AlfalfaGEDB | Msa0858310

M. sativa cultivar zhongmu-4 / Msa0858310

KEGG: -
GO: -
PFAM: PF12799.10

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858310	XP_003616604.2	80.842	950	103	9	1	891	78	1007	0.0	1431

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858310	sp\|C0LGP4\|Y3475_ARATH	39.457	958	483	12	3	888	68	1000	0.0	623
Msa0858310	sp\|C0LGP4\|Y3475_ARATH	30.864	162	110	2	2	163	434	593	1.38e-13	79.0

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858310	G7KGY0	80.842	950	103	9	1	891	78	1007	0.0	1431

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858310	MtrunA17_Chr5g0436841	80.842	950	103	9	1	891	121	1050	0.0	1431
Msa0858310	MtrunA17_Chr1g0159871	63.953	946	276	11	1	891	1	936	0.0	1093
Msa0858310	MtrunA17_Chr7g0248261	62.860	937	272	8	6	891	49	960	0.0	1086
Msa0858310	MtrunA17_Chr7g0248261	29.571	443	248	8	1	387	140	574	5.37e-33	137
Msa0858310	MtrunA17_Chr7g0248261	34.906	212	133	4	3	212	390	598	5.95e-23	105
Msa0858310	MtrunA17_Chr5g0436861	62.793	938	301	8	1	891	73	1009	0.0	1079
Msa0858310	MtrunA17_Chr2g0314021	62.220	937	306	8	1	891	75	1009	0.0	1071
Msa0858310	MtrunA17_Chr2g0314001	61.376	945	301	9	1	891	75	1009	0.0	1071
Msa0858310	MtrunA17_Chr2g0314031	61.004	936	310	8	1	891	71	996	0.0	1033
Msa0858310	MtrunA17_Chr5g0437331	63.579	950	265	9	1	890	77	1005	0.0	1013

Showing 1 to 10 of 1,421 entries

Previous1 2 3 4 5…143Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858310	AT3G47570.1	39.457	958	483	12	3	888	68	1000	0.0	623
Msa0858310	AT3G47570.1	30.864	162	110	2	2	163	434	593	1.40e-14	79.0
Msa0858310	AT3G47090.1	38.254	928	513	8	16	890	81	1001	0.0	563
Msa0858310	AT3G47090.1	31.602	231	155	2	6	236	367	594	7.50e-22	102
Msa0858310	AT3G47090.1	31.183	186	102	3	3	188	436	595	1.87e-15	81.6
Msa0858310	AT3G47580.1	37.979	940	501	12	16	890	81	1003	0.0	556
Msa0858310	AT5G20480.1	37.447	948	512	12	3	890	75	1001	0.0	552
Msa0858310	AT5G20480.2	37.447	948	512	12	3	890	75	1001	0.0	552
Msa0858310	AT3G47110.1	38.373	959	479	12	13	890	93	1020	0.0	550
Msa0858310	AT3G47110.1	37.234	188	116	2	3	190	403	588	8.40e-22	102

Showing 1 to 10 of 1,021 entries

Previous1 2 3 4 5…103Next

Find 198 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGATTCATATTTGA+TGG	0.358635	5_4:-55595704	None:intergenic
AAAATTCCCGGTCATTTGGT+TGG	0.538123	5_4:-55595756	None:intergenic
AAACAAGCACCGAGGTCATT+TGG	0.330024	5_4:-55596922	None:intergenic
AAACATTTCCTAGGGAGGAT+GGG	0.567506	5_4:-55595487	None:intergenic
AAAGCAGAATGTGAAGCTCT+AGG	0.538380	5_4:+55598518	Msa0858310:CDS
AAAGCTGTAAACATCTCCCT+GGG	0.529662	5_4:-55599154	None:intergenic
AAAGGAATCGGACAACTTAT+CGG	0.379444	5_4:+55596091	Msa0858310:CDS
AAATATCAAGGTAATTAATC+TGG	0.285755	5_4:+55595367	Msa0858310:CDS
AACAAGCACCGAGGTCATTT+GGG	0.383848	5_4:-55596921	None:intergenic
AACAAGTTGGTCGTTTGAAG+CGG	0.557244	5_4:+55595273	Msa0858310:CDS

Showing 1 to 10 of 198 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATGTTAGATTTCCCAATGA+TGG	-	chr5_4:55595203-55595222	None:intergenic	30.0%
TTTCTGTAAGTGATAACCAT+TGG	-	chr5_4:55595520-55595539	None:intergenic	30.0%
ATCACTTACAGAAAATCACT+TGG	+	chr5_4:55595526-55595545	Msa0858310:CDS	30.0%
ACCAAGAAATCTACAAGATT+GGG	-	chr5_4:55595731-55595750	None:intergenic	30.0%
TACCAAGAAATCTACAAGAT+TGG	-	chr5_4:55595732-55595751	None:intergenic	30.0%
AATCTTGTAGATTTCTTGGT+AGG	+	chr5_4:55595731-55595750	Msa0858310:CDS	30.0%
TTTAATCTACCCAAAGTAAG+AGG	-	chr5_4:55595854-55595873	None:intergenic	30.0%
GAAAAGTTTCCTAGAAAATG+TGG	-	chr5_4:55596016-55596035	None:intergenic	30.0%
CATATCAAGCCAATTAAGAT+AGG	-	chr5_4:55596041-55596060	None:intergenic	30.0%
ATGGGGATGAATCAAATATA+TGG	+	chr5_4:55596058-55596077	Msa0858310:CDS	30.0%

Showing 1 to 10 of 364 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	55595146	55599514	55595146	ID=Msa0858310;Name=Msa0858310
chr5_4	mRNA	55595146	55599514	55595146	ID=Msa0858310-mRNA-1;Parent=Msa0858310;Name=Msa0858310-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.2\|0.16\|0.83\|1\|1\|6\|32\|891
chr5_4	exon	55595146	55596367	55595146	ID=Msa0858310-mRNA-1:exon:17050;Parent=Msa0858310-mRNA-1
chr5_4	exon	55596458	55596564	55596458	ID=Msa0858310-mRNA-1:exon:17051;Parent=Msa0858310-mRNA-1
chr5_4	exon	55596877	55597239	55596877	ID=Msa0858310-mRNA-1:exon:17052;Parent=Msa0858310-mRNA-1
chr5_4	exon	55598227	55598326	55598227	ID=Msa0858310-mRNA-1:exon:17053;Parent=Msa0858310-mRNA-1
chr5_4	exon	55598417	55598944	55598417	ID=Msa0858310-mRNA-1:exon:17054;Parent=Msa0858310-mRNA-1
chr5_4	exon	55599127	55599514	55599127	ID=Msa0858310-mRNA-1:exon:17055;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55595146	55596367	55595146	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55596458	55596564	55596458	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55596877	55597239	55596877	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55598227	55598326	55598227	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55598417	55598944	55598417	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	CDS	55599127	55599482	55599127	ID=Msa0858310-mRNA-1:cds;Parent=Msa0858310-mRNA-1
chr5_4	three_prime_UTR	55599483	55599514	55599483	ID=Msa0858310-mRNA-1:three_prime_utr;Parent=Msa0858310-mRNA-1

Gene Sequence

>Msa0858310

ATGATAGTCGCTTCTTTGCATTTTGAGAATCAAACATTGGGTGGTATTCTCGGACCATCATTGGGAAATCTAACATTTCTAAGAAAACTCTACCTTTCAAACGTCGACTTGCATGGTGAAATTCCAAAACAAGTTGGTCGTTTGAAGCGGCTGCAAGTTCTTCACTTAACAAACAACAACAAATTTCAAGGAGAGATTCCTATGGAGCTCACTAATTGCAAAAATATCAAGGTAATTAATCTGGGCTACAATCAACTCATTGGAAGAATTCCGACAAGGTTTGGGTCAATGATGCATCTTATTGAATTGAAACTCCGTGGCAATAATCTAGTTGGTACTATCCCATCCTCCCTAGGAAATGTTTCATCACTCCAATGGTTATCACTTACAGAAAATCACTTGGAAGGAAGCATACCTGATTCTTTGGGTAAGTTGTCAAGTTTGAATTTATTGTATCTAGGTGGAAATAATTTGTCATGTGAAATTCCTCATTCACTTTACAACCTATCAAATATGAAATCTTTTGATCTTGGGGTAAACAACTTATTCGGTAGTCTTCCATCAAATATGAATCTTGTTTTTCCCAATCTTGTAGATTTCTTGGTAGGAGCCAACCAAATGACCGGGAATTTTCCGTCTTCAATATTCAACCTCACAGAATTGCGATGGTTTGATTTAGGAGATAATTTTTTTAATGGGCCAATACCTCTTACTTTGGGTAGATTAAATAAACTTGAATTTTTTCAAATTGCCAAAAATAATTTTGGGAGTGGAAAGACTCATGATTTGGACTTTCTTTTCCTGCTAACCAACTGCACTAAATTGACAGAGCTCCTTCTTCATGAAAATGGATTTGGTGGGGAATTGCCACATTTTCTAGGAAACTTTTCAACCTATCTTAATTGGCTTGATATGGGGATGAATCAAATATATGGAGCCATACCTAAAGGAATCGGACAACTTATCGGTTTAACATACTTAGACATAGGATACAATTTCCTTGAGGGAACAATTCCAAATTCAATTGGAAAGTTAAATAATCTAGTAAAATTTCACTTGGGAGAAAACAAATTATATGGTAATATTCCTAATAGTATTGGAAATCTTACTATGTTGTCTGAACTAAATTTGTATAGAAATAAATTTCAAGGAAGCATTCCATTCACCCTTAGATATTGTACCAACTTGCAGTCATTTCGTATTTATGATAACAAGTTGAGTGACTTTGTTTGGGAGTTTGGAGGGGAGGGGAGGGGAGAGGAGGGTTTTGGAAAAAAGGAAGGAGCAAGTGGAAGAAATAGAAGACATTGGGAGGAGAGGGCTTTGGAGCTTTCTAGTTTGTATCTAAATGAAAACAAGTTGTCTAGTGAAATCCCAAATGACCTCGGTGCTTGTTTTACATTAACAAAGCTTGTGTTGAAGAACAACTTTTTCCATGGAGTTATACCTTCATTCTTGGGTTCTTTAAGATCTCTAGAAATATTAGACATGTCTAATAACAGTCTCTCAAGCACAATACCCTTTGAACTAGAAAATCTCACACTTTTAAATACTTTGAACCTGTCTTTTAACCATATTTATGGTGATGTTCCTGTAGAAGGCATCTTTAGCAATGTTTCGGCAATTTCATTAACCGGAAACAAAAACCTTTGTGGAGGAATACCTAAATTGAAATTTCCTCCATGTTCTAAGAGTATCAGTGGTTTGGTGGTGCAAAAAGAATTTCTCAGGGTGTGCAAAGTGCAAAAAATTAAGATTATAGGTGCAAATTTTAAAAGTTCAGGGTGTGCAGGAAGCTTTGGTTCTGTTTACAAAGGATCTCTACTCAACTTTGAAAAACCCATTGTTGTAAAGGTATTGAATCTTAAAACACGTGGAGGAGCAAAGAGTTTCAAAGCAGAATGTGAAGCTCTAGGAAAGATGAAGCACCGAAATCTTGTCAAGATCCTAACTTGTTGTTCAAGTGTTGATTATAAGGGTGAAGAGTTCAAGGATATTGTTTTTGAGTTCATGCCTAAGGGGAGTCTAGAAAAGCTTCTGCACGATAATGAAGGGTCTGGAATTCATAATCTCAGCCTCAGACACAGGGTTGACATTGCTCTTGATGTAGCTCATGCACTTGATTATCTTCACAATGGTACAGAGCAAGCCATAGTTCACTGTGATATTAAGCCGAGCAACGTTCTTCTGGACAATGACACTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCTTGGAACCAGAGACCATTCAAGTAAAGATCAAGTTAATTCTTCCACAATTAAGGGAACTATAGGATATGTTCCTCCCGAATATGGAGCAGGTGTTCCAGTATCGCCCCAGGGAGATGTTTACAGCTTTGGGATTCTTCTGTTAGAGATGCTCACTGGAAAGAGACCAACAGATAGCATGTTTTGCGAGAATCTTAACCTTCACAAATTCTGTAAGATGAAAATTCCCGTAGAAATTCTTGAGATAGTGGATTCACATTTGCTCATGTCATTTCCTAAAGATCAGACGCGAATGATGGAAAACAACATTAAGAAGTGTCTAGTGATGTTTGCTAAAATAGGAATTGCATGTTCTGAAGAATTTCCTACTCATCGAATGCTGACAAAAGATGTTACAGTGAAGTTGCTGGAAATTAAGCAGAAGTTGCTCTGCTAG

Protein sequence

>Msa0858310

MIVASLHFENQTLGGILGPSLGNLTFLRKLYLSNVDLHGEIPKQVGRLKRLQVLHLTNNNKFQGEIPMELTNCKNIKVINLGYNQLIGRIPTRFGSMMHLIELKLRGNNLVGTIPSSLGNVSSLQWLSLTENHLEGSIPDSLGKLSSLNLLYLGGNNLSCEIPHSLYNLSNMKSFDLGVNNLFGSLPSNMNLVFPNLVDFLVGANQMTGNFPSSIFNLTELRWFDLGDNFFNGPIPLTLGRLNKLEFFQIAKNNFGSGKTHDLDFLFLLTNCTKLTELLLHENGFGGELPHFLGNFSTYLNWLDMGMNQIYGAIPKGIGQLIGLTYLDIGYNFLEGTIPNSIGKLNNLVKFHLGENKLYGNIPNSIGNLTMLSELNLYRNKFQGSIPFTLRYCTNLQSFRIYDNKLSDFVWEFGGEGRGEEGFGKKEGASGRNRRHWEERALELSSLYLNENKLSSEIPNDLGACFTLTKLVLKNNFFHGVIPSFLGSLRSLEILDMSNNSLSSTIPFELENLTLLNTLNLSFNHIYGDVPVEGIFSNVSAISLTGNKNLCGGIPKLKFPPCSKSISGLVVQKEFLRVCKVQKIKIIGANFKSSGCAGSFGSVYKGSLLNFEKPIVVKVLNLKTRGGAKSFKAECEALGKMKHRNLVKILTCCSSVDYKGEEFKDIVFEFMPKGSLEKLLHDNEGSGIHNLSLRHRVDIALDVAHALDYLHNGTEQAIVHCDIKPSNVLLDNDTVAHLGDFGLARLILGTRDHSSKDQVNSSTIKGTIGYVPPEYGAGVPVSPQGDVYSFGILLLEMLTGKRPTDSMFCENLNLHKFCKMKIPVEILEIVDSHLLMSFPKDQTRMMENNIKKCLVMFAKIGIACSEEFPTHRMLTKDVTVKLLEIKQKLLC*