AlfalfaGEDB | Msa0862720

M. sativa cultivar zhongmu-4 / Msa0862720

KEGG: K12606|K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862720	AET00566.2	66.225	151	43	1	34	176	1	151	7.17e-52	187
Msa0862720	AET00566.2	91.883	308	25	0	1	308	130	437	0.0	579

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862720	sp\|Q6P819\|CNOT9_XENTR	53.846	260	119	1	43	301	28	287	2.25e-89	271

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862720	G7K8L3	66.225	151	43	1	34	176	1	151	3.42e-52	187
Msa0862720	G7K8L3	91.883	308	25	0	1	308	130	437	0.0	579

TFs/TRs:

Gene ID	Type	Classification
Msa0862720	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862720	MtrunA17_Chr5g0444621	82.960	223	38	0	59	281	42	264	1.10e-132	377
Msa0862720	MtrunA17_Chr7g0224601	65.894	302	98	2	12	308	2	303	3.06e-128	367
Msa0862720	MtrunA17_Chr8g0392781	54.706	340	118	3	5	308	5	344	1.42e-114	335
Msa0862720	MtrunA17_Chr3g0099561	60.662	272	106	1	38	308	26	297	9.82e-110	320
Msa0862720	MtrunA17_Chr1g0177151	57.977	257	103	2	1	256	1	253	2.11e-98	290
Msa0862720	MtrunA17_Chr6g0477171	65.445	191	66	0	64	254	51	241	2.72e-78	239
Msa0862720	MtrunA17_Chr3g0083821	67.368	95	31	0	79	173	36	130	2.13e-37	129
Msa0862720	MtrunA17_Chr3g0083811	54.310	116	53	0	185	300	1	116	4.08e-35	123
Msa0862720	MtrunA17_Chr5g0444631	73.585	53	14	0	111	163	4	56	5.45e-19	79.3
Msa0862720	MtrunA17_Chr6g0477181	60.000	60	24	0	1	60	1	60	7.76e-15	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0862720	AT3G20800.1	58.333	276	114	1	34	308	35	310	1.60e-105	310
Msa0862720	AT5G12980.1	54.167	264	120	1	38	300	35	298	1.44e-93	280
Msa0862720	AT2G32550.3	30.204	245	163	3	61	297	37	281	6.54e-28	109
Msa0862720	AT2G32550.2	29.577	284	188	6	26	297	37	320	1.28e-27	109
Msa0862720	AT2G32550.1	29.204	226	152	3	80	297	1	226	3.37e-23	95.9

Find 54 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGAAGACAATTGATGAAAT+TGG	0.182381	5_4:-62440878	None:intergenic
ATTTCAGATGACGTCATTTC+AGG	0.232530	5_4:+62438163	Msa0862720:intron
CCTTTATTGTGGAATTCTTT+TGG	0.239207	5_4:+62438194	Msa0862720:CDS
TATGAGCAGTGGTGCTAAAC+TGG	0.287121	5_4:-62437248	None:intergenic
TCCACTATGCTTGGGTTGTA+TGG	0.297190	5_4:+62440349	Msa0862720:CDS
CGATGTTCTTGCGCTACTTC+TGG	0.299500	5_4:+62438986	Msa0862720:CDS
AAGGAAACTCATGACTTCTT+TGG	0.319816	5_4:-62440309	None:intergenic
CTTGGTAGTCTTGGAGTCAT+TGG	0.346879	5_4:+62439545	Msa0862720:CDS
CTTCATTTGTAGCTCCTCTC+AGG	0.352750	5_4:+62437217	Msa0862720:CDS
CCAAAAGAATTCCACAATAA+AGG	0.356330	5_4:-62438194	None:intergenic
AGAGCATTTGCTCTTAGATC+TGG	0.364235	5_4:-62437312	None:intergenic
TGAAATAATTCCACTATGCT+TGG	0.366345	5_4:+62440340	Msa0862720:CDS
TTGGAATCTTTGAGAATGTC+TGG	0.372338	5_4:-62440859	None:intergenic
TTAAATTACTTGTCGTTTGA+AGG	0.381214	5_4:-62439502	None:intergenic
AGGAATGACATCTTTGTATC+CGG	0.390087	5_4:-62439173	None:intergenic
AAAATGTTGTTAGACGTTGA+TGG	0.395577	5_4:+62440567	Msa0862720:CDS
TCTTGGAGTCATTGGTGCTT+TGG	0.402629	5_4:+62439553	Msa0862720:CDS
TTACTTGTCGTTTGAAGGAA+TGG	0.412465	5_4:-62439497	None:intergenic
GTTGTTAGACGTTGATGGTT+TGG	0.426908	5_4:+62440572	Msa0862720:CDS
CTCGTTTGTCTGAACATAGC+AGG	0.439986	5_4:+62440715	Msa0862720:CDS
CACATTCGAGTTGATTGTGT+TGG	0.440645	5_4:-62438963	None:intergenic
GAAATAATTCCACTATGCTT+GGG	0.444586	5_4:+62440341	Msa0862720:CDS
AAAAGTTGTATGAAAATCTT+GGG	0.445862	5_4:+62441665	Msa0862720:CDS
CATAGTGGAATTATTTCACT+TGG	0.458939	5_4:-62440335	None:intergenic
TGGTTGAGGCTTGGTAGTCT+TGG	0.464688	5_4:+62439536	Msa0862720:CDS
TGTGTTGGAGTAAGATTTAG+TGG	0.471165	5_4:-62438948	None:intergenic
TGCTCTTCGTGTGCTTTCCA+AGG	0.477321	5_4:+62437329	Msa0862720:CDS
GAATTATTTCACTTGGAAGA+AGG	0.485164	5_4:-62440328	None:intergenic
TAACACAATATGAGTGGTTG+AGG	0.491507	5_4:+62439522	Msa0862720:CDS
TTCAGGAAGATTCAACAACT+TGG	0.491745	5_4:+62441632	Msa0862720:intron
GAAAATTGACATTACCATTG+AGG	0.492991	5_4:-62439193	None:intergenic
AGGAGCTTGCACCTTTATTG+TGG	0.506558	5_4:+62438183	Msa0862720:CDS
TTCATTTGTAGCTCCTCTCA+GGG	0.519648	5_4:+62437218	Msa0862720:CDS
AGATTTAGTGGTGAAAGAGT+AGG	0.532575	5_4:-62438936	None:intergenic
AACGCCTTGTTATTGAACTT+AGG	0.532607	5_4:+62437286	Msa0862720:CDS
CAATATGAGTGGTTGAGGCT+TGG	0.532866	5_4:+62439527	Msa0862720:CDS
CTCTTTGTTGACATCGATCG+TGG	0.537332	5_4:-62437189	None:intergenic
GTTGATGGTTTGGCTTATGT+TGG	0.552096	5_4:+62440582	Msa0862720:CDS
ACAAAGATGTCATTCCTCAA+TGG	0.552200	5_4:+62439179	Msa0862720:CDS
TCCATACAACCCAAGCATAG+TGG	0.555182	5_4:-62440350	None:intergenic
TAGCACCACTGCTCATATGA+TGG	0.556679	5_4:+62437254	Msa0862720:CDS
GGAATGACATCTTTGTATCC+GGG	0.558198	5_4:-62439172	None:intergenic
AGTCATTGGTGCTTTGGTGA+AGG	0.559413	5_4:+62439559	Msa0862720:CDS
AGGAAGATTCAACAACTTGG+AGG	0.584872	5_4:+62441635	Msa0862720:intron
TCTTTGTTTCTTCATCCACC+AGG	0.598490	5_4:-62441709	None:intergenic
ATGAGCAGTGGTGCTAAACT+GGG	0.605309	5_4:-62437247	None:intergenic
GTAATTTAACACAATATGAG+TGG	0.620131	5_4:+62439516	Msa0862720:CDS
GTCCACCATCATATGAGCAG+TGG	0.629949	5_4:-62437259	None:intergenic
CACCACTGCTCATATGATGG+TGG	0.655595	5_4:+62437257	Msa0862720:CDS
GATTCCTAAGTTCAATAACA+AGG	0.670050	5_4:-62437290	None:intergenic
ATAGTGTGTAGCATCTCACC+CGG	0.679113	5_4:+62439154	Msa0862720:intron
AACTGGGTAGAAGCCCTGAG+AGG	0.696390	5_4:-62437231	None:intergenic
GGGTTGTATGGAAATCGACA+AGG	0.706182	5_4:+62440361	Msa0862720:CDS
ATTATAAGCTTCAACAAACG+AGG	0.715153	5_4:-62440681	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTATATTTTAAATTTTTAT+TGG	-	chr5_4:62441221-62441240	None:intergenic	0.0%
!!	ATATATAATATATATTAAAT+TGG	+	chr5_4:62441493-62441512	Msa0862720:intron	0.0%
!!!	GAAACTTTTATATTAAAAAT+TGG	+	chr5_4:62438080-62438099	Msa0862720:intron	10.0%
!!	AAGATCTATAAATATTTAAA+AGG	-	chr5_4:62438315-62438334	None:intergenic	10.0%
!!!	TATTTTCACAATTAAAAAAA+TGG	+	chr5_4:62438620-62438639	Msa0862720:intron	10.0%
!!!	ATTTTTTAATAATAAATCAG+TGG	-	chr5_4:62441097-62441116	None:intergenic	10.0%
!!!	TTCATTTTTTATTTGTTTCA+TGG	+	chr5_4:62437381-62437400	Msa0862720:intron	15.0%
!!!	TCATTTTTTATTTGTTTCAT+GGG	+	chr5_4:62437382-62437401	Msa0862720:intron	15.0%
!!	ATAATAATGTGATAGTTAAT+AGG	+	chr5_4:62437908-62437927	Msa0862720:intron	15.0%
!!!	TTCTTTATAGATAACTTTTT+TGG	-	chr5_4:62437956-62437975	None:intergenic	15.0%
!!	GAAAAATTTACCTTAAAAAT+AGG	+	chr5_4:62437976-62437995	Msa0862720:intron	15.0%
!!	TTCATAAACTAAAAAAAGAA+GGG	-	chr5_4:62438510-62438529	None:intergenic	15.0%
!!	ATTCATAAACTAAAAAAAGA+AGG	-	chr5_4:62438511-62438530	None:intergenic	15.0%
!!	ATATATTGAAATTATTTCCT+GGG	-	chr5_4:62438916-62438935	None:intergenic	15.0%
!!!	ATAAGTTTTTGAATTGTATT+TGG	+	chr5_4:62439027-62439046	Msa0862720:intron	15.0%
!!	AGTTATCAAATTAAATATTG+TGG	-	chr5_4:62439270-62439289	None:intergenic	15.0%
!!	AATTATCATTAATGATATGT+AGG	+	chr5_4:62439305-62439324	Msa0862720:intron	15.0%
!!	AATTCTTTATAATCAGATTT+AGG	+	chr5_4:62439346-62439365	Msa0862720:intron	15.0%
!!!	ACTATATTCTCTTTTTATTA+TGG	-	chr5_4:62439656-62439675	None:intergenic	15.0%
!!	ATAAAAAGAGAATATAGTTA+CGG	+	chr5_4:62439658-62439677	Msa0862720:intron	15.0%
!!!	ATTGACTATTTTAAAGTTTA+TGG	+	chr5_4:62439802-62439821	Msa0862720:intron	15.0%
!!!	AAGTTTTAATGGAAATTATA+AGG	-	chr5_4:62439895-62439914	None:intergenic	15.0%
!!!	ATTGTTGATAACAATTTTAA+TGG	+	chr5_4:62439947-62439966	Msa0862720:intron	15.0%
!!	ATTAAAAAGAAGAAATAGTT+AGG	-	chr5_4:62440177-62440196	None:intergenic	15.0%
!!	TGACAAATTATAGATAAATA+GGG	-	chr5_4:62440243-62440262	None:intergenic	15.0%
!!	TTGACAAATTATAGATAAAT+AGG	-	chr5_4:62440244-62440263	None:intergenic	15.0%
!!	AACTTCTTTCATATTAAAAT+AGG	+	chr5_4:62440809-62440828	Msa0862720:intron	15.0%
!!	ACTTCTTTCATATTAAAATA+GGG	+	chr5_4:62440810-62440829	Msa0862720:intron	15.0%
!!	ATTAAATACACATTTCATTT+AGG	+	chr5_4:62440921-62440940	Msa0862720:intron	15.0%
!!	ACTATTTCAGATATTTAAAT+TGG	+	chr5_4:62441542-62441561	Msa0862720:intron	15.0%
!!	AAGATGTTTAATCTAGAAAA+AGG	-	chr5_4:62437529-62437548	None:intergenic	20.0%
!!!	TTTTCTAGATTAAACATCTT+TGG	+	chr5_4:62437529-62437548	Msa0862720:intron	20.0%
!!!	ACATCTTTGGTTTAATTTTT+CGG	+	chr5_4:62437542-62437561	Msa0862720:intron	20.0%
!!	ATGAGTTTGAAAAACATTAT+AGG	-	chr5_4:62438113-62438132	None:intergenic	20.0%
!!	AAAAATTATCATTCTGCAAT+TGG	+	chr5_4:62438402-62438421	Msa0862720:intron	20.0%
!!	GGAAACACATAAATATAAAT+TGG	-	chr5_4:62438569-62438588	None:intergenic	20.0%
!!	TAAAAAAATGGACATGATTA+TGG	+	chr5_4:62438632-62438651	Msa0862720:intron	20.0%
!!	AAAAAAATGGACATGATTAT+GGG	+	chr5_4:62438633-62438652	Msa0862720:intron	20.0%
!!!	TTTTAAAATAATTGTCCAAG+AGG	+	chr5_4:62438702-62438721	Msa0862720:intron	20.0%
!!	GATATATTGAAATTATTTCC+TGG	-	chr5_4:62438917-62438936	None:intergenic	20.0%
!!!	TTTTCCCATTCTTAATATAA+CGG	-	chr5_4:62439389-62439408	None:intergenic	20.0%
!!!	GTGTGTTTAATAAGTTTTAA+TGG	+	chr5_4:62439624-62439643	Msa0862720:intron	20.0%
!!	AAAAAACTATTTACTTCTAC+CGG	+	chr5_4:62439843-62439862	Msa0862720:intron	20.0%
!!!	ATTTCCATTAAAACTTTTAG+TGG	+	chr5_4:62439899-62439918	Msa0862720:intron	20.0%
!!	ATCAACAATTAATTGATTGT+GGG	-	chr5_4:62439936-62439955	None:intergenic	20.0%
!!	TATCAACAATTAATTGATTG+TGG	-	chr5_4:62439937-62439956	None:intergenic	20.0%
!!!	TTGATAACAATTTTAATGGT+CGG	+	chr5_4:62439951-62439970	Msa0862720:intron	20.0%
!!	GTTCTATGAAAATTCATATA+AGG	+	chr5_4:62440086-62440105	Msa0862720:intron	20.0%
!!!	TGAAAATTCATATAAGGTTT+TGG	+	chr5_4:62440092-62440111	Msa0862720:intron	20.0%
!!	TGAATATCATGTATAACAAA+AGG	-	chr5_4:62440279-62440298	None:intergenic	20.0%
!!!	AAAATGCTCTAAAACTAAAT+TGG	-	chr5_4:62440428-62440447	None:intergenic	20.0%
!!	TTGTTTATATGAATTTGACA+TGG	+	chr5_4:62440446-62440465	Msa0862720:intron	20.0%
!!	AAAACATATTATGACATATC+AGG	-	chr5_4:62440959-62440978	None:intergenic	20.0%
!!!	TCAAAATATTCCTTTTTGTT+GGG	-	chr5_4:62441195-62441214	None:intergenic	20.0%
!!!	TTCAAAATATTCCTTTTTGT+TGG	-	chr5_4:62441196-62441215	None:intergenic	20.0%
!!!	TTTATAAATTTTATGCTAGC+AGG	-	chr5_4:62441316-62441335	None:intergenic	20.0%
!!!	GATATTGTTTTGATTTTTTC+AGG	+	chr5_4:62441615-62441634	Msa0862720:intron	20.0%
!!	AAAAAGTTGTATGAAAATCT+TGG	+	chr5_4:62441664-62441683	Msa0862720:CDS	20.0%
!!	AAAAGTTGTATGAAAATCTT+GGG	+	chr5_4:62441665-62441684	Msa0862720:CDS	20.0%
!	AAAATGAACAACAAACTGAA+AGG	-	chr5_4:62437369-62437388	None:intergenic	25.0%
!	GTTCATTAATTAGTGTATCA+CGG	+	chr5_4:62437606-62437625	Msa0862720:intron	25.0%
!	TTCATTAATTAGTGTATCAC+GGG	+	chr5_4:62437607-62437626	Msa0862720:intron	25.0%
!	CAAGAAAGAGATAATTAGAA+AGG	+	chr5_4:62437868-62437887	Msa0862720:intron	25.0%
!	ATGTGATAGTTAATAGGATT+TGG	+	chr5_4:62437914-62437933	Msa0862720:intron	25.0%
!	TTTACCTTAAAAATAGGACT+AGG	+	chr5_4:62437982-62438001	Msa0862720:intron	25.0%
!!	ATTAAATCTTGTTTCCTAAC+AGG	-	chr5_4:62438343-62438362	None:intergenic	25.0%
!	AAACTAAAAAAAGAAGGGAA+AGG	-	chr5_4:62438505-62438524	None:intergenic	25.0%
!	TCACATTGAAAAGTAAAAGT+TGG	-	chr5_4:62438590-62438609	None:intergenic	25.0%
!	AAAAAATGGACATGATTATG+GGG	+	chr5_4:62438634-62438653	Msa0862720:intron	25.0%
!!!	AGTTTAGTTTTGTAAGATCA+AGG	+	chr5_4:62438746-62438765	Msa0862720:intron	25.0%
!!!	GTTTAGTTTTGTAAGATCAA+GGG	+	chr5_4:62438747-62438766	Msa0862720:intron	25.0%
!	TATCAATTTACAATTGTACG+AGG	-	chr5_4:62438788-62438807	None:intergenic	25.0%
!	TAGACCGTTATATTAAGAAT+GGG	+	chr5_4:62439382-62439401	Msa0862720:intron	25.0%
!!	TTAAATTACTTGTCGTTTGA+AGG	-	chr5_4:62439505-62439524	None:intergenic	25.0%
!	GTAATTTAACACAATATGAG+TGG	+	chr5_4:62439516-62439535	Msa0862720:CDS	25.0%
!	TGTGAAACTAAATTTGACAA+TGG	+	chr5_4:62439707-62439726	Msa0862720:intron	25.0%
!	ATGGAAATTATAAGGAATGA+TGG	-	chr5_4:62439887-62439906	None:intergenic	25.0%
!	TTGTTATACATGATATTCAC+AGG	+	chr5_4:62440280-62440299	Msa0862720:intron	25.0%
!	ATAAAGTTGTATATCAATGC+AGG	+	chr5_4:62440524-62440543	Msa0862720:intron	25.0%
!	ATGAAGACAATTGATGAAAT+TGG	-	chr5_4:62440881-62440900	None:intergenic	25.0%
!!!	AAATTAAAGAAGTGTCACAT+AGG	+	chr5_4:62441423-62441442	Msa0862720:intron	25.0%
!!!	GGAATTCTAAGGTATTTAAT+TGG	+	chr5_4:62441455-62441474	Msa0862720:intron	25.0%
!	GGTCACATATTTGATTATAT+TGG	+	chr5_4:62441514-62441533	Msa0862720:intron	25.0%
	GATTCCTAAGTTCAATAACA+AGG	-	chr5_4:62437293-62437312	None:intergenic	30.0%
	ACAAGTAAACCAAATCCTTA+GGG	+	chr5_4:62437409-62437428	Msa0862720:intron	30.0%
	TTGAATCTATGTTGACATAG+AGG	-	chr5_4:62437476-62437495	None:intergenic	30.0%
!	TTTTATGAACTTGTGTTAGC+TGG	+	chr5_4:62437746-62437765	Msa0862720:intron	30.0%
!	TTGCACATTTTTATGCTTCT+TGG	-	chr5_4:62437851-62437870	None:intergenic	30.0%
!!!	TGATCCTAGTCCTATTTTTA+AGG	-	chr5_4:62437989-62438008	None:intergenic	30.0%
	CTAAACTATGCAACTTAGAT+CGG	-	chr5_4:62438022-62438041	None:intergenic	30.0%
	CCAAAAGAATTCCACAATAA+AGG	-	chr5_4:62438197-62438216	None:intergenic	30.0%
!	CCTTTATTGTGGAATTCTTT+TGG	+	chr5_4:62438194-62438213	Msa0862720:CDS	30.0%
	ATAGATCTTTACTACCTGTT+AGG	+	chr5_4:62438326-62438345	Msa0862720:intron	30.0%
	TGCATGTGTCTTACTTATAT+TGG	+	chr5_4:62438376-62438395	Msa0862720:intron	30.0%
	GAAAATTGACATTACCATTG+AGG	-	chr5_4:62439196-62439215	None:intergenic	30.0%
	GTAGACCGTTATATTAAGAA+TGG	+	chr5_4:62439381-62439400	Msa0862720:intron	30.0%
!!	AGCACCACTAAAAGTTTTAA+TGG	-	chr5_4:62439906-62439925	None:intergenic	30.0%
	AGATCAGTTTATATTCATCG+TGG	+	chr5_4:62440137-62440156	Msa0862720:intron	30.0%
	GATCAGTTTATATTCATCGT+GGG	+	chr5_4:62440138-62440157	Msa0862720:intron	30.0%
	GAATTATTTCACTTGGAAGA+AGG	-	chr5_4:62440331-62440350	None:intergenic	30.0%
!	CATAGTGGAATTATTTCACT+TGG	-	chr5_4:62440338-62440357	None:intergenic	30.0%
	TGAAATAATTCCACTATGCT+TGG	+	chr5_4:62440340-62440359	Msa0862720:CDS	30.0%
	GAAATAATTCCACTATGCTT+GGG	+	chr5_4:62440341-62440360	Msa0862720:CDS	30.0%
	TGGCAAAACAACAATAATAG+AGG	-	chr5_4:62440408-62440427	None:intergenic	30.0%
	AAAATGTTGTTAGACGTTGA+TGG	+	chr5_4:62440567-62440586	Msa0862720:CDS	30.0%
	ATTATAAGCTTCAACAAACG+AGG	-	chr5_4:62440684-62440703	None:intergenic	30.0%
	ATATGACAAGACCTGTTATA+TGG	+	chr5_4:62441014-62441033	Msa0862720:intron	30.0%
!	TCAATGGCTATTAGTTTAGA+AGG	+	chr5_4:62441117-62441136	Msa0862720:intron	30.0%
!	CAATGGCTATTAGTTTAGAA+GGG	+	chr5_4:62441118-62441137	Msa0862720:intron	30.0%
	TAAGTTTAGTGTTACACTTG+CGG	+	chr5_4:62441153-62441172	Msa0862720:intron	30.0%
!!	AGTCTTGTTTGAATATGAAG+AGG	+	chr5_4:62441393-62441412	Msa0862720:intron	30.0%
!!!	AATCAAGCTTTTTTAGTACC+TGG	+	chr5_4:62441691-62441710	Msa0862720:CDS	30.0%
!!	AACGCCTTGTTATTGAACTT+AGG	+	chr5_4:62437286-62437305	Msa0862720:CDS	35.0%
	AGGTAGATTAGTAAGAACCT+TGG	-	chr5_4:62437349-62437368	None:intergenic	35.0%
	CACAAGTAAACCAAATCCTT+AGG	+	chr5_4:62437408-62437427	Msa0862720:intron	35.0%
	ATTTCAGATGACGTCATTTC+AGG	+	chr5_4:62438163-62438182	Msa0862720:intron	35.0%
!	GAAAAATATGCTGGTAGTGT+GGG	+	chr5_4:62438426-62438445	Msa0862720:intron	35.0%
!	TTTTAGCCACTGTCCTTTAT+CGG	+	chr5_4:62438455-62438474	Msa0862720:intron	35.0%
!	CGAGTAATGATATTTTTCCC+AGG	+	chr5_4:62438896-62438915	Msa0862720:intron	35.0%
	AGATTTAGTGGTGAAAGAGT+AGG	-	chr5_4:62438939-62438958	None:intergenic	35.0%
	TGTGTTGGAGTAAGATTTAG+TGG	-	chr5_4:62438951-62438970	None:intergenic	35.0%
!!	ATATGAGAGAAGAGTGTTAG+AGG	-	chr5_4:62439127-62439146	None:intergenic	35.0%
	AGGAATGACATCTTTGTATC+CGG	-	chr5_4:62439176-62439195	None:intergenic	35.0%
	ACAAAGATGTCATTCCTCAA+TGG	+	chr5_4:62439179-62439198	Msa0862720:CDS	35.0%
	ATATAAGTGCATGTTAGCTG+CGG	-	chr5_4:62439471-62439490	None:intergenic	35.0%
!	TTACTTGTCGTTTGAAGGAA+TGG	-	chr5_4:62439500-62439519	None:intergenic	35.0%
	TAACACAATATGAGTGGTTG+AGG	+	chr5_4:62439522-62439541	Msa0862720:CDS	35.0%
!!	TGAAGGTATTACATCTTTGC+TGG	+	chr5_4:62439576-62439595	Msa0862720:intron	35.0%
	GTAAATGCATGTGTAATTGC+CGG	-	chr5_4:62439865-62439884	None:intergenic	35.0%
!!	ATTTTAATGGTCGGTTGAGT+TGG	+	chr5_4:62439960-62439979	Msa0862720:intron	35.0%
	TTTCAATCTGATTGTGCTCT+TGG	+	chr5_4:62440028-62440047	Msa0862720:intron	35.0%
	AAGGAAACTCATGACTTCTT+TGG	-	chr5_4:62440312-62440331	None:intergenic	35.0%
!	GAGGAACTAACAGATTTTGA+TGG	-	chr5_4:62440389-62440408	None:intergenic	35.0%
	AGTTGTATATCAATGCAGGT+TGG	+	chr5_4:62440528-62440547	Msa0862720:intron	35.0%
!	TTGGAATCTTTGAGAATGTC+TGG	-	chr5_4:62440862-62440881	None:intergenic	35.0%
	GTCTTCATGTAAGTACTTCT+TGG	+	chr5_4:62440893-62440912	Msa0862720:intron	35.0%
!!	CTTTTAGGTACACAACCTAA+TGG	+	chr5_4:62441040-62441059	Msa0862720:intron	35.0%
	GCATGATACACAAATCCATT+AGG	-	chr5_4:62441058-62441077	None:intergenic	35.0%
	TACACTTGCGGTATTTGTAT+AGG	+	chr5_4:62441165-62441184	Msa0862720:intron	35.0%
	ACACTTGCGGTATTTGTATA+GGG	+	chr5_4:62441166-62441185	Msa0862720:intron	35.0%
!!	TTAAAGAAGTGTCACATAGG+TGG	+	chr5_4:62441426-62441445	Msa0862720:intron	35.0%
!!	TAAAGAAGTGTCACATAGGT+GGG	+	chr5_4:62441427-62441446	Msa0862720:intron	35.0%
	TTCAGGAAGATTCAACAACT+TGG	+	chr5_4:62441632-62441651	Msa0862720:intron	35.0%
	TTCATTTGTAGCTCCTCTCA+GGG	+	chr5_4:62437218-62437237	Msa0862720:CDS	40.0%
!	AGAGCATTTGCTCTTAGATC+TGG	-	chr5_4:62437315-62437334	None:intergenic	40.0%
	ATCACAACTCCCTAAGGATT+TGG	-	chr5_4:62437421-62437440	None:intergenic	40.0%
!	TAGAGTATCACAACTCCCTA+AGG	-	chr5_4:62437427-62437446	None:intergenic	40.0%
	GATTTGGATGAAAGCGACAA+TGG	+	chr5_4:62437930-62437949	Msa0862720:intron	40.0%
	CAAGATACTAACGCACAGAA+AGG	-	chr5_4:62438282-62438301	None:intergenic	40.0%
	GCAATTGGCGAAAAATATGC+TGG	+	chr5_4:62438417-62438436	Msa0862720:intron	40.0%
!	CGAAAAATATGCTGGTAGTG+TGG	+	chr5_4:62438425-62438444	Msa0862720:intron	40.0%
	GGAAAGGATGATAGTTACGA+AGG	-	chr5_4:62438489-62438508	None:intergenic	40.0%
	AAATGGACATGATTATGGGG+AGG	+	chr5_4:62438637-62438656	Msa0862720:intron	40.0%
	AATGGACATGATTATGGGGA+GGG	+	chr5_4:62438638-62438657	Msa0862720:intron	40.0%
	ATTGATGAGCTAGTACCTCT+TGG	-	chr5_4:62438720-62438739	None:intergenic	40.0%
!!	CACATTCGAGTTGATTGTGT+TGG	-	chr5_4:62438966-62438985	None:intergenic	40.0%
	GGAATGACATCTTTGTATCC+GGG	-	chr5_4:62439175-62439194	None:intergenic	40.0%
!!	GTTGTTAGACGTTGATGGTT+TGG	+	chr5_4:62440572-62440591	Msa0862720:CDS	40.0%
!!	GTTGATGGTTTGGCTTATGT+TGG	+	chr5_4:62440582-62440601	Msa0862720:CDS	40.0%
	TTTGTCTGAACATAGCAGGT+TGG	+	chr5_4:62440719-62440738	Msa0862720:intron	40.0%
	TGACAAGACCTGTTATATGG+TGG	+	chr5_4:62441017-62441036	Msa0862720:intron	40.0%
	CCTAAAAGCCACCATATAAC+AGG	-	chr5_4:62441028-62441047	None:intergenic	40.0%
!	CCTGTTATATGGTGGCTTTT+AGG	+	chr5_4:62441025-62441044	Msa0862720:intron	40.0%
	CACTTGCGGTATTTGTATAG+GGG	+	chr5_4:62441167-62441186	Msa0862720:intron	40.0%
	AGGAAGATTCAACAACTTGG+AGG	+	chr5_4:62441635-62441654	Msa0862720:intron	40.0%
!!!	CAAGCTTTTTTAGTACCTGG+TGG	+	chr5_4:62441694-62441713	Msa0862720:CDS	40.0%
	CTCTTTGTTGACATCGATCG+TGG	-	chr5_4:62437192-62437211	None:intergenic	45.0%
	CTTCATTTGTAGCTCCTCTC+AGG	+	chr5_4:62437217-62437236	Msa0862720:CDS	45.0%
!	ATGAGCAGTGGTGCTAAACT+GGG	-	chr5_4:62437250-62437269	None:intergenic	45.0%
!	TATGAGCAGTGGTGCTAAAC+TGG	-	chr5_4:62437251-62437270	None:intergenic	45.0%
	TAGCACCACTGCTCATATGA+TGG	+	chr5_4:62437254-62437273	Msa0862720:CDS	45.0%
	AGGAGCTTGCACCTTTATTG+TGG	+	chr5_4:62438183-62438202	Msa0862720:CDS	45.0%
	TGTCATCCGATAAAGGACAG+TGG	-	chr5_4:62438464-62438483	None:intergenic	45.0%
!!	GAAGGAGTGTCATCCGATAA+AGG	-	chr5_4:62438471-62438490	None:intergenic	45.0%
	ATAGTGTGTAGCATCTCACC+CGG	+	chr5_4:62439154-62439173	Msa0862720:intron	45.0%
	CAATATGAGTGGTTGAGGCT+TGG	+	chr5_4:62439527-62439546	Msa0862720:CDS	45.0%
!	CTTGGTAGTCTTGGAGTCAT+TGG	+	chr5_4:62439545-62439564	Msa0862720:CDS	45.0%
!	TCTTGGAGTCATTGGTGCTT+TGG	+	chr5_4:62439553-62439572	Msa0862720:CDS	45.0%
!	AGTCATTGGTGCTTTGGTGA+AGG	+	chr5_4:62439559-62439578	Msa0862720:CDS	45.0%
!	TCCACTATGCTTGGGTTGTA+TGG	+	chr5_4:62440349-62440368	Msa0862720:CDS	45.0%
	TCCATACAACCCAAGCATAG+TGG	-	chr5_4:62440353-62440372	None:intergenic	45.0%
	GGGTTGTATGGAAATCGACA+AGG	+	chr5_4:62440361-62440380	Msa0862720:CDS	45.0%
	CTCGTTTGTCTGAACATAGC+AGG	+	chr5_4:62440715-62440734	Msa0862720:CDS	45.0%
	TATAGGGGAGCCCAACAAAA+AGG	+	chr5_4:62441182-62441201	Msa0862720:intron	45.0%
!	GGTGGGTTCAAGGAATTCTA+AGG	+	chr5_4:62441444-62441463	Msa0862720:intron	45.0%
!!	TTATAAAGAATTAATAATTA+GGG	-	chr5_4:62439338-62439357	None:intergenic	5.0%
!!	ATTATAAAGAATTAATAATT+AGG	-	chr5_4:62439339-62439358	None:intergenic	5.0%
!!	TTTATTATTAAAAAATTCAA+TGG	+	chr5_4:62441101-62441120	Msa0862720:intron	5.0%
!!!	TTTATAAATTTTATTATGTT+TGG	+	chr5_4:62441328-62441347	Msa0862720:intron	5.0%
	CACCACTGCTCATATGATGG+TGG	+	chr5_4:62437257-62437276	Msa0862720:CDS	50.0%
	GTCCACCATCATATGAGCAG+TGG	-	chr5_4:62437262-62437281	None:intergenic	50.0%
	TGCTCTTCGTGTGCTTTCCA+AGG	+	chr5_4:62437329-62437348	Msa0862720:CDS	50.0%
	CGATGTTCTTGCGCTACTTC+TGG	+	chr5_4:62438986-62439005	Msa0862720:CDS	50.0%
!	TGGTTGAGGCTTGGTAGTCT+TGG	+	chr5_4:62439536-62439555	Msa0862720:CDS	50.0%
!	GTGTCACATAGGTGGGTTCA+AGG	+	chr5_4:62441434-62441453	Msa0862720:intron	50.0%
	AACTGGGTAGAAGCCCTGAG+AGG	-	chr5_4:62437234-62437253	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	62437174	62441720	62437174	ID=Msa0862720;Name=Msa0862720
chr5_4	mRNA	62437174	62441720	62437174	ID=Msa0862720-mRNA-1;Parent=Msa0862720;Name=Msa0862720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|1\|1\|9\|0\|308
chr5_4	exon	62437174	62437350	62437174	ID=Msa0862720-mRNA-1:exon:19493;Parent=Msa0862720-mRNA-1
chr5_4	exon	62438170	62438238	62438170	ID=Msa0862720-mRNA-1:exon:19494;Parent=Msa0862720-mRNA-1
chr5_4	exon	62438918	62439007	62438918	ID=Msa0862720-mRNA-1:exon:19495;Parent=Msa0862720-mRNA-1
chr5_4	exon	62439158	62439200	62439158	ID=Msa0862720-mRNA-1:exon:19496;Parent=Msa0862720-mRNA-1
chr5_4	exon	62439474	62439580	62439474	ID=Msa0862720-mRNA-1:exon:19497;Parent=Msa0862720-mRNA-1
chr5_4	exon	62440302	62440397	62440302	ID=Msa0862720-mRNA-1:exon:19498;Parent=Msa0862720-mRNA-1
chr5_4	exon	62440546	62440736	62440546	ID=Msa0862720-mRNA-1:exon:19499;Parent=Msa0862720-mRNA-1
chr5_4	exon	62440831	62440900	62440831	ID=Msa0862720-mRNA-1:exon:19500;Parent=Msa0862720-mRNA-1
chr5_4	exon	62441637	62441720	62441637	ID=Msa0862720-mRNA-1:exon:19501;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62437174	62437350	62437174	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62438170	62438238	62438170	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62438918	62439007	62438918	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62439158	62439200	62439158	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62439474	62439580	62439474	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62440302	62440397	62440302	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62440546	62440736	62440546	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62440831	62440900	62440831	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1
chr5_4	CDS	62441637	62441720	62441637	ID=Msa0862720-mRNA-1:cds;Parent=Msa0862720-mRNA-1

Gene Sequence

>Msa0862720

ATTGAAAATTCTTCTCCACGATCGATGTCAACAAAGAGTGATGCTTCATTTGTAGCTCCTCTCAGGGCTTCTACCCAGTTTAGCACCACTGCTCATATGATGGTGGACATGAAACGCCTTGTTATTGAACTTAGGAATCCAGATCTAAGAGCAAATGCTCTTCGTGTGCTTTCCAAGATGACGTCATTTCAGGAGCTTGCACCTTTATTGTGGAATTCTTTTGGTACTATTACAATACTTGTGCAAGAAATAATTTCAATATATCCTACTCTTTCACCACTAAATCTTACTCCAACACAATCAACTCGAATGTGCGATGTTCTTGCGCTACTTCTGTGTGTAGCATCTCACCCGGATACAAAGATGTCATTCCTCAATGCTAACATGCACTTATATTTATATCCATTCCTTCAAACGACAAGTAATTTAACACAATATGAGTGGTTGAGGCTTGGTAGTCTTGGAGTCATTGGTGCTTTGGTGAAGGTTAACACCAAAGAAGTCATGAGTTTCCTTCTTCCAAGTGAAATAATTCCACTATGCTTGGGTTGTATGGAAATCGACAAGGAGCCATCAAAATCTGTTGGAACATTTATCATTCATAAAATGTTGTTAGACGTTGATGGTTTGGCTTATGTTGGTGATACAGCAGAGCAATTTTTTACAGTAGCTCGAGTTTTTGACATGATGCTGTCAAGTTTTGAGAATCAACATTCACCTCGTTTGTTGAAGCTTATAATTCGATGCTATTCTCGTTTGTCTGAACATAGCAGGGCTCGCAGTGCATTAACAAGTTGTCTTCCAGACATTCTCAAAGATTCCAATTTCATCAATTGTCTTCATGAAGATTCAACAACTTGGAGGTGCATAAAAAAGTTGTATGAAAATCTTGGGATGAATCAAGCTTTTTTAGTACCTGGTGGATGA

Protein sequence

>Msa0862720

IENSSPRSMSTKSDASFVAPLRASTQFSTTAHMMVDMKRLVIELRNPDLRANALRVLSKMTSFQELAPLLWNSFGTITILVQEIISIYPTLSPLNLTPTQSTRMCDVLALLLCVASHPDTKMSFLNANMHLYLYPFLQTTSNLTQYEWLRLGSLGVIGALVKVNTKEVMSFLLPSEIIPLCLGCMEIDKEPSKSVGTFIIHKMLLDVDGLAYVGDTAEQFFTVARVFDMMLSSFENQHSPRLLKLIIRCYSRLSEHSRARSALTSCLPDILKDSNFINCLHEDSTTWRCIKKLYENLGMNQAFLVPGG*