AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861230 MtrunA17_Chr5g0393501 32.308 195 108 4 29 199 45 239 8.37e-28 105
Msa0861230 MtrunA17_Chr4g0044671 27.222 180 110 2 29 187 28 207 4.26e-14 68.2
Msa0861230 MtrunA17_Chr4g0034781 26.667 180 111 2 29 187 22 201 1.53e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 53 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATTTGCGATTTCCAATT+TGG 0.147900 5_4:+60486711 Msa0861230:CDS
GGGTAAGGGGTTTGCGATTT+GGG 0.160938 5_4:+60486669 Msa0861230:CDS
TCTCCTCCTCTTCCCCAAAT+TGG 0.218227 5_4:-60486725 None:intergenic
TGGGTAAGGGGTTTGCGATT+TGG 0.259010 5_4:+60486668 Msa0861230:CDS
AGATTTGCGATTTCCAATTT+GGG 0.327058 5_4:+60486712 Msa0861230:CDS
CAAATTGGAAATCGCAAATC+TGG 0.332402 5_4:-60486710 None:intergenic
AGGAATTTGCCGAAAGTATC+AGG 0.335653 5_4:-60488866 None:intergenic
AATCGTGATGTTTCACTCTA+AGG 0.341127 5_4:-60488886 None:intergenic
TAGGAACTACCTGATACTTT+CGG 0.400617 5_4:+60488857 Msa0861230:intron
TCCGAACATCACATTTGGTA+TGG 0.417548 5_4:-60488972 None:intergenic
ATCTACTTCCACCAAGGTAC+TGG 0.428620 5_4:-60488605 None:intergenic
CGATTTCCAATTTGGGGAAG+AGG 0.437138 5_4:+60486719 Msa0861230:CDS
GGGTTTGCGATTTGGGGAAG+AGG 0.446038 5_4:+60486676 Msa0861230:CDS
CCGAACATCACATTTGGTAT+GGG 0.451435 5_4:-60488971 None:intergenic
GAGCAATGGCACTTGCTAGA+TGG 0.455163 5_4:+60488465 Msa0861230:CDS
TGCCGCACTCATGGAATGAT+AGG 0.462626 5_4:-60488676 None:intergenic
TTGTGCTGCCAATGGTATTG+AGG 0.463000 5_4:+60489012 Msa0861230:CDS
TATGTTCCAGAATTTGGGTA+AGG 0.469282 5_4:+60486654 None:intergenic
CCAAATGTGATGTTCGGAAA+AGG 0.475440 5_4:+60488977 Msa0861230:CDS
TAAATATTTGTACGAGCTAC+CGG 0.476243 5_4:+60488443 Msa0861230:CDS
CCCATACCAAATGTGATGTT+CGG 0.477035 5_4:+60488971 Msa0861230:CDS
ACACGATGCTGCCGCACTCA+TGG 0.487735 5_4:-60488685 None:intergenic
TTTGCGATTTGGGGAAGAGG+TGG 0.493792 5_4:+60486679 Msa0861230:CDS
TGTGCTGCCAATGGTATTGA+GGG 0.501205 5_4:+60489013 Msa0861230:CDS
ATTATTGCTTTCCAGTACCT+TGG 0.503165 5_4:+60488594 Msa0861230:CDS
TGTTCCAGAATTTGGGTAAG+GGG 0.521801 5_4:+60486656 None:intergenic
ACGGAAATGATATTGTCATA+AGG 0.522697 5_4:-60488926 None:intergenic
GGTAAGGGGTTTGCGATTTG+GGG 0.534352 5_4:+60486670 Msa0861230:CDS
TCTAGCAAGTGCCATTGCTC+CGG 0.534587 5_4:-60488462 None:intergenic
GATTTGCGATTTCCAATTTG+GGG 0.537951 5_4:+60486713 Msa0861230:CDS
TGATAGGGTGGATAATCAGC+TGG 0.541144 5_4:-60488660 None:intergenic
ATGTTCCAGAATTTGGGTAA+GGG 0.545563 5_4:+60486655 None:intergenic
AGTCAGCCGTTGTTGACAGA+TGG 0.548377 5_4:+60488528 Msa0861230:CDS
ATTGCTTTCCAGTACCTTGG+TGG 0.549152 5_4:+60488597 Msa0861230:CDS
AGCCGTTGTTGACAGATGGT+TGG 0.550734 5_4:+60488532 Msa0861230:CDS
CGAACATCACATTTGGTATG+GGG 0.552019 5_4:-60488970 None:intergenic
TTTCAAGTGCAAGTGCGTCA+TGG 0.567746 5_4:+60489051 Msa0861230:CDS
TTTCCAATTTGGGGAAGAGG+AGG 0.577832 5_4:+60486722 Msa0861230:CDS
GTCTCCGCCCTCAATACCAT+TGG 0.581950 5_4:-60489020 None:intergenic
ATTTGGGGAAGAGGAGGAGA+AGG 0.584196 5_4:+60486728 Msa0861230:CDS
GTCTGTATATTTGAGTCTCA+CGG 0.587084 5_4:-60488945 None:intergenic
TGGCACTTGCTAGATGGTGA+TGG 0.587936 5_4:+60488471 Msa0861230:CDS
ATTTGGGGAAGAGGTGGAGA+AGG 0.588798 5_4:+60486685 Msa0861230:CDS
TATCCAGATAGGAACTTCAA+AGG 0.596572 5_4:-60488715 None:intergenic
ATGTGATGTTCGGAAAAGGT+TGG 0.606400 5_4:+60488981 Msa0861230:CDS
GGCACTTGCTAGATGGTGAT+GGG 0.608333 5_4:+60488472 Msa0861230:CDS
TGTACGAGCTACCGGAGCAA+TGG 0.612121 5_4:+60488451 Msa0861230:CDS
GCCGCACTCATGGAATGATA+GGG 0.629158 5_4:-60488675 None:intergenic
ACCCTATCATTCCATGAGTG+CGG 0.640367 5_4:+60488674 Msa0861230:CDS
GCACTCATGGAATGATAGGG+TGG 0.649652 5_4:-60488672 None:intergenic
TTTGAAATCTACTTCCACCA+AGG 0.681040 5_4:-60488611 None:intergenic
CTCCAACCATCTGTCAACAA+CGG 0.713268 5_4:-60488534 None:intergenic
GCTGCCAATGGTATTGAGGG+CGG 0.739556 5_4:+60489016 Msa0861230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAATCTTTTTTTAGTTA+AGG + chr5_4:60486983-60487002 Msa0861230:intron 10.0%
!!! AATAATCTTTTTTTAGTTAA+GGG + chr5_4:60486984-60487003 Msa0861230:intron 10.0%
!!! AAATAATCTTTTTTTAGTTA+AGG + chr5_4:60486983-60487002 Msa0861230:intron 10.0%
!!! AATAATCTTTTTTTAGTTAA+GGG + chr5_4:60486984-60487003 Msa0861230:intron 10.0%
!!! AAAAAACTTAAATGTTCTTT+TGG + chr5_4:60486802-60486821 Msa0861230:intron 15.0%
!! AAAATTCAAAAAAAACGTTA+GGG - chr5_4:60486904-60486923 None:intergenic 15.0%
!! AAAAATTCAAAAAAAACGTT+AGG - chr5_4:60486905-60486924 None:intergenic 15.0%
!! TAATACCAAAAATATAGTTA+AGG + chr5_4:60487014-60487033 Msa0861230:intron 15.0%
!! AATACCAAAAATATAGTTAA+GGG + chr5_4:60487015-60487034 Msa0861230:intron 15.0%
!!! TAAAATTCAATAATTTGTCT+AGG + chr5_4:60487333-60487352 Msa0861230:intron 15.0%
!!! TAGTTCTTTTTTTTTTTTTG+AGG + chr5_4:60487412-60487431 Msa0861230:intron 15.0%
!! TATATATGCTATGAAAAATA+GGG - chr5_4:60487589-60487608 None:intergenic 15.0%
!! ATATATATGCTATGAAAAAT+AGG - chr5_4:60487590-60487609 None:intergenic 15.0%
!! GTTTATATATGCTATAATAA+AGG + chr5_4:60488797-60488816 Msa0861230:intron 15.0%
!!! CAGATTTTTTTCTTTTTTTT+AGG + chr5_4:60488838-60488857 Msa0861230:intron 15.0%
!!! AAAAAACTTAAATGTTCTTT+TGG + chr5_4:60486802-60486821 Msa0861230:intron 15.0%
!! AAAATTCAAAAAAAACGTTA+GGG - chr5_4:60486904-60486923 None:intergenic 15.0%
!! AAAAATTCAAAAAAAACGTT+AGG - chr5_4:60486905-60486924 None:intergenic 15.0%
!! TAATACCAAAAATATAGTTA+AGG + chr5_4:60487014-60487033 Msa0861230:intron 15.0%
!! AATACCAAAAATATAGTTAA+GGG + chr5_4:60487015-60487034 Msa0861230:intron 15.0%
!!! TAAAATTCAATAATTTGTCT+AGG + chr5_4:60487333-60487352 Msa0861230:intron 15.0%
!!! TAGTTCTTTTTTTTTTTTTG+AGG + chr5_4:60487412-60487431 Msa0861230:intron 15.0%
!! TATATATGCTATGAAAAATA+GGG - chr5_4:60487589-60487608 None:intergenic 15.0%
!! ATATATATGCTATGAAAAAT+AGG - chr5_4:60487590-60487609 None:intergenic 15.0%
!! GTTTATATATGCTATAATAA+AGG + chr5_4:60488797-60488816 Msa0861230:intron 15.0%
!!! CAGATTTTTTTCTTTTTTTT+AGG + chr5_4:60488838-60488857 Msa0861230:intron 15.0%
!! GATACCAAATAAATACTTAA+GGG - chr5_4:60486829-60486848 None:intergenic 20.0%
!!! TTTTGAATTTATTTAACGGA+AGG + chr5_4:60486923-60486942 Msa0861230:intron 20.0%
!! TTTGAATTTATTTAACGGAA+GGG + chr5_4:60486924-60486943 Msa0861230:intron 20.0%
!!! CTATATTTTTGGTATTACTT+TGG - chr5_4:60487011-60487030 None:intergenic 20.0%
!! TAATTACACTCATTCAATTT+AGG - chr5_4:60487059-60487078 None:intergenic 20.0%
!!! TGATAATCAAAGCTATATTT+TGG + chr5_4:60487139-60487158 Msa0861230:intron 20.0%
!!! ATATTTTGAAGTTTGTGAAA+AGG + chr5_4:60487222-60487241 Msa0861230:intron 20.0%
!!! GACAAATTATTGAATTTTAG+TGG - chr5_4:60487332-60487351 None:intergenic 20.0%
!! ATTCTAGTCATATAAATCAT+TGG + chr5_4:60487680-60487699 Msa0861230:intron 20.0%
!! TTCTAGTCATATAAATCATT+GGG + chr5_4:60487681-60487700 Msa0861230:intron 20.0%
!!! GCTTTTATAATAAAGGATAA+GGG - chr5_4:60487726-60487745 None:intergenic 20.0%
!!! AGCTTTTATAATAAAGGATA+AGG - chr5_4:60487727-60487746 None:intergenic 20.0%
!!! AAGTCTAGCTTTTATAATAA+AGG - chr5_4:60487733-60487752 None:intergenic 20.0%
!! ATATCAAATGCAATTAAAGT+CGG + chr5_4:60487941-60487960 Msa0861230:intron 20.0%
!! TTAACTTTAGTGGTAAAATT+TGG - chr5_4:60488188-60488207 None:intergenic 20.0%
!! TTTCTATTTAAATACGATGA+AGG + chr5_4:60488269-60488288 Msa0861230:intron 20.0%
!! TTCTATTTAAATACGATGAA+GGG + chr5_4:60488270-60488289 Msa0861230:intron 20.0%
!! TTAGACAGTGTATTAAAAAA+AGG - chr5_4:60488385-60488404 None:intergenic 20.0%
!! AAAAAACAATAAACAACCTT+CGG - chr5_4:60488757-60488776 None:intergenic 20.0%
!! GATACCAAATAAATACTTAA+GGG - chr5_4:60486829-60486848 None:intergenic 20.0%
!!! TTTTGAATTTATTTAACGGA+AGG + chr5_4:60486923-60486942 Msa0861230:intron 20.0%
!! TTTGAATTTATTTAACGGAA+GGG + chr5_4:60486924-60486943 Msa0861230:intron 20.0%
!!! CTATATTTTTGGTATTACTT+TGG - chr5_4:60487011-60487030 None:intergenic 20.0%
!! TAATTACACTCATTCAATTT+AGG - chr5_4:60487059-60487078 None:intergenic 20.0%
!!! TGATAATCAAAGCTATATTT+TGG + chr5_4:60487139-60487158 Msa0861230:intron 20.0%
!!! ATATTTTGAAGTTTGTGAAA+AGG + chr5_4:60487222-60487241 Msa0861230:intron 20.0%
!!! GACAAATTATTGAATTTTAG+TGG - chr5_4:60487332-60487351 None:intergenic 20.0%
!! ATTCTAGTCATATAAATCAT+TGG + chr5_4:60487680-60487699 Msa0861230:intron 20.0%
!! TTCTAGTCATATAAATCATT+GGG + chr5_4:60487681-60487700 Msa0861230:intron 20.0%
!!! GCTTTTATAATAAAGGATAA+GGG - chr5_4:60487726-60487745 None:intergenic 20.0%
!!! AGCTTTTATAATAAAGGATA+AGG - chr5_4:60487727-60487746 None:intergenic 20.0%
!!! AAGTCTAGCTTTTATAATAA+AGG - chr5_4:60487733-60487752 None:intergenic 20.0%
!! ATATCAAATGCAATTAAAGT+CGG + chr5_4:60487941-60487960 Msa0861230:intron 20.0%
!! TTAACTTTAGTGGTAAAATT+TGG - chr5_4:60488188-60488207 None:intergenic 20.0%
!! TTTCTATTTAAATACGATGA+AGG + chr5_4:60488269-60488288 Msa0861230:intron 20.0%
!! TTCTATTTAAATACGATGAA+GGG + chr5_4:60488270-60488289 Msa0861230:intron 20.0%
!! TTAGACAGTGTATTAAAAAA+AGG - chr5_4:60488385-60488404 None:intergenic 20.0%
!! AAAAAACAATAAACAACCTT+CGG - chr5_4:60488757-60488776 None:intergenic 20.0%
! CGATACCAAATAAATACTTA+AGG - chr5_4:60486830-60486849 None:intergenic 25.0%
!! GTATTTATTTGGTATCGTTT+TGG + chr5_4:60486833-60486852 Msa0861230:intron 25.0%
! TTGAATGAGTGTAATTATAG+AGG + chr5_4:60487062-60487081 Msa0861230:intron 25.0%
!! AGCAAATATTAGTCTCATTA+GGG - chr5_4:60487522-60487541 None:intergenic 25.0%
! TAATATTTGCTCAAGTACTT+CGG + chr5_4:60487531-60487550 Msa0861230:intron 25.0%
! TCATATAAATCATTGGGAAT+AGG + chr5_4:60487687-60487706 Msa0861230:intron 25.0%
! TTAGTCATTAGTACATGTTT+AGG - chr5_4:60487818-60487837 None:intergenic 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr5_4:60487976-60487995 None:intergenic 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr5_4:60487977-60487996 None:intergenic 25.0%
!! ATGTGCATGAAAATAACTTT+TGG + chr5_4:60488309-60488328 Msa0861230:intron 25.0%
!! TTTTGATGCTATTCATTTAG+AGG + chr5_4:60488775-60488794 Msa0861230:intron 25.0%
! CGATACCAAATAAATACTTA+AGG - chr5_4:60486830-60486849 None:intergenic 25.0%
!! GTATTTATTTGGTATCGTTT+TGG + chr5_4:60486833-60486852 Msa0861230:intron 25.0%
! TTGAATGAGTGTAATTATAG+AGG + chr5_4:60487062-60487081 Msa0861230:intron 25.0%
!! AGCAAATATTAGTCTCATTA+GGG - chr5_4:60487522-60487541 None:intergenic 25.0%
! TAATATTTGCTCAAGTACTT+CGG + chr5_4:60487531-60487550 Msa0861230:intron 25.0%
! TCATATAAATCATTGGGAAT+AGG + chr5_4:60487687-60487706 Msa0861230:intron 25.0%
! TTAGTCATTAGTACATGTTT+AGG - chr5_4:60487818-60487837 None:intergenic 25.0%
! TTTGATTAGCAATTAGTGTA+GGG - chr5_4:60487976-60487995 None:intergenic 25.0%
!!! TTTTGATTAGCAATTAGTGT+AGG - chr5_4:60487977-60487996 None:intergenic 25.0%
!! ATGTGCATGAAAATAACTTT+TGG + chr5_4:60488309-60488328 Msa0861230:intron 25.0%
!! TTTTGATGCTATTCATTTAG+AGG + chr5_4:60488775-60488794 Msa0861230:intron 25.0%
AGATTTGCGATTTCCAATTT+GGG + chr5_4:60486712-60486731 Msa0861230:CDS 30.0%
TGGTCCCTTAAGTATTTATT+TGG + chr5_4:60486822-60486841 Msa0861230:intron 30.0%
! TGGTCCCTTAACTATATTTT+TGG - chr5_4:60487022-60487041 None:intergenic 30.0%
! TTTAGGCTTAAATGCGTTTT+TGG - chr5_4:60487042-60487061 None:intergenic 30.0%
ATTTCTCTTTCCTCTTACTT+CGG - chr5_4:60487113-60487132 None:intergenic 30.0%
!!! AGCTATATTTTGGTGCAAAA+TGG + chr5_4:60487149-60487168 Msa0861230:intron 30.0%
AGAAAATCTAGAGAGTCATA+GGG - chr5_4:60487474-60487493 None:intergenic 30.0%
! AATATTAGTCTCATTAGGGA+GGG - chr5_4:60487518-60487537 None:intergenic 30.0%
! AAATATTAGTCTCATTAGGG+AGG - chr5_4:60487519-60487538 None:intergenic 30.0%
! GAGCAAATATTAGTCTCATT+AGG - chr5_4:60487523-60487542 None:intergenic 30.0%
TATGCTATGAAAAATAGGGA+TGG - chr5_4:60487585-60487604 None:intergenic 30.0%
AATCATTGGGAATAGGAAAA+TGG + chr5_4:60487694-60487713 Msa0861230:intron 30.0%
! TTATAAAAGCTAGACTTGCT+TGG + chr5_4:60487736-60487755 Msa0861230:intron 30.0%
TCATTAGTACATGTTTAGGA+GGG - chr5_4:60487814-60487833 None:intergenic 30.0%
!! ATTGTTAGGCTTTGAATCAA+CGG - chr5_4:60487885-60487904 None:intergenic 30.0%
!! TATTATGAGAGAGCATTGTT+AGG - chr5_4:60487899-60487918 None:intergenic 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr5_4:60487975-60487994 None:intergenic 30.0%
!!! GTACGAAGAACACTTTTTTA+AGG - chr5_4:60488069-60488088 None:intergenic 30.0%
ATCTTCCTATCACTCTATTT+CGG - chr5_4:60488141-60488160 None:intergenic 30.0%
ATAGGAAGATATGCGTTTAA+AGG + chr5_4:60488151-60488170 Msa0861230:intron 30.0%
! GAACGAACATTTAACTTTAG+TGG - chr5_4:60488198-60488217 None:intergenic 30.0%
! GCATGAAAATAACTTTTGGT+TGG + chr5_4:60488313-60488332 Msa0861230:intron 30.0%
TAATACACTGTCTAACTTCT+TGG + chr5_4:60488390-60488409 Msa0861230:intron 30.0%
TAAATATTTGTACGAGCTAC+CGG + chr5_4:60488443-60488462 Msa0861230:CDS 30.0%
ACGGAAATGATATTGTCATA+AGG - chr5_4:60488929-60488948 None:intergenic 30.0%
AGATTTGCGATTTCCAATTT+GGG + chr5_4:60486712-60486731 Msa0861230:CDS 30.0%
TGGTCCCTTAAGTATTTATT+TGG + chr5_4:60486822-60486841 Msa0861230:intron 30.0%
! TGGTCCCTTAACTATATTTT+TGG - chr5_4:60487022-60487041 None:intergenic 30.0%
! TTTAGGCTTAAATGCGTTTT+TGG - chr5_4:60487042-60487061 None:intergenic 30.0%
ATTTCTCTTTCCTCTTACTT+CGG - chr5_4:60487113-60487132 None:intergenic 30.0%
!!! AGCTATATTTTGGTGCAAAA+TGG + chr5_4:60487149-60487168 Msa0861230:intron 30.0%
AGAAAATCTAGAGAGTCATA+GGG - chr5_4:60487474-60487493 None:intergenic 30.0%
! AATATTAGTCTCATTAGGGA+GGG - chr5_4:60487518-60487537 None:intergenic 30.0%
! AAATATTAGTCTCATTAGGG+AGG - chr5_4:60487519-60487538 None:intergenic 30.0%
! GAGCAAATATTAGTCTCATT+AGG - chr5_4:60487523-60487542 None:intergenic 30.0%
TATGCTATGAAAAATAGGGA+TGG - chr5_4:60487585-60487604 None:intergenic 30.0%
AATCATTGGGAATAGGAAAA+TGG + chr5_4:60487694-60487713 Msa0861230:intron 30.0%
! TTATAAAAGCTAGACTTGCT+TGG + chr5_4:60487736-60487755 Msa0861230:intron 30.0%
TCATTAGTACATGTTTAGGA+GGG - chr5_4:60487814-60487833 None:intergenic 30.0%
!! ATTGTTAGGCTTTGAATCAA+CGG - chr5_4:60487885-60487904 None:intergenic 30.0%
!! TATTATGAGAGAGCATTGTT+AGG - chr5_4:60487899-60487918 None:intergenic 30.0%
TTGATTAGCAATTAGTGTAG+GGG - chr5_4:60487975-60487994 None:intergenic 30.0%
!!! GTACGAAGAACACTTTTTTA+AGG - chr5_4:60488069-60488088 None:intergenic 30.0%
ATCTTCCTATCACTCTATTT+CGG - chr5_4:60488141-60488160 None:intergenic 30.0%
ATAGGAAGATATGCGTTTAA+AGG + chr5_4:60488151-60488170 Msa0861230:intron 30.0%
! GAACGAACATTTAACTTTAG+TGG - chr5_4:60488198-60488217 None:intergenic 30.0%
! GCATGAAAATAACTTTTGGT+TGG + chr5_4:60488313-60488332 Msa0861230:intron 30.0%
TAATACACTGTCTAACTTCT+TGG + chr5_4:60488390-60488409 Msa0861230:intron 30.0%
TAAATATTTGTACGAGCTAC+CGG + chr5_4:60488443-60488462 Msa0861230:CDS 30.0%
ACGGAAATGATATTGTCATA+AGG - chr5_4:60488929-60488948 None:intergenic 30.0%
CAAATTGGAAATCGCAAATC+TGG - chr5_4:60486713-60486732 None:intergenic 35.0%
CAGATTTGCGATTTCCAATT+TGG + chr5_4:60486711-60486730 Msa0861230:CDS 35.0%
GATTTGCGATTTCCAATTTG+GGG + chr5_4:60486713-60486732 Msa0861230:CDS 35.0%
! TTTATCTCCGTTACCTGTTT+TGG - chr5_4:60486951-60486970 None:intergenic 35.0%
GAGAAAATCTAGAGAGTCAT+AGG - chr5_4:60487475-60487494 None:intergenic 35.0%
! AACTTAAAGCTTTGGTCACT+TGG + chr5_4:60487558-60487577 Msa0861230:intron 35.0%
TTTAGGAGGGAAAAATGCTA+GGG - chr5_4:60487801-60487820 None:intergenic 35.0%
GTCATTAGTACATGTTTAGG+AGG - chr5_4:60487815-60487834 None:intergenic 35.0%
GTGTGAAAATAGAGGTTGAA+CGG - chr5_4:60487852-60487871 None:intergenic 35.0%
GTGATCAAGTGTGAAAATAG+AGG - chr5_4:60487860-60487879 None:intergenic 35.0%
!! TTGTTAGGCTTTGAATCAAC+GGG - chr5_4:60487884-60487903 None:intergenic 35.0%
TCTCGGATAACACTTTCTAA+GGG - chr5_4:60488013-60488032 None:intergenic 35.0%
ATCTCGGATAACACTTTCTA+AGG - chr5_4:60488014-60488033 None:intergenic 35.0%
ATTATTGCTTTCCAGTACCT+TGG + chr5_4:60488594-60488613 Msa0861230:CDS 35.0%
! TTTGAAATCTACTTCCACCA+AGG - chr5_4:60488614-60488633 None:intergenic 35.0%
TATCCAGATAGGAACTTCAA+AGG - chr5_4:60488718-60488737 None:intergenic 35.0%
TTGAAGTTCCTATCTGGATA+TGG + chr5_4:60488718-60488737 Msa0861230:intron 35.0%
TAGGAACTACCTGATACTTT+CGG + chr5_4:60488857-60488876 Msa0861230:intron 35.0%
AATCGTGATGTTTCACTCTA+AGG - chr5_4:60488889-60488908 None:intergenic 35.0%
GTCTGTATATTTGAGTCTCA+CGG - chr5_4:60488948-60488967 None:intergenic 35.0%
CAAATTGGAAATCGCAAATC+TGG - chr5_4:60486713-60486732 None:intergenic 35.0%
CAGATTTGCGATTTCCAATT+TGG + chr5_4:60486711-60486730 Msa0861230:CDS 35.0%
GATTTGCGATTTCCAATTTG+GGG + chr5_4:60486713-60486732 Msa0861230:CDS 35.0%
! TTTATCTCCGTTACCTGTTT+TGG - chr5_4:60486951-60486970 None:intergenic 35.0%
GAGAAAATCTAGAGAGTCAT+AGG - chr5_4:60487475-60487494 None:intergenic 35.0%
! AACTTAAAGCTTTGGTCACT+TGG + chr5_4:60487558-60487577 Msa0861230:intron 35.0%
TTTAGGAGGGAAAAATGCTA+GGG - chr5_4:60487801-60487820 None:intergenic 35.0%
GTCATTAGTACATGTTTAGG+AGG - chr5_4:60487815-60487834 None:intergenic 35.0%
GTGTGAAAATAGAGGTTGAA+CGG - chr5_4:60487852-60487871 None:intergenic 35.0%
GTGATCAAGTGTGAAAATAG+AGG - chr5_4:60487860-60487879 None:intergenic 35.0%
!! TTGTTAGGCTTTGAATCAAC+GGG - chr5_4:60487884-60487903 None:intergenic 35.0%
TCTCGGATAACACTTTCTAA+GGG - chr5_4:60488013-60488032 None:intergenic 35.0%
ATCTCGGATAACACTTTCTA+AGG - chr5_4:60488014-60488033 None:intergenic 35.0%
ATTATTGCTTTCCAGTACCT+TGG + chr5_4:60488594-60488613 Msa0861230:CDS 35.0%
! TTTGAAATCTACTTCCACCA+AGG - chr5_4:60488614-60488633 None:intergenic 35.0%
TATCCAGATAGGAACTTCAA+AGG - chr5_4:60488718-60488737 None:intergenic 35.0%
TTGAAGTTCCTATCTGGATA+TGG + chr5_4:60488718-60488737 Msa0861230:intron 35.0%
TAGGAACTACCTGATACTTT+CGG + chr5_4:60488857-60488876 Msa0861230:intron 35.0%
AATCGTGATGTTTCACTCTA+AGG - chr5_4:60488889-60488908 None:intergenic 35.0%
GTCTGTATATTTGAGTCTCA+CGG - chr5_4:60488948-60488967 None:intergenic 35.0%
!! ATCGTTTTGGTCCCAAAATC+TGG + chr5_4:60486846-60486865 Msa0861230:intron 40.0%
!! TCGTTTTGGTCCCAAAATCT+GGG + chr5_4:60486847-60486866 Msa0861230:intron 40.0%
! AACACACCAACCCAGATTTT+GGG - chr5_4:60486860-60486879 None:intergenic 40.0%
TTACTTCGGAGAAGATGAAG+GGG - chr5_4:60487099-60487118 None:intergenic 40.0%
CTTACTTCGGAGAAGATGAA+GGG - chr5_4:60487100-60487119 None:intergenic 40.0%
TCTTACTTCGGAGAAGATGA+AGG - chr5_4:60487101-60487120 None:intergenic 40.0%
TTCATCTTCTCCGAAGTAAG+AGG + chr5_4:60487100-60487119 Msa0861230:intron 40.0%
TCGGTTGCAACTTAAAGCTT+TGG + chr5_4:60487550-60487569 Msa0861230:intron 40.0%
TCTGAAGAGAAGAGAAGTGA+AGG - chr5_4:60487623-60487642 None:intergenic 40.0%
GGGCAAAGAATGGTGAATTA+GGG - chr5_4:60487774-60487793 None:intergenic 40.0%
AGGGCAAAGAATGGTGAATT+AGG - chr5_4:60487775-60487794 None:intergenic 40.0%
GGGAAAAATGCTAGGGATTA+GGG - chr5_4:60487794-60487813 None:intergenic 40.0%
AGGGAAAAATGCTAGGGATT+AGG - chr5_4:60487795-60487814 None:intergenic 40.0%
GTTTAGGAGGGAAAAATGCT+AGG - chr5_4:60487802-60487821 None:intergenic 40.0%
GTTATCCGAGATAGAGTGAT+AGG + chr5_4:60488022-60488041 Msa0861230:intron 40.0%
TTCCTCCTATCACTCTATCT+CGG - chr5_4:60488030-60488049 None:intergenic 40.0%
GCTATCCGAAATAGAGTGAT+AGG + chr5_4:60488133-60488152 Msa0861230:intron 40.0%
CACAGTGCATGTAGAAAATC+AGG + chr5_4:60488220-60488239 Msa0861230:intron 40.0%
!! GTACCTTTGAAGTTCCTATC+TGG + chr5_4:60488712-60488731 Msa0861230:intron 40.0%
!! AGGAATTTGCCGAAAGTATC+AGG - chr5_4:60488869-60488888 None:intergenic 40.0%
CGAACATCACATTTGGTATG+GGG - chr5_4:60488973-60488992 None:intergenic 40.0%
CCGAACATCACATTTGGTAT+GGG - chr5_4:60488974-60488993 None:intergenic 40.0%
CCCATACCAAATGTGATGTT+CGG + chr5_4:60488971-60488990 Msa0861230:CDS 40.0%
TCCGAACATCACATTTGGTA+TGG - chr5_4:60488975-60488994 None:intergenic 40.0%
! CCTTTTCCGAACATCACATT+TGG - chr5_4:60488980-60488999 None:intergenic 40.0%
CCAAATGTGATGTTCGGAAA+AGG + chr5_4:60488977-60488996 Msa0861230:CDS 40.0%
ATGTGATGTTCGGAAAAGGT+TGG + chr5_4:60488981-60489000 Msa0861230:CDS 40.0%
!! ATCGTTTTGGTCCCAAAATC+TGG + chr5_4:60486846-60486865 Msa0861230:intron 40.0%
!! TCGTTTTGGTCCCAAAATCT+GGG + chr5_4:60486847-60486866 Msa0861230:intron 40.0%
! AACACACCAACCCAGATTTT+GGG - chr5_4:60486860-60486879 None:intergenic 40.0%
TTACTTCGGAGAAGATGAAG+GGG - chr5_4:60487099-60487118 None:intergenic 40.0%
CTTACTTCGGAGAAGATGAA+GGG - chr5_4:60487100-60487119 None:intergenic 40.0%
TCTTACTTCGGAGAAGATGA+AGG - chr5_4:60487101-60487120 None:intergenic 40.0%
TTCATCTTCTCCGAAGTAAG+AGG + chr5_4:60487100-60487119 Msa0861230:intron 40.0%
TCGGTTGCAACTTAAAGCTT+TGG + chr5_4:60487550-60487569 Msa0861230:intron 40.0%
TCTGAAGAGAAGAGAAGTGA+AGG - chr5_4:60487623-60487642 None:intergenic 40.0%
GGGCAAAGAATGGTGAATTA+GGG - chr5_4:60487774-60487793 None:intergenic 40.0%
AGGGCAAAGAATGGTGAATT+AGG - chr5_4:60487775-60487794 None:intergenic 40.0%
GGGAAAAATGCTAGGGATTA+GGG - chr5_4:60487794-60487813 None:intergenic 40.0%
AGGGAAAAATGCTAGGGATT+AGG - chr5_4:60487795-60487814 None:intergenic 40.0%
GTTTAGGAGGGAAAAATGCT+AGG - chr5_4:60487802-60487821 None:intergenic 40.0%
GTTATCCGAGATAGAGTGAT+AGG + chr5_4:60488022-60488041 Msa0861230:intron 40.0%
TTCCTCCTATCACTCTATCT+CGG - chr5_4:60488030-60488049 None:intergenic 40.0%
GCTATCCGAAATAGAGTGAT+AGG + chr5_4:60488133-60488152 Msa0861230:intron 40.0%
CACAGTGCATGTAGAAAATC+AGG + chr5_4:60488220-60488239 Msa0861230:intron 40.0%
!! GTACCTTTGAAGTTCCTATC+TGG + chr5_4:60488712-60488731 Msa0861230:intron 40.0%
!! AGGAATTTGCCGAAAGTATC+AGG - chr5_4:60488869-60488888 None:intergenic 40.0%
CGAACATCACATTTGGTATG+GGG - chr5_4:60488973-60488992 None:intergenic 40.0%
CCGAACATCACATTTGGTAT+GGG - chr5_4:60488974-60488993 None:intergenic 40.0%
CCCATACCAAATGTGATGTT+CGG + chr5_4:60488971-60488990 Msa0861230:CDS 40.0%
TCCGAACATCACATTTGGTA+TGG - chr5_4:60488975-60488994 None:intergenic 40.0%
! CCTTTTCCGAACATCACATT+TGG - chr5_4:60488980-60488999 None:intergenic 40.0%
CCAAATGTGATGTTCGGAAA+AGG + chr5_4:60488977-60488996 Msa0861230:CDS 40.0%
ATGTGATGTTCGGAAAAGGT+TGG + chr5_4:60488981-60489000 Msa0861230:CDS 40.0%
CGATTTCCAATTTGGGGAAG+AGG + chr5_4:60486719-60486738 Msa0861230:CDS 45.0%
TTTCCAATTTGGGGAAGAGG+AGG + chr5_4:60486722-60486741 Msa0861230:CDS 45.0%
TTTGGTCCCAAAATCTGGGT+TGG + chr5_4:60486851-60486870 Msa0861230:intron 45.0%
! CAACACACCAACCCAGATTT+TGG - chr5_4:60486861-60486880 None:intergenic 45.0%
TTAACGGAAGGGACCAAAAC+AGG + chr5_4:60486935-60486954 Msa0861230:intron 45.0%
GAAGGGACCAAAACAGGTAA+CGG + chr5_4:60486941-60486960 Msa0861230:intron 45.0%
ATCTAGAGAGTCATAGGGTG+TGG - chr5_4:60487469-60487488 None:intergenic 45.0%
GGTCAAGTGAACAAAGCTTG+TGG - chr5_4:60487497-60487516 None:intergenic 45.0%
CTAGGGATTAGGGCAAAGAA+TGG - chr5_4:60487784-60487803 None:intergenic 45.0%
ATCCGAGATAGAGTGATAGG+AGG + chr5_4:60488025-60488044 Msa0861230:intron 45.0%
CTCCAACCATCTGTCAACAA+CGG - chr5_4:60488537-60488556 None:intergenic 45.0%
ATTGCTTTCCAGTACCTTGG+TGG + chr5_4:60488597-60488616 Msa0861230:CDS 45.0%
ATCTACTTCCACCAAGGTAC+TGG - chr5_4:60488608-60488627 None:intergenic 45.0%
TGATAGGGTGGATAATCAGC+TGG - chr5_4:60488663-60488682 None:intergenic 45.0%
ACCCTATCATTCCATGAGTG+CGG + chr5_4:60488674-60488693 Msa0861230:CDS 45.0%
TCGTCGATCCATATCCAGAT+AGG - chr5_4:60488729-60488748 None:intergenic 45.0%
! ACGAGTTTTTGTGCTGCCAA+TGG + chr5_4:60489004-60489023 Msa0861230:CDS 45.0%
TTGTGCTGCCAATGGTATTG+AGG + chr5_4:60489012-60489031 Msa0861230:CDS 45.0%
! TGTGCTGCCAATGGTATTGA+GGG + chr5_4:60489013-60489032 Msa0861230:CDS 45.0%
! TTTCAAGTGCAAGTGCGTCA+TGG + chr5_4:60489051-60489070 Msa0861230:CDS 45.0%
CGATTTCCAATTTGGGGAAG+AGG + chr5_4:60486719-60486738 Msa0861230:CDS 45.0%
TTTCCAATTTGGGGAAGAGG+AGG + chr5_4:60486722-60486741 Msa0861230:CDS 45.0%
TTTGGTCCCAAAATCTGGGT+TGG + chr5_4:60486851-60486870 Msa0861230:intron 45.0%
! CAACACACCAACCCAGATTT+TGG - chr5_4:60486861-60486880 None:intergenic 45.0%
TTAACGGAAGGGACCAAAAC+AGG + chr5_4:60486935-60486954 Msa0861230:intron 45.0%
GAAGGGACCAAAACAGGTAA+CGG + chr5_4:60486941-60486960 Msa0861230:intron 45.0%
ATCTAGAGAGTCATAGGGTG+TGG - chr5_4:60487469-60487488 None:intergenic 45.0%
GGTCAAGTGAACAAAGCTTG+TGG - chr5_4:60487497-60487516 None:intergenic 45.0%
CTAGGGATTAGGGCAAAGAA+TGG - chr5_4:60487784-60487803 None:intergenic 45.0%
ATCCGAGATAGAGTGATAGG+AGG + chr5_4:60488025-60488044 Msa0861230:intron 45.0%
CTCCAACCATCTGTCAACAA+CGG - chr5_4:60488537-60488556 None:intergenic 45.0%
ATTGCTTTCCAGTACCTTGG+TGG + chr5_4:60488597-60488616 Msa0861230:CDS 45.0%
ATCTACTTCCACCAAGGTAC+TGG - chr5_4:60488608-60488627 None:intergenic 45.0%
TGATAGGGTGGATAATCAGC+TGG - chr5_4:60488663-60488682 None:intergenic 45.0%
ACCCTATCATTCCATGAGTG+CGG + chr5_4:60488674-60488693 Msa0861230:CDS 45.0%
TCGTCGATCCATATCCAGAT+AGG - chr5_4:60488729-60488748 None:intergenic 45.0%
! ACGAGTTTTTGTGCTGCCAA+TGG + chr5_4:60489004-60489023 Msa0861230:CDS 45.0%
TTGTGCTGCCAATGGTATTG+AGG + chr5_4:60489012-60489031 Msa0861230:CDS 45.0%
! TGTGCTGCCAATGGTATTGA+GGG + chr5_4:60489013-60489032 Msa0861230:CDS 45.0%
! TTTCAAGTGCAAGTGCGTCA+TGG + chr5_4:60489051-60489070 Msa0861230:CDS 45.0%
!!! ATTTTTTTGAATTTATTTAA+CGG + chr5_4:60486919-60486938 Msa0861230:intron 5.0%
!!! ATTTTTTTGAATTTATTTAA+CGG + chr5_4:60486919-60486938 Msa0861230:intron 5.0%
TGGGTAAGGGGTTTGCGATT+TGG + chr5_4:60486668-60486687 Msa0861230:CDS 50.0%
GGGTAAGGGGTTTGCGATTT+GGG + chr5_4:60486669-60486688 Msa0861230:CDS 50.0%
GGTAAGGGGTTTGCGATTTG+GGG + chr5_4:60486670-60486689 Msa0861230:CDS 50.0%
! TTTGCGATTTGGGGAAGAGG+TGG + chr5_4:60486679-60486698 Msa0861230:CDS 50.0%
ATTTGGGGAAGAGGTGGAGA+AGG + chr5_4:60486685-60486704 Msa0861230:CDS 50.0%
TCTCCTCCTCTTCCCCAAAT+TGG - chr5_4:60486728-60486747 None:intergenic 50.0%
ATTTGGGGAAGAGGAGGAGA+AGG + chr5_4:60486728-60486747 Msa0861230:CDS 50.0%
! TCTAGCAAGTGCCATTGCTC+CGG - chr5_4:60488465-60488484 None:intergenic 50.0%
! GAGCAATGGCACTTGCTAGA+TGG + chr5_4:60488465-60488484 Msa0861230:CDS 50.0%
! TGGCACTTGCTAGATGGTGA+TGG + chr5_4:60488471-60488490 Msa0861230:CDS 50.0%
! GGCACTTGCTAGATGGTGAT+GGG + chr5_4:60488472-60488491 Msa0861230:CDS 50.0%
AGTCAGCCGTTGTTGACAGA+TGG + chr5_4:60488528-60488547 Msa0861230:CDS 50.0%
AGCCGTTGTTGACAGATGGT+TGG + chr5_4:60488532-60488551 Msa0861230:CDS 50.0%
GCACTCATGGAATGATAGGG+TGG - chr5_4:60488675-60488694 None:intergenic 50.0%
GCCGCACTCATGGAATGATA+GGG - chr5_4:60488678-60488697 None:intergenic 50.0%
TGCCGCACTCATGGAATGAT+AGG - chr5_4:60488679-60488698 None:intergenic 50.0%
TGGATCGACGAAATCACCGA+AGG + chr5_4:60488738-60488757 Msa0861230:intron 50.0%
TCGCAAACCCCTTACCCAAA+TGG - chr5_4:60486666-60486685 None:intergenic 50.0%
TGGGTAAGGGGTTTGCGATT+TGG + chr5_4:60486668-60486687 Msa0861230:CDS 50.0%
GGGTAAGGGGTTTGCGATTT+GGG + chr5_4:60486669-60486688 Msa0861230:CDS 50.0%
GGTAAGGGGTTTGCGATTTG+GGG + chr5_4:60486670-60486689 Msa0861230:CDS 50.0%
! TTTGCGATTTGGGGAAGAGG+TGG + chr5_4:60486679-60486698 Msa0861230:CDS 50.0%
ATTTGGGGAAGAGGTGGAGA+AGG + chr5_4:60486685-60486704 Msa0861230:CDS 50.0%
TCTCCTCCTCTTCCCCAAAT+TGG - chr5_4:60486728-60486747 None:intergenic 50.0%
ATTTGGGGAAGAGGAGGAGA+AGG + chr5_4:60486728-60486747 Msa0861230:CDS 50.0%
! TCTAGCAAGTGCCATTGCTC+CGG - chr5_4:60488465-60488484 None:intergenic 50.0%
! GAGCAATGGCACTTGCTAGA+TGG + chr5_4:60488465-60488484 Msa0861230:CDS 50.0%
! TGGCACTTGCTAGATGGTGA+TGG + chr5_4:60488471-60488490 Msa0861230:CDS 50.0%
! GGCACTTGCTAGATGGTGAT+GGG + chr5_4:60488472-60488491 Msa0861230:CDS 50.0%
AGTCAGCCGTTGTTGACAGA+TGG + chr5_4:60488528-60488547 Msa0861230:CDS 50.0%
AGCCGTTGTTGACAGATGGT+TGG + chr5_4:60488532-60488551 Msa0861230:CDS 50.0%
GCACTCATGGAATGATAGGG+TGG - chr5_4:60488675-60488694 None:intergenic 50.0%
GCCGCACTCATGGAATGATA+GGG - chr5_4:60488678-60488697 None:intergenic 50.0%
TGCCGCACTCATGGAATGAT+AGG - chr5_4:60488679-60488698 None:intergenic 50.0%
TGGATCGACGAAATCACCGA+AGG + chr5_4:60488738-60488757 Msa0861230:intron 50.0%
! GGGTTTGCGATTTGGGGAAG+AGG + chr5_4:60486676-60486695 Msa0861230:CDS 55.0%
TGTACGAGCTACCGGAGCAA+TGG + chr5_4:60488451-60488470 Msa0861230:CDS 55.0%
! GCTGCCAATGGTATTGAGGG+CGG + chr5_4:60489016-60489035 Msa0861230:CDS 55.0%
GTCTCCGCCCTCAATACCAT+TGG - chr5_4:60489023-60489042 None:intergenic 55.0%
! GGGTTTGCGATTTGGGGAAG+AGG + chr5_4:60486676-60486695 Msa0861230:CDS 55.0%
TGTACGAGCTACCGGAGCAA+TGG + chr5_4:60488451-60488470 Msa0861230:CDS 55.0%
! GCTGCCAATGGTATTGAGGG+CGG + chr5_4:60489016-60489035 Msa0861230:CDS 55.0%
GTCTCCGCCCTCAATACCAT+TGG - chr5_4:60489023-60489042 None:intergenic 55.0%
ACACGATGCTGCCGCACTCA+TGG - chr5_4:60488688-60488707 None:intergenic 60.0%
ACACGATGCTGCCGCACTCA+TGG - chr5_4:60488688-60488707 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60486665 60489096 60486665 ID=Msa0861230;Name=Msa0861230
chr5_4 mRNA 60486665 60489096 60486665 ID=Msa0861230-mRNA-1;Parent=Msa0861230;Name=Msa0861230-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.75|0.66|0|4|0|200
chr5_4 exon 60486665 60486749 60486665 ID=Msa0861230-mRNA-1:exon:18673;Parent=Msa0861230-mRNA-1
chr5_4 exon 60488421 60488562 60488421 ID=Msa0861230-mRNA-1:exon:18674;Parent=Msa0861230-mRNA-1
chr5_4 exon 60488587 60488722 60488587 ID=Msa0861230-mRNA-1:exon:18675;Parent=Msa0861230-mRNA-1
chr5_4 exon 60488860 60489096 60488860 ID=Msa0861230-mRNA-1:exon:18676;Parent=Msa0861230-mRNA-1
chr5_4 CDS 60486665 60486749 60486665 ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1
chr5_4 CDS 60488421 60488562 60488421 ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1
chr5_4 CDS 60488587 60488722 60488587 ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1
chr5_4 CDS 60488860 60489096 60488860 ID=Msa0861230-mRNA-1:cds;Parent=Msa0861230-mRNA-1
Gene Sequence

>Msa0861230

ATTTGGGTAAGGGGTTTGCGATTTGGGGAAGAGGTGGAGAAGGTTCCAGATTTGCGATTTCCAATTTGGGGAAGAGGAGGAGAAGAACTACAACAATTATTCGTTGCTAAATATTTGTACGAGCTACCGGAGCAATGGCACTTGCTAGATGGTGATGGGAATACTCATAACGTCATGTTCAACAAATCAGTTAGTCAGCCGTTGTTGACAGATGGTTGGAGTGCATTAAGTAAGATTATTGCTTTCCAGTACCTTGGTGGAAGTAGATTTCAAATCTTTGTTTTTGCTCATAACATTGCTCCAGCTGATTATCCACCCTATCATTCCATGAGTGCGGCAGCATCGTGTTATTGTACCTTTGAAGAACTACCTGATACTTTCGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCAGACCTTATGACAATATCATTTCCGTGAGACTCAAATATACAGACGACCCCATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTATTGAGGGCGGAGACGTGTTGATTTTCAAGTGCAAGTGCGTCATGGACAAAAAATATGTTATCGTATCC

Protein sequence

>Msa0861230

IWVRGLRFGEEVEKVPDLRFPIWGRGGEELQQLFVAKYLYELPEQWHLLDGDGNTHNVMFNKSVSQPLLTDGWSALSKIIAFQYLGGSRFQIFVFAHNIAPADYPPYHSMSAAASCYCTFEELPDTFGKFLRVKHHDYVMLCRPYDNIISVRLKYTDDPIPNVMFGKGWTSFCAANGIEGGDVLIFKCKCVMDKKYVIVS