chr5_4:52853924-52853943 Msa0857320:CDS 40.0%
ATGTTAGAGATTGTCCCCTT+TGG - chr5_4:52854009-52854028 None:intergenic 40.0%
TTCCTTCTAATGTTCCTAGC+TGG + chr5_4:52854037-52854056 Msa0857320:CDS 40.0%
! GCGTATGCTTCAGGTATTTT+TGG + chr5_4:52854059-52854078 Msa0857320:intron 40.0%
CAGGCATCAATGTATCAACT+AGG - chr5_4:52854129-52854148 None:intergenic 40.0%
TTCAGACTACTATGCATCAG+AGG - chr5_4:52854213-52854232 None:intergenic 40.0%
ACAGTGACTCAATCACAGAT+GGG - chr5_4:52854266-52854285 None:intergenic 40.0%
ATCTGTGATTGAGTCACTGT+CGG + chr5_4:52854266-52854285 Msa0857320:intron 40.0%
TTTGGATTCTGCGAGATATC+AGG - chr5_4:52854786-52854805 None:intergenic 40.0%
! GTCTAGGAATTTTTGTTGGG+GGG - chr5_4:52854917-52854936 None:intergenic 40.0%
! GAAGAACTCTGAGAATGTCT+AGG - chr5_4:52854933-52854952 None:intergenic 40.0%
GGAATCGGAGGATAAGAATA+TGG - chr5_4:52854969-52854988 None:intergenic 40.0%
ATAGAAGACTGCAATAGAGG+CGG - chr5_4:52854993-52855012 None:intergenic 40.0%
GACATAGAAGACTGCAATAG+AGG - chr5_4:52854996-52855015 None:intergenic 40.0%
GAACTCTGTCATAGGAATGA+AGG - chr5_4:52855027-52855046 None:intergenic 40.0%
GAATAAGGGAACTCTGTCAT+AGG - chr5_4:52855035-52855054 None:intergenic 40.0%
CTGATGCAGATAAATGGTCA+TGG - chr5_4:52855127-52855146 None:intergenic 40.0%
! ATAAGGGTGATGGTTTCATC+GGG + chr5_4:52855168-52855187 Msa0857320:CDS 40.0%
GTTTCATCGGGAATAGTTCT+AGG + chr5_4:52855180-52855199 Msa0857320:CDS 40.0%
! GGCGCATATTTGCCATATTT+TGG - chr5_4:52853068-52853087 None:intergenic 40.0%
AAAGTCTACTACTTCCCAGA+AGG + chr5_4:52853121-52853140 Msa0857320:CDS 40.0%
ATGAACAAGCATGTTCCAAG+TGG - chr5_4:52853147-52853166 None:intergenic 40.0%
GAGCTGTGTTTCAATGTTAG+GGG - chr5_4:52853170-52853189 None:intergenic 40.0%
GGAGCTGTGTTTCAATGTTA+GGG - chr5_4:52853171-52853190 None:intergenic 40.0%
AGGAGCTGTGTTTCAATGTT+AGG - chr5_4:52853172-52853191 None:intergenic 40.0%
AAGATGATGCAAAGAACGGA+TGG - chr5_4:52853211-52853230 None:intergenic 40.0%
TGTTTCCATCGTTCTCTTCT+TGG - chr5_4:52853354-52853373 None:intergenic 40.0%
GCTATCATCGTCTTCTTCAT+TGG - chr5_4:52853419-52853438 None:intergenic 40.0%
TCCACTGTGAGTATCAGATT+GGG - chr5_4:52853473-52853492 None:intergenic 40.0%
GATCTTTCCCAATCTTGACT+TGG + chr5_4:52853522-52853541 Msa0857320:CDS 40.0%
TAAACCTGAGTTTCTTCACG+TGG - chr5_4:52853621-52853640 None:intergenic 40.0%
AACTCAGGTTTACTTCTGGT+TGG + chr5_4:52853629-52853648 Msa0857320:CDS 40.0%
TCTGCCGGAAAGATATTTGT+CGG + chr5_4:52853712-52853731 Msa0857320:CDS 40.0%
AGATATTTGTCGGAATTCGC+AGG + chr5_4:52853722-52853741 Msa0857320:CDS 40.0%
TATGTACCCTACAACTGAAG+AGG + chr5_4:52853750-52853769 Msa0857320:CDS 40.0%
CGGGAAAAGGGAGAATTTAA+CGG + chr5_4:52853777-52853796 Msa0857320:CDS 40.0%
AAGGGAGAATTTAACGGAGA+TGG + chr5_4:52853783-52853802 Msa0857320:CDS 40.0%
TGTATTATCCGACGGCTAAT+TGG + chr5_4:52853857-52853876 Msa0857320:CDS 40.0%
AAATCACACCAATTAGCCGT+CGG - chr5_4:52853868-52853887 None:intergenic 40.0%
! GGCTAATTGGTGTGATTTTG+TGG + chr5_4:52853870-52853889 Msa0857320:CDS 40.0%
! GTTGATGAGGCTATGAAGAA+TGG + chr5_4:52853907-52853926 Msa0857320:CDS 40.0%
ATGAGGCTATGAAGAATGGT+TGG + chr5_4:52853911-52853930 Msa0857320:CDS 40.0%
TGAGGCTATGAAGAATGGTT+GGG + chr5_4:52853912-52853931 Msa0857320:CDS 40.0%
GAATGGTTGGGAATTTGGAA+TGG + chr5_4:52853924-52853943 Msa0857320:CDS 40.0%
ATGTTAGAGATTGTCCCCTT+TGG - chr5_4:52854009-52854028 None:intergenic 40.0%
TTCCTTCTAATGTTCCTAGC+TGG + chr5_4:52854037-52854056 Msa0857320:CDS 40.0%
! GCGTATGCTTCAGGTATTTT+TGG + chr5_4:52854059-52854078 Msa0857320:intron 40.0%
CAGGCATCAATGTATCAACT+AGG - chr5_4:52854129-52854148 None:intergenic 40.0%
TTCAGACTACTATGCATCAG+AGG - chr5_4:52854213-52854232 None:intergenic 40.0%
ACAGTGACTCAATCACAGAT+GGG - chr5_4:52854266-52854285 None:intergenic 40.0%
ATCTGTGATTGAGTCACTGT+CGG + chr5_4:52854266-52854285 Msa0857320:intron 40.0%
TTTGGATTCTGCGAGATATC+AGG - chr5_4:52854786-52854805 None:intergenic 40.0%
! GTCTAGGAATTTTTGTTGGG+GGG - chr5_4:52854917-52854936 None:intergenic 40.0%
! GAAGAACTCTGAGAATGTCT+AGG - chr5_4:52854933-52854952 None:intergenic 40.0%
GGAATCGGAGGATAAGAATA+TGG - chr5_4:52854969-52854988 None:intergenic 40.0%
ATAGAAGACTGCAATAGAGG+CGG - chr5_4:52854993-52855012 None:intergenic 40.0%
GACATAGAAGACTGCAATAG+AGG - chr5_4:52854996-52855015 None:intergenic 40.0%
GAACTCTGTCATAGGAATGA+AGG - chr5_4:52855027-52855046 None:intergenic 40.0%
GAATAAGGGAACTCTGTCAT+AGG - chr5_4:52855035-52855054 None:intergenic 40.0%
CTGATGCAGATAAATGGTCA+TGG - chr5_4:52855127-52855146 None:intergenic 40.0%
! ATAAGGGTGATGGTTTCATC+GGG + chr5_4:52855168-52855187 Msa0857320:CDS 40.0%
GTTTCATCGGGAATAGTTCT+AGG + chr5_4:52855180-52855199 Msa0857320:CDS 40.0%
ACCGTGTGGACTCCAAAATA+TGG + chr5_4:52853053-52853072 Msa0857320:CDS 45.0%
!!! GCCATATTTTGGAGTCCACA+CGG - chr5_4:52853057-52853076 None:intergenic 45.0%
ATCTTCGGAATCTTGACAGC+AGG - chr5_4:52853094-52853113 None:intergenic 45.0%
GCTGTCAAGATTCCGAAGAT+TGG + chr5_4:52853094-52853113 Msa0857320:CDS 45.0%
ATGGAGGACGAAGACATAGA+AGG - chr5_4:52853192-52853211 None:intergenic 45.0%
ATGATGCAAAGAACGGATGG+AGG - chr5_4:52853208-52853227 None:intergenic 45.0%
GCAAAAACTTCATCGGTGTG+AGG - chr5_4:52853256-52853275 None:intergenic 45.0%
ACACCACCATCAGTTGTTAC+CGG - chr5_4:52853295-52853314 None:intergenic 45.0%
TCCATCGTTCTCTTCTTGGT+CGG - chr5_4:52853350-52853369 None:intergenic 45.0%
TCTTCTTCATTGGGAACCTC+AGG - chr5_4:52853409-52853428 None:intergenic 45.0%
ACCCAATCTGATACTCACAG+TGG + chr5_4:52853469-52853488 Msa0857320:CDS 45.0%
GTCCACTGTGAGTATCAGAT+TGG - chr5_4:52853474-52853493 None:intergenic 45.0%
!! CTTTCCCAATCTTGACTTGG+AGG + chr5_4:52853525-52853544 Msa0857320:CDS 45.0%
GGATCCTCCAAGTCAAGATT+GGG - chr5_4:52853532-52853551 None:intergenic 45.0%
TGGATCCTCCAAGTCAAGAT+TGG - chr5_4:52853533-52853552 None:intergenic 45.0%
CCAGACTACGTCTTGAATGT+CGG - chr5_4:52853581-52853600 None:intergenic 45.0%
! CTGGTTGGTCACAATTTGTG+AGG + chr5_4:52853644-52853663 Msa0857320:CDS 45.0%
ATTTGTCGGAATTCGCAGGA+AGG + chr5_4:52853726-52853745 Msa0857320:CDS 45.0%
TACCCTACAACTGAAGAGGA+AGG + chr5_4:52853754-52853773 Msa0857320:CDS 45.0%
GATGGCAGTTAAAGATGCTG+TGG + chr5_4:52853801-52853820 Msa0857320:CDS 45.0%
AAAGATGCTGTGGAATTGGC+TGG + chr5_4:52853811-52853830 Msa0857320:CDS 45.0%
AAGATGCTGTGGAATTGGCT+GGG + chr5_4:52853812-52853831 Msa0857320:CDS 45.0%
GACAGTGACTCAATCACAGA+TGG - chr5_4:52854267-52854286 None:intergenic 45.0%
!! TCGCTATGAGTGGTTTTGCT+TGG + chr5_4:52854293-52854312 Msa0857320:intron 45.0%
TCGACTGCAAACAGTTAGTC+TGG + chr5_4:52854384-52854403 Msa0857320:intron 45.0%
GGGTAAATATCAACCTGCCA+AGG - chr5_4:52854819-52854838 None:intergenic 45.0%
! GGAATTTTTGTTGGGGGGAA+TGG - chr5_4:52854912-52854931 None:intergenic 45.0%
TGCAGATAAATGGTCATGGC+TGG - chr5_4:52855123-52855142 None:intergenic 45.0%
ACCGTGTGGACTCCAAAATA+TGG + chr5_4:52853053-52853072 Msa0857320:CDS 45.0%
!!! GCCATATTTTGGAGTCCACA+CGG - chr5_4:52853057-52853076 None:intergenic 45.0%
ATCTTCGGAATCTTGACAGC+AGG - chr5_4:52853094-52853113 None:intergenic 45.0%
GCTGTCAAGATTCCGAAGAT+TGG + chr5_4:52853094-52853113 Msa0857320:CDS 45.0%
ATGGAGGACGAAGACATAGA+AGG - chr5_4:52853192-52853211 None:intergenic 45.0%
ATGATGCAAAGAACGGATGG+AGG - chr5_4:52853208-52853227 None:intergenic 45.0%
GCAAAAACTTCATCGGTGTG+AGG - chr5_4:52853256-52853275 None:intergenic 45.0%
ACACCACCATCAGTTGTTAC+CGG - chr5_4:52853295-52853314 None:intergenic 45.0%
TCCATCGTTCTCTTCTTGGT+CGG - chr5_4:52853350-52853369 None:intergenic 45.0%
TCTTCTTCATTGGGAACCTC+AGG - chr5_4:52853409-52853428 None:intergenic 45.0%
ACCCAATCTGATACTCACAG+TGG + chr5_4:52853469-52853488 Msa0857320:CDS 45.0%
GTCCACTGTGAGTATCAGAT+TGG - chr5_4:52853474-52853493 None:intergenic 45.0%
!! CTTTCCCAATCTTGACTTGG+AGG + chr5_4:52853525-52853544 Msa0857320:CDS 45.0%
GGATCCTCCAAGTCAAGATT+GGG - chr5_4:52853532-52853551 None:intergenic 45.0%
TGGATCCTCCAAGTCAAGAT+TGG - chr5_4:52853533-52853552 None:intergenic 45.0%
CCAGACTACGTCTTGAATGT+CGG - chr5_4:52853581-52853600 None:intergenic 45.0%
! CTGGTTGGTCACAATTTGTG+AGG + chr5_4:52853644-52853663 Msa0857320:CDS 45.0%
ATTTGTCGGAATTCGCAGGA+AGG + chr5_4:52853726-52853745 Msa0857320:CDS 45.0%
TACCCTACAACTGAAGAGGA+AGG + chr5_4:52853754-52853773 Msa0857320:CDS 45.0%
GATGGCAGTTAAAGATGCTG+TGG + chr5_4:52853801-52853820 Msa0857320:CDS 45.0%
AAAGATGCTGTGGAATTGGC+TGG + chr5_4:52853811-52853830 Msa0857320:CDS 45.0%
AAGATGCTGTGGAATTGGCT+GGG + chr5_4:52853812-52853831 Msa0857320:CDS 45.0%
GACAGTGACTCAATCACAGA+TGG - chr5_4:52854267-52854286 None:intergenic 45.0%
!! TCGCTATGAGTGGTTTTGCT+TGG + chr5_4:52854293-52854312 Msa0857320:intron 45.0%
TCGACTGCAAACAGTTAGTC+TGG + chr5_4:52854384-52854403 Msa0857320:intron 45.0%
GGGTAAATATCAACCTGCCA+AGG - chr5_4:52854819-52854838 None:intergenic 45.0%
! GGAATTTTTGTTGGGGGGAA+TGG - chr5_4:52854912-52854931 None:intergenic 45.0%
TGCAGATAAATGGTCATGGC+TGG - chr5_4:52855123-52855142 None:intergenic 45.0%
!!! ATATTGATAAATATAATTTT+TGG + chr5_4:52854102-52854121 Msa0857320:intron 5.0%
!!! ATATTGATAAATATAATTTT+TGG + chr5_4:52854102-52854121 Msa0857320:intron 5.0%
!!! ATTTTGGAGTCCACACGGTG+TGG - chr5_4:52853052-52853071 None:intergenic 50.0%
CATGTTCCAAGTGGCCTTCT+GGG - chr5_4:52853138-52853157 None:intergenic 50.0%
CATCAGTTGTTACCGGAGTG+AGG - chr5_4:52853288-52853307 None:intergenic 50.0%
CTCACTCCGGTAACAACTGA+TGG + chr5_4:52853286-52853305 Msa0857320:CDS 50.0%
ACTCCGGTAACAACTGATGG+TGG + chr5_4:52853289-52853308 Msa0857320:CDS 50.0%
TCTTCTTGGTCGGGAAAGTC+AGG - chr5_4:52853340-52853359 None:intergenic 50.0%
CCATCGTTCTCTTCTTGGTC+GGG - chr5_4:52853349-52853368 None:intergenic 50.0%
TCTTCATTGGGAACCTCAGG+AGG - chr5_4:52853406-52853425 None:intergenic 50.0%
!! GAGAGCTTCTGAGACTGCAT+TGG - chr5_4:52853553-52853572 None:intergenic 50.0%
CCGACATTCAAGACGTAGTC+TGG + chr5_4:52853578-52853597 Msa0857320:CDS 50.0%
GCTACCACGTGAAGAAACTC+AGG + chr5_4:52853614-52853633 Msa0857320:CDS 50.0%
CGCCTTCCTCTTCAGTTGTA+GGG - chr5_4:52853759-52853778 None:intergenic 50.0%
CCTACAACTGAAGAGGAAGG+CGG + chr5_4:52853757-52853776 Msa0857320:CDS 50.0%
CTACAACTGAAGAGGAAGGC+GGG + chr5_4:52853758-52853777 Msa0857320:CDS 50.0%
TGAAGAGGAAGGCGGGAAAA+GGG + chr5_4:52853765-52853784 Msa0857320:CDS 50.0%
GGAATTGGCTGGGAAGAACA+TGG + chr5_4:52853822-52853841 Msa0857320:CDS 50.0%
! GGATGCGAGTGTTGTTGATG+AGG + chr5_4:52853894-52853913 Msa0857320:CDS 50.0%
CGCCAGCTAGGAACATTAGA+AGG - chr5_4:52854042-52854061 None:intergenic 50.0%
GCAAAACCACTCATAGCGAC+AGG - chr5_4:52854292-52854311 None:intergenic 50.0%
CTGTTTGCAGTCGAGAAGTC+TGG - chr5_4:52854378-52854397 None:intergenic 50.0%
ATCCAAACCGCGTCAATCCT+TGG + chr5_4:52854799-52854818 Msa0857320:CDS 50.0%
AATAGAGGCGGTGGAATTGG+AGG - chr5_4:52854888-52854907 None:intergenic 50.0%
GGTAATAGAGGCGGTGGAAT+TGG - chr5_4:52854891-52854910 None:intergenic 50.0%
GTTGGGGGGAATGGTAATAG+AGG - chr5_4:52854903-52854922 None:intergenic 50.0%
TGCAATAGAGGCGGTGGAAT+CGG - chr5_4:52854984-52855003 None:intergenic 50.0%
! TACTTTTCCAGACGGCATGC+TGG + chr5_4:52855094-52855113 Msa0857320:CDS 50.0%
! ACTTTTCCAGACGGCATGCT+GGG + chr5_4:52855095-52855114 Msa0857320:CDS 50.0%
!! CATCGGGAATAGTTCTAGGG+TGG + chr5_4:52855184-52855203 Msa0857320:CDS 50.0%
!! GGAATAGTTCTAGGGTGGAG+TGG + chr5_4:52855189-52855208 Msa0857320:CDS 50.0%
!!! ATTTTGGAGTCCACACGGTG+TGG - chr5_4:52853052-52853071 None:intergenic 50.0%
CATGTTCCAAGTGGCCTTCT+GGG - chr5_4:52853138-52853157 None:intergenic 50.0%
CATCAGTTGTTACCGGAGTG+AGG - chr5_4:52853288-52853307 None:intergenic 50.0%
CTCACTCCGGTAACAACTGA+TGG + chr5_4:52853286-52853305 Msa0857320:CDS 50.0%
ACTCCGGTAACAACTGATGG+TGG + chr5_4:52853289-52853308 Msa0857320:CDS 50.0%
TCTTCTTGGTCGGGAAAGTC+AGG - chr5_4:52853340-52853359 None:intergenic 50.0%
CCATCGTTCTCTTCTTGGTC+GGG - chr5_4:52853349-52853368 None:intergenic 50.0%
TCTTCATTGGGAACCTCAGG+AGG - chr5_4:52853406-52853425 None:intergenic 50.0%
!! GAGAGCTTCTGAGACTGCAT+TGG - chr5_4:52853553-52853572 None:intergenic 50.0%
CCGACATTCAAGACGTAGTC+TGG + chr5_4:52853578-52853597 Msa0857320:CDS 50.0%
GCTACCACGTGAAGAAACTC+AGG + chr5_4:52853614-52853633 Msa0857320:CDS 50.0%
CGCCTTCCTCTTCAGTTGTA+GGG - chr5_4:52853759-52853778 None:intergenic 50.0%
CCTACAACTGAAGAGGAAGG+CGG + chr5_4:52853757-52853776 Msa0857320:CDS 50.0%
CTACAACTGAAGAGGAAGGC+GGG + chr5_4:52853758-52853777 Msa0857320:CDS 50.0%
TGAAGAGGAAGGCGGGAAAA+GGG + chr5_4:52853765-52853784 Msa0857320:CDS 50.0%
GGAATTGGCTGGGAAGAACA+TGG + chr5_4:52853822-52853841 Msa0857320:CDS 50.0%
! GGATGCGAGTGTTGTTGATG+AGG + chr5_4:52853894-52853913 Msa0857320:CDS 50.0%
CGCCAGCTAGGAACATTAGA+AGG - chr5_4:52854042-52854061 None:intergenic 50.0%
GCAAAACCACTCATAGCGAC+AGG - chr5_4:52854292-52854311 None:intergenic 50.0%
CTGTTTGCAGTCGAGAAGTC+TGG - chr5_4:52854378-52854397 None:intergenic 50.0%
ATCCAAACCGCGTCAATCCT+TGG + chr5_4:52854799-52854818 Msa0857320:CDS 50.0%
AATAGAGGCGGTGGAATTGG+AGG - chr5_4:52854888-52854907 None:intergenic 50.0%
GGTAATAGAGGCGGTGGAAT+TGG - chr5_4:52854891-52854910 None:intergenic 50.0%
GTTGGGGGGAATGGTAATAG+AGG - chr5_4:52854903-52854922 None:intergenic 50.0%
TGCAATAGAGGCGGTGGAAT+CGG - chr5_4:52854984-52855003 None:intergenic 50.0%
! TACTTTTCCAGACGGCATGC+TGG + chr5_4:52855094-52855113 Msa0857320:CDS 50.0%
! ACTTTTCCAGACGGCATGCT+GGG + chr5_4:52855095-52855114 Msa0857320:CDS 50.0%
!! CATCGGGAATAGTTCTAGGG+TGG + chr5_4:52855184-52855203 Msa0857320:CDS 50.0%
!! GGAATAGTTCTAGGGTGGAG+TGG + chr5_4:52855189-52855208 Msa0857320:CDS 50.0%
CGGAATCTTGACAGCAGGTC+CGG - chr5_4:52853089-52853108 None:intergenic 55.0%
CTACTTCCCAGAAGGCCACT+TGG + chr5_4:52853129-52853148 Msa0857320:CDS 55.0%
GCATGTTCCAAGTGGCCTTC+TGG - chr5_4:52853139-52853158 None:intergenic 55.0%
TGCCAAACTGCTCCTCACTC+CGG + chr5_4:52853273-52853292 Msa0857320:CDS 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - chr5_4:52853278-52853297 None:intergenic 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:52853318-52853337 None:intergenic 55.0%
! AGTCAGGAGGAGCTGGTTCT+TGG - chr5_4:52853324-52853343 None:intergenic 55.0%
TCTTGGTCGGGAAAGTCAGG+AGG - chr5_4:52853337-52853356 None:intergenic 55.0%
CCCGACCAAGAAGAGAACGA+TGG + chr5_4:52853346-52853365 Msa0857320:CDS 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:52853318-52853337 None:intergenic 55.0%
CCGCCTTCCTCTTCAGTTGT+AGG - chr5_4:52853760-52853779 None:intergenic 55.0%
CTGAAGAGGAAGGCGGGAAA+AGG + chr5_4:52853764-52853783 Msa0857320:CDS 55.0%
TCCTAGCTGGCGTATGCTTC+AGG + chr5_4:52854050-52854069 Msa0857320:CDS 55.0%
ACCTGAAGCATACGCCAGCT+AGG - chr5_4:52854054-52854073 None:intergenic 55.0%
TGCCAAGGATTGACGCGGTT+TGG - chr5_4:52854804-52854823 None:intergenic 55.0%
AAACCGCGTCAATCCTTGGC+AGG + chr5_4:52854803-52854822 Msa0857320:CDS 55.0%
CAACCTGCCAAGGATTGACG+CGG - chr5_4:52854809-52854828 None:intergenic 55.0%
GGGAATGGTAATAGAGGCGG+TGG - chr5_4:52854897-52854916 None:intergenic 55.0%
GGGGGGAATGGTAATAGAGG+CGG - chr5_4:52854900-52854919 None:intergenic 55.0%
AATAGAGGCGGTGGAATCGG+AGG - chr5_4:52854981-52855000 None:intergenic 55.0%
GAAGACTGCAATAGAGGCGG+TGG - chr5_4:52854990-52855009 None:intergenic 55.0%
CGGAATCTTGACAGCAGGTC+CGG - chr5_4:52853089-52853108 None:intergenic 55.0%
CTACTTCCCAGAAGGCCACT+TGG + chr5_4:52853129-52853148 Msa0857320:CDS 55.0%
GCATGTTCCAAGTGGCCTTC+TGG - chr5_4:52853139-52853158 None:intergenic 55.0%
TGCCAAACTGCTCCTCACTC+CGG + chr5_4:52853273-52853292 Msa0857320:CDS 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - chr5_4:52853278-52853297 None:intergenic 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:52853318-52853337 None:intergenic 55.0%
! AGTCAGGAGGAGCTGGTTCT+TGG - chr5_4:52853324-52853343 None:intergenic 55.0%
TCTTGGTCGGGAAAGTCAGG+AGG - chr5_4:52853337-52853356 None:intergenic 55.0%
CCCGACCAAGAAGAGAACGA+TGG + chr5_4:52853346-52853365 Msa0857320:CDS 55.0%
! GAGGAGCTGGTTCTTGGACT+TGG - chr5_4:52853318-52853337 None:intergenic 55.0%
CCGCCTTCCTCTTCAGTTGT+AGG - chr5_4:52853760-52853779 None:intergenic 55.0%
CTGAAGAGGAAGGCGGGAAA+AGG + chr5_4:52853764-52853783 Msa0857320:CDS 55.0%
TCCTAGCTGGCGTATGCTTC+AGG + chr5_4:52854050-52854069 Msa0857320:CDS 55.0%
ACCTGAAGCATACGCCAGCT+AGG - chr5_4:52854054-52854073 None:intergenic 55.0%
TGCCAAGGATTGACGCGGTT+TGG - chr5_4:52854804-52854823 None:intergenic 55.0%
AAACCGCGTCAATCCTTGGC+AGG + chr5_4:52854803-52854822 Msa0857320:CDS 55.0%
CAACCTGCCAAGGATTGACG+CGG - chr5_4:52854809-52854828 None:intergenic 55.0%
GGGAATGGTAATAGAGGCGG+TGG - chr5_4:52854897-52854916 None:intergenic 55.0%
GGGGGGAATGGTAATAGAGG+CGG - chr5_4:52854900-52854919 None:intergenic 55.0%
AATAGAGGCGGTGGAATCGG+AGG - chr5_4:52854981-52855000 None:intergenic 55.0%
GAAGACTGCAATAGAGGCGG+TGG - chr5_4:52854990-52855009 None:intergenic 55.0%
TCGGGAAAGTCAGGAGGAGC+TGG - chr5_4:52853331-52853350 None:intergenic 60.0%
! CCTCAGGAGGAGCTGGTTCT+TGG - chr5_4:52853393-52853412 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+AGG + chr5_4:52853321-52853340 Msa0857320:CDS 60.0%
TTGGGAACCTCAGGAGGAGC+TGG - chr5_4:52853400-52853419 None:intergenic 60.0%
TGTCGGCCTGTCGCTATGAG+TGG + chr5_4:52854283-52854302 Msa0857320:intron 60.0%
TCGGGAAAGTCAGGAGGAGC+TGG - chr5_4:52853331-52853350 None:intergenic 60.0%
! CCTCAGGAGGAGCTGGTTCT+TGG - chr5_4:52853393-52853412 None:intergenic 60.0%
CCAAGAACCAGCTCCTCCTG+AGG + chr5_4:52853321-52853340 Msa0857320:CDS 60.0%
TTGGGAACCTCAGGAGGAGC+TGG - chr5_4:52853400-52853419 None:intergenic 60.0%
TGTCGGCCTGTCGCTATGAG+TGG + chr5_4:52854283-52854302 Msa0857320:intron 60.0%
TCTGCCTGAGCCACACCGTG+TGG + chr5_4:52853039-52853058 Msa0857320:CDS 65.0%
GAGTCCACACGGTGTGGCTC+AGG - chr5_4:52853046-52853065 None:intergenic 65.0%
TCTGCCTGAGCCACACCGTG+TGG + chr5_4:52853039-52853058 Msa0857320:CDS 65.0%
GAGTCCACACGGTGTGGCTC+AGG - chr5_4:52853046-52853065 None:intergenic 65.0%
CTGGCTCCCAGCATGCCGTC+TGG - chr5_4:52855104-52855123 None:intergenic 70.0%
CTGGCTCCCAGCATGCCGTC+TGG - chr5_4:52855104-52855123 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 52853034 52855223 52853034 ID=Msa0857320;Name=Msa0857320
chr5_4 mRNA 52853034 52855223 52853034 ID=Msa0857320-mRNA-1;Parent=Msa0857320;Name=Msa0857320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|497
chr5_4 exon 52853034 52854071 52853034 ID=Msa0857320-mRNA-1:exon:16481;Parent=Msa0857320-mRNA-1
chr5_4 exon 52854768 52855223 52854768 ID=Msa0857320-mRNA-1:exon:16482;Parent=Msa0857320-mRNA-1
chr5_4 CDS 52853034 52854071 52853034 ID=Msa0857320-mRNA-1:cds;Parent=Msa0857320-mRNA-1
chr5_4 CDS 52854768 52855223 52854768 ID=Msa0857320-mRNA-1:cds;Parent=Msa0857320-mRNA-1
Gene Sequence

>Msa0857320

ATGTCTCTGCCTGAGCCACACCGTGTGGACTCCAAAATATGGCAAATATGCGCCGGACCTGCTGTCAAGATTCCGAAGATTGGCTCAAAAGTCTACTACTTCCCAGAAGGCCACTTGGAACATGCTTGTTCATCCCCTAACATTGAAACACAGCTCCTTCTATGTCTTCGTCCTCCATCCGTTCTTTGCATCATCTTATCTGTTGATCTTCTGGCAAATCCTCACACCGATGAAGTTTTTGCCAAACTGCTCCTCACTCCGGTAACAACTGATGGTGGTGTCCAAGTCCAAGAACCAGCTCCTCCTGACTTTCCCGACCAAGAAGAGAACGATGGAAACAATCTTGTTGTCCAAGTCCAAGAACCAGCTCCTCCTGAGGTTCCCAATGAAGAAGACGATGATAGCAACAATGTTGTTTCCTATGTAAAGATTCTCACCCAATCTGATACTCACAGTGGACTTTTTGTACCTCGTGAATGCATTGAATTGATCTTTCCCAATCTTGACTTGGAGGATCCAATGCAGTCTCAGAAGCTCTCAGTCACCGACATTCAAGACGTAGTCTGGACGTACAAATATAGCTACCACGTGAAGAAACTCAGGTTTACTTCTGGTTGGTCACAATTTGTGAGGAAGAAGAAACTTGCTGCTCTTGATTATGTTGTTTTCATAAAAAACTCTGCCGGAAAGATATTTGTCGGAATTCGCAGGAAGGCTATGTACCCTACAACTGAAGAGGAAGGCGGGAAAAGGGAGAATTTAACGGAGATGGCAGTTAAAGATGCTGTGGAATTGGCTGGGAAGAACATGGCATTTCAAGTTGTGTATTATCCGACGGCTAATTGGTGTGATTTTGTGGTGGATGCGAGTGTTGTTGATGAGGCTATGAAGAATGGTTGGGAATTTGGAATGGGAATCAAGCTTCGTTTGAATGAAGATGCATCTTCAAATTCAAAGAAGACATATTATCAGCCAAAGGGGACAATCTCTAACATGTCTAACGTTCCTTCTAATGTTCCTAGCTGGCGTATGCTTCAGGTTAACTGGGATGATCCTGATATCTCGCAGAATCCAAACCGCGTCAATCCTTGGCAGGTTGATATTTACCCTATACTTGCTCAGAGTTTTTCCCCACTACAAATGCCATATTCTTATCCTCCAATTCCACCGCCTCTATTACCATTCCCCCCAACAAAAATTCCTAGACATTCTCAGAGTTCTTCCCCCCTACAAATTCCATATTCTTATCCTCCGATTCCACCGCCTCTATTGCAGTCTTCTATGTCTACTTCGTCCTTCATTCCTATGACAGAGTTCCCTTATTCAACAATGGGATCCTTGAACCAAACATTGTTGAATTCTGATACTTTTCCAGACGGCATGCTGGGAGCCAGCCATGACCATTTATCTGCATCAGATTCGTCAAAAGTTTTGAATTATAAGGGTGATGGTTTCATCGGGAATAGTTCTAGGGTGGAGTGGTACTTTGTGTGA
Protein sequence

>Msa0857320

MSLPEPHRVDSKIWQICAGPAVKIPKIGSKVYYFPEGHLEHACSSPNIETQLLLCLRPPSVLCIILSVDLLANPHTDEVFAKLLLTPVTTDGGVQVQEPAPPDFPDQEENDGNNLVVQVQEPAPPEVPNEEDDDSNNVVSYVKILTQSDTHSGLFVPRECIELIFPNLDLEDPMQSQKLSVTDIQDVVWTYKYSYHVKKLRFTSGWSQFVRKKKLAALDYVVFIKNSAGKIFVGIRRKAMYPTTEEEGGKRENLTEMAVKDAVELAGKNMAFQVVYYPTANWCDFVVDASVVDEAMKNGWEFGMGIKLRLNEDASSNSKKTYYQPKGTISNMSNVPSNVPSWRMLQVNWDDPDISQNPNRVNPWQVDIYPILAQSFSPLQMPYSYPPIPPPLLPFPPTKIPRHSQSSSPLQIPYSYPPIPPPLLQSSMSTSSFIPMTEFPYSTMGSLNQTLLNSDTFPDGMLGASHDHLSASDSSKVLNYKGDGFIGNSSRVEWYFV*