AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861550 MtrunA17_Chr5g0395281 97.674 301 5 1 1 301 1 299 0.0 608
Msa0861550 MtrunA17_Chr4g0039971 51.705 352 112 12 1 301 2 346 9.98e-108 317
Msa0861550 MtrunA17_Chr5g0395231 60.976 246 70 6 80 301 5 248 8.52e-93 275
Msa0861550 MtrunA17_Chr3g0115821 75.497 151 29 2 1 145 1 149 2.10e-80 247
Msa0861550 MtrunA17_Chr5g0410961 41.860 344 147 11 1 301 1 334 2.93e-71 223
Msa0861550 MtrunA17_Chr6g0453471 50.698 215 83 4 1 194 1 213 1.08e-66 212
Msa0861550 MtrunA17_Chr2g0323411 68.085 141 43 1 1 141 1 139 6.72e-66 209
Msa0861550 MtrunA17_Chr4g0048511 67.606 142 43 2 1 141 1 140 7.20e-66 210
Msa0861550 MtrunA17_Chr2g0281071 70.455 132 36 2 1 131 1 130 9.69e-66 209
Msa0861550 MtrunA17_Chr7g0217741 65.926 135 44 1 1 135 1 133 1.70e-63 202
Msa0861550 MtrunA17_Chr4g0042671 66.418 134 43 1 1 134 1 132 4.20e-62 202
Msa0861550 MtrunA17_Chr8g0349261 68.702 131 39 2 1 130 1 130 7.23e-62 198
Msa0861550 MtrunA17_Chr7g0270891 70.248 121 36 0 13 133 11 131 3.73e-59 193
Msa0861550 MtrunA17_Chr7g0274581 69.167 120 35 1 1 120 1 118 3.51e-58 185
Msa0861550 MtrunA17_Chr1g0193371 67.769 121 39 0 13 133 11 131 7.06e-58 190
Msa0861550 MtrunA17_Chr1g0187761 71.667 120 32 1 1 120 1 118 1.17e-57 186
Msa0861550 MtrunA17_Chr1g0193801 67.769 121 39 0 13 133 11 131 1.35e-57 189
Msa0861550 MtrunA17_Chr1g0211161 65.873 126 43 0 13 138 12 137 1.60e-57 184
Msa0861550 MtrunA17_Chr5g0434571 63.846 130 45 1 1 130 37 164 7.11e-57 187
Msa0861550 MtrunA17_Chr3g0110351 65.116 129 43 1 1 129 1 127 8.53e-57 185
Msa0861550 MtrunA17_Chr3g0117091 65.079 126 44 0 13 138 11 136 9.30e-57 186
Msa0861550 MtrunA17_Chr4g0057031 63.077 130 46 1 1 130 1 128 1.52e-56 183
Msa0861550 MtrunA17_Chr4g0058631 66.942 121 40 0 13 133 11 131 1.92e-56 186
Msa0861550 MtrunA17_Chr4g0037141 61.538 130 48 1 1 130 1 128 3.36e-56 183
Msa0861550 MtrunA17_Chr1g0203411 67.500 120 37 1 1 120 1 118 1.39e-55 182
Msa0861550 MtrunA17_Chr2g0309911 65.546 119 41 0 10 128 7 125 2.33e-55 182
Msa0861550 MtrunA17_Chr3g0131121 60.902 133 50 1 1 133 1 131 2.63e-55 181
Msa0861550 MtrunA17_Chr5g0435101 60.156 128 49 1 2 129 1 126 8.92e-55 177
Msa0861550 MtrunA17_Chr7g0261281 66.667 120 38 1 1 120 1 118 4.14e-54 177
Msa0861550 MtrunA17_Chr1g0167661 67.227 119 37 1 1 119 1 117 4.61e-54 176
Msa0861550 MtrunA17_Chr8g0385321 60.000 130 50 1 1 130 1 128 5.83e-54 178
Msa0861550 MtrunA17_Chr1g0167691 66.387 119 38 1 1 119 1 117 7.39e-54 176
Msa0861550 MtrunA17_Chr6g0452271 53.472 144 65 1 1 144 1 142 1.66e-53 177
Msa0861550 MtrunA17_Chr7g0228891 56.954 151 63 1 1 151 1 149 9.08e-53 174
Msa0861550 MtrunA17_Chr7g0217221 64.167 120 41 1 1 120 1 118 1.53e-52 173
Msa0861550 MtrunA17_Chr3g0121241 62.931 116 43 0 15 130 43 158 1.59e-52 174
Msa0861550 MtrunA17_Chr7g0271241 66.129 124 42 0 13 136 11 134 5.51e-52 175
Msa0861550 MtrunA17_Chr3g0103281 60.000 130 50 1 1 130 1 128 6.31e-52 173
Msa0861550 MtrunA17_Chr3g0092401 61.983 121 44 1 1 121 2 120 1.22e-51 172
Msa0861550 MtrunA17_Chr4g0044421 60.630 127 49 1 2 128 1 126 1.30e-51 168
Msa0861550 MtrunA17_Chr4g0068061 64.407 118 40 1 1 118 1 116 3.22e-51 172
Msa0861550 MtrunA17_Chr5g0417821 59.836 122 49 0 11 132 4 125 3.88e-51 170
Msa0861550 MtrunA17_Chr7g0275911 63.559 118 41 1 1 118 1 116 1.39e-50 167
Msa0861550 MtrunA17_Chr7g0254411 62.205 127 44 2 1 125 1 125 1.41e-50 170
Msa0861550 MtrunA17_Chr2g0330041 63.478 115 42 0 13 127 11 125 1.78e-50 171
Msa0861550 MtrunA17_Chr8g0342521 60.656 122 48 0 13 134 11 132 6.17e-50 169
Msa0861550 MtrunA17_Chr4g0060721 61.864 118 43 1 1 118 2 117 9.91e-50 167
Msa0861550 MtrunA17_Chr2g0323351 61.667 120 44 1 1 120 1 118 1.73e-49 164
Msa0861550 MtrunA17_Chr8g0346561 61.667 120 44 1 1 120 1 118 2.98e-49 166
Msa0861550 MtrunA17_Chr8g0342541 62.832 113 42 0 13 125 11 123 3.73e-49 166
Msa0861550 MtrunA17_Chr8g0387421 67.925 106 34 0 13 118 11 116 4.22e-49 166
Msa0861550 MtrunA17_Chr6g0453211 62.832 113 40 1 1 113 1 111 1.43e-48 164
Msa0861550 MtrunA17_Chr4g0070641 61.983 121 44 1 1 121 1 119 2.28e-48 159
Msa0861550 MtrunA17_Chr1g0151941 45.455 209 88 8 1 200 1 192 5.10e-48 160
Msa0861550 MtrunA17_Chr4g0070611 61.983 121 44 1 1 121 1 119 5.34e-48 162
Msa0861550 MtrunA17_Chr5g0397231 69.000 100 31 0 13 112 11 110 2.64e-47 161
Msa0861550 MtrunA17_Chr4g0022931 59.664 119 45 2 1 118 1 117 5.07e-47 159
Msa0861550 MtrunA17_Chr4g0028311 58.333 132 51 3 1 131 1 129 5.18e-47 160
Msa0861550 MtrunA17_Chr2g0311221 65.766 111 36 1 3 113 5 113 6.45e-47 160
Msa0861550 MtrunA17_Chr4g0022881 58.621 116 46 1 1 116 1 114 9.21e-47 157
Msa0861550 MtrunA17_Chr4g0022891 61.739 115 42 1 1 115 1 113 1.02e-46 157
Msa0861550 MtrunA17_Chr4g0022911 60.000 120 45 2 1 119 1 118 1.33e-46 158
Msa0861550 MtrunA17_Chr5g0395221 82.222 90 14 1 1 90 1 88 2.22e-46 151
Msa0861550 MtrunA17_Chr1g0194951 56.489 131 55 1 1 131 1 129 2.69e-46 160
Msa0861550 MtrunA17_Chr4g0022901 59.167 120 46 2 1 119 1 118 4.17e-46 156
Msa0861550 MtrunA17_Chr7g0264641 53.846 143 60 4 1 142 1 138 4.79e-46 156
Msa0861550 MtrunA17_Chr1g0203441 62.963 108 40 0 13 120 12 119 1.90e-45 155
Msa0861550 MtrunA17_Chr4g0032401 55.814 129 50 1 13 134 16 144 5.40e-45 155
Msa0861550 MtrunA17_Chr7g0247131 74.419 86 22 0 45 130 9 94 1.60e-44 152
Msa0861550 MtrunA17_Chr6g0450101 56.198 121 53 0 1 121 1 121 2.55e-44 150
Msa0861550 MtrunA17_Chr2g0328771 62.500 104 39 0 15 118 21 124 3.56e-44 153
Msa0861550 MtrunA17_Chr8g0342481 62.963 108 39 1 13 119 11 118 4.22e-44 155
Msa0861550 MtrunA17_Chr3g0080861 60.748 107 42 0 11 117 34 140 6.31e-44 157
Msa0861550 MtrunA17_Chr3g0135311 58.333 120 47 2 1 119 1 118 7.79e-44 152
Msa0861550 MtrunA17_Chr3g0099131 62.264 106 40 0 15 120 42 147 1.09e-43 156
Msa0861550 MtrunA17_Chr1g0152011 58.333 120 47 2 1 119 1 118 1.47e-43 152
Msa0861550 MtrunA17_Chr1g0186061 58.252 103 43 0 15 117 21 123 2.10e-43 149
Msa0861550 MtrunA17_Chr3g0088461 59.322 118 48 0 1 118 9 126 2.67e-43 151
Msa0861550 MtrunA17_Chr7g0228231 61.321 106 41 0 15 120 15 120 2.71e-43 147
Msa0861550 MtrunA17_Chr5g0400821 57.500 120 48 2 1 119 1 118 3.08e-43 150
Msa0861550 MtrunA17_Chr8g0354661 38.596 228 120 6 11 226 34 253 3.49e-43 155
Msa0861550 MtrunA17_Chr1g0168661 58.252 103 43 0 15 117 22 124 4.85e-43 148
Msa0861550 MtrunA17_Chr4g0055981 59.821 112 45 0 16 127 57 168 6.06e-43 147
Msa0861550 MtrunA17_Chr1g0154031 64.078 103 37 0 15 117 77 179 1.15e-42 151
Msa0861550 MtrunA17_Chr2g0327351 59.292 113 43 2 1 112 1 111 1.21e-42 149
Msa0861550 MtrunA17_Chr6g0470971 61.905 105 40 0 13 117 13 117 1.84e-42 147
Msa0861550 MtrunA17_Chr1g0209661 50.376 133 61 1 2 129 10 142 2.33e-42 148
Msa0861550 MtrunA17_Chr1g0194291 56.198 121 51 1 4 124 13 131 3.15e-42 146
Msa0861550 MtrunA17_Chr1g0194301 49.219 128 65 0 4 131 23 150 7.76e-41 143
Msa0861550 MtrunA17_Chr7g0269831 60.169 118 45 1 1 118 1 116 1.11e-40 144
Msa0861550 MtrunA17_Chr7g0240821 59.406 101 41 0 18 118 5 105 1.33e-40 141
Msa0861550 MtrunA17_Chr4g0054391 58.036 112 44 2 1 111 1 110 2.51e-40 142
Msa0861550 MtrunA17_Chr8g0343831 55.000 120 48 1 1 120 1 114 4.00e-40 140
Msa0861550 MtrunA17_Chr6g0487491 55.469 128 46 3 1 119 1 126 6.30e-40 140
Msa0861550 MtrunA17_Chr2g0322521 64.078 103 37 0 15 117 30 132 6.94e-40 143
Msa0861550 MtrunA17_Chr5g0434931 54.128 109 50 0 15 123 36 144 1.20e-39 140
Msa0861550 MtrunA17_Chr5g0434911 56.190 105 46 0 15 119 22 126 3.58e-39 139
Msa0861550 MtrunA17_Chr4g0072751 56.637 113 46 2 1 112 1 111 4.81e-39 140
Msa0861550 MtrunA17_Chr5g0434831 57.143 105 45 0 15 119 8 112 1.08e-38 135
Msa0861550 MtrunA17_Chr7g0220341 56.075 107 45 1 15 119 26 132 2.17e-37 134
Msa0861550 MtrunA17_Chr5g0440781 48.855 131 63 3 15 144 13 140 4.08e-37 130
Msa0861550 MtrunA17_Chr4g0042611 62.222 90 32 1 1 90 1 88 5.55e-37 127
Msa0861550 MtrunA17_Chr4g0068921 52.941 119 56 0 6 124 16 134 8.63e-37 130
Msa0861550 MtrunA17_Chr1g0180391 55.769 104 46 0 15 118 20 123 1.47e-36 130
Msa0861550 MtrunA17_Chr7g0228991 54.286 105 48 0 15 119 30 134 2.13e-36 131
Msa0861550 MtrunA17_Chr5g0440761 48.855 131 63 3 15 144 13 140 2.78e-36 130
Msa0861550 MtrunA17_Chr5g0441141 48.855 131 63 3 15 144 13 140 3.35e-36 130
Msa0861550 MtrunA17_Chr2g0293911 54.622 119 52 1 6 124 18 134 6.38e-36 131
Msa0861550 MtrunA17_Chr5g0434841 54.286 105 48 0 15 119 21 125 1.08e-35 130
Msa0861550 MtrunA17_Chr2g0327821 54.369 103 47 0 15 117 7 109 1.84e-35 127
Msa0861550 MtrunA17_Chr8g0360111 55.000 100 45 0 15 114 26 125 2.81e-35 128
Msa0861550 MtrunA17_Chr5g0441131 42.938 177 87 6 10 184 5 169 1.30e-34 124
Msa0861550 MtrunA17_Chr1g0192411 50.000 118 58 1 6 123 4 120 2.87e-34 129
Msa0861550 MtrunA17_Chr4g0030881 50.442 113 49 1 15 120 8 120 4.71e-34 125
Msa0861550 MtrunA17_Chr4g0013361 54.369 103 46 1 15 116 11 113 1.22e-33 124
Msa0861550 MtrunA17_Chr2g0294811 58.511 94 37 1 1 94 1 92 3.52e-33 118
Msa0861550 MtrunA17_Chr3g0099141 58.427 89 35 1 8 96 36 122 6.55e-33 118
Msa0861550 MtrunA17_Chr8g0342511 64.935 77 27 0 13 89 11 87 8.45e-33 116
Msa0861550 MtrunA17_Chr8g0342531 62.025 79 30 0 13 91 11 89 9.06e-33 119
Msa0861550 MtrunA17_Chr8g0334881 51.456 103 49 1 15 116 11 113 1.21e-32 122
Msa0861550 MtrunA17_Chr2g0323321 56.250 96 39 2 1 96 1 93 1.39e-32 116
Msa0861550 MtrunA17_Chr6g0454921 48.000 125 64 1 2 126 1 124 6.31e-32 117
Msa0861550 MtrunA17_Chr3g0093811 49.565 115 47 2 45 158 13 117 9.23e-32 119
Msa0861550 MtrunA17_Chr4g0008551 50.862 116 50 3 14 128 36 145 3.06e-31 119
Msa0861550 MtrunA17_Chr5g0401731 49.123 114 55 2 12 124 11 122 6.74e-30 115
Msa0861550 MtrunA17_Chr4g0053431 50.909 110 45 2 12 117 1 105 1.01e-29 114
Msa0861550 MtrunA17_Chr8g0342461 60.000 80 31 1 13 91 11 90 2.28e-29 108
Msa0861550 MtrunA17_Chr8g0342471 60.000 80 31 1 13 91 11 90 7.87e-29 107
Msa0861550 MtrunA17_Chr3g0133601 48.113 106 54 1 12 117 33 137 4.47e-28 108
Msa0861550 MtrunA17_Chr7g0238631 52.885 104 46 2 16 118 113 214 2.01e-27 111
Msa0861550 MtrunA17_Chr3g0139671 49.038 104 50 2 16 118 85 186 1.43e-26 109
Msa0861550 MtrunA17_Chr3g0139671 33.981 103 66 2 13 114 30 131 4.11e-14 72.8
Msa0861550 MtrunA17_Chr7g0229101 63.380 71 26 0 45 115 3 73 3.35e-26 102
Msa0861550 MtrunA17_Chr3g0117511 43.590 117 63 2 3 118 170 284 3.45e-26 107
Msa0861550 MtrunA17_Chr4g0058991 46.602 103 52 2 16 117 209 309 8.21e-26 106
Msa0861550 MtrunA17_Chr7g0229131 58.667 75 31 0 45 119 3 77 8.24e-26 100
Msa0861550 MtrunA17_Chr5g0429661 44.660 103 54 2 16 117 122 222 8.34e-26 105
Msa0861550 MtrunA17_Chr1g0157731 48.077 104 51 2 16 118 91 192 9.84e-26 107
Msa0861550 MtrunA17_Chr6g0480581 38.686 137 80 3 16 151 4 137 1.93e-24 99.0
Msa0861550 MtrunA17_Chr5g0434901 56.338 71 31 0 45 115 4 74 3.91e-24 94.7
Msa0861550 MtrunA17_Chr5g0437321 48.148 108 52 3 8 114 12 116 7.35e-24 98.6
Msa0861550 MtrunA17_Chr7g0228531 44.118 102 55 2 16 117 220 319 1.72e-23 99.8
Msa0861550 MtrunA17_Chr4g0042501 46.226 106 54 2 16 120 105 208 3.12e-23 98.6
Msa0861550 MtrunA17_Chr5g0425591 46.667 90 47 1 7 95 2 91 5.84e-23 90.9
Msa0861550 MtrunA17_Chr6g0460661 45.545 101 52 2 13 112 13 111 3.52e-22 90.9
Msa0861550 MtrunA17_Chr5g0417621 44.037 109 58 2 13 120 131 237 3.97e-22 95.9
Msa0861550 MtrunA17_Chr5g0397841 42.708 96 54 1 16 111 110 204 5.89e-21 92.4
Msa0861550 MtrunA17_Chr1g0177901 47.126 87 45 1 26 112 4 89 7.26e-21 88.6
Msa0861550 MtrunA17_Chr6g0453751 47.778 90 38 2 15 95 21 110 7.76e-21 86.3
Msa0861550 MtrunA17_Chr7g0228401 42.969 128 62 5 27 151 290 409 1.86e-20 91.3
Msa0861550 MtrunA17_Chr3g0125801 45.631 103 53 2 16 117 16 116 3.60e-20 88.6
Msa0861550 MtrunA17_Chr7g0228481 41.237 97 55 2 16 112 220 314 1.49e-19 88.2
Msa0861550 MtrunA17_Chr6g0460671 40.187 107 61 2 16 121 99 203 3.64e-19 86.7
Msa0861550 MtrunA17_Chr7g0238651 36.792 106 65 1 14 117 5 110 7.17e-19 85.9
Msa0861550 MtrunA17_Chr7g0254261 43.689 103 55 2 16 117 89 189 1.58e-18 84.7
Msa0861550 MtrunA17_Chr7g0233061 42.000 100 49 3 16 112 180 273 5.14e-18 83.2
Msa0861550 MtrunA17_Chr5g0416341 37.288 118 72 2 7 123 16 132 8.16e-17 80.5
Msa0861550 MtrunA17_Chr1g0193901 50.746 67 32 1 5 70 2 68 9.15e-17 74.7
Msa0861550 MtrunA17_Chr1g0193891 50.746 67 32 1 5 70 2 68 9.15e-17 74.7
Msa0861550 MtrunA17_Chr1g0193871 50.746 67 32 1 5 70 2 68 9.15e-17 74.7
Msa0861550 MtrunA17_Chr1g0193881 50.746 67 32 1 5 70 2 68 9.15e-17 74.7
Msa0861550 MtrunA17_Chr4g0042621 68.889 45 14 0 90 134 14 58 1.81e-16 78.6
Msa0861550 MtrunA17_Chr8g0362231 34.513 113 71 2 7 117 11 122 6.62e-15 74.7
Msa0861550 MtrunA17_Chr7g0247141 59.184 49 17 2 1 48 1 47 1.57e-13 64.3
Msa0861550 MtrunA17_Chr5g0434871 56.818 44 19 0 76 119 2 45 1.95e-13 64.3
Msa0861550 MtrunA17_Chr3g0145551 70.270 37 11 0 94 130 2 38 7.73e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861550 AT5G16770.4 50.149 335 123 11 1 301 1 325 2.81e-92 277
Msa0861550 AT5G16770.3 50.149 335 123 11 1 301 1 325 2.81e-92 277
Msa0861550 AT5G16770.1 50.149 335 123 11 1 301 1 325 8.17e-92 276
Msa0861550 AT5G16770.2 50.149 335 123 11 1 301 1 325 8.17e-92 276
Msa0861550 AT3G02940.2 48.571 315 143 8 1 301 1 310 1.68e-87 264
Msa0861550 AT3G02940.1 48.571 315 143 8 1 301 1 310 2.67e-87 264
Msa0861550 AT3G02940.3 48.571 315 143 8 1 301 1 310 2.67e-87 264
Msa0861550 AT5G10280.1 50.000 278 106 7 1 251 1 272 8.27e-80 245
Msa0861550 AT1G34670.1 75.862 145 30 2 1 145 1 140 6.11e-76 236
Msa0861550 AT5G65230.1 78.195 133 27 1 1 133 1 131 2.30e-74 231
Msa0861550 AT4G21440.1 67.785 149 46 1 1 149 1 147 1.48e-70 222
Msa0861550 AT4G17785.2 38.187 364 147 9 1 301 1 349 1.32e-69 220
Msa0861550 AT4G17785.1 37.912 364 148 9 1 301 1 349 5.77e-69 218
Msa0861550 AT3G61250.1 73.077 130 33 1 1 130 1 128 6.38e-68 214
Msa0861550 AT5G15310.4 68.421 133 40 1 1 133 1 131 3.21e-66 207
Msa0861550 AT5G15310.2 68.421 133 40 1 1 133 1 131 1.04e-65 209
Msa0861550 AT5G15310.1 68.421 133 40 1 1 133 1 131 1.04e-65 209
Msa0861550 AT3G01140.2 67.407 135 42 1 1 135 1 133 1.64e-65 209
Msa0861550 AT3G01140.1 66.667 135 43 1 1 135 44 176 2.79e-64 207
Msa0861550 AT5G54230.1 53.927 191 72 2 15 205 13 187 4.06e-64 205
Msa0861550 AT4G05100.1 68.182 132 39 2 1 131 1 130 1.35e-63 203
Msa0861550 AT4G28110.1 67.939 131 40 1 1 131 1 129 1.52e-62 199
Msa0861550 AT1G57560.2 53.293 167 72 2 13 174 11 176 1.44e-59 192
Msa0861550 AT1G57560.1 66.942 121 40 0 13 133 11 131 2.91e-59 192
Msa0861550 AT5G60890.1 64.615 130 44 1 1 130 1 128 4.16e-59 191
Msa0861550 AT5G26660.1 59.459 148 59 1 13 159 11 158 1.28e-58 191
Msa0861550 AT4G22680.1 66.154 130 42 1 1 130 1 128 3.76e-58 187
Msa0861550 AT1G22640.1 55.629 151 65 1 1 151 1 149 4.78e-58 187
Msa0861550 AT1G66230.1 64.615 130 44 1 1 130 1 128 7.26e-58 187
Msa0861550 AT1G18570.1 59.441 143 57 1 1 143 1 142 9.95e-58 189
Msa0861550 AT4G12350.1 65.385 130 43 1 1 130 1 128 2.34e-57 186
Msa0861550 AT5G61420.2 63.846 130 45 1 1 130 1 128 2.52e-57 189
Msa0861550 AT5G16600.1 64.179 134 46 1 1 134 1 132 3.80e-57 187
Msa0861550 AT1G09540.1 69.492 118 36 0 13 130 11 128 4.17e-57 188
Msa0861550 AT5G07690.1 63.846 130 45 1 1 130 1 128 2.44e-56 185
Msa0861550 AT3G12720.1 68.966 116 36 0 13 128 21 136 4.08e-56 184
Msa0861550 AT4G34990.1 62.308 130 47 1 1 130 1 128 4.20e-56 182
Msa0861550 AT4G09460.1 62.791 129 46 1 1 129 1 127 4.96e-56 181
Msa0861550 AT4G38620.1 43.779 217 100 6 1 216 1 196 1.60e-55 181
Msa0861550 AT1G74080.1 61.654 133 49 1 1 133 1 131 2.19e-55 182
Msa0861550 AT5G07700.1 66.379 116 39 0 15 130 13 128 2.87e-55 182
Msa0861550 AT5G07700.2 66.379 116 39 0 15 130 13 128 2.87e-55 182
Msa0861550 AT4G01680.3 66.942 121 40 0 13 133 11 131 4.67e-55 179
Msa0861550 AT2G16720.1 61.240 129 48 1 1 129 1 127 7.10e-55 179
Msa0861550 AT1G35515.1 60.938 128 48 1 1 128 1 126 1.47e-54 177
Msa0861550 AT4G01680.1 66.942 121 40 0 13 133 11 131 2.45e-54 180
Msa0861550 AT3G13540.1 61.417 127 47 1 4 130 15 139 3.90e-54 177
Msa0861550 AT3G23250.1 67.797 118 36 1 1 118 1 116 5.38e-54 177
Msa0861550 AT2G31180.1 46.734 199 83 4 1 182 1 193 1.71e-53 175
Msa0861550 AT1G06180.1 68.644 118 35 1 1 118 1 116 3.36e-53 174
Msa0861550 AT5G62320.1 59.701 134 45 2 3 129 4 135 8.98e-53 173
Msa0861550 AT5G56110.1 59.231 130 51 1 1 130 1 128 4.20e-52 174
Msa0861550 AT1G56160.1 38.511 309 153 9 3 299 5 288 7.12e-52 172
Msa0861550 AT3G28910.1 62.097 124 45 1 1 124 1 122 1.13e-51 173
Msa0861550 AT5G14340.1 60.150 133 51 1 1 133 13 143 1.27e-51 171
Msa0861550 AT3G47600.1 62.810 121 43 1 1 121 1 119 2.60e-51 172
Msa0861550 AT4G01680.2 60.902 133 40 1 13 133 11 143 6.67e-51 171
Msa0861550 AT1G74430.1 59.848 132 51 1 1 132 1 130 1.72e-50 168
Msa0861550 AT3G13890.2 60.465 129 51 0 13 141 11 139 3.66e-50 170
Msa0861550 AT1G08810.1 55.102 147 61 2 1 147 1 142 4.99e-50 167
Msa0861550 AT5G62470.2 61.157 121 45 1 1 121 1 119 7.58e-50 169
Msa0861550 AT1G63910.1 58.333 132 55 0 13 144 11 142 9.33e-50 169
Msa0861550 AT1G74650.1 61.983 121 44 1 1 121 1 119 2.55e-49 167
Msa0861550 AT1G18710.1 58.519 135 54 1 1 135 1 133 3.89e-49 164
Msa0861550 AT1G79180.1 65.254 118 39 1 3 120 5 120 4.74e-49 165
Msa0861550 AT5G49330.1 61.864 118 43 1 1 118 1 116 2.06e-48 165
Msa0861550 AT5G62470.1 61.157 121 44 2 1 121 1 118 2.87e-48 165
Msa0861550 AT1G16490.1 64.655 116 39 1 3 118 5 118 1.69e-47 160
Msa0861550 AT3G62610.1 61.864 118 43 1 1 118 1 116 3.17e-47 162
Msa0861550 AT3G13890.1 56.522 138 51 1 13 141 11 148 4.65e-47 162
Msa0861550 AT2G47460.1 61.864 118 43 1 1 118 1 116 4.88e-47 162
Msa0861550 AT5G14750.1 58.261 115 48 0 4 118 6 120 7.85e-47 156
Msa0861550 AT3G12820.1 62.712 118 42 1 3 120 5 120 9.33e-47 157
Msa0861550 AT5G40330.1 62.500 104 39 0 15 118 13 116 7.46e-46 154
Msa0861550 AT5G12870.1 63.303 109 40 0 13 121 17 125 4.10e-45 154
Msa0861550 AT3G28470.1 55.319 141 61 1 1 141 1 139 4.33e-45 155
Msa0861550 AT2G36890.1 57.364 129 52 2 1 128 1 127 5.16e-45 155
Msa0861550 AT2G36890.2 57.364 129 52 2 1 128 42 168 7.35e-45 155
Msa0861550 AT5G23000.1 58.333 120 47 2 1 119 1 118 1.44e-44 154
Msa0861550 AT5G65790.1 60.000 120 45 2 1 119 1 118 2.32e-44 155
Msa0861550 AT5G06100.1 41.667 204 107 6 11 210 29 224 2.70e-44 157
Msa0861550 AT3G11440.2 61.165 103 40 0 15 117 42 144 7.52e-44 155
Msa0861550 AT5G06100.5 41.667 204 107 6 11 210 29 224 1.04e-43 156
Msa0861550 AT5G06100.2 41.667 204 107 6 11 210 29 224 1.04e-43 156
Msa0861550 AT5G06100.3 41.667 204 107 6 11 210 29 224 1.04e-43 156
Msa0861550 AT5G06100.4 41.667 204 107 6 11 210 29 224 1.04e-43 156
Msa0861550 AT5G57620.1 59.167 120 46 2 1 119 1 118 2.06e-43 151
Msa0861550 AT5G40350.1 59.259 108 44 0 15 122 18 125 2.62e-43 148
Msa0861550 AT3G49690.1 59.167 120 46 2 1 119 1 118 2.91e-43 150
Msa0861550 AT3G11440.3 61.165 103 40 0 15 117 42 144 3.10e-43 155
Msa0861550 AT3G11440.4 61.165 103 40 0 15 117 42 144 3.10e-43 155
Msa0861550 AT3G11440.1 61.165 103 40 0 15 117 42 144 3.10e-43 155
Msa0861550 AT3G24310.1 60.194 103 41 0 15 117 19 121 3.15e-43 149
Msa0861550 AT3G27810.1 60.377 106 42 0 15 120 21 126 3.57e-43 148
Msa0861550 AT3G27920.1 54.622 119 53 1 2 119 1 119 4.34e-43 147
Msa0861550 AT3G01530.1 57.391 115 48 1 4 118 16 129 4.56e-43 147
Msa0861550 AT3G08500.1 63.208 106 39 0 13 118 29 134 5.22e-43 150
Msa0861550 AT5G35550.1 64.078 103 37 0 16 118 16 118 6.35e-43 148
Msa0861550 AT3G30210.1 60.784 102 40 0 15 116 28 129 7.39e-43 149
Msa0861550 AT1G79180.2 50.331 151 40 2 3 120 5 153 7.73e-43 150
Msa0861550 AT4G37780.1 55.833 120 50 2 1 119 1 118 9.10e-43 149
Msa0861550 AT2G26960.1 56.667 120 49 2 6 123 10 128 2.32e-42 151
Msa0861550 AT4G13480.1 59.223 103 42 0 15 117 7 109 2.78e-42 146
Msa0861550 AT2G32460.1 52.756 127 59 1 11 137 15 140 3.04e-42 152
Msa0861550 AT2G32460.2 52.756 127 59 1 11 137 3 128 3.16e-42 152
Msa0861550 AT5G55020.1 56.897 116 49 1 8 123 20 134 7.21e-42 151
Msa0861550 AT5G52600.1 59.223 103 42 0 15 117 13 115 2.55e-41 142
Msa0861550 AT5G26660.2 59.649 114 45 1 47 159 14 127 3.33e-41 145
Msa0861550 AT1G48000.1 51.515 132 62 1 15 144 33 164 3.64e-41 143
Msa0861550 AT1G25340.1 50.000 122 61 0 8 129 12 133 3.81e-41 144
Msa0861550 AT4G26930.1 59.434 106 43 0 11 116 16 121 4.60e-41 147
Msa0861550 AT3G48920.1 58.654 104 43 0 13 116 17 120 5.55e-41 143
Msa0861550 AT5G52260.1 57.265 117 50 0 4 120 2 118 2.56e-40 142
Msa0861550 AT4G25560.1 58.182 110 46 0 11 120 7 116 1.53e-39 140
Msa0861550 AT2G47190.1 50.413 121 59 1 4 124 11 130 3.84e-39 139
Msa0861550 AT1G68320.1 53.636 110 51 0 15 124 20 129 8.41e-39 138
Msa0861550 AT1G66370.1 56.311 103 45 0 15 117 9 111 1.96e-37 134
Msa0861550 AT5G59780.3 52.830 106 50 0 15 120 9 114 4.58e-37 132
Msa0861550 AT3G46130.1 52.830 106 50 0 15 120 10 115 7.49e-37 132
Msa0861550 AT1G25340.2 47.541 122 59 1 8 129 12 128 1.51e-36 132
Msa0861550 AT1G25340.3 47.541 122 59 1 8 129 12 128 2.53e-36 132
Msa0861550 AT3G06490.1 54.237 118 54 0 7 124 12 129 9.19e-36 131
Msa0861550 AT3G53200.1 56.311 103 45 0 15 117 10 112 1.90e-35 128
Msa0861550 AT1G66380.1 59.223 103 42 0 15 117 9 111 3.00e-35 124
Msa0861550 AT5G49620.1 52.586 116 55 0 9 124 21 136 4.44e-35 129
Msa0861550 AT2G26950.1 41.954 174 89 5 1 162 1 174 7.22e-35 130
Msa0861550 AT3G60460.1 53.398 103 47 1 15 116 12 114 7.03e-34 125
Msa0861550 AT1G56650.1 58.252 103 43 0 15 117 9 111 1.04e-33 124
Msa0861550 AT1G66390.1 57.282 103 44 0 15 117 9 111 3.70e-33 122
Msa0861550 AT3G47600.2 68.000 75 24 0 47 121 39 113 2.82e-32 122
Msa0861550 AT5G49620.2 46.923 130 55 1 9 124 21 150 2.22e-31 119
Msa0861550 AT1G18960.1 48.333 120 53 3 14 130 8 121 3.02e-31 119
Msa0861550 AT5G14750.3 62.821 78 26 1 41 118 12 86 6.81e-31 114
Msa0861550 AT3G12820.2 69.014 71 22 0 50 120 2 72 1.08e-30 114
Msa0861550 AT5G35550.2 65.385 78 27 0 41 118 44 121 1.43e-30 116
Msa0861550 AT1G22640.3 54.945 91 41 0 61 151 2 92 6.22e-30 112
Msa0861550 AT3G27810.2 63.514 74 27 0 47 120 4 77 2.11e-29 110
Msa0861550 AT5G40350.2 61.842 76 29 0 47 122 5 80 3.30e-29 110
Msa0861550 AT4G37260.1 51.887 106 50 1 12 117 9 113 9.70e-29 112
Msa0861550 AT3G55730.1 50.893 112 46 2 14 121 54 160 1.72e-28 113
Msa0861550 AT2G39880.1 50.450 111 46 2 11 117 45 150 2.99e-28 112
Msa0861550 AT2G23290.1 51.887 106 50 1 12 117 9 113 3.29e-28 110
Msa0861550 AT3G46130.3 60.000 75 30 0 46 120 9 83 3.89e-28 108
Msa0861550 AT5G02320.3 52.885 104 46 2 16 118 67 168 5.66e-28 113
Msa0861550 AT5G02320.1 52.885 104 46 2 16 118 127 228 5.66e-28 113
Msa0861550 AT5G02320.2 52.885 104 46 2 16 118 127 228 5.66e-28 113
Msa0861550 AT5G59780.2 60.811 74 29 0 47 120 20 93 7.42e-28 107
Msa0861550 AT3G46130.4 60.811 74 29 0 47 120 20 93 9.19e-28 108
Msa0861550 AT3G53200.2 64.789 71 25 0 47 117 9 79 1.45e-27 106
Msa0861550 AT5G40360.1 39.456 147 75 4 16 162 158 290 2.90e-27 109
Msa0861550 AT1G71030.1 51.111 90 43 1 40 129 7 95 4.75e-27 105
Msa0861550 AT1G71030.2 54.545 77 35 0 53 129 5 81 9.91e-27 103
Msa0861550 AT3G27785.1 47.059 102 53 1 16 117 189 289 1.18e-26 108
Msa0861550 AT3G09370.2 48.718 117 53 3 16 127 135 249 1.40e-26 109
Msa0861550 AT3G09370.1 48.718 117 53 3 16 127 130 244 1.45e-26 109
Msa0861550 AT3G09370.3 48.718 117 53 3 16 127 143 257 1.69e-26 109
Msa0861550 AT3G09230.1 46.364 110 50 2 14 119 53 157 1.75e-26 107
Msa0861550 AT4G18770.1 41.739 115 66 1 16 130 217 330 2.08e-26 108
Msa0861550 AT3G50060.1 49.038 104 52 1 14 117 4 106 7.09e-26 104
Msa0861550 AT5G58850.1 46.602 103 52 2 16 117 105 205 1.60e-25 105
Msa0861550 AT4G32730.5 48.077 104 51 2 16 118 87 188 1.77e-25 107
Msa0861550 AT4G32730.5 33.981 103 66 2 13 114 32 133 1.49e-14 74.7
Msa0861550 AT4G32730.4 48.077 104 51 2 16 118 87 188 1.77e-25 107
Msa0861550 AT4G32730.4 33.981 103 66 2 13 114 32 133 1.49e-14 74.7
Msa0861550 AT4G32730.3 48.077 104 51 2 16 118 87 188 1.77e-25 107
Msa0861550 AT4G32730.3 33.981 103 66 2 13 114 32 133 1.49e-14 74.7
Msa0861550 AT4G32730.2 48.077 104 51 2 16 118 87 188 1.77e-25 107
Msa0861550 AT4G32730.2 33.981 103 66 2 13 114 32 133 1.49e-14 74.7
Msa0861550 AT4G32730.1 48.077 104 51 2 16 118 87 188 1.81e-25 106
Msa0861550 AT4G32730.1 33.981 103 66 2 13 114 32 133 1.43e-14 74.7
Msa0861550 AT5G67300.1 51.456 103 47 2 16 117 6 106 2.44e-25 103
Msa0861550 AT5G11510.3 45.045 111 57 2 16 123 81 190 2.84e-25 106
Msa0861550 AT5G11510.3 30.097 103 70 2 13 114 26 127 5.32e-11 63.9
Msa0861550 AT5G11510.1 45.045 111 57 2 16 123 81 190 2.84e-25 106
Msa0861550 AT5G11510.1 30.097 103 70 2 13 114 26 127 5.32e-11 63.9
Msa0861550 AT5G11510.4 45.045 111 57 2 16 123 81 190 2.84e-25 106
Msa0861550 AT5G11510.4 30.097 103 70 2 13 114 26 127 5.32e-11 63.9
Msa0861550 AT5G11050.1 45.631 103 53 2 16 117 105 205 3.01e-25 104
Msa0861550 AT5G11510.2 45.045 111 57 2 16 123 81 190 3.34e-25 105
Msa0861550 AT5G11510.2 30.097 103 70 2 13 114 26 127 4.41e-11 63.9
Msa0861550 AT5G11510.5 45.045 111 57 2 16 123 81 190 4.22e-25 105
Msa0861550 AT5G11510.5 30.097 103 70 2 13 114 26 127 4.82e-11 63.9
Msa0861550 AT1G66380.3 64.384 73 26 0 45 117 6 78 5.52e-25 97.1
Msa0861550 AT3G23250.2 70.690 58 17 0 61 118 2 59 3.57e-24 98.2
Msa0861550 AT1G17950.1 41.880 117 61 3 16 131 5 115 8.15e-23 95.1
Msa0861550 AT1G69560.1 44.340 106 56 2 16 120 107 210 3.32e-22 95.1
Msa0861550 AT1G69560.2 44.340 106 56 2 16 120 123 226 3.76e-22 95.1
Msa0861550 AT5G14750.4 62.069 58 22 0 61 118 2 59 5.29e-22 90.1
Msa0861550 AT5G14750.2 62.069 58 22 0 61 118 2 59 5.29e-22 90.1
Msa0861550 AT3G29020.1 39.200 125 69 2 16 134 65 188 1.22e-21 91.7
Msa0861550 AT1G26780.1 44.340 106 56 2 16 120 98 201 3.00e-21 91.7
Msa0861550 AT1G66380.2 47.917 96 49 1 15 109 9 104 4.26e-21 86.7
Msa0861550 AT1G26780.2 44.340 106 56 2 16 120 98 201 5.29e-21 92.0
Msa0861550 AT3G29020.2 39.200 125 69 2 16 134 67 190 8.00e-21 90.9
Msa0861550 AT1G73410.1 42.735 117 58 3 16 131 6 114 8.99e-21 89.4
Msa0861550 AT1G73410.2 44.340 106 56 2 16 120 6 109 1.92e-20 87.8
Msa0861550 AT5G61420.1 72.917 48 13 0 83 130 2 49 7.85e-20 87.8
Msa0861550 AT4G33450.1 40.385 104 59 2 15 117 18 119 9.87e-20 86.7
Msa0861550 AT2G25230.1 40.541 111 61 3 19 126 29 137 1.41e-19 85.9
Msa0861550 AT5G17800.1 39.130 115 66 2 9 120 83 196 2.40e-19 87.0
Msa0861550 AT4G00540.2 42.342 111 58 3 15 121 102 210 9.50e-19 86.3
Msa0861550 AT4G00540.1 42.342 111 58 3 15 121 100 208 1.53e-18 85.9
Msa0861550 AT2G37630.1 37.736 106 64 1 14 117 2 107 3.52e-18 84.3
Msa0861550 AT5G15310.3 72.727 44 12 0 90 133 9 52 4.80e-18 82.0
Msa0861550 AT1G14350.2 41.414 99 57 1 19 117 28 125 5.69e-17 81.3
Msa0861550 AT1G14350.1 41.414 99 57 1 19 117 28 125 5.69e-17 81.3
Msa0861550 AT2G02820.3 35.593 118 75 1 6 123 20 136 7.68e-17 80.1
Msa0861550 AT2G02820.1 37.500 112 69 1 6 117 20 130 1.48e-16 80.1
Msa0861550 AT2G02820.2 40.404 99 58 1 19 117 33 130 1.48e-16 80.1
Msa0861550 AT4G28110.2 69.048 42 13 0 90 131 4 45 8.30e-16 74.7
Msa0861550 AT5G40430.1 46.032 63 34 0 50 112 86 148 1.42e-15 75.5
Msa0861550 AT1G74650.3 69.767 43 13 0 79 121 1 43 1.47e-14 72.4
Msa0861550 AT4G25560.2 64.583 48 17 0 73 120 3 50 1.94e-14 71.6
Msa0861550 AT5G39700.1 34.234 111 72 1 2 112 42 151 4.77e-14 69.7
Msa0861550 AT3G28910.2 63.043 46 17 0 79 124 1 46 5.91e-14 70.5
Msa0861550 AT1G22640.2 46.774 62 33 0 90 151 16 77 1.53e-13 68.2
Msa0861550 AT5G14340.2 61.364 44 17 0 90 133 10 53 3.29e-13 67.4
Msa0861550 AT5G59780.1 56.522 46 20 0 75 120 4 49 3.72e-13 67.0
Msa0861550 AT3G46130.2 56.522 46 20 0 75 120 4 49 4.92e-13 67.0
Msa0861550 AT1G74430.2 51.852 54 26 0 79 132 8 61 2.01e-12 65.5

Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAATTTGGTGAACAAAT+TGG 0.188234 5_4:-60895833 Msa0861550:CDS
ATCAATTTACATTCAGTTCT+TGG 0.192562 5_4:-60897028 Msa0861550:CDS
TTTGAGTGCTCTCAGAAATT+TGG 0.230778 5_4:-60895845 Msa0861550:CDS
TTGAGAAGAAATACCAATAT+TGG 0.243128 5_4:+60895928 None:intergenic
ATGATGCAAATGATGCTTAT+TGG 0.261081 5_4:-60895634 Msa0861550:CDS
AAGTTTGGTAAATGATGTTT+TGG 0.283929 5_4:-60895987 Msa0861550:CDS
TTCACTTCTCCCACAAAGTT+TGG 0.285823 5_4:-60896002 Msa0861550:CDS
CTTCCAACAGCTTTGAAACT+TGG 0.298815 5_4:-60895673 Msa0861550:CDS
CTGTTCAATCCTGCAAGCTT+TGG 0.320153 5_4:+60897142 None:intergenic
TAAGATGGAATAATTATCTA+AGG 0.371636 5_4:-60897099 Msa0861550:CDS
GTTCTTGGCCTGTGTGTCAC+TGG 0.373245 5_4:+60896127 None:intergenic
AGAGCTCTTCCAAAGCTTGC+AGG 0.374930 5_4:-60897151 Msa0861550:CDS
ACATAAATAATAATGCTCTA+AGG 0.382840 5_4:-60896033 Msa0861550:CDS
ATCAAATTCACTTCCAAAGC+TGG 0.387270 5_4:-60895783 Msa0861550:CDS
TCAGTTTCACCTCAACGTTC+AGG 0.388670 5_4:-60895758 Msa0861550:CDS
ATTATTATTTATGTCACAAT+TGG 0.389221 5_4:+60896042 None:intergenic
GCTATAGCAACTCATCTTCC+AGG 0.393434 5_4:-60896223 Msa0861550:CDS
TTTGTTGTAGATTACTAAGA+AGG 0.414081 5_4:+60896092 None:intergenic
ATTTCATTATCAGTCCTTCC+TGG 0.418769 5_4:+60896205 None:intergenic
TTCCAACAGCTTTGAAACTT+GGG 0.419224 5_4:-60895672 Msa0861550:CDS
AAGCCACTTTCATCATTGCT+TGG 0.426214 5_4:+60897256 None:intergenic
AGAAGAAGATAAAATATTAG+TGG 0.429587 5_4:-60897206 Msa0861550:CDS
AGGTCTAGGTGATCTGTTCT+TGG 0.441362 5_4:+60896112 None:intergenic
TTATCTTCTTCTGGACTCCA+TGG 0.442300 5_4:+60897217 None:intergenic
ACATCATTTACCAAACTTTG+TGG 0.442943 5_4:+60895992 None:intergenic
TCCCCAAGTTTCAAAGCTGT+TGG 0.451141 5_4:+60895670 None:intergenic
GGTGAAACTGAAACCAGCTT+TGG 0.451442 5_4:+60895770 None:intergenic
CATCATTTACCAAACTTTGT+GGG 0.451886 5_4:+60895993 None:intergenic
AGAAACATGGTCATGGAAGT+TGG 0.468034 5_4:-60897174 Msa0861550:CDS
GAAAGAGTTGTAGACTAAGA+TGG 0.479581 5_4:-60897114 Msa0861550:CDS
TCAACGTTCAGGAACAGTTA+AGG 0.503558 5_4:-60895747 Msa0861550:CDS
GTAGATTACTAAGAAGGTCT+AGG 0.504439 5_4:+60896098 None:intergenic
TCCAACAGCTTTGAAACTTG+GGG 0.538039 5_4:-60895671 Msa0861550:CDS
GTGGTAGTAATTGCTGAAGA+GGG 0.540930 5_4:+60895873 None:intergenic
TGTGGTAGTAATTGCTGAAG+AGG 0.554185 5_4:+60895872 None:intergenic
TGAAGAAGAAGAAGGGTCCA+TGG 0.569102 5_4:-60897234 Msa0861550:CDS
ACACCAAGCAATGATGAAAG+TGG 0.569545 5_4:-60897259 Msa0861550:CDS
CTAAGGCCTGATATTAGAAG+AGG 0.576748 5_4:-60897082 Msa0861550:CDS
CACATTCAGAAACATGGTCA+TGG 0.577172 5_4:-60897181 Msa0861550:CDS
AAGTGGCTTGAAGAAGAAGA+AGG 0.577444 5_4:-60897242 Msa0861550:CDS
TGAGAGCACTCAAATTCTTG+TGG 0.582345 5_4:+60895854 None:intergenic
CTTGCAGGATTGAACAGATG+TGG 0.598027 5_4:-60897136 Msa0861550:CDS
TGGTAGTAATTGCTGAAGAG+GGG 0.633640 5_4:+60895874 None:intergenic
CGTTCAGGAACAGTTAAGGT+AGG 0.636839 5_4:-60895743 Msa0861550:CDS
AGTGGCTTGAAGAAGAAGAA+GGG 0.640314 5_4:-60897241 Msa0861550:CDS
GGTTAGATCCAGTGACACAC+AGG 0.640850 5_4:-60896135 Msa0861550:CDS
TAGCAACTCATCTTCCAGGA+AGG 0.644421 5_4:-60896219 Msa0861550:CDS
TTAACTGTTCCTGAACGTTG+AGG 0.645603 5_4:+60895749 None:intergenic
GTGGATCACATTCAGAAACA+TGG 0.652058 5_4:-60897187 Msa0861550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTAAATTATTTTTTTTTTTG+AGG + chr5_4:60895982-60896001 None:intergenic 10.0%
!!! AAAAAAAATAGTTTTAATTG+TGG + chr5_4:60896086-60896105 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG - chr5_4:60896692-60896711 Msa0861550:intron 10.0%
!!! CTAAATTATTTTTTTTTTTG+AGG + chr5_4:60895982-60896001 None:intergenic 10.0%
!!! AAAAAAAATAGTTTTAATTG+TGG + chr5_4:60896086-60896105 None:intergenic 10.0%
!!! ATAATGAAATAAAGAATTTT+TGG - chr5_4:60896692-60896711 Msa0861550:intron 10.0%
!! TAAATATTCAGCTATAAATA+AGG - chr5_4:60896107-60896126 Msa0861550:CDS 15.0%
!! AAATATTCAGCTATAAATAA+GGG - chr5_4:60896108-60896127 Msa0861550:CDS 15.0%
!! TTCATATTTCTTTAATAATC+CGG + chr5_4:60896238-60896257 None:intergenic 15.0%
!! TTATAATATGCAATAACAAA+TGG - chr5_4:60896434-60896453 Msa0861550:intron 15.0%
!! ATTATTATTTATGTCACAAT+TGG + chr5_4:60896845-60896864 None:intergenic 15.0%
!! TAAATATTCAGCTATAAATA+AGG - chr5_4:60896107-60896126 Msa0861550:CDS 15.0%
!! AAATATTCAGCTATAAATAA+GGG - chr5_4:60896108-60896127 Msa0861550:CDS 15.0%
!! TTCATATTTCTTTAATAATC+CGG + chr5_4:60896238-60896257 None:intergenic 15.0%
!! TTATAATATGCAATAACAAA+TGG - chr5_4:60896434-60896453 Msa0861550:intron 15.0%
!! ATTATTATTTATGTCACAAT+TGG + chr5_4:60896845-60896864 None:intergenic 15.0%
!!! ACTAATATTTTATCTTCTTC+TGG + chr5_4:60895679-60895698 None:intergenic 20.0%
!! AGAAGAAGATAAAATATTAG+TGG - chr5_4:60895678-60895697 Msa0861550:CDS 20.0%
!! TAAGATGGAATAATTATCTA+AGG - chr5_4:60895785-60895804 Msa0861550:CDS 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG - chr5_4:60895894-60895913 Msa0861550:CDS 20.0%
!!! TTTTTTGTCAAATAATCTAG+TGG + chr5_4:60896536-60896555 None:intergenic 20.0%
!!! ATGAATATGGTTGATTTATT+AGG - chr5_4:60896632-60896651 Msa0861550:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG - chr5_4:60896851-60896870 Msa0861550:intron 20.0%
!!! AACATACAAAGTTTTTATGA+TGG - chr5_4:60896931-60896950 Msa0861550:intron 20.0%
!!! ACTAATATTTTATCTTCTTC+TGG + chr5_4:60895679-60895698 None:intergenic 20.0%
!! AGAAGAAGATAAAATATTAG+TGG - chr5_4:60895678-60895697 Msa0861550:CDS 20.0%
!! TAAGATGGAATAATTATCTA+AGG - chr5_4:60895785-60895804 Msa0861550:CDS 20.0%
!!! ATCATTATTTCTTTGATTCA+TGG - chr5_4:60895894-60895913 Msa0861550:CDS 20.0%
!!! TTTTTTGTCAAATAATCTAG+TGG + chr5_4:60896536-60896555 None:intergenic 20.0%
!!! ATGAATATGGTTGATTTATT+AGG - chr5_4:60896632-60896651 Msa0861550:intron 20.0%
!! ACATAAATAATAATGCTCTA+AGG - chr5_4:60896851-60896870 Msa0861550:intron 20.0%
!!! AACATACAAAGTTTTTATGA+TGG - chr5_4:60896931-60896950 Msa0861550:intron 20.0%
!! AATTTTCCTCTTCTAATATC+AGG + chr5_4:60895811-60895830 None:intergenic 25.0%
! ATCAATTTACATTCAGTTCT+TGG - chr5_4:60895856-60895875 Msa0861550:CDS 25.0%
!! TACTTTTGAATGTTCTTATC+CGG - chr5_4:60896216-60896235 Msa0861550:CDS 25.0%
!! AATATGGTTGATTTATTAGG+TGG - chr5_4:60896635-60896654 Msa0861550:intron 25.0%
!! ATATGGTTGATTTATTAGGT+GGG - chr5_4:60896636-60896655 Msa0861550:intron 25.0%
! AAGAAAAAGCTAATGCAAAT+GGG - chr5_4:60896727-60896746 Msa0861550:intron 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG + chr5_4:60896795-60896814 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG - chr5_4:60896897-60896916 Msa0861550:intron 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG - chr5_4:60896898-60896917 Msa0861550:intron 25.0%
!! TTTTATGATGGTTCCAATAT+TGG - chr5_4:60896943-60896962 Msa0861550:intron 25.0%
! TTGAGAAGAAATACCAATAT+TGG + chr5_4:60896959-60896978 None:intergenic 25.0%
!! AATTTTCCTCTTCTAATATC+AGG + chr5_4:60895811-60895830 None:intergenic 25.0%
! ATCAATTTACATTCAGTTCT+TGG - chr5_4:60895856-60895875 Msa0861550:CDS 25.0%
!! TACTTTTGAATGTTCTTATC+CGG - chr5_4:60896216-60896235 Msa0861550:CDS 25.0%
!! AATATGGTTGATTTATTAGG+TGG - chr5_4:60896635-60896654 Msa0861550:intron 25.0%
!! ATATGGTTGATTTATTAGGT+GGG - chr5_4:60896636-60896655 Msa0861550:intron 25.0%
! AAGAAAAAGCTAATGCAAAT+GGG - chr5_4:60896727-60896746 Msa0861550:intron 25.0%
!! TTTGTTGTAGATTACTAAGA+AGG + chr5_4:60896795-60896814 None:intergenic 25.0%
!! AAGTTTGGTAAATGATGTTT+TGG - chr5_4:60896897-60896916 Msa0861550:intron 25.0%
!! AGTTTGGTAAATGATGTTTT+GGG - chr5_4:60896898-60896917 Msa0861550:intron 25.0%
!! TTTTATGATGGTTCCAATAT+TGG - chr5_4:60896943-60896962 Msa0861550:intron 25.0%
! TTGAGAAGAAATACCAATAT+TGG + chr5_4:60896959-60896978 None:intergenic 25.0%
!! ACATTTTAAGTGTGAAGAAG+TGG + chr5_4:60896503-60896522 None:intergenic 30.0%
CGTGATTGTGAATATGAATA+TGG - chr5_4:60896619-60896638 Msa0861550:intron 30.0%
GAAGAAAAAGCTAATGCAAA+TGG - chr5_4:60896726-60896745 Msa0861550:intron 30.0%
AGAAAAAGCTAATGCAAATG+GGG - chr5_4:60896728-60896747 Msa0861550:intron 30.0%
CATCATTTACCAAACTTTGT+GGG + chr5_4:60896894-60896913 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG + chr5_4:60896895-60896914 None:intergenic 30.0%
! GCTTCAAAGTTTTGCAAATT+AGG + chr5_4:60896991-60897010 None:intergenic 30.0%
! CAGAAATTTGGTGAACAAAT+TGG - chr5_4:60897051-60897070 Msa0861550:CDS 30.0%
ATGATGCAAATGATGCTTAT+TGG - chr5_4:60897250-60897269 Msa0861550:CDS 30.0%
!! ACATTTTAAGTGTGAAGAAG+TGG + chr5_4:60896503-60896522 None:intergenic 30.0%
CGTGATTGTGAATATGAATA+TGG - chr5_4:60896619-60896638 Msa0861550:intron 30.0%
GAAGAAAAAGCTAATGCAAA+TGG - chr5_4:60896726-60896745 Msa0861550:intron 30.0%
AGAAAAAGCTAATGCAAATG+GGG - chr5_4:60896728-60896747 Msa0861550:intron 30.0%
CATCATTTACCAAACTTTGT+GGG + chr5_4:60896894-60896913 None:intergenic 30.0%
ACATCATTTACCAAACTTTG+TGG + chr5_4:60896895-60896914 None:intergenic 30.0%
! GCTTCAAAGTTTTGCAAATT+AGG + chr5_4:60896991-60897010 None:intergenic 30.0%
! CAGAAATTTGGTGAACAAAT+TGG - chr5_4:60897051-60897070 Msa0861550:CDS 30.0%
ATGATGCAAATGATGCTTAT+TGG - chr5_4:60897250-60897269 Msa0861550:CDS 30.0%
GAAAGAGTTGTAGACTAAGA+TGG - chr5_4:60895770-60895789 Msa0861550:CDS 35.0%
ATTTCATTATCAGTCCTTCC+TGG + chr5_4:60896682-60896701 None:intergenic 35.0%
GTAGATTACTAAGAAGGTCT+AGG + chr5_4:60896789-60896808 None:intergenic 35.0%
TTTGAGTGCTCTCAGAAATT+TGG - chr5_4:60897039-60897058 Msa0861550:CDS 35.0%
ATCAAATTCACTTCCAAAGC+TGG - chr5_4:60897101-60897120 Msa0861550:CDS 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG - chr5_4:60897212-60897231 Msa0861550:CDS 35.0%
GAAAGAGTTGTAGACTAAGA+TGG - chr5_4:60895770-60895789 Msa0861550:CDS 35.0%
ATTTCATTATCAGTCCTTCC+TGG + chr5_4:60896682-60896701 None:intergenic 35.0%
GTAGATTACTAAGAAGGTCT+AGG + chr5_4:60896789-60896808 None:intergenic 35.0%
TTTGAGTGCTCTCAGAAATT+TGG - chr5_4:60897039-60897058 Msa0861550:CDS 35.0%
ATCAAATTCACTTCCAAAGC+TGG - chr5_4:60897101-60897120 Msa0861550:CDS 35.0%
!! TTCCAACAGCTTTGAAACTT+GGG - chr5_4:60897212-60897231 Msa0861550:CDS 35.0%
ACACCAAGCAATGATGAAAG+TGG - chr5_4:60895625-60895644 Msa0861550:CDS 40.0%
! AAGCCACTTTCATCATTGCT+TGG + chr5_4:60895631-60895650 None:intergenic 40.0%
AAGTGGCTTGAAGAAGAAGA+AGG - chr5_4:60895642-60895661 Msa0861550:CDS 40.0%
AGTGGCTTGAAGAAGAAGAA+GGG - chr5_4:60895643-60895662 Msa0861550:CDS 40.0%
TTATCTTCTTCTGGACTCCA+TGG + chr5_4:60895670-60895689 None:intergenic 40.0%
GTGGATCACATTCAGAAACA+TGG - chr5_4:60895697-60895716 Msa0861550:CDS 40.0%
CACATTCAGAAACATGGTCA+TGG - chr5_4:60895703-60895722 Msa0861550:CDS 40.0%
AGAAACATGGTCATGGAAGT+TGG - chr5_4:60895710-60895729 Msa0861550:CDS 40.0%
CTAAGGCCTGATATTAGAAG+AGG - chr5_4:60895802-60895821 Msa0861550:CDS 40.0%
! CTGCGTTCGAACATAGTTTT+AGG + chr5_4:60896462-60896481 None:intergenic 40.0%
CTAAAACTATGTTCGAACGC+AGG - chr5_4:60896460-60896479 Msa0861550:intron 40.0%
TTCACTTCTCCCACAAAGTT+TGG - chr5_4:60896882-60896901 Msa0861550:intron 40.0%
TGGTAGTAATTGCTGAAGAG+GGG + chr5_4:60897013-60897032 None:intergenic 40.0%
GTGGTAGTAATTGCTGAAGA+GGG + chr5_4:60897014-60897033 None:intergenic 40.0%
TGTGGTAGTAATTGCTGAAG+AGG + chr5_4:60897015-60897034 None:intergenic 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG + chr5_4:60897033-60897052 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG + chr5_4:60897138-60897157 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG - chr5_4:60897137-60897156 Msa0861550:CDS 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG - chr5_4:60897211-60897230 Msa0861550:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG - chr5_4:60897213-60897232 Msa0861550:CDS 40.0%
ACACCAAGCAATGATGAAAG+TGG - chr5_4:60895625-60895644 Msa0861550:CDS 40.0%
! AAGCCACTTTCATCATTGCT+TGG + chr5_4:60895631-60895650 None:intergenic 40.0%
AAGTGGCTTGAAGAAGAAGA+AGG - chr5_4:60895642-60895661 Msa0861550:CDS 40.0%
AGTGGCTTGAAGAAGAAGAA+GGG - chr5_4:60895643-60895662 Msa0861550:CDS 40.0%
TTATCTTCTTCTGGACTCCA+TGG + chr5_4:60895670-60895689 None:intergenic 40.0%
GTGGATCACATTCAGAAACA+TGG - chr5_4:60895697-60895716 Msa0861550:CDS 40.0%
CACATTCAGAAACATGGTCA+TGG - chr5_4:60895703-60895722 Msa0861550:CDS 40.0%
AGAAACATGGTCATGGAAGT+TGG - chr5_4:60895710-60895729 Msa0861550:CDS 40.0%
CTAAGGCCTGATATTAGAAG+AGG - chr5_4:60895802-60895821 Msa0861550:CDS 40.0%
! CTGCGTTCGAACATAGTTTT+AGG + chr5_4:60896462-60896481 None:intergenic 40.0%
CTAAAACTATGTTCGAACGC+AGG - chr5_4:60896460-60896479 Msa0861550:intron 40.0%
TTCACTTCTCCCACAAAGTT+TGG - chr5_4:60896882-60896901 Msa0861550:intron 40.0%
TGGTAGTAATTGCTGAAGAG+GGG + chr5_4:60897013-60897032 None:intergenic 40.0%
GTGGTAGTAATTGCTGAAGA+GGG + chr5_4:60897014-60897033 None:intergenic 40.0%
TGTGGTAGTAATTGCTGAAG+AGG + chr5_4:60897015-60897034 None:intergenic 40.0%
!! TGAGAGCACTCAAATTCTTG+TGG + chr5_4:60897033-60897052 None:intergenic 40.0%
TTAACTGTTCCTGAACGTTG+AGG + chr5_4:60897138-60897157 None:intergenic 40.0%
TCAACGTTCAGGAACAGTTA+AGG - chr5_4:60897137-60897156 Msa0861550:CDS 40.0%
!! CTTCCAACAGCTTTGAAACT+TGG - chr5_4:60897211-60897230 Msa0861550:CDS 40.0%
!! TCCAACAGCTTTGAAACTTG+GGG - chr5_4:60897213-60897232 Msa0861550:CDS 40.0%
TGAAGAAGAAGAAGGGTCCA+TGG - chr5_4:60895650-60895669 Msa0861550:CDS 45.0%
CTGTTCAATCCTGCAAGCTT+TGG + chr5_4:60895745-60895764 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG - chr5_4:60895748-60895767 Msa0861550:CDS 45.0%
GCTATAGCAACTCATCTTCC+AGG - chr5_4:60896661-60896680 Msa0861550:intron 45.0%
TAGCAACTCATCTTCCAGGA+AGG - chr5_4:60896665-60896684 Msa0861550:intron 45.0%
AGGTCTAGGTGATCTGTTCT+TGG + chr5_4:60896775-60896794 None:intergenic 45.0%
GGTGAAACTGAAACCAGCTT+TGG + chr5_4:60897117-60897136 None:intergenic 45.0%
TCAGTTTCACCTCAACGTTC+AGG - chr5_4:60897126-60897145 Msa0861550:CDS 45.0%
CGTTCAGGAACAGTTAAGGT+AGG - chr5_4:60897141-60897160 Msa0861550:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG + chr5_4:60897217-60897236 None:intergenic 45.0%
TGAAGAAGAAGAAGGGTCCA+TGG - chr5_4:60895650-60895669 Msa0861550:CDS 45.0%
CTGTTCAATCCTGCAAGCTT+TGG + chr5_4:60895745-60895764 None:intergenic 45.0%
CTTGCAGGATTGAACAGATG+TGG - chr5_4:60895748-60895767 Msa0861550:CDS 45.0%
GCTATAGCAACTCATCTTCC+AGG - chr5_4:60896661-60896680 Msa0861550:intron 45.0%
TAGCAACTCATCTTCCAGGA+AGG - chr5_4:60896665-60896684 Msa0861550:intron 45.0%
AGGTCTAGGTGATCTGTTCT+TGG + chr5_4:60896775-60896794 None:intergenic 45.0%
GGTGAAACTGAAACCAGCTT+TGG + chr5_4:60897117-60897136 None:intergenic 45.0%
TCAGTTTCACCTCAACGTTC+AGG - chr5_4:60897126-60897145 Msa0861550:CDS 45.0%
CGTTCAGGAACAGTTAAGGT+AGG - chr5_4:60897141-60897160 Msa0861550:CDS 45.0%
TCCCCAAGTTTCAAAGCTGT+TGG + chr5_4:60897217-60897236 None:intergenic 45.0%
!! CAAAAAATAAATAAATTAAT+AGG - chr5_4:60896549-60896568 Msa0861550:intron 5.0%
!! CAAAAAATAAATAAATTAAT+AGG - chr5_4:60896549-60896568 Msa0861550:intron 5.0%
AGAGCTCTTCCAAAGCTTGC+AGG - chr5_4:60895733-60895752 Msa0861550:CDS 50.0%
GGTTAGATCCAGTGACACAC+AGG - chr5_4:60896749-60896768 Msa0861550:intron 50.0%
AGAGCTCTTCCAAAGCTTGC+AGG - chr5_4:60895733-60895752 Msa0861550:CDS 50.0%
GGTTAGATCCAGTGACACAC+AGG - chr5_4:60896749-60896768 Msa0861550:intron 50.0%
GTTCTTGGCCTGTGTGTCAC+TGG + chr5_4:60896760-60896779 None:intergenic 55.0%
GTTCTTGGCCTGTGTGTCAC+TGG + chr5_4:60896760-60896779 None:intergenic 55.0%
CGAACGCAGGTTCGAACACG+TGG - chr5_4:60896473-60896492 Msa0861550:intron 60.0%
CGAACGCAGGTTCGAACACG+TGG - chr5_4:60896473-60896492 Msa0861550:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60895616 60897290 60895616 ID=Msa0861550;Name=Msa0861550
chr5_4 mRNA 60895616 60897290 60895616 ID=Msa0861550-mRNA-1;Parent=Msa0861550;Name=Msa0861550-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|301
chr5_4 exon 60897022 60897290 60897022 ID=Msa0861550-mRNA-1:exon:18849;Parent=Msa0861550-mRNA-1
chr5_4 exon 60895616 60896252 60895616 ID=Msa0861550-mRNA-1:exon:18848;Parent=Msa0861550-mRNA-1
chr5_4 CDS 60897022 60897290 60897022 ID=Msa0861550-mRNA-1:cds;Parent=Msa0861550-mRNA-1
chr5_4 CDS 60895616 60896252 60895616 ID=Msa0861550-mRNA-1:cds;Parent=Msa0861550-mRNA-1
Gene Sequence

>Msa0861550

ATGATGAGAACACCAAGCAATGATGAAAGTGGCTTGAAGAAGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGTCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAACAGATGTGGAAAGAGTTGTAGACTAAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAACTCATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTGAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAACAAATAATATTGAATGCTGCAAACATTGTCACCAATTGTGACATAAATAATAATGCTCTAAGGCTACAATATTCACTTCTCCCACAAAGTTTGGTAAATGATGTTTTGGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAGCCTAATTTGCAAAACTTTGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAATATCATCAAATTCACTTCCAAAGCTGGTTTCAGTTTCACCTCAACGTTCAGGAACAGTTAAGGTAGGAGAAGAAAACATGATGATAGATGCAAAAGACTGTTGTAACACTTCTTCTTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAGTAA
Protein sequence

>Msa0861550

MMRTPSNDESGLKKKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTNCDINNNALRLQYSLLPQSLVNDVLGFNNNIQSFYDGSNIGISSQTIQPNLQNFEAPLQQLLPQEFECSQKFGEQIGNTNFASTISSNSLPKLVSVSPQRSGTVKVGEENMMIDAKDCCNTSSSNSFETWGDFINDDANDAYWKDFIE*