Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861230 | AES92029.1 | 80.311 | 193 | 17 | 2 | 29 | 200 | 31 | 223 | 3.36e-107 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861230 | G7JQ00 | 80.311 | 193 | 17 | 2 | 29 | 200 | 31 | 223 | 1.60e-107 | 317 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0861230 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0861230 | MtrunA17_Chr5g0393501 | 32.308 | 195 | 108 | 4 | 29 | 199 | 45 | 239 | 8.37e-28 | 105 |
| Msa0861230 | MtrunA17_Chr4g0044671 | 27.222 | 180 | 110 | 2 | 29 | 187 | 28 | 207 | 4.26e-14 | 68.2 |
| Msa0861230 | MtrunA17_Chr4g0034781 | 26.667 | 180 | 111 | 2 | 29 | 187 | 22 | 201 | 1.53e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGCGATTTCCAATT+TGG | 0.147900 | 5_4:+60486711 | Msa0861230:CDS |
| GGGTAAGGGGTTTGCGATTT+GGG | 0.160938 | 5_4:+60486669 | Msa0861230:CDS |
| TCTCCTCCTCTTCCCCAAAT+TGG | 0.218227 | 5_4:-60486725 | None:intergenic |
| TGGGTAAGGGGTTTGCGATT+TGG | 0.259010 | 5_4:+60486668 | Msa0861230:CDS |
| AGATTTGCGATTTCCAATTT+GGG | 0.327058 | 5_4:+60486712 | Msa0861230:CDS |
| CAAATTGGAAATCGCAAATC+TGG | 0.332402 | 5_4:-60486710 | None:intergenic |
| AGGAATTTGCCGAAAGTATC+AGG | 0.335653 | 5_4:-60488866 | None:intergenic |
| AATCGTGATGTTTCACTCTA+AGG | 0.341127 | 5_4:-60488886 | None:intergenic |
| TAGGAACTACCTGATACTTT+CGG | 0.400617 | 5_4:+60488857 | Msa0861230:intron |
| TCCGAACATCACATTTGGTA+TGG | 0.417548 | 5_4:-60488972 | None:intergenic |
| ATCTACTTCCACCAAGGTAC+TGG | 0.428620 | 5_4:-60488605 | None:intergenic |
| CGATTTCCAATTTGGGGAAG+AGG | 0.437138 | 5_4:+60486719 | Msa0861230:CDS |
| GGGTTTGCGATTTGGGGAAG+AGG | 0.446038 | 5_4:+60486676 | Msa0861230:CDS |
| CCGAACATCACATTTGGTAT+GGG | 0.451435 | 5_4:-60488971 | None:intergenic |
| GAGCAATGGCACTTGCTAGA+TGG | 0.455163 | 5_4:+60488465 | Msa0861230:CDS |
| TGCCGCACTCATGGAATGAT+AGG | 0.462626 | 5_4:-60488676 | None:intergenic |
| TTGTGCTGCCAATGGTATTG+AGG | 0.463000 | 5_4:+60489012 | Msa0861230:CDS |
| TATGTTCCAGAATTTGGGTA+AGG | 0.469282 | 5_4:+60486654 | None:intergenic |
| CCAAATGTGATGTTCGGAAA+AGG | 0.475440 | 5_4:+60488977 | Msa0861230:CDS |
| TAAATATTTGTACGAGCTAC+CGG | 0.476243 | 5_4:+60488443 | Msa0861230:CDS |
| CCCATACCAAATGTGATGTT+CGG | 0.477035 | 5_4:+60488971 | Msa0861230:CDS |
| ACACGATGCTGCCGCACTCA+TGG | 0.487735 | 5_4:-60488685 | None:intergenic |
| TTTGCGATTTGGGGAAGAGG+TGG | 0.493792 | 5_4:+60486679 | Msa0861230:CDS |
| TGTGCTGCCAATGGTATTGA+GGG | 0.501205 | 5_4:+60489013 | Msa0861230:CDS |
| ATTATTGCTTTCCAGTACCT+TGG | 0.503165 | 5_4:+60488594 | Msa0861230:CDS |
| TGTTCCAGAATTTGGGTAAG+GGG | 0.521801 | 5_4:+60486656 | None:intergenic |
| ACGGAAATGATATTGTCATA+AGG | 0.522697 | 5_4:-60488926 | None:intergenic |
| GGTAAGGGGTTTGCGATTTG+GGG | 0.534352 | 5_4:+60486670 | Msa0861230:CDS |
| TCTAGCAAGTGCCATTGCTC+CGG | 0.534587 | 5_4:-60488462 | None:intergenic |
| GATTTGCGATTTCCAATTTG+GGG | 0.537951 | 5_4:+60486713 | Msa0861230:CDS |
| TGATAGGGTGGATAATCAGC+TGG | 0.541144 | 5_4:-60488660 | None:intergenic |
| ATGTTCCAGAATTTGGGTAA+GGG | 0.545563 | 5_4:+60486655 | None:intergenic |
| AGTCAGCCGTTGTTGACAGA+TGG | 0.548377 | 5_4:+60488528 | Msa0861230:CDS |
| ATTGCTTTCCAGTACCTTGG+TGG | 0.549152 | 5_4:+60488597 | Msa0861230:CDS |
| AGCCGTTGTTGACAGATGGT+TGG | 0.550734 | 5_4:+60488532 | Msa0861230:CDS |
| CGAACATCACATTTGGTATG+GGG | 0.552019 | 5_4:-60488970 | None:intergenic |
| TTTCAAGTGCAAGTGCGTCA+TGG | 0.567746 | 5_4:+60489051 | Msa0861230:CDS |
| TTTCCAATTTGGGGAAGAGG+AGG | 0.577832 | 5_4:+60486722 | Msa0861230:CDS |
| GTCTCCGCCCTCAATACCAT+TGG | 0.581950 | 5_4:-60489020 | None:intergenic |
| ATTTGGGGAAGAGGAGGAGA+AGG | 0.584196 | 5_4:+60486728 | Msa0861230:CDS |
| GTCTGTATATTTGAGTCTCA+CGG | 0.587084 | 5_4:-60488945 | None:intergenic |
| TGGCACTTGCTAGATGGTGA+TGG | 0.587936 | 5_4:+60488471 | Msa0861230:CDS |
| ATTTGGGGAAGAGGTGGAGA+AGG | 0.588798 | 5_4:+60486685 | Msa0861230:CDS |
| TATCCAGATAGGAACTTCAA+AGG | 0.596572 | 5_4:-60488715 | None:intergenic |
| ATGTGATGTTCGGAAAAGGT+TGG | 0.606400 | 5_4:+60488981 | Msa0861230:CDS |
| GGCACTTGCTAGATGGTGAT+GGG | 0.608333 | 5_4:+60488472 | Msa0861230:CDS |
| TGTACGAGCTACCGGAGCAA+TGG | 0.612121 | 5_4:+60488451 | Msa0861230:CDS |
| GCCGCACTCATGGAATGATA+GGG | 0.629158 | 5_4:-60488675 | None:intergenic |
| ACCCTATCATTCCATGAGTG+CGG | 0.640367 | 5_4:+60488674 | Msa0861230:CDS |
| GCACTCATGGAATGATAGGG+TGG | 0.649652 | 5_4:-60488672 | None:intergenic |
| TTTGAAATCTACTTCCACCA+AGG | 0.681040 | 5_4:-60488611 | None:intergenic |
| CTCCAACCATCTGTCAACAA+CGG | 0.713268 | 5_4:-60488534 | None:intergenic |
| GCTGCCAATGGTATTGAGGG+CGG | 0.739556 | 5_4:+60489016 | Msa0861230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATCTTTTTTTAGTTA+AGG | + | chr5_4:60486983-60487002 | Msa0861230:intron | 10.0% |
| !!! | AATAATCTTTTTTTAGTTAA+GGG | + | chr5_4:60486984-60487003 | Msa0861230:intron | 10.0% |
| !!! | AAATAATCTTTTTTTAGTTA+AGG | + | chr5_4:60486983-60487002 | Msa0861230:intron | 10.0% |
| !!! | AATAATCTTTTTTTAGTTAA+GGG | + | chr5_4:60486984-60487003 | Msa0861230:intron | 10.0% |
| !!! | AAAAAACTTAAATGTTCTTT+TGG | + | chr5_4:60486802-60486821 | Msa0861230:intron | 15.0% |
| !! | AAAATTCAAAAAAAACGTTA+GGG | - | chr5_4:60486904-60486923 | None:intergenic | 15.0% |
| !! | AAAAATTCAAAAAAAACGTT+AGG | - | chr5_4:60486905-60486924 | None:intergenic | 15.0% |
| !! | TAATACCAAAAATATAGTTA+AGG | + | chr5_4:60487014-60487033 | Msa0861230:intron | 15.0% |
| !! | AATACCAAAAATATAGTTAA+GGG | + | chr5_4:60487015-60487034 | Msa0861230:intron | 15.0% |
| !!! | TAAAATTCAATAATTTGTCT+AGG | + | chr5_4:60487333-60487352 | Msa0861230:intron | 15.0% |
| !!! | TAGTTCTTTTTTTTTTTTTG+AGG | + | chr5_4:60487412-60487431 | Msa0861230:intron | 15.0% |
| !! | TATATATGCTATGAAAAATA+GGG | - | chr5_4:60487589-60487608 | None:intergenic | 15.0% |
| !! | ATATATATGCTATGAAAAAT+AGG | - | chr5_4:60487590-60487609 | None:intergenic | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | + | chr5_4:60488797-60488816 | Msa0861230:intron | 15.0% |
| !!! | CAGATTTTTTTCTTTTTTTT+AGG | + | chr5_4:60488838-60488857 | Msa0861230:intron | 15.0% |
| !!! | AAAAAACTTAAATGTTCTTT+TGG | + | chr5_4:60486802-60486821 | Msa0861230:intron | 15.0% |
| !! | AAAATTCAAAAAAAACGTTA+GGG | - | chr5_4:60486904-60486923 | None:intergenic | 15.0% |
| !! | AAAAATTCAAAAAAAACGTT+AGG | - | chr5_4:60486905-60486924 | None:intergenic | 15.0% |
| !! | TAATACCAAAAATATAGTTA+AGG | + | chr5_4:60487014-60487033 | Msa0861230:intron | 15.0% |
| !! | AATACCAAAAATATAGTTAA+GGG | + | chr5_4:60487015-60487034 | Msa0861230:intron | 15.0% |
| !!! | TAAAATTCAATAATTTGTCT+AGG | + | chr5_4:60487333-60487352 | Msa0861230:intron | 15.0% |
| !!! | TAGTTCTTTTTTTTTTTTTG+AGG | + | chr5_4:60487412-60487431 | Msa0861230:intron | 15.0% |
| !! | TATATATGCTATGAAAAATA+GGG | - | chr5_4:60487589-60487608 | None:intergenic | 15.0% |
| !! | ATATATATGCTATGAAAAAT+AGG | - | chr5_4:60487590-60487609 | None:intergenic | 15.0% |
| !! | GTTTATATATGCTATAATAA+AGG | + | chr5_4:60488797-60488816 | Msa0861230:intron | 15.0% |
| !!! | CAGATTTTTTTCTTTTTTTT+AGG | + | chr5_4:60488838-60488857 | Msa0861230:intron | 15.0% |
| !! | GATACCAAATAAATACTTAA+GGG | - | chr5_4:60486829-60486848 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | + | chr5_4:60486923-60486942 | Msa0861230:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | + | chr5_4:60486924-60486943 | Msa0861230:intron | 20.0% |
| !!! | CTATATTTTTGGTATTACTT+TGG | - | chr5_4:60487011-60487030 | None:intergenic | 20.0% |
| !! | TAATTACACTCATTCAATTT+AGG | - | chr5_4:60487059-60487078 | None:intergenic | 20.0% |
| !!! | TGATAATCAAAGCTATATTT+TGG | + | chr5_4:60487139-60487158 | Msa0861230:intron | 20.0% |
| !!! | ATATTTTGAAGTTTGTGAAA+AGG | + | chr5_4:60487222-60487241 | Msa0861230:intron | 20.0% |
| !!! | GACAAATTATTGAATTTTAG+TGG | - | chr5_4:60487332-60487351 | None:intergenic | 20.0% |
| !! | ATTCTAGTCATATAAATCAT+TGG | + | chr5_4:60487680-60487699 | Msa0861230:intron | 20.0% |
| !! | TTCTAGTCATATAAATCATT+GGG | + | chr5_4:60487681-60487700 | Msa0861230:intron | 20.0% |
| !!! | GCTTTTATAATAAAGGATAA+GGG | - | chr5_4:60487726-60487745 | None:intergenic | 20.0% |
| !!! | AGCTTTTATAATAAAGGATA+AGG | - | chr5_4:60487727-60487746 | None:intergenic | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | - | chr5_4:60487733-60487752 | None:intergenic | 20.0% |
| !! | ATATCAAATGCAATTAAAGT+CGG | + | chr5_4:60487941-60487960 | Msa0861230:intron | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | - | chr5_4:60488188-60488207 | None:intergenic | 20.0% |
| !! | TTTCTATTTAAATACGATGA+AGG | + | chr5_4:60488269-60488288 | Msa0861230:intron | 20.0% |
| !! | TTCTATTTAAATACGATGAA+GGG | + | chr5_4:60488270-60488289 | Msa0861230:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+AGG | - | chr5_4:60488385-60488404 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | - | chr5_4:60488757-60488776 | None:intergenic | 20.0% |
| !! | GATACCAAATAAATACTTAA+GGG | - | chr5_4:60486829-60486848 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | + | chr5_4:60486923-60486942 | Msa0861230:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | + | chr5_4:60486924-60486943 | Msa0861230:intron | 20.0% |
| !!! | CTATATTTTTGGTATTACTT+TGG | - | chr5_4:60487011-60487030 | None:intergenic | 20.0% |
| !! | TAATTACACTCATTCAATTT+AGG | - | chr5_4:60487059-60487078 | None:intergenic | 20.0% |
| !!! | TGATAATCAAAGCTATATTT+TGG | + | chr5_4:60487139-60487158 | Msa0861230:intron | 20.0% |
| !!! | ATATTTTGAAGTTTGTGAAA+AGG | + | chr5_4:60487222-60487241 | Msa0861230:intron | 20.0% |
| !!! | GACAAATTATTGAATTTTAG+TGG | - | chr5_4:60487332-60487351 | None:intergenic | 20.0% |
| !! | ATTCTAGTCATATAAATCAT+TGG | + | chr5_4:60487680-60487699 | Msa0861230:intron | 20.0% |
| !! | TTCTAGTCATATAAATCATT+GGG | + | chr5_4:60487681-60487700 | Msa0861230:intron | 20.0% |
| !!! | GCTTTTATAATAAAGGATAA+GGG | - | chr5_4:60487726-60487745 | None:intergenic | 20.0% |
| !!! | AGCTTTTATAATAAAGGATA+AGG | - | chr5_4:60487727-60487746 | None:intergenic | 20.0% |
| !!! | AAGTCTAGCTTTTATAATAA+AGG | - | chr5_4:60487733-60487752 | None:intergenic | 20.0% |
| !! | ATATCAAATGCAATTAAAGT+CGG | + | chr5_4:60487941-60487960 | Msa0861230:intron | 20.0% |
| !! | TTAACTTTAGTGGTAAAATT+TGG | - | chr5_4:60488188-60488207 | None:intergenic | 20.0% |
| !! | TTTCTATTTAAATACGATGA+AGG | + | chr5_4:60488269-60488288 | Msa0861230:intron | 20.0% |
| !! | TTCTATTTAAATACGATGAA+GGG | + | chr5_4:60488270-60488289 | Msa0861230:intron | 20.0% |
| !! | TTAGACAGTGTATTAAAAAA+AGG | - | chr5_4:60488385-60488404 | None:intergenic | 20.0% |
| !! | AAAAAACAATAAACAACCTT+CGG | - | chr5_4:60488757-60488776 | None:intergenic | 20.0% |
| ! | CGATACCAAATAAATACTTA+AGG | - | chr5_4:60486830-60486849 | None:intergenic | 25.0% |
| !! | GTATTTATTTGGTATCGTTT+TGG | + | chr5_4:60486833-60486852 | Msa0861230:intron | 25.0% |
| ! | TTGAATGAGTGTAATTATAG+AGG | + | chr5_4:60487062-60487081 | Msa0861230:intron | 25.0% |
| !! | AGCAAATATTAGTCTCATTA+GGG | - | chr5_4:60487522-60487541 | None:intergenic | 25.0% |
| ! | TAATATTTGCTCAAGTACTT+CGG | + | chr5_4:60487531-60487550 | Msa0861230:intron | 25.0% |
| ! | TCATATAAATCATTGGGAAT+AGG | + | chr5_4:60487687-60487706 | Msa0861230:intron | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | - | chr5_4:60487818-60487837 | None:intergenic | 25.0% |
| ! | TTTGATTAGCAATTAGTGTA+GGG | - | chr5_4:60487976-60487995 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGCAATTAGTGT+AGG | - | chr5_4:60487977-60487996 | None:intergenic | 25.0% |
| !! | ATGTGCATGAAAATAACTTT+TGG | + | chr5_4:60488309-60488328 | Msa0861230:intron | 25.0% |
| !! | TTTTGATGCTATTCATTTAG+AGG | + | chr5_4:60488775-60488794 | Msa0861230:intron | 25.0% |
| ! | CGATACCAAATAAATACTTA+AGG | - | chr5_4:60486830-60486849 | None:intergenic | 25.0% |
| !! | GTATTTATTTGGTATCGTTT+TGG | + | chr5_4:60486833-60486852 | Msa0861230:intron | 25.0% |
| ! | TTGAATGAGTGTAATTATAG+AGG | + | chr5_4:60487062-60487081 | Msa0861230:intron | 25.0% |
| !! | AGCAAATATTAGTCTCATTA+GGG | - | chr5_4:60487522-60487541 | None:intergenic | 25.0% |
| ! | TAATATTTGCTCAAGTACTT+CGG | + | chr5_4:60487531-60487550 | Msa0861230:intron | 25.0% |
| ! | TCATATAAATCATTGGGAAT+AGG | + | chr5_4:60487687-60487706 | Msa0861230:intron | 25.0% |
| ! | TTAGTCATTAGTACATGTTT+AGG | - | chr5_4:60487818-60487837 | None:intergenic | 25.0% |
| ! | TTTGATTAGCAATTAGTGTA+GGG | - | chr5_4:60487976-60487995 | None:intergenic | 25.0% |
| !!! | TTTTGATTAGCAATTAGTGT+AGG | - | chr5_4:60487977-60487996 | None:intergenic | 25.0% |
| !! | ATGTGCATGAAAATAACTTT+TGG | + | chr5_4:60488309-60488328 | Msa0861230:intron | 25.0% |
| !! | TTTTGATGCTATTCATTTAG+AGG | + | chr5_4:60488775-60488794 | Msa0861230:intron | 25.0% |
| AGATTTGCGATTTCCAATTT+GGG | + | chr5_4:60486712-60486731 | Msa0861230:CDS | 30.0% | |
| TGGTCCCTTAAGTATTTATT+TGG | + | chr5_4:60486822-60486841 | Msa0861230:intron | 30.0% | |
| ! | TGGTCCCTTAACTATATTTT+TGG | - | chr5_4:60487022-60487041 | None:intergenic | 30.0% |
| ! | TTTAGGCTTAAATGCGTTTT+TGG | - | chr5_4:60487042-60487061 | None:intergenic | 30.0% |
| ATTTCTCTTTCCTCTTACTT+CGG | - | chr5_4:60487113-60487132 | None:intergenic | 30.0% | |
| !!! | AGCTATATTTTGGTGCAAAA+TGG | + | chr5_4:60487149-60487168 | Msa0861230:intron | 30.0% |
| AGAAAATCTAGAGAGTCATA+GGG | - | chr5_4:60487474-60487493 | None:intergenic | 30.0% | |
| ! | AATATTAGTCTCATTAGGGA+GGG | - | chr5_4:60487518-60487537 | None:intergenic | 30.0% |
| ! | AAATATTAGTCTCATTAGGG+AGG | - | chr5_4:60487519-60487538 | None:intergenic | 30.0% |
| ! | GAGCAAATATTAGTCTCATT+AGG | - | chr5_4:60487523-60487542 | None:intergenic | 30.0% |
| TATGCTATGAAAAATAGGGA+TGG | - | chr5_4:60487585-60487604 | None:intergenic | 30.0% | |
| AATCATTGGGAATAGGAAAA+TGG | + | chr5_4:60487694-60487713 | Msa0861230:intron | 30.0% | |
| ! | TTATAAAAGCTAGACTTGCT+TGG | + | chr5_4:60487736-60487755 | Msa0861230:intron | 30.0% |
| TCATTAGTACATGTTTAGGA+GGG | - | chr5_4:60487814-60487833 | None:intergenic | 30.0% | |
| !! | ATTGTTAGGCTTTGAATCAA+CGG | - | chr5_4:60487885-60487904 | None:intergenic | 30.0% |
| !! | TATTATGAGAGAGCATTGTT+AGG | - | chr5_4:60487899-60487918 | None:intergenic | 30.0% |
| TTGATTAGCAATTAGTGTAG+GGG | - | chr5_4:60487975-60487994 | None:intergenic | 30.0% | |
| !!! | GTACGAAGAACACTTTTTTA+AGG | - | chr5_4:60488069-60488088 | None:intergenic | 30.0% |
| ATCTTCCTATCACTCTATTT+CGG | - | chr5_4:60488141-60488160 | None:intergenic | 30.0% | |
| ATAGGAAGATATGCGTTTAA+AGG | + | chr5_4:60488151-60488170 | Msa0861230:intron | 30.0% | |
| ! | GAACGAACATTTAACTTTAG+TGG | - | chr5_4:60488198-60488217 | None:intergenic | 30.0% |
| ! | GCATGAAAATAACTTTTGGT+TGG | + | chr5_4:60488313-60488332 | Msa0861230:intron | 30.0% |
| TAATACACTGTCTAACTTCT+TGG | + | chr5_4:60488390-60488409 | Msa0861230:intron | 30.0% | |
| TAAATATTTGTACGAGCTAC+CGG | + | chr5_4:60488443-60488462 | Msa0861230:CDS | 30.0% | |
| ACGGAAATGATATTGTCATA+AGG | - | chr5_4:60488929-60488948 | None:intergenic | 30.0% | |
| AGATTTGCGATTTCCAATTT+GGG | + | chr5_4:60486712-60486731 | Msa0861230:CDS | 30.0% | |
| TGGTCCCTTAAGTATTTATT+TGG | + | chr5_4:60486822-60486841 | Msa0861230:intron | 30.0% | |
| ! | TGGTCCCTTAACTATATTTT+TGG | - | chr5_4:60487022-60487041 | None:intergenic | 30.0% |
| ! | TTTAGGCTTAAATGCGTTTT+TGG | - | chr5_4:60487042-60487061 | None:intergenic | 30.0% |
| ATTTCTCTTTCCTCTTACTT+CGG | - | chr5_4:60487113-60487132 | None:intergenic | 30.0% | |
| !!! | AGCTATATTTTGGTGCAAAA+TGG | + | chr5_4:60487149-60487168 | Msa0861230:intron | 30.0% |
| AGAAAATCTAGAGAGTCATA+GGG | - | chr5_4:60487474-60487493 | None:intergenic | 30.0% | |
| ! | AATATTAGTCTCATTAGGGA+GGG | - | chr5_4:60487518-60487537 | None:intergenic | 30.0% |
| ! | AAATATTAGTCTCATTAGGG+AGG | - | chr5_4:60487519-60487538 | None:intergenic | 30.0% |
| ! | GAGCAAATATTAGTCTCATT+AGG | - | chr5_4:60487523-60487542 | None:intergenic | 30.0% |
| TATGCTATGAAAAATAGGGA+TGG | - | chr5_4:60487585-60487604 | None:intergenic | 30.0% | |
| AATCATTGGGAATAGGAAAA+TGG | + | chr5_4:60487694-60487713 | Msa0861230:intron | 30.0% | |
| ! | TTATAAAAGCTAGACTTGCT+TGG | + | chr5_4:60487736-60487755 | Msa0861230:intron | 30.0% |
| TCATTAGTACATGTTTAGGA+GGG | - | chr5_4:60487814-60487833 | None:intergenic | 30.0% | |
| !! | ATTGTTAGGCTTTGAATCAA+CGG | - | chr5_4:60487885-60487904 | None:intergenic | 30.0% |
| !! | TATTATGAGAGAGCATTGTT+AGG | - | chr5_4:60487899-60487918 | None:intergenic | 30.0% |
| TTGATTAGCAATTAGTGTAG+GGG | - | chr5_4:60487975-60487994 | None:intergenic | 30.0% | |
| !!! | GTACGAAGAACACTTTTTTA+AGG | - | chr5_4:60488069-60488088 | None:intergenic | 30.0% |
| ATCTTCCTATCACTCTATTT+CGG | - | chr5_4:60488141-60488160 | None:intergenic | 30.0% | |
| ATAGGAAGATATGCGTTTAA+AGG | + | chr5_4:60488151-60488170 | Msa0861230:intron | 30.0% | |
| ! | GAACGAACATTTAACTTTAG+TGG | - | chr5_4:60488198-60488217 | None:intergenic | 30.0% |
| ! | GCATGAAAATAACTTTTGGT+TGG | + | chr5_4:60488313-60488332 | Msa0861230:intron | 30.0% |
| TAATACACTGTCTAACTTCT+TGG | + | chr5_4:60488390-60488409 | Msa0861230:intron | 30.0% | |
| TAAATATTTGTACGAGCTAC+CGG | + | chr5_4:60488443-60488462 | Msa0861230:CDS | 30.0% | |
| ACGGAAATGATATTGTCATA+AGG | - | chr5_4:60488929-60488948 | None:intergenic | 30.0% | |
| CAAATTGGAAATCGCAAATC+TGG | - | chr5_4:60486713-60486732 | None:intergenic | 35.0% | |
| CAGATTTGCGATTTCCAATT+TGG | + | chr5_4:60486711-60486730 | Msa0861230:CDS | 35.0% | |
| GATTTGCGATTTCCAATTTG+GGG | + | chr5_4:60486713-60486732 | Msa0861230:CDS | 35.0% | |
| ! | TTTATCTCCGTTACCTGTTT+TGG | - | chr5_4:60486951-60486970 | None:intergenic | 35.0% |
| GAGAAAATCTAGAGAGTCAT+AGG | - | chr5_4:60487475-60487494 | None:intergenic | 35.0% | |
| ! | AACTTAAAGCTTTGGTCACT+TGG | + | chr5_4:60487558-60487577 | Msa0861230:intron | 35.0% |
| TTTAGGAGGGAAAAATGCTA+GGG | - | chr5_4:60487801-60487820 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | - | chr5_4:60487815-60487834 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | - | chr5_4:60487852-60487871 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | - | chr5_4:60487860-60487879 | None:intergenic | 35.0% | |
| !! | TTGTTAGGCTTTGAATCAAC+GGG | - | chr5_4:60487884-60487903 | None:intergenic | 35.0% |
| TCTCGGATAACACTTTCTAA+GGG | - | chr5_4:60488013-60488032 | None:intergenic | 35.0% | |
| ATCTCGGATAACACTTTCTA+AGG | - | chr5_4:60488014-60488033 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr5_4:60488594-60488613 | Msa0861230:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr5_4:60488614-60488633 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | - | chr5_4:60488718-60488737 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | + | chr5_4:60488718-60488737 | Msa0861230:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | + | chr5_4:60488857-60488876 | Msa0861230:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | - | chr5_4:60488889-60488908 | None:intergenic | 35.0% | |
| GTCTGTATATTTGAGTCTCA+CGG | - | chr5_4:60488948-60488967 | None:intergenic | 35.0% | |
| CAAATTGGAAATCGCAAATC+TGG | - | chr5_4:60486713-60486732 | None:intergenic | 35.0% | |
| CAGATTTGCGATTTCCAATT+TGG | + | chr5_4:60486711-60486730 | Msa0861230:CDS | 35.0% | |
| GATTTGCGATTTCCAATTTG+GGG | + | chr5_4:60486713-60486732 | Msa0861230:CDS | 35.0% | |
| ! | TTTATCTCCGTTACCTGTTT+TGG | - | chr5_4:60486951-60486970 | None:intergenic | 35.0% |
| GAGAAAATCTAGAGAGTCAT+AGG | - | chr5_4:60487475-60487494 | None:intergenic | 35.0% | |
| ! | AACTTAAAGCTTTGGTCACT+TGG | + | chr5_4:60487558-60487577 | Msa0861230:intron | 35.0% |
| TTTAGGAGGGAAAAATGCTA+GGG | - | chr5_4:60487801-60487820 | None:intergenic | 35.0% | |
| GTCATTAGTACATGTTTAGG+AGG | - | chr5_4:60487815-60487834 | None:intergenic | 35.0% | |
| GTGTGAAAATAGAGGTTGAA+CGG | - | chr5_4:60487852-60487871 | None:intergenic | 35.0% | |
| GTGATCAAGTGTGAAAATAG+AGG | - | chr5_4:60487860-60487879 | None:intergenic | 35.0% | |
| !! | TTGTTAGGCTTTGAATCAAC+GGG | - | chr5_4:60487884-60487903 | None:intergenic | 35.0% |
| TCTCGGATAACACTTTCTAA+GGG | - | chr5_4:60488013-60488032 | None:intergenic | 35.0% | |
| ATCTCGGATAACACTTTCTA+AGG | - | chr5_4:60488014-60488033 | None:intergenic | 35.0% | |
| ATTATTGCTTTCCAGTACCT+TGG | + | chr5_4:60488594-60488613 | Msa0861230:CDS | 35.0% | |
| ! | TTTGAAATCTACTTCCACCA+AGG | - | chr5_4:60488614-60488633 | None:intergenic | 35.0% |
| TATCCAGATAGGAACTTCAA+AGG | - | chr5_4:60488718-60488737 | None:intergenic | 35.0% | |
| TTGAAGTTCCTATCTGGATA+TGG | + | chr5_4:60488718-60488737 | Msa0861230:intron | 35.0% | |
| TAGGAACTACCTGATACTTT+CGG | + | chr5_4:60488857-60488876 | Msa0861230:intron | 35.0% | |
| AATCGTGATGTTTCACTCTA+AGG | - | chr5_4:60488889-60488908 | None:intergenic | 35.0% | |
| GTCTGTATATTTGAGTCTCA+CGG | - | chr5_4:60488948-60488967 | None:intergenic | 35.0% | |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | + | chr5_4:60486846-60486865 | Msa0861230:intron | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | + | chr5_4:60486847-60486866 | Msa0861230:intron | 40.0% |
| ! | AACACACCAACCCAGATTTT+GGG | - | chr5_4:60486860-60486879 | None:intergenic | 40.0% |
| TTACTTCGGAGAAGATGAAG+GGG | - | chr5_4:60487099-60487118 | None:intergenic | 40.0% | |
| CTTACTTCGGAGAAGATGAA+GGG | - | chr5_4:60487100-60487119 | None:intergenic | 40.0% | |
| TCTTACTTCGGAGAAGATGA+AGG | - | chr5_4:60487101-60487120 | None:intergenic | 40.0% | |
| TTCATCTTCTCCGAAGTAAG+AGG | + | chr5_4:60487100-60487119 | Msa0861230:intron | 40.0% | |
| TCGGTTGCAACTTAAAGCTT+TGG | + | chr5_4:60487550-60487569 | Msa0861230:intron | 40.0% | |
| TCTGAAGAGAAGAGAAGTGA+AGG | - | chr5_4:60487623-60487642 | None:intergenic | 40.0% | |
| GGGCAAAGAATGGTGAATTA+GGG | - | chr5_4:60487774-60487793 | None:intergenic | 40.0% | |
| AGGGCAAAGAATGGTGAATT+AGG | - | chr5_4:60487775-60487794 | None:intergenic | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | - | chr5_4:60487794-60487813 | None:intergenic | 40.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | - | chr5_4:60487795-60487814 | None:intergenic | 40.0% | |
| GTTTAGGAGGGAAAAATGCT+AGG | - | chr5_4:60487802-60487821 | None:intergenic | 40.0% | |
| GTTATCCGAGATAGAGTGAT+AGG | + | chr5_4:60488022-60488041 | Msa0861230:intron | 40.0% | |
| TTCCTCCTATCACTCTATCT+CGG | - | chr5_4:60488030-60488049 | None:intergenic | 40.0% | |
| GCTATCCGAAATAGAGTGAT+AGG | + | chr5_4:60488133-60488152 | Msa0861230:intron | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | + | chr5_4:60488220-60488239 | Msa0861230:intron | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | + | chr5_4:60488712-60488731 | Msa0861230:intron | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | - | chr5_4:60488869-60488888 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | - | chr5_4:60488973-60488992 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr5_4:60488974-60488993 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr5_4:60488971-60488990 | Msa0861230:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr5_4:60488975-60488994 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr5_4:60488980-60488999 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr5_4:60488977-60488996 | Msa0861230:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr5_4:60488981-60489000 | Msa0861230:CDS | 40.0% | |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | + | chr5_4:60486846-60486865 | Msa0861230:intron | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | + | chr5_4:60486847-60486866 | Msa0861230:intron | 40.0% |
| ! | AACACACCAACCCAGATTTT+GGG | - | chr5_4:60486860-60486879 | None:intergenic | 40.0% |
| TTACTTCGGAGAAGATGAAG+GGG | - | chr5_4:60487099-60487118 | None:intergenic | 40.0% | |
| CTTACTTCGGAGAAGATGAA+GGG | - | chr5_4:60487100-60487119 | None:intergenic | 40.0% | |
| TCTTACTTCGGAGAAGATGA+AGG | - | chr5_4:60487101-60487120 | None:intergenic | 40.0% | |
| TTCATCTTCTCCGAAGTAAG+AGG | + | chr5_4:60487100-60487119 | Msa0861230:intron | 40.0% | |
| TCGGTTGCAACTTAAAGCTT+TGG | + | chr5_4:60487550-60487569 | Msa0861230:intron | 40.0% | |
| TCTGAAGAGAAGAGAAGTGA+AGG | - | chr5_4:60487623-60487642 | None:intergenic | 40.0% | |
| GGGCAAAGAATGGTGAATTA+GGG | - | chr5_4:60487774-60487793 | None:intergenic | 40.0% | |
| AGGGCAAAGAATGGTGAATT+AGG | - | chr5_4:60487775-60487794 | None:intergenic | 40.0% | |
| GGGAAAAATGCTAGGGATTA+GGG | - | chr5_4:60487794-60487813 | None:intergenic | 40.0% | |
| AGGGAAAAATGCTAGGGATT+AGG | - | chr5_4:60487795-60487814 | None:intergenic | 40.0% | |
| GTTTAGGAGGGAAAAATGCT+AGG | - | chr5_4:60487802-60487821 | None:intergenic | 40.0% | |
| GTTATCCGAGATAGAGTGAT+AGG | + | chr5_4:60488022-60488041 | Msa0861230:intron | 40.0% | |
| TTCCTCCTATCACTCTATCT+CGG | - | chr5_4:60488030-60488049 | None:intergenic | 40.0% | |
| GCTATCCGAAATAGAGTGAT+AGG | + | chr5_4:60488133-60488152 | Msa0861230:intron | 40.0% | |
| CACAGTGCATGTAGAAAATC+AGG | + | chr5_4:60488220-60488239 | Msa0861230:intron | 40.0% | |
| !! | GTACCTTTGAAGTTCCTATC+TGG | + | chr5_4:60488712-60488731 | Msa0861230:intron | 40.0% |
| !! | AGGAATTTGCCGAAAGTATC+AGG | - | chr5_4:60488869-60488888 | None:intergenic | 40.0% |
| CGAACATCACATTTGGTATG+GGG | - | chr5_4:60488973-60488992 | None:intergenic | 40.0% | |
| CCGAACATCACATTTGGTAT+GGG | - | chr5_4:60488974-60488993 | None:intergenic | 40.0% | |
| CCCATACCAAATGTGATGTT+CGG | + | chr5_4:60488971-60488990 | Msa0861230:CDS | 40.0% | |
| TCCGAACATCACATTTGGTA+TGG | - | chr5_4:60488975-60488994 | None:intergenic | 40.0% | |
| ! | CCTTTTCCGAACATCACATT+TGG | - | chr5_4:60488980-60488999 | None:intergenic | 40.0% |
| CCAAATGTGATGTTCGGAAA+AGG | + | chr5_4:60488977-60488996 | Msa0861230:CDS | 40.0% | |
| ATGTGATGTTCGGAAAAGGT+TGG | + | chr5_4:60488981-60489000 | Msa0861230:CDS | 40.0% | |
| CGATTTCCAATTTGGGGAAG+AGG | + | chr5_4:60486719-60486738 | Msa0861230:CDS | 45.0% | |
| TTTCCAATTTGGGGAAGAGG+AGG | + | chr5_4:60486722-60486741 | Msa0861230:CDS | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | + | chr5_4:60486851-60486870 | Msa0861230:intron | 45.0% | |
| ! | CAACACACCAACCCAGATTT+TGG | - | chr5_4:60486861-60486880 | None:intergenic | 45.0% |
| TTAACGGAAGGGACCAAAAC+AGG | + | chr5_4:60486935-60486954 | Msa0861230:intron | 45.0% | |
| GAAGGGACCAAAACAGGTAA+CGG | + | chr5_4:60486941-60486960 | Msa0861230:intron | 45.0% | |
| ATCTAGAGAGTCATAGGGTG+TGG | - | chr5_4:60487469-60487488 | None:intergenic | 45.0% | |
| GGTCAAGTGAACAAAGCTTG+TGG | - | chr5_4:60487497-60487516 | None:intergenic | 45.0% | |
| CTAGGGATTAGGGCAAAGAA+TGG | - | chr5_4:60487784-60487803 | None:intergenic | 45.0% | |
| ATCCGAGATAGAGTGATAGG+AGG | + | chr5_4:60488025-60488044 | Msa0861230:intron | 45.0% | |
| CTCCAACCATCTGTCAACAA+CGG | - | chr5_4:60488537-60488556 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr5_4:60488597-60488616 | Msa0861230:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr5_4:60488608-60488627 | None:intergenic | 45.0% | |
| TGATAGGGTGGATAATCAGC+TGG | - | chr5_4:60488663-60488682 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr5_4:60488674-60488693 | Msa0861230:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | - | chr5_4:60488729-60488748 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr5_4:60489004-60489023 | Msa0861230:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr5_4:60489012-60489031 | Msa0861230:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr5_4:60489013-60489032 | Msa0861230:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr5_4:60489051-60489070 | Msa0861230:CDS | 45.0% |
| CGATTTCCAATTTGGGGAAG+AGG | + | chr5_4:60486719-60486738 | Msa0861230:CDS | 45.0% | |
| TTTCCAATTTGGGGAAGAGG+AGG | + | chr5_4:60486722-60486741 | Msa0861230:CDS | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | + | chr5_4:60486851-60486870 | Msa0861230:intron | 45.0% | |
| ! | CAACACACCAACCCAGATTT+TGG | - | chr5_4:60486861-60486880 | None:intergenic | 45.0% |
| TTAACGGAAGGGACCAAAAC+AGG | + | chr5_4:60486935-60486954 | Msa0861230:intron | 45.0% | |
| GAAGGGACCAAAACAGGTAA+CGG | + | chr5_4:60486941-60486960 | Msa0861230:intron | 45.0% | |
| ATCTAGAGAGTCATAGGGTG+TGG | - | chr5_4:60487469-60487488 | None:intergenic | 45.0% | |
| GGTCAAGTGAACAAAGCTTG+TGG | - | chr5_4:60487497-60487516 | None:intergenic | 45.0% | |
| CTAGGGATTAGGGCAAAGAA+TGG | - | chr5_4:60487784-60487803 | None:intergenic | 45.0% | |
| ATCCGAGATAGAGTGATAGG+AGG | + | chr5_4:60488025-60488044 | Msa0861230:intron | 45.0% | |
| CTCCAACCATCTGTCAACAA+CGG | - | chr5_4:60488537-60488556 | None:intergenic | 45.0% | |
| ATTGCTTTCCAGTACCTTGG+TGG | + | chr5_4:60488597-60488616 | Msa0861230:CDS | 45.0% | |
| ATCTACTTCCACCAAGGTAC+TGG | - | chr5_4:60488608-60488627 | None:intergenic | 45.0% | |
| TGATAGGGTGGATAATCAGC+TGG | - | chr5_4:60488663-60488682 | None:intergenic | 45.0% | |
| ACCCTATCATTCCATGAGTG+CGG | + | chr5_4:60488674-60488693 | Msa0861230:CDS | 45.0% | |
| TCGTCGATCCATATCCAGAT+AGG | - | chr5_4:60488729-60488748 | None:intergenic | 45.0% | |
| ! | ACGAGTTTTTGTGCTGCCAA+TGG | + | chr5_4:60489004-60489023 | Msa0861230:CDS | 45.0% |
| TTGTGCTGCCAATGGTATTG+AGG | + | chr5_4:60489012-60489031 | Msa0861230:CDS | 45.0% | |
| ! | TGTGCTGCCAATGGTATTGA+GGG | + | chr5_4:60489013-60489032 | Msa0861230:CDS | 45.0% |
| ! | TTTCAAGTGCAAGTGCGTCA+TGG | + | chr5_4:60489051-60489070 | Msa0861230:CDS | 45.0% |
| !!! | ATTTTTTTGAATTTATTTAA+CGG | + | chr5_4:60486919-60486938 | Msa0861230:intron | 5.0% |
| !!! | ATTTTTTTGAATTTATTTAA+CGG | + | chr5_4:60486919-60486938 | Msa0861230:intron | 5.0% |
| TGGGTAAGGGGTTTGCGATT+TGG | + | chr5_4:60486668-60486687 | Msa0861230:CDS | 50.0% | |
| GGGTAAGGGGTTTGCGATTT+GGG | + | chr5_4:60486669-60486688 | Msa0861230:CDS | 50.0% | |
| GGTAAGGGGTTTGCGATTTG+GGG | + | chr5_4:60486670-60486689 | Msa0861230:CDS | 50.0% | |
| ! | TTTGCGATTTGGGGAAGAGG+TGG | + | chr5_4:60486679-60486698 | Msa0861230:CDS | 50.0% |
| ATTTGGGGAAGAGGTGGAGA+AGG | + | chr5_4:60486685-60486704 | Msa0861230:CDS | 50.0% | |
| TCTCCTCCTCTTCCCCAAAT+TGG | - | chr5_4:60486728-60486747 | None:intergenic | 50.0% | |
| ATTTGGGGAAGAGGAGGAGA+AGG | + | chr5_4:60486728-60486747 | Msa0861230:CDS | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | - | chr5_4:60488465-60488484 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | + | chr5_4:60488465-60488484 | Msa0861230:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | + | chr5_4:60488471-60488490 | Msa0861230:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | + | chr5_4:60488472-60488491 | Msa0861230:CDS | 50.0% |
| AGTCAGCCGTTGTTGACAGA+TGG | + | chr5_4:60488528-60488547 | Msa0861230:CDS | 50.0% | |
| AGCCGTTGTTGACAGATGGT+TGG | + | chr5_4:60488532-60488551 | Msa0861230:CDS | 50.0% | |
| GCACTCATGGAATGATAGGG+TGG | - | chr5_4:60488675-60488694 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr5_4:60488678-60488697 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr5_4:60488679-60488698 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | + | chr5_4:60488738-60488757 | Msa0861230:intron | 50.0% | |
| TCGCAAACCCCTTACCCAAA+TGG | - | chr5_4:60486666-60486685 | None:intergenic | 50.0% | |
| TGGGTAAGGGGTTTGCGATT+TGG | + | chr5_4:60486668-60486687 | Msa0861230:CDS | 50.0% | |
| GGGTAAGGGGTTTGCGATTT+GGG | + | chr5_4:60486669-60486688 | Msa0861230:CDS | 50.0% | |
| GGTAAGGGGTTTGCGATTTG+GGG | + | chr5_4:60486670-60486689 | Msa0861230:CDS | 50.0% | |
| ! | TTTGCGATTTGGGGAAGAGG+TGG | + | chr5_4:60486679-60486698 | Msa0861230:CDS | 50.0% |
| ATTTGGGGAAGAGGTGGAGA+AGG | + | chr5_4:60486685-60486704 | Msa0861230:CDS | 50.0% | |
| TCTCCTCCTCTTCCCCAAAT+TGG | - | chr5_4:60486728-60486747 | None:intergenic | 50.0% | |
| ATTTGGGGAAGAGGAGGAGA+AGG | + | chr5_4:60486728-60486747 | Msa0861230:CDS | 50.0% | |
| ! | TCTAGCAAGTGCCATTGCTC+CGG | - | chr5_4:60488465-60488484 | None:intergenic | 50.0% |
| ! | GAGCAATGGCACTTGCTAGA+TGG | + | chr5_4:60488465-60488484 | Msa0861230:CDS | 50.0% |
| ! | TGGCACTTGCTAGATGGTGA+TGG | + | chr5_4:60488471-60488490 | Msa0861230:CDS | 50.0% |
| ! | GGCACTTGCTAGATGGTGAT+GGG | + | chr5_4:60488472-60488491 | Msa0861230:CDS | 50.0% |
| AGTCAGCCGTTGTTGACAGA+TGG | + | chr5_4:60488528-60488547 | Msa0861230:CDS | 50.0% | |
| AGCCGTTGTTGACAGATGGT+TGG | + | chr5_4:60488532-60488551 | Msa0861230:CDS | 50.0% | |
| GCACTCATGGAATGATAGGG+TGG | - | chr5_4:60488675-60488694 | None:intergenic | 50.0% | |
| GCCGCACTCATGGAATGATA+GGG | - | chr5_4:60488678-60488697 | None:intergenic | 50.0% | |
| TGCCGCACTCATGGAATGAT+AGG | - | chr5_4:60488679-60488698 | None:intergenic | 50.0% | |
| TGGATCGACGAAATCACCGA+AGG | + | chr5_4:60488738-60488757 | Msa0861230:intron | 50.0% | |
| ! | GGGTTTGCGATTTGGGGAAG+AGG | + | chr5_4:60486676-60486695 | Msa0861230:CDS | 55.0% |
| TGTACGAGCTACCGGAGCAA+TGG | + | chr5_4:60488451-60488470 | Msa0861230:CDS | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr5_4:60489016-60489035 | Msa0861230:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr5_4:60489023-60489042 | None:intergenic | 55.0% | |
| ! | GGGTTTGCGATTTGGGGAAG+AGG | + | chr5_4:60486676-60486695 | Msa0861230:CDS | 55.0% |
| TGTACGAGCTACCGGAGCAA+TGG | + | chr5_4:60488451-60488470 | Msa0861230:CDS | 55.0% | |
| ! | GCTGCCAATGGTATTGAGGG+CGG | + | chr5_4:60489016-60489035 | Msa0861230:CDS | 55.0% |
| GTCTCCGCCCTCAATACCAT+TGG | - | chr5_4:60489023-60489042 | None:intergenic | 55.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr5_4:60488688-60488707 | None:intergenic | 60.0% | |
| ACACGATGCTGCCGCACTCA+TGG | - | chr5_4:60488688-60488707 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 60486665 | 60489096 | 60486665 | ID=Msa0861230;Name=Msa0861230 |
| chr5_4 | mRNA | 60486665 | 60489096 | 60486665 | ID=Msa0861230-mRNA-1;Parent=Msa0861230;Name=Msa0861230-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.75|0.66|0|4|0|200 |
| chr5_4 | exon | 60486665 | 60486749 | 60486665 | ID=Msa0861230-mRNA-1:exon:18673;Parent=Msa0861230-mRNA-1 |
| chr5_4 | exon | 60488421 | 60488562 | 60488421 | ID=Msa0861230-mRNA-1:exon:18674;Parent=Msa0861230-mRNA-1 |
| chr5_4 | exon | 60488587 | 60488722 | 60488587 | ID=Msa0861230-mRNA-1:exon:18675;Parent=Msa0861230-mRNA-1 |
| chr5_4 | exon | 60488860 | 60489096 | 60488860 | ID=Msa0861230-mRNA-1:exon:18676;Parent=Msa0861230-mRNA-1 |
| chr5_4 | CDS | 60486665 | 60486749 | 60486665 | ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1 |
| chr5_4 | CDS | 60488421 | 60488562 | 60488421 | ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1 |
| chr5_4 | CDS | 60488587 | 60488722 | 60488587 | ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1 |
| chr5_4 | CDS | 60488860 | 60489096 | 60488860 | ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
