AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861300 MtrunA17_Chr5g0441141 68.041 291 32 10 7 261 10 275 1.14e-116 335
Msa0861300 MtrunA17_Chr5g0440761 67.500 280 36 8 7 256 10 264 2.52e-114 329
Msa0861300 MtrunA17_Chr5g0440781 81.356 177 26 3 7 176 10 186 3.23e-96 280
Msa0861300 MtrunA17_Chr5g0441131 69.427 157 42 3 1 151 1 157 7.92e-69 210
Msa0861300 MtrunA17_Chr5g0425591 87.952 83 10 0 1 83 1 83 1.18e-47 153
Msa0861300 MtrunA17_Chr4g0072451 53.247 154 21 5 4 149 2 112 2.23e-38 131
Msa0861300 MtrunA17_Chr1g0192411 48.980 147 69 3 1 141 1 147 2.32e-38 138
Msa0861300 MtrunA17_Chr1g0154031 40.588 170 86 3 10 164 77 246 2.94e-37 135
Msa0861300 MtrunA17_Chr1g0151941 39.888 178 96 4 9 175 12 189 8.56e-36 128
Msa0861300 MtrunA17_Chr3g0099131 50.427 117 56 1 7 121 39 155 2.12e-34 129
Msa0861300 MtrunA17_Chr3g0103281 48.718 117 57 2 8 121 11 127 1.21e-33 124
Msa0861300 MtrunA17_Chr8g0354661 37.234 188 100 3 10 188 38 216 2.23e-33 127
Msa0861300 MtrunA17_Chr4g0037141 47.287 129 63 3 7 132 10 136 2.49e-33 122
Msa0861300 MtrunA17_Chr3g0080861 38.750 160 90 3 10 161 38 197 3.04e-33 126
Msa0861300 MtrunA17_Chr2g0322521 50.847 118 56 1 10 125 30 147 3.65e-33 124
Msa0861300 MtrunA17_Chr5g0410961 49.167 120 58 2 9 125 12 131 5.15e-33 123
Msa0861300 MtrunA17_Chr4g0022881 46.154 117 61 1 9 123 12 128 3.07e-32 118
Msa0861300 MtrunA17_Chr1g0167691 51.961 102 47 1 10 109 13 114 3.20e-32 119
Msa0861300 MtrunA17_Chr5g0395281 45.255 137 70 3 3 134 6 142 4.01e-32 119
Msa0861300 MtrunA17_Chr2g0309911 49.138 116 56 2 5 117 7 122 8.11e-32 119
Msa0861300 MtrunA17_Chr3g0131121 50.893 112 52 2 9 117 12 123 8.94e-32 118
Msa0861300 MtrunA17_Chr8g0385321 51.786 112 51 2 9 117 12 123 9.26e-32 119
Msa0861300 MtrunA17_Chr2g0323411 50.000 112 53 2 10 118 13 124 2.07e-31 118
Msa0861300 MtrunA17_Chr2g0281071 50.450 111 52 2 10 117 14 124 3.44e-31 118
Msa0861300 MtrunA17_Chr4g0048511 49.550 111 53 2 10 117 14 124 3.49e-31 118
Msa0861300 MtrunA17_Chr4g0039971 48.696 115 56 2 10 121 14 128 3.64e-31 118
Msa0861300 MtrunA17_Chr3g0115821 46.218 119 61 2 10 125 13 131 5.42e-31 117
Msa0861300 MtrunA17_Chr6g0452271 46.610 118 60 2 7 121 10 127 5.43e-31 117
Msa0861300 MtrunA17_Chr7g0274581 49.057 106 51 2 10 112 13 118 6.41e-31 114
Msa0861300 MtrunA17_Chr1g0152011 53.774 106 46 2 7 109 10 115 7.53e-31 117
Msa0861300 MtrunA17_Chr1g0187761 50.000 102 49 1 10 109 13 114 1.15e-30 114
Msa0861300 MtrunA17_Chr1g0167661 49.107 112 53 2 10 117 13 124 1.54e-30 114
Msa0861300 MtrunA17_Chr7g0270891 43.537 147 71 4 10 144 13 159 1.65e-30 116
Msa0861300 MtrunA17_Chr4g0058631 41.844 141 79 2 10 147 13 153 1.88e-30 116
Msa0861300 MtrunA17_Chr2g0327351 53.922 102 44 2 7 105 10 111 2.01e-30 115
Msa0861300 MtrunA17_Chr1g0211161 47.154 123 62 2 2 121 6 128 2.59e-30 113
Msa0861300 MtrunA17_Chr7g0228231 46.957 115 59 1 2 114 7 121 2.75e-30 112
Msa0861300 MtrunA17_Chr3g0117091 49.565 115 55 2 10 121 13 127 3.12e-30 115
Msa0861300 MtrunA17_Chr5g0400821 52.830 106 47 2 7 109 10 115 3.40e-30 114
Msa0861300 MtrunA17_Chr1g0203411 41.935 124 70 1 9 130 12 135 3.97e-30 114
Msa0861300 MtrunA17_Chr1g0193801 44.361 133 71 2 10 139 13 145 6.42e-30 115
Msa0861300 MtrunA17_Chr5g0434571 44.526 137 71 3 10 143 49 183 6.98e-30 115
Msa0861300 MtrunA17_Chr4g0032401 41.958 143 75 3 10 144 18 160 7.07e-30 114
Msa0861300 MtrunA17_Chr1g0193371 49.550 111 53 2 10 117 13 123 9.28e-30 114
Msa0861300 MtrunA17_Chr8g0342521 47.059 119 60 2 2 117 5 123 1.04e-29 114
Msa0861300 MtrunA17_Chr3g0110351 45.238 126 66 2 10 132 13 138 1.23e-29 113
Msa0861300 MtrunA17_Chr5g0435101 39.583 144 84 2 8 148 10 153 1.32e-29 110
Msa0861300 MtrunA17_Chr7g0264641 41.447 152 72 4 7 155 10 147 1.35e-29 112
Msa0861300 MtrunA17_Chr4g0022931 38.312 154 80 4 1 147 1 146 1.52e-29 112
Msa0861300 MtrunA17_Chr4g0028311 50.943 106 49 2 7 109 10 115 1.70e-29 113
Msa0861300 MtrunA17_Chr4g0054391 53.465 101 44 2 7 104 10 110 2.01e-29 112
Msa0861300 MtrunA17_Chr3g0135311 50.000 106 50 2 7 109 10 115 2.04e-29 113
Msa0861300 MtrunA17_Chr6g0453471 44.800 125 66 2 10 131 13 137 2.91e-29 113
Msa0861300 MtrunA17_Chr7g0217741 46.087 115 59 2 10 121 13 127 3.16e-29 112
Msa0861300 MtrunA17_Chr8g0342541 47.273 110 56 1 2 109 5 114 3.27e-29 113
Msa0861300 MtrunA17_Chr6g0450101 47.273 110 56 1 2 109 7 116 3.75e-29 109
Msa0861300 MtrunA17_Chr4g0022901 42.754 138 66 4 1 132 1 131 4.02e-29 111
Msa0861300 MtrunA17_Chr2g0323351 49.020 102 50 1 10 109 13 114 7.38e-29 109
Msa0861300 MtrunA17_Chr2g0330041 46.218 119 61 2 2 117 5 123 8.32e-29 112
Msa0861300 MtrunA17_Chr5g0397231 47.170 106 54 1 2 105 5 110 9.06e-29 111
Msa0861300 MtrunA17_Chr8g0349261 48.214 112 54 3 10 117 14 125 1.05e-28 110
Msa0861300 MtrunA17_Chr4g0042671 43.609 133 70 3 10 137 13 145 1.44e-28 112
Msa0861300 MtrunA17_Chr2g0328771 47.934 121 57 3 10 127 21 138 1.49e-28 110
Msa0861300 MtrunA17_Chr8g0387421 45.217 115 60 2 2 113 5 119 1.50e-28 110
Msa0861300 MtrunA17_Chr4g0072751 51.961 102 46 2 7 105 10 111 1.55e-28 111
Msa0861300 MtrunA17_Chr7g0261281 47.059 102 52 1 10 109 13 114 1.97e-28 109
Msa0861300 MtrunA17_Chr4g0068061 49.020 102 50 1 10 109 13 114 2.59e-28 110
Msa0861300 MtrunA17_Chr4g0044421 45.133 113 59 2 8 117 11 123 2.93e-28 106
Msa0861300 MtrunA17_Chr4g0060721 48.113 106 52 2 10 112 14 119 4.31e-28 109
Msa0861300 MtrunA17_Chr8g0343831 46.429 112 57 2 5 113 4 115 4.95e-28 107
Msa0861300 MtrunA17_Chr1g0194951 33.702 181 92 5 10 165 13 190 5.95e-28 110
Msa0861300 MtrunA17_Chr1g0209661 34.857 175 83 4 10 153 28 202 8.95e-28 108
Msa0861300 MtrunA17_Chr7g0217221 47.664 107 53 2 9 112 12 118 1.05e-27 107
Msa0861300 MtrunA17_Chr3g0088461 50.000 102 49 1 10 109 23 124 1.35e-27 108
Msa0861300 MtrunA17_Chr4g0022891 43.396 106 58 1 9 112 12 117 1.44e-27 106
Msa0861300 MtrunA17_Chr7g0271241 52.577 97 44 1 10 104 13 109 1.91e-27 108
Msa0861300 MtrunA17_Chr4g0057031 47.788 113 56 2 9 118 12 124 1.98e-27 106
Msa0861300 MtrunA17_Chr6g0453211 47.475 99 50 1 9 105 12 110 2.20e-27 107
Msa0861300 MtrunA17_Chr7g0228891 46.087 115 59 2 10 121 13 127 3.56e-27 105
Msa0861300 MtrunA17_Chr4g0022911 40.299 134 68 4 10 138 14 140 3.76e-27 106
Msa0861300 MtrunA17_Chr5g0417821 44.628 121 64 2 4 121 2 122 4.36e-27 106
Msa0861300 MtrunA17_Chr3g0092401 45.794 107 56 1 9 113 13 119 4.56e-27 106
Msa0861300 MtrunA17_Chr1g0194301 45.283 106 56 1 10 113 34 139 4.68e-27 105
Msa0861300 MtrunA17_Chr7g0275911 44.660 103 55 1 5 105 8 110 8.45e-27 104
Msa0861300 MtrunA17_Chr6g0487491 33.161 193 110 6 7 187 10 195 8.79e-27 104
Msa0861300 MtrunA17_Chr8g0346561 45.714 105 55 1 11 113 14 118 1.21e-26 105
Msa0861300 MtrunA17_Chr3g0121241 41.667 120 67 2 5 121 38 157 1.26e-26 105
Msa0861300 MtrunA17_Chr8g0342481 45.946 111 57 2 2 109 5 115 2.08e-26 106
Msa0861300 MtrunA17_Chr1g0180391 43.636 110 60 1 2 109 12 121 2.50e-26 102
Msa0861300 MtrunA17_Chr1g0194291 44.860 107 57 1 9 113 21 127 2.79e-26 103
Msa0861300 MtrunA17_Chr4g0013361 41.379 145 78 4 10 148 11 154 2.80e-26 103
Msa0861300 MtrunA17_Chr7g0254411 48.113 106 52 2 10 112 13 118 3.44e-26 104
Msa0861300 MtrunA17_Chr1g0186061 46.667 105 54 1 10 112 21 125 3.64e-26 102
Msa0861300 MtrunA17_Chr4g0055981 45.361 97 51 1 11 105 57 153 3.69e-26 102
Msa0861300 MtrunA17_Chr6g0453751 56.044 91 31 2 10 91 21 111 7.29e-26 98.6
Msa0861300 MtrunA17_Chr7g0269831 53.061 98 44 1 10 105 13 110 9.71e-26 103
Msa0861300 MtrunA17_Chr1g0203441 43.519 108 59 1 10 115 14 121 2.26e-25 101
Msa0861300 MtrunA17_Chr4g0070641 46.392 97 50 1 11 105 14 110 2.31e-25 98.6
Msa0861300 MtrunA17_Chr8g0334881 43.925 107 57 2 9 112 10 116 3.40e-25 101
Msa0861300 MtrunA17_Chr1g0193901 69.697 66 19 1 2 66 4 69 3.68e-25 96.3
Msa0861300 MtrunA17_Chr1g0193891 69.697 66 19 1 2 66 4 69 3.68e-25 96.3
Msa0861300 MtrunA17_Chr1g0193871 69.697 66 19 1 2 66 4 69 3.68e-25 96.3
Msa0861300 MtrunA17_Chr1g0193881 69.697 66 19 1 2 66 4 69 3.68e-25 96.3
Msa0861300 MtrunA17_Chr4g0070611 46.392 97 50 1 11 105 14 110 9.14e-25 100
Msa0861300 MtrunA17_Chr2g0311221 46.078 102 53 1 7 106 12 113 9.44e-25 100
Msa0861300 MtrunA17_Chr3g0099141 55.000 80 36 0 7 86 38 117 1.35e-24 95.9
Msa0861300 MtrunA17_Chr4g0068921 44.860 107 57 1 8 112 23 129 1.45e-24 97.1
Msa0861300 MtrunA17_Chr6g0470971 44.860 107 57 1 10 114 15 121 1.59e-24 99.4
Msa0861300 MtrunA17_Chr1g0168661 42.342 111 59 2 10 118 22 129 1.91e-24 98.6
Msa0861300 MtrunA17_Chr2g0293911 42.609 115 64 1 1 113 16 130 3.11e-24 99.4
Msa0861300 MtrunA17_Chr5g0434931 42.718 103 57 1 9 109 35 137 1.21e-23 96.7
Msa0861300 MtrunA17_Chr8g0360111 41.748 103 58 1 5 105 21 123 1.91e-23 95.9
Msa0861300 MtrunA17_Chr5g0434911 40.541 111 64 1 1 109 13 123 2.20e-23 95.9
Msa0861300 MtrunA17_Chr2g0327821 42.308 104 58 1 8 109 5 108 3.15e-23 94.7
Msa0861300 MtrunA17_Chr7g0220341 30.418 263 159 11 1 244 17 274 4.39e-23 95.1
Msa0861300 MtrunA17_Chr7g0240821 43.878 98 53 1 14 109 6 103 6.82e-23 93.6
Msa0861300 MtrunA17_Chr7g0247131 48.387 93 43 3 41 130 10 100 1.81e-22 93.2
Msa0861300 MtrunA17_Chr4g0008551 47.222 108 49 4 11 115 38 140 1.95e-22 94.7
Msa0861300 MtrunA17_Chr4g0030881 39.669 121 61 3 9 117 7 127 2.75e-22 92.8
Msa0861300 MtrunA17_Chr3g0117511 43.363 113 59 3 11 119 183 294 5.31e-22 94.4
Msa0861300 MtrunA17_Chr3g0133601 44.144 111 59 2 8 116 34 143 1.41e-21 90.1
Msa0861300 MtrunA17_Chr5g0434841 42.157 102 57 1 10 109 21 122 1.54e-21 91.7
Msa0861300 MtrunA17_Chr5g0434831 42.157 102 57 1 10 109 8 109 2.32e-21 88.6
Msa0861300 MtrunA17_Chr7g0228991 40.777 103 59 1 9 109 29 131 2.57e-21 90.5
Msa0861300 MtrunA17_Chr6g0460661 37.168 113 68 2 11 121 16 127 7.25e-21 86.7
Msa0861300 MtrunA17_Chr4g0058991 44.118 102 52 3 11 109 209 308 8.05e-21 91.3
Msa0861300 MtrunA17_Chr5g0429661 43.396 106 55 3 11 113 122 225 2.59e-20 89.0
Msa0861300 MtrunA17_Chr6g0480581 38.462 104 61 2 11 112 4 106 2.74e-20 87.0
Msa0861300 MtrunA17_Chr5g0395221 47.368 76 40 0 3 78 6 81 2.87e-20 82.8
Msa0861300 MtrunA17_Chr5g0401731 47.619 105 51 3 8 109 12 115 4.23e-20 87.8
Msa0861300 MtrunA17_Chr8g0342511 48.052 77 40 0 2 78 5 81 4.84e-20 82.4
Msa0861300 MtrunA17_Chr6g0454921 47.000 100 48 3 8 104 12 109 4.92e-20 85.5
Msa0861300 MtrunA17_Chr2g0323321 50.725 69 34 0 10 78 12 80 6.32e-20 82.4
Msa0861300 MtrunA17_Chr8g0342531 47.561 82 43 0 2 83 5 86 6.68e-20 84.0
Msa0861300 MtrunA17_Chr5g0437321 45.545 101 52 2 7 105 15 114 9.90e-20 86.3
Msa0861300 MtrunA17_Chr4g0042611 49.275 69 35 0 10 78 13 81 2.95e-19 80.1
Msa0861300 MtrunA17_Chr3g0125801 41.379 116 59 4 2 109 4 118 9.39e-19 83.6
Msa0861300 MtrunA17_Chr2g0294811 44.737 76 42 0 3 78 6 81 1.81e-18 79.0
Msa0861300 MtrunA17_Chr8g0342461 48.718 78 39 1 2 78 5 82 2.60e-18 79.0
Msa0861300 MtrunA17_Chr7g0238651 38.679 106 61 2 11 112 7 112 2.99e-18 83.2
Msa0861300 MtrunA17_Chr4g0053431 46.667 105 52 3 8 109 2 105 3.06e-18 82.0
Msa0861300 MtrunA17_Chr8g0342471 48.718 78 39 1 2 78 5 82 6.29e-18 78.2
Msa0861300 MtrunA17_Chr7g0228401 37.209 129 54 3 8 110 252 379 1.05e-17 82.4
Msa0861300 MtrunA17_Chr7g0228531 40.594 101 56 3 11 109 220 318 2.71e-17 80.9
Msa0861300 MtrunA17_Chr3g0139671 40.594 101 57 2 11 109 85 184 3.14e-17 81.3
Msa0861300 MtrunA17_Chr3g0139671 35.354 99 60 2 9 104 31 128 1.68e-11 64.3
Msa0861300 MtrunA17_Chr1g0157731 39.604 101 58 2 11 109 91 190 4.68e-17 80.5
Msa0861300 MtrunA17_Chr5g0397841 43.137 102 55 2 5 104 104 204 5.28e-17 80.1
Msa0861300 MtrunA17_Chr7g0228481 40.000 105 59 3 11 113 220 322 1.46e-16 78.6
Msa0861300 MtrunA17_Chr7g0238631 37.931 116 64 3 11 119 113 227 1.54e-16 79.0
Msa0861300 MtrunA17_Chr5g0417621 37.615 109 62 3 6 109 129 236 1.06e-15 76.3
Msa0861300 MtrunA17_Chr7g0233061 35.652 115 63 4 4 113 173 281 1.62e-15 75.1
Msa0861300 MtrunA17_Chr4g0042501 40.000 105 55 4 11 109 105 207 2.15e-15 75.1
Msa0861300 MtrunA17_Chr1g0177901 28.342 187 113 5 21 189 4 187 3.00e-15 72.4
Msa0861300 MtrunA17_Chr6g0460671 36.283 113 69 2 11 121 99 210 5.58e-15 73.6
Msa0861300 MtrunA17_Chr7g0254261 40.206 97 55 2 11 105 89 184 4.91e-14 70.9
Msa0861300 MtrunA17_Chr7g0229131 35.714 98 61 1 41 136 4 101 9.95e-14 67.4
Msa0861300 MtrunA17_Chr3g0093811 39.362 94 51 3 34 121 4 97 6.56e-13 67.0
Msa0861300 MtrunA17_Chr7g0229101 44.286 70 37 1 41 108 4 73 1.11e-12 65.5
Msa0861300 MtrunA17_Chr5g0434901 42.424 66 36 1 45 108 9 74 5.61e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861300 AT2G26960.1 43.949 157 74 2 11 153 22 178 1.10e-39 142
Msa0861300 AT2G32460.1 43.357 143 72 2 10 150 19 154 6.67e-37 136
Msa0861300 AT2G32460.2 43.357 143 72 2 10 150 7 142 6.68e-37 136
Msa0861300 AT5G55020.1 51.282 117 55 1 10 124 27 143 4.88e-36 134
Msa0861300 AT3G11440.2 49.580 119 58 1 10 126 42 160 2.93e-35 131
Msa0861300 AT3G11440.3 49.580 119 58 1 10 126 42 160 7.66e-35 131
Msa0861300 AT3G11440.4 49.580 119 58 1 10 126 42 160 7.66e-35 131
Msa0861300 AT3G11440.1 49.580 119 58 1 10 126 42 160 7.66e-35 131
Msa0861300 AT4G38620.1 43.506 154 80 4 7 155 10 161 1.22e-34 126
Msa0861300 AT4G26930.1 44.203 138 71 2 10 145 20 153 1.29e-34 128
Msa0861300 AT5G06100.1 50.435 115 55 1 10 122 33 147 1.37e-34 129
Msa0861300 AT5G56110.1 51.282 117 54 2 8 121 11 127 1.53e-34 127
Msa0861300 AT5G06100.5 50.435 115 55 1 10 122 33 147 3.57e-34 129
Msa0861300 AT5G06100.2 50.435 115 55 1 10 122 33 147 3.57e-34 129
Msa0861300 AT5G06100.3 50.435 115 55 1 10 122 33 147 3.57e-34 129
Msa0861300 AT5G06100.4 50.435 115 55 1 10 122 33 147 3.57e-34 129
Msa0861300 AT4G09460.1 42.953 149 80 3 7 150 10 158 8.92e-34 122
Msa0861300 AT2G26950.1 50.000 114 55 1 11 122 18 131 5.23e-33 124
Msa0861300 AT3G12720.1 48.739 119 58 2 9 124 22 140 2.95e-32 120
Msa0861300 AT4G01680.3 45.588 136 68 3 10 139 13 148 3.93e-32 118
Msa0861300 AT4G21440.1 50.450 111 52 2 10 117 13 123 5.92e-32 120
Msa0861300 AT5G26660.1 48.387 124 61 2 10 130 13 136 8.55e-32 120
Msa0861300 AT4G34990.1 44.853 136 70 3 9 141 12 145 9.63e-32 118
Msa0861300 AT5G65230.1 47.244 127 64 2 3 126 6 132 1.10e-31 119
Msa0861300 AT1G35515.1 48.246 114 56 2 7 117 10 123 1.16e-31 116
Msa0861300 AT1G57560.2 45.775 142 70 3 10 144 13 154 1.81e-31 117
Msa0861300 AT3G61250.1 48.649 111 54 2 10 117 13 123 1.87e-31 118
Msa0861300 AT4G01680.1 45.588 136 68 3 10 139 13 148 2.49e-31 119
Msa0861300 AT1G18570.1 46.957 115 58 2 10 121 14 128 3.50e-31 118
Msa0861300 AT1G57560.1 40.782 179 92 5 10 177 13 188 3.57e-31 117
Msa0861300 AT1G22640.1 47.059 119 60 2 7 122 10 128 4.26e-31 116
Msa0861300 AT4G28110.1 49.558 113 54 2 9 118 12 124 4.69e-31 117
Msa0861300 AT5G10280.1 47.059 119 60 2 10 125 13 131 5.02e-31 117
Msa0861300 AT5G54230.1 49.107 112 54 2 9 117 12 123 5.54e-31 117
Msa0861300 AT4G05100.1 51.351 111 51 2 10 117 14 124 7.49e-31 117
Msa0861300 AT1G09540.1 49.194 124 58 3 10 130 13 134 1.05e-30 117
Msa0861300 AT3G49690.1 52.830 106 47 2 7 109 10 115 1.28e-30 116
Msa0861300 AT4G37780.1 49.550 111 51 3 9 114 12 122 1.96e-30 115
Msa0861300 AT5G16770.4 44.538 119 63 2 10 125 13 131 2.35e-30 115
Msa0861300 AT5G16770.3 44.538 119 63 2 10 125 13 131 2.35e-30 115
Msa0861300 AT5G16770.1 44.538 119 63 2 10 125 13 131 3.52e-30 115
Msa0861300 AT5G16770.2 44.538 119 63 2 10 125 13 131 3.52e-30 115
Msa0861300 AT2G16720.1 41.860 129 72 2 11 136 14 142 3.70e-30 114
Msa0861300 AT5G61420.2 45.217 115 60 2 10 121 13 127 3.78e-30 116
Msa0861300 AT1G74080.1 44.800 125 66 2 10 131 13 137 6.03e-30 115
Msa0861300 AT3G23250.1 48.571 105 51 2 10 111 13 117 6.66e-30 114
Msa0861300 AT5G65790.1 52.830 106 47 2 7 109 10 115 6.94e-30 115
Msa0861300 AT5G15310.4 44.355 124 66 2 10 130 13 136 7.05e-30 112
Msa0861300 AT3G01140.2 41.791 134 75 2 7 137 10 143 8.39e-30 114
Msa0861300 AT3G01140.1 41.791 134 75 2 7 137 53 186 9.32e-30 115
Msa0861300 AT5G57620.1 52.252 111 49 3 7 113 10 120 1.12e-29 114
Msa0861300 AT5G07690.1 46.087 115 59 2 10 121 13 127 1.27e-29 114
Msa0861300 AT3G27810.1 46.847 111 57 1 5 113 16 126 1.28e-29 111
Msa0861300 AT5G07700.1 45.217 115 60 2 10 121 13 127 1.62e-29 114
Msa0861300 AT5G07700.2 45.217 115 60 2 10 121 13 127 1.62e-29 114
Msa0861300 AT5G15310.2 44.355 124 66 2 10 130 13 136 1.89e-29 113
Msa0861300 AT5G15310.1 44.355 124 66 2 10 130 13 136 1.95e-29 113
Msa0861300 AT3G02940.2 43.697 119 64 2 10 125 13 131 3.12e-29 112
Msa0861300 AT5G40350.1 47.619 105 53 1 7 109 15 119 3.67e-29 110
Msa0861300 AT3G02940.1 43.697 119 64 2 10 125 13 131 5.15e-29 112
Msa0861300 AT3G02940.3 43.697 119 64 2 10 125 13 131 5.15e-29 112
Msa0861300 AT5G23000.1 51.923 104 47 2 9 109 12 115 5.68e-29 112
Msa0861300 AT2G36890.1 46.552 116 59 2 7 119 10 125 1.07e-28 110
Msa0861300 AT3G27920.1 49.020 102 50 1 10 109 15 116 1.18e-28 109
Msa0861300 AT1G63910.1 47.368 114 57 2 2 112 5 118 1.23e-28 112
Msa0861300 AT5G14750.1 47.706 109 50 2 4 105 6 114 1.46e-28 108
Msa0861300 AT2G31180.1 46.729 107 54 2 9 112 12 118 1.50e-28 109
Msa0861300 AT3G13890.2 46.364 110 57 1 2 109 5 114 1.71e-28 111
Msa0861300 AT5G16600.1 45.736 129 65 3 10 135 13 139 1.71e-28 110
Msa0861300 AT5G12870.1 48.246 114 57 1 2 113 11 124 1.84e-28 110
Msa0861300 AT2G36890.2 46.552 116 59 2 7 119 51 166 2.05e-28 110
Msa0861300 AT5G60890.1 45.217 115 60 2 10 121 13 127 2.66e-28 109
Msa0861300 AT5G52600.1 42.647 136 66 3 9 132 12 147 2.70e-28 107
Msa0861300 AT4G01680.2 41.892 148 68 4 10 139 13 160 4.05e-28 110
Msa0861300 AT1G66230.1 45.600 125 61 3 10 127 13 137 4.06e-28 108
Msa0861300 AT3G08500.1 48.571 105 52 1 10 112 31 135 4.46e-28 110
Msa0861300 AT1G34670.1 47.321 112 56 2 10 118 13 124 4.48e-28 110
Msa0861300 AT1G18710.1 42.478 113 62 2 10 119 13 125 4.85e-28 108
Msa0861300 AT1G74430.1 43.750 112 60 2 10 118 13 124 5.32e-28 108
Msa0861300 AT5G40330.1 46.078 102 53 1 10 109 13 114 7.49e-28 106
Msa0861300 AT1G74650.1 46.154 104 54 1 8 109 11 114 8.58e-28 109
Msa0861300 AT3G28910.1 48.598 107 52 2 9 112 12 118 8.64e-28 108
Msa0861300 AT3G28470.1 48.515 101 50 1 7 105 10 110 9.39e-28 108
Msa0861300 AT3G13540.1 38.806 134 72 3 10 133 24 157 1.03e-27 107
Msa0861300 AT4G17785.1 46.903 113 57 2 9 118 13 125 1.39e-27 109
Msa0861300 AT4G17785.2 46.903 113 57 2 9 118 13 125 1.40e-27 108
Msa0861300 AT1G56160.1 47.573 103 52 1 9 109 14 116 1.51e-27 107
Msa0861300 AT2G47190.1 45.370 108 57 1 7 112 18 125 1.59e-27 107
Msa0861300 AT1G06180.1 49.020 102 50 1 10 109 13 114 2.22e-27 106
Msa0861300 AT1G16490.1 47.573 103 52 1 9 109 14 116 2.24e-27 107
Msa0861300 AT3G47600.1 47.664 107 53 2 9 112 12 118 2.45e-27 108
Msa0861300 AT3G01530.1 48.039 102 51 1 7 106 23 124 2.59e-27 105
Msa0861300 AT4G22680.1 40.523 153 84 4 9 155 12 163 2.93e-27 106
Msa0861300 AT5G62470.2 47.664 107 53 2 9 112 12 118 3.64e-27 107
Msa0861300 AT1G79180.1 39.583 144 78 3 9 143 14 157 3.77e-27 106
Msa0861300 AT3G12820.1 44.545 110 58 2 7 113 12 121 6.30e-27 104
Msa0861300 AT1G08810.1 48.113 106 52 2 10 112 13 118 6.65e-27 105
Msa0861300 AT2G47460.1 48.077 104 51 2 10 110 13 116 9.90e-27 107
Msa0861300 AT5G62320.1 42.963 135 67 3 10 134 14 148 1.10e-26 104
Msa0861300 AT5G14340.1 43.478 115 62 2 10 121 25 139 1.25e-26 105
Msa0861300 AT3G62610.1 47.115 104 52 2 10 110 13 116 1.54e-26 106
Msa0861300 AT1G25340.1 42.202 109 61 1 7 113 16 124 2.95e-26 104
Msa0861300 AT1G48000.1 43.925 107 58 1 8 112 31 137 4.77e-26 102
Msa0861300 AT3G60460.1 44.444 108 57 2 8 112 10 117 5.54e-26 103
Msa0861300 AT5G62470.1 47.664 107 52 3 9 112 12 117 7.62e-26 104
Msa0861300 AT1G68320.1 42.453 106 59 1 10 113 20 125 7.70e-26 103
Msa0861300 AT5G49330.1 45.918 98 51 1 10 105 13 110 8.92e-26 103
Msa0861300 AT3G13890.1 42.857 119 57 2 2 109 5 123 1.23e-25 103
Msa0861300 AT5G35550.1 42.727 110 61 1 2 109 7 116 2.03e-25 101
Msa0861300 AT4G13480.1 46.667 105 54 1 10 112 7 111 4.41e-25 100
Msa0861300 AT3G30210.1 43.810 105 57 1 10 112 28 132 6.93e-25 100
Msa0861300 AT3G24310.1 44.762 105 56 1 10 112 19 123 1.30e-24 99.4
Msa0861300 AT4G12350.1 46.429 112 57 2 9 117 12 123 1.92e-24 99.4
Msa0861300 AT1G56650.1 38.583 127 67 2 4 119 3 129 3.72e-24 97.8
Msa0861300 AT5G59780.3 42.609 115 61 2 8 117 7 121 4.95e-24 97.1
Msa0861300 AT1G66380.1 42.308 104 58 1 4 105 3 106 1.66e-23 93.2
Msa0861300 AT3G53200.1 45.098 102 54 1 10 109 10 111 2.48e-23 95.5
Msa0861300 AT3G46130.1 42.478 113 60 2 10 117 10 122 2.50e-23 95.9
Msa0861300 AT5G52260.1 46.429 112 55 2 10 119 13 121 6.79e-23 94.7
Msa0861300 AT3G06490.1 45.370 108 57 1 8 113 18 125 1.19e-22 95.1
Msa0861300 AT3G48920.1 42.056 107 60 1 5 109 14 120 2.17e-22 93.2
Msa0861300 AT4G18770.1 45.545 101 52 2 11 109 217 316 2.56e-22 95.5
Msa0861300 AT5G40360.1 45.098 102 53 2 11 110 158 258 4.32e-22 94.4
Msa0861300 AT4G25560.1 44.118 102 55 1 10 109 11 112 4.35e-22 92.8
Msa0861300 AT3G27785.1 41.964 112 62 2 4 113 182 292 4.63e-22 94.7
Msa0861300 AT1G25340.2 39.450 109 59 2 7 113 16 119 4.82e-22 92.8
Msa0861300 AT1G66390.1 40.741 108 62 1 4 109 3 110 4.83e-22 92.0
Msa0861300 AT5G26660.2 47.826 92 45 2 42 130 14 105 5.57e-22 93.2
Msa0861300 AT1G79180.2 32.768 177 77 4 9 143 14 190 6.03e-22 93.2
Msa0861300 AT1G25340.3 40.952 105 55 2 7 109 16 115 6.91e-22 92.8
Msa0861300 AT5G49620.1 43.519 108 59 1 8 113 25 132 8.35e-22 92.8
Msa0861300 AT3G50060.1 43.750 112 60 2 7 116 2 112 1.48e-21 92.0
Msa0861300 AT5G58850.1 46.296 108 53 3 5 109 99 204 5.63e-21 91.7
Msa0861300 AT1G66370.1 40.816 98 56 1 10 105 9 106 1.82e-20 87.8
Msa0861300 AT1G17950.1 30.102 196 121 7 11 198 5 192 8.73e-20 85.9
Msa0861300 AT3G55730.1 44.554 101 53 2 11 109 56 155 1.36e-19 87.8
Msa0861300 AT4G37260.1 45.872 109 55 3 11 116 13 120 1.69e-19 86.7
Msa0861300 AT2G25230.1 41.880 117 62 4 7 119 22 136 1.94e-19 84.7
Msa0861300 AT5G67300.1 47.170 106 52 3 7 109 2 106 2.51e-19 85.9
Msa0861300 AT3G09230.1 42.308 104 57 2 8 109 52 154 3.03e-19 86.7
Msa0861300 AT5G11050.1 45.098 102 51 3 11 109 105 204 3.40e-19 86.7
Msa0861300 AT5G17800.1 36.301 146 84 4 1 138 80 224 3.99e-19 85.5
Msa0861300 AT5G49620.2 40.164 122 57 2 8 113 25 146 4.58e-19 85.5
Msa0861300 AT2G39880.1 46.535 101 51 2 11 109 50 149 4.98e-19 85.9
Msa0861300 AT2G23290.1 44.144 111 58 3 2 109 4 113 1.91e-18 83.6
Msa0861300 AT4G33450.1 39.048 105 58 3 10 109 18 121 2.18e-18 82.4
Msa0861300 AT1G73410.2 34.731 167 88 6 11 161 6 167 4.83e-18 80.5
Msa0861300 AT1G69560.2 40.000 105 58 3 4 105 116 218 1.17e-17 81.6
Msa0861300 AT1G73410.1 34.731 167 88 6 11 161 6 167 1.18e-17 80.1
Msa0861300 AT1G69560.1 38.462 104 61 2 4 105 100 202 1.25e-17 81.3
Msa0861300 AT4G32730.5 40.517 116 65 3 11 123 87 201 1.78e-17 82.4
Msa0861300 AT4G32730.5 33.019 106 67 2 2 104 26 130 7.51e-11 62.8
Msa0861300 AT4G32730.4 40.517 116 65 3 11 123 87 201 1.78e-17 82.4
Msa0861300 AT4G32730.4 33.019 106 67 2 2 104 26 130 7.51e-11 62.8
Msa0861300 AT4G32730.3 40.517 116 65 3 11 123 87 201 1.78e-17 82.4
Msa0861300 AT4G32730.3 33.019 106 67 2 2 104 26 130 7.51e-11 62.8
Msa0861300 AT4G32730.2 40.517 116 65 3 11 123 87 201 1.78e-17 82.4
Msa0861300 AT4G32730.2 33.019 106 67 2 2 104 26 130 7.51e-11 62.8
Msa0861300 AT4G32730.1 40.517 116 65 3 11 123 87 201 1.80e-17 82.0
Msa0861300 AT4G32730.1 33.019 106 67 2 2 104 26 130 8.85e-11 62.4
Msa0861300 AT3G09370.3 28.704 216 139 6 8 213 140 350 1.81e-17 82.0
Msa0861300 AT3G09370.2 28.704 216 139 6 8 213 132 342 1.94e-17 82.0
Msa0861300 AT3G53200.2 51.429 70 32 1 42 109 9 78 1.98e-17 78.6
Msa0861300 AT3G09370.1 28.704 216 139 6 8 213 127 337 2.06e-17 81.6
Msa0861300 AT2G37630.1 38.843 121 69 3 11 127 4 123 7.03e-17 79.7
Msa0861300 AT3G27810.2 47.297 74 37 1 42 113 4 77 7.12e-17 76.6
Msa0861300 AT5G40350.2 47.222 72 36 1 40 109 3 74 8.42e-17 76.3
Msa0861300 AT5G11510.3 39.604 101 58 2 11 109 81 180 1.25e-16 79.7
Msa0861300 AT5G11510.1 39.604 101 58 2 11 109 81 180 1.25e-16 79.7
Msa0861300 AT5G11510.4 39.604 101 58 2 11 109 81 180 1.25e-16 79.7
Msa0861300 AT5G11510.2 39.604 101 58 2 11 109 81 180 1.27e-16 79.7
Msa0861300 AT5G11510.5 39.604 101 58 2 11 109 81 180 1.35e-16 79.7
Msa0861300 AT1G66380.2 47.761 67 35 0 5 71 4 70 1.49e-16 73.9
Msa0861300 AT4G00540.2 40.367 109 58 4 10 112 102 209 2.33e-16 78.6
Msa0861300 AT4G00540.1 40.367 109 58 4 10 112 100 207 3.05e-16 78.2
Msa0861300 AT3G12820.2 46.575 73 36 2 44 113 1 73 6.35e-16 74.3
Msa0861300 AT5G40430.1 37.838 111 63 4 7 114 50 157 7.35e-16 75.5
Msa0861300 AT3G47600.2 48.649 74 35 2 42 112 39 112 9.18e-16 76.3
Msa0861300 AT5G14750.3 45.588 68 35 1 44 109 17 84 9.88e-16 73.2
Msa0861300 AT5G35550.2 50.000 70 33 1 42 109 50 119 1.02e-15 75.1
Msa0861300 AT1G26780.1 40.000 105 55 4 11 109 98 200 1.12e-15 75.5
Msa0861300 AT5G02320.1 39.423 104 59 3 11 111 127 229 1.20e-15 76.6
Msa0861300 AT5G02320.2 39.423 104 59 3 11 111 127 229 1.20e-15 76.6
Msa0861300 AT5G02320.3 39.423 104 59 3 11 111 67 169 1.29e-15 76.6
Msa0861300 AT3G46130.3 44.578 83 41 2 40 117 8 90 1.31e-15 74.3
Msa0861300 AT1G26780.2 38.462 104 58 3 11 109 98 200 1.33e-15 75.9
Msa0861300 AT5G59780.2 45.679 81 39 2 42 117 20 100 2.66e-15 73.2
Msa0861300 AT3G46130.4 45.679 81 39 2 42 117 20 100 3.69e-15 73.2
Msa0861300 AT3G29020.2 35.345 116 71 3 4 116 60 174 1.06e-14 72.8
Msa0861300 AT3G29020.1 36.937 111 64 3 4 109 58 167 1.19e-14 71.6
Msa0861300 AT1G66380.3 46.269 67 34 1 41 105 7 73 5.37e-14 67.0
Msa0861300 AT1G18960.1 34.211 114 69 4 5 115 4 114 9.31e-13 67.4
Msa0861300 AT3G18100.1 37.113 97 58 2 9 103 544 639 5.04e-12 66.2
Msa0861300 AT3G18100.3 37.113 97 58 2 9 103 496 591 5.66e-12 65.9
Msa0861300 AT3G18100.4 37.113 97 58 2 9 103 383 478 7.07e-12 65.5
Msa0861300 AT3G18100.2 37.113 97 58 2 9 103 331 426 7.84e-12 65.5

Find 49 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATACCTCGTTCCAATTTC+TGG 0.107867 5_4:-60570683 None:intergenic
TAATATTTCATCTTCTTCTT+TGG 0.201233 5_4:-60570635 None:intergenic
GATTTCAGGGGTAGCATTAT+TGG 0.227047 5_4:+60571220 Msa0861300:CDS
CCTACAACCAGATGTGAAAA+AGG 0.249095 5_4:+60570762 Msa0861300:CDS
ATGTATTGACTTCAGTAATT+TGG 0.259715 5_4:+60571432 Msa0861300:CDS
TCAGTATCATGGTGACTTTA+TGG 0.269513 5_4:+60571324 Msa0861300:CDS
ATAATGACATCAAGAACTTT+TGG 0.308735 5_4:+60571014 Msa0861300:CDS
CTTGTGAATCCTCAACTTGT+TGG 0.318952 5_4:-60571120 None:intergenic
AAAACCATGGAACCAGAAAT+TGG 0.371902 5_4:+60570671 Msa0861300:CDS
AAACCTCCTTGATGACTTCA+TGG 0.396227 5_4:+60571399 Msa0861300:CDS
ATGTCATTATCGCTTCTTCC+CGG 0.399929 5_4:-60571001 None:intergenic
CGTTCCAATTTCTGGTTCCA+TGG 0.417198 5_4:-60570675 None:intergenic
TCATCCGGTTCCATCTTGTC+AGG 0.436579 5_4:-60571082 None:intergenic
TCCTCAAATTCCACCACCTA+TGG 0.442042 5_4:+60571297 Msa0861300:CDS
GGATAGTCACCAAGCATCAT+AGG 0.444307 5_4:-60571277 None:intergenic
TGGTCTAAGCTGGCTCGATC+AGG 0.455334 5_4:+60570850 Msa0861300:CDS
TGAAATATTAAAAGCATATG+TGG 0.459693 5_4:+60570648 Msa0861300:CDS
TCCATAGGTGGTGGAATTTG+AGG 0.460831 5_4:-60571298 None:intergenic
AAAAGTATGGTGAATTCAAA+TGG 0.466521 5_4:+60570830 Msa0861300:intron
CTACTATTCAACTCATCATC+CGG 0.471736 5_4:-60571097 None:intergenic
TGGAACTTCTCATATACCTA+TGG 0.477216 5_4:+60571240 Msa0861300:CDS
CTTCCTTCACCTATGATGCT+TGG 0.481674 5_4:+60571268 Msa0861300:CDS
GTCACCCTTCCCTGACAAGA+TGG 0.495250 5_4:+60571072 Msa0861300:CDS
GTAAAAGTTGTCGTCTAAGA+TGG 0.497716 5_4:+60570731 Msa0861300:CDS
TATTGACTTCAGTAATTTGG+AGG 0.499792 5_4:+60571435 Msa0861300:CDS
CGGTTCCATCTTGTCAGGGA+AGG 0.508810 5_4:-60571077 None:intergenic
CTTCCCTGACAAGATGGAAC+CGG 0.509188 5_4:+60571078 Msa0861300:CDS
TTGGAGGACGATGTTGAAGC+CGG 0.528092 5_4:+60571451 Msa0861300:CDS
TACTGAGTCTCCATAGGTGG+TGG 0.534844 5_4:-60571307 None:intergenic
GAATAGTAGCCAACAAGTTG+AGG 0.541704 5_4:+60571111 Msa0861300:CDS
TGAATTCAAATGGTCTAAGC+TGG 0.550324 5_4:+60570840 Msa0861300:CDS
AGCATCATAGGTGAAGGAAG+TGG 0.575321 5_4:-60571265 None:intergenic
CCTATGGAGACTCAGTATCA+TGG 0.585538 5_4:+60571313 Msa0861300:CDS
CCATGATACTGAGTCTCCAT+AGG 0.586617 5_4:-60571313 None:intergenic
GGTGAAGGAAGTGGAGCCAT+AGG 0.590422 5_4:-60571256 None:intergenic
ATGGATCCATGAAGTCATCA+AGG 0.595005 5_4:-60571405 None:intergenic
TCACCAAGCATCATAGGTGA+AGG 0.597667 5_4:-60571271 None:intergenic
GGTTCCATCTTGTCAGGGAA+GGG 0.605286 5_4:-60571076 None:intergenic
AAAAGAAAACTTGAAAAGCG+TGG 0.617466 5_4:+60571046 Msa0861300:CDS
CTGAAGTCAATACATAGACA+TGG 0.618549 5_4:-60571424 None:intergenic
AAAGCATATGTGGAAAACCA+TGG 0.619332 5_4:+60570658 Msa0861300:CDS
TCTAAGCTGGCTCGATCAGG+AGG 0.636811 5_4:+60570853 Msa0861300:CDS
CATCCGGTTCCATCTTGTCA+GGG 0.638065 5_4:-60571081 None:intergenic
GAGGACGATGTTGAAGCCGG+CGG 0.660817 5_4:+60571454 Msa0861300:CDS
ACTGTCAAATAAACGACCGC+CGG 0.667707 5_4:-60571470 None:intergenic
TGATACTGAGTCTCCATAGG+TGG 0.687296 5_4:-60571310 None:intergenic
AATGCGGGGCTTATACGTTG+CGG 0.693414 5_4:+60570709 Msa0861300:CDS
GATCCATGAAGTCATCAAGG+AGG 0.752147 5_4:-60571402 None:intergenic
TGGAACCAGAAATTGGAACG+AGG 0.771577 5_4:+60570678 Msa0861300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_4:60571163-60571182 None:intergenic 15.0%
!!! TATTTTCTAAATTTCAATTG+TGG - chr5_4:60571163-60571182 None:intergenic 15.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_4:60570638-60570657 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_4:60570648-60570667 Msa0861300:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_4:60570817-60570836 Msa0861300:intron 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_4:60571187-60571206 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_4:60571206-60571225 Msa0861300:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_4:60571207-60571226 Msa0861300:CDS 20.0%
!! TAATATTTCATCTTCTTCTT+TGG - chr5_4:60570638-60570657 None:intergenic 20.0%
!!! TGAAATATTAAAAGCATATG+TGG + chr5_4:60570648-60570667 Msa0861300:CDS 20.0%
!!! TTTGAGTTCTATAAAAAGTA+TGG + chr5_4:60570817-60570836 Msa0861300:intron 20.0%
!! TTTATCTCATCAAAAATTGA+TGG - chr5_4:60571187-60571206 None:intergenic 20.0%
!!! ATGAAAAACTTTTAGATTTC+AGG + chr5_4:60571206-60571225 Msa0861300:CDS 20.0%
!!! TGAAAAACTTTTAGATTTCA+GGG + chr5_4:60571207-60571226 Msa0861300:CDS 20.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG - chr5_4:60570614-60570633 None:intergenic 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_4:60570790-60570809 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_4:60570830-60570849 Msa0861300:intron 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_4:60570935-60570954 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_4:60571014-60571033 Msa0861300:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_4:60571208-60571227 Msa0861300:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_4:60571432-60571451 Msa0861300:CDS 25.0%
!!! CCATTTTCCTTTTTTAGTAT+CGG - chr5_4:60570614-60570633 None:intergenic 25.0%
!!! CTTTTTTCTTCTTCACTAAA+TGG - chr5_4:60570790-60570809 None:intergenic 25.0%
!! AAAAGTATGGTGAATTCAAA+TGG + chr5_4:60570830-60570849 Msa0861300:intron 25.0%
! AACAAAATAATCAACACAAG+TGG - chr5_4:60570935-60570954 None:intergenic 25.0%
!! ATAATGACATCAAGAACTTT+TGG + chr5_4:60571014-60571033 Msa0861300:CDS 25.0%
!! GAAAAACTTTTAGATTTCAG+GGG + chr5_4:60571208-60571227 Msa0861300:CDS 25.0%
!!! ATGTATTGACTTCAGTAATT+TGG + chr5_4:60571432-60571451 Msa0861300:CDS 25.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG - chr5_4:60570611-60570630 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG + chr5_4:60570611-60570630 Msa0861300:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_4:60570919-60570938 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_4:60571046-60571065 Msa0861300:CDS 30.0%
! ACTTTATGGATCCAGATTTT+TGG + chr5_4:60571338-60571357 Msa0861300:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_4:60571435-60571454 Msa0861300:CDS 30.0%
!!! TTTTCCTTTTTTAGTATCGG+CGG - chr5_4:60570611-60570630 None:intergenic 30.0%
CCGATACTAAAAAAGGAAAA+TGG + chr5_4:60570611-60570630 Msa0861300:CDS 30.0%
CAAGTGGTGAATATTATAGA+AGG - chr5_4:60570919-60570938 None:intergenic 30.0%
AAAAGAAAACTTGAAAAGCG+TGG + chr5_4:60571046-60571065 Msa0861300:CDS 30.0%
! ACTTTATGGATCCAGATTTT+TGG + chr5_4:60571338-60571357 Msa0861300:CDS 30.0%
!! TATTGACTTCAGTAATTTGG+AGG + chr5_4:60571435-60571454 Msa0861300:CDS 30.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_4:60570658-60570677 Msa0861300:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG + chr5_4:60570671-60570690 Msa0861300:CDS 35.0%
! GAACGAGGTATCAAAAAATG+CGG + chr5_4:60570693-60570712 Msa0861300:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_4:60570694-60570713 Msa0861300:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_4:60570731-60570750 Msa0861300:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_4:60570763-60570782 Msa0861300:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_4:60570840-60570859 Msa0861300:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_4:60570982-60571001 Msa0861300:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_4:60570983-60571002 Msa0861300:intron 35.0%
CTACTATTCAACTCATCATC+CGG - chr5_4:60571100-60571119 None:intergenic 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_4:60571240-60571259 Msa0861300:CDS 35.0%
TCAGTATCATGGTGACTTTA+TGG + chr5_4:60571324-60571343 Msa0861300:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_4:60571352-60571371 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_4:60571427-60571446 None:intergenic 35.0%
AAAGCATATGTGGAAAACCA+TGG + chr5_4:60570658-60570677 Msa0861300:CDS 35.0%
AAAACCATGGAACCAGAAAT+TGG + chr5_4:60570671-60570690 Msa0861300:CDS 35.0%
! GAACGAGGTATCAAAAAATG+CGG + chr5_4:60570693-60570712 Msa0861300:CDS 35.0%
! AACGAGGTATCAAAAAATGC+GGG + chr5_4:60570694-60570713 Msa0861300:CDS 35.0%
GTAAAAGTTGTCGTCTAAGA+TGG + chr5_4:60570731-60570750 Msa0861300:CDS 35.0%
CTACAACCAGATGTGAAAAA+GGG + chr5_4:60570763-60570782 Msa0861300:CDS 35.0%
TGAATTCAAATGGTCTAAGC+TGG + chr5_4:60570840-60570859 Msa0861300:CDS 35.0%
! GTTCTTTTTGTGTCAGTTAC+CGG + chr5_4:60570982-60571001 Msa0861300:intron 35.0%
! TTCTTTTTGTGTCAGTTACC+GGG + chr5_4:60570983-60571002 Msa0861300:intron 35.0%
CTACTATTCAACTCATCATC+CGG - chr5_4:60571100-60571119 None:intergenic 35.0%
TGGAACTTCTCATATACCTA+TGG + chr5_4:60571240-60571259 Msa0861300:CDS 35.0%
TCAGTATCATGGTGACTTTA+TGG + chr5_4:60571324-60571343 Msa0861300:CDS 35.0%
CTGTTGTGTAACCAAAAATC+TGG - chr5_4:60571352-60571371 None:intergenic 35.0%
CTGAAGTCAATACATAGACA+TGG - chr5_4:60571427-60571446 None:intergenic 35.0%
TCATCCGCCGATACTAAAAA+AGG + chr5_4:60570604-60570623 Msa0861300:CDS 40.0%
TGATACCTCGTTCCAATTTC+TGG - chr5_4:60570686-60570705 None:intergenic 40.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_4:60570695-60570714 Msa0861300:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_4:60570765-60570784 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_4:60570762-60570781 Msa0861300:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_4:60570772-60570791 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG - chr5_4:60571004-60571023 None:intergenic 40.0%
GAATAGTAGCCAACAAGTTG+AGG + chr5_4:60571111-60571130 Msa0861300:CDS 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_4:60571123-60571142 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_4:60571220-60571239 Msa0861300:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_4:60571399-60571418 Msa0861300:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_4:60571408-60571427 None:intergenic 40.0%
TCATCCGCCGATACTAAAAA+AGG + chr5_4:60570604-60570623 Msa0861300:CDS 40.0%
TGATACCTCGTTCCAATTTC+TGG - chr5_4:60570686-60570705 None:intergenic 40.0%
! ACGAGGTATCAAAAAATGCG+GGG + chr5_4:60570695-60570714 Msa0861300:CDS 40.0%
!! CCTTTTTCACATCTGGTTGT+AGG - chr5_4:60570765-60570784 None:intergenic 40.0%
CCTACAACCAGATGTGAAAA+AGG + chr5_4:60570762-60570781 Msa0861300:CDS 40.0%
!! AATGGACCCTTTTTCACATC+TGG - chr5_4:60570772-60570791 None:intergenic 40.0%
ATGTCATTATCGCTTCTTCC+CGG - chr5_4:60571004-60571023 None:intergenic 40.0%
GAATAGTAGCCAACAAGTTG+AGG + chr5_4:60571111-60571130 Msa0861300:CDS 40.0%
CTTGTGAATCCTCAACTTGT+TGG - chr5_4:60571123-60571142 None:intergenic 40.0%
GATTTCAGGGGTAGCATTAT+TGG + chr5_4:60571220-60571239 Msa0861300:CDS 40.0%
! AAACCTCCTTGATGACTTCA+TGG + chr5_4:60571399-60571418 Msa0861300:CDS 40.0%
ATGGATCCATGAAGTCATCA+AGG - chr5_4:60571408-60571427 None:intergenic 40.0%
!! CGTTCCAATTTCTGGTTCCA+TGG - chr5_4:60570678-60570697 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG + chr5_4:60570678-60570697 Msa0861300:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_4:60571268-60571287 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_4:60571268-60571287 Msa0861300:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_4:60571274-60571293 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_4:60571280-60571299 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_4:60571297-60571316 Msa0861300:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_4:60571301-60571320 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_4:60571313-60571332 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_4:60571316-60571335 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_4:60571313-60571332 Msa0861300:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_4:60571405-60571424 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_4:60571473-60571492 None:intergenic 45.0%
!! CGTTCCAATTTCTGGTTCCA+TGG - chr5_4:60570678-60570697 None:intergenic 45.0%
TGGAACCAGAAATTGGAACG+AGG + chr5_4:60570678-60570697 Msa0861300:CDS 45.0%
AGCATCATAGGTGAAGGAAG+TGG - chr5_4:60571268-60571287 None:intergenic 45.0%
CTTCCTTCACCTATGATGCT+TGG + chr5_4:60571268-60571287 Msa0861300:CDS 45.0%
TCACCAAGCATCATAGGTGA+AGG - chr5_4:60571274-60571293 None:intergenic 45.0%
GGATAGTCACCAAGCATCAT+AGG - chr5_4:60571280-60571299 None:intergenic 45.0%
TCCTCAAATTCCACCACCTA+TGG + chr5_4:60571297-60571316 Msa0861300:CDS 45.0%
!! TCCATAGGTGGTGGAATTTG+AGG - chr5_4:60571301-60571320 None:intergenic 45.0%
TGATACTGAGTCTCCATAGG+TGG - chr5_4:60571313-60571332 None:intergenic 45.0%
CCATGATACTGAGTCTCCAT+AGG - chr5_4:60571316-60571335 None:intergenic 45.0%
CCTATGGAGACTCAGTATCA+TGG + chr5_4:60571313-60571332 Msa0861300:CDS 45.0%
GATCCATGAAGTCATCAAGG+AGG - chr5_4:60571405-60571424 None:intergenic 45.0%
ACTGTCAAATAAACGACCGC+CGG - chr5_4:60571473-60571492 None:intergenic 45.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_4:60570709-60570728 Msa0861300:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_4:60571079-60571098 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_4:60571078-60571097 Msa0861300:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_4:60571084-60571103 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_4:60571085-60571104 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_4:60571310-60571329 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_4:60571451-60571470 Msa0861300:CDS 50.0%
AATGCGGGGCTTATACGTTG+CGG + chr5_4:60570709-60570728 Msa0861300:CDS 50.0%
GGTTCCATCTTGTCAGGGAA+GGG - chr5_4:60571079-60571098 None:intergenic 50.0%
CTTCCCTGACAAGATGGAAC+CGG + chr5_4:60571078-60571097 Msa0861300:CDS 50.0%
CATCCGGTTCCATCTTGTCA+GGG - chr5_4:60571084-60571103 None:intergenic 50.0%
TCATCCGGTTCCATCTTGTC+AGG - chr5_4:60571085-60571104 None:intergenic 50.0%
TACTGAGTCTCCATAGGTGG+TGG - chr5_4:60571310-60571329 None:intergenic 50.0%
TTGGAGGACGATGTTGAAGC+CGG + chr5_4:60571451-60571470 Msa0861300:CDS 50.0%
!! TGGTCTAAGCTGGCTCGATC+AGG + chr5_4:60570850-60570869 Msa0861300:CDS 55.0%
!! TCTAAGCTGGCTCGATCAGG+AGG + chr5_4:60570853-60570872 Msa0861300:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_4:60571072-60571091 Msa0861300:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_4:60571080-60571099 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_4:60571259-60571278 None:intergenic 55.0%
!! TGGTCTAAGCTGGCTCGATC+AGG + chr5_4:60570850-60570869 Msa0861300:CDS 55.0%
!! TCTAAGCTGGCTCGATCAGG+AGG + chr5_4:60570853-60570872 Msa0861300:CDS 55.0%
GTCACCCTTCCCTGACAAGA+TGG + chr5_4:60571072-60571091 Msa0861300:CDS 55.0%
CGGTTCCATCTTGTCAGGGA+AGG - chr5_4:60571080-60571099 None:intergenic 55.0%
GGTGAAGGAAGTGGAGCCAT+AGG - chr5_4:60571259-60571278 None:intergenic 55.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_4:60571454-60571473 Msa0861300:CDS 60.0%
GAGGACGATGTTGAAGCCGG+CGG + chr5_4:60571454-60571473 Msa0861300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60570592 60571513 60570592 ID=Msa0861300;Name=Msa0861300
chr5_4 mRNA 60570592 60571513 60570592 ID=Msa0861300-mRNA-1;Parent=Msa0861300;Name=Msa0861300-mRNA-1;_AED=0.05;_eAED=0.10;_QI=0|0|0|1|0|0.33|3|0|261
chr5_4 exon 60570592 60570821 60570592 ID=Msa0861300-mRNA-1:exon:18695;Parent=Msa0861300-mRNA-1
chr5_4 exon 60570835 60570874 60570835 ID=Msa0861300-mRNA-1:exon:18696;Parent=Msa0861300-mRNA-1
chr5_4 exon 60570998 60571513 60570998 ID=Msa0861300-mRNA-1:exon:18697;Parent=Msa0861300-mRNA-1
chr5_4 CDS 60570592 60570821 60570592 ID=Msa0861300-mRNA-1:cds;Parent=Msa0861300-mRNA-1
chr5_4 CDS 60570835 60570874 60570835 ID=Msa0861300-mRNA-1:cds;Parent=Msa0861300-mRNA-1
chr5_4 CDS 60570998 60571513 60570998 ID=Msa0861300-mRNA-1:cds;Parent=Msa0861300-mRNA-1
Gene Sequence

>Msa0861300

ATGTCTTCATCATCATCCGCCGATACTAAAAAAGGAAAATGGTCCAAAGAAGAAGATGAAATATTAAAAGCATATGTGGAAAACCATGGAACCAGAAATTGGAACGAGGTATCAAAAAATGCGGGGCTTATACGTTGCGGTAAAAGTTGTCGTCTAAGATGGTATAATCACCTACAACCAGATGTGAAAAAGGGTCCATTTAGTGAAGAAGAAAAAAGAAAAGTTTTTGATATGGTGAATTCAAATGGTCTAAGCTGGCTCGATCAGGAGTTACCGGGAAGAAGCGATAATGACATCAAGAACTTTTGGAATGCGAGAAAAAGAAAACTTGAAAAGCGTGGCTTGTCACCCTTCCCTGACAAGATGGAACCGGATGATGAGTTGAATAGTAGCCAACAAGTTGAGGATTCACAAGAAGATGAATTTAATATACCACAATTGAAATTTAGAAAATATCCATCAATTTTTGATGAGATAAATGAAAAACTTTTAGATTTCAGGGGTAGCATTATTGGAACTTCTCATATACCTATGGCTCCACTTCCTTCACCTATGATGCTTGGTGACTATCCTCAAATTCCACCACCTATGGAGACTCAGTATCATGGTGACTTTATGGATCCAGATTTTTGGTTACACAACAGTTCATTAGACAATGACGATGCTGAAGCAAACCTCCTTGATGACTTCATGGATCCATGTCTATGTATTGACTTCAGTAATTTGGAGGACGATGTTGAAGCCGGCGGTCGTTTATTTGACAGTAACTTGCATGACAAGATATAA
Protein sequence

>Msa0861300

MSSSSSADTKKGKWSKEEDEILKAYVENHGTRNWNEVSKNAGLIRCGKSCRLRWYNHLQPDVKKGPFSEEEKRKVFDMVNSNGLSWLDQELPGRSDNDIKNFWNARKRKLEKRGLSPFPDKMEPDDELNSSQQVEDSQEDEFNIPQLKFRKYPSIFDEINEKLLDFRGSIIGTSHIPMAPLPSPMMLGDYPQIPPPMETQYHGDFMDPDFWLHNSSLDNDDAEANLLDDFMDPCLCIDFSNLEDDVEAGGRLFDSNLHDKI*