AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0863650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863650 MtrunA17_Chr5g0425261 69.598 398 62 5 1 361 1 376 0.0 511
Msa0863650 MtrunA17_Chr5g0424801 69.036 394 71 4 1 361 1 376 0.0 509
Msa0863650 MtrunA17_Chr1g0178011 47.454 432 154 14 1 388 1 403 2.59e-109 328
Msa0863650 MtrunA17_Chr5g0424741 50.777 386 113 7 1 316 1 379 1.28e-108 328
Msa0863650 MtrunA17_Chr5g0424931 44.396 455 141 11 1 350 8 455 3.76e-104 317
Msa0863650 MtrunA17_Chr2g0289221 49.226 323 113 13 1 282 9 321 2.32e-81 253
Msa0863650 MtrunA17_Chr5g0417281 37.605 476 195 15 5 388 4 469 6.34e-77 246
Msa0863650 MtrunA17_Chr5g0417211 46.914 324 120 11 1 282 1 314 6.28e-73 233
Msa0863650 MtrunA17_Chr5g0436761 41.144 367 159 13 5 327 5 358 7.44e-69 224
Msa0863650 MtrunA17_Chr2g0277461 40.458 393 169 16 1 346 1 375 1.61e-67 220
Msa0863650 MtrunA17_Chr5g0425661 55.238 210 78 7 8 205 33 238 8.50e-64 204
Msa0863650 MtrunA17_Chr2g0277531 41.587 315 136 13 6 282 14 318 3.38e-60 197
Msa0863650 MtrunA17_Chr5g0424791 64.789 142 46 2 61 200 12 151 4.55e-49 162
Msa0863650 MtrunA17_Chr3g0115271 42.857 217 114 4 8 216 15 229 6.03e-45 163
Msa0863650 MtrunA17_Chr2g0326761 30.645 372 166 13 8 296 7 369 2.83e-40 151
Msa0863650 MtrunA17_Chr1g0181211 39.810 211 107 6 9 204 24 229 8.85e-37 141
Msa0863650 MtrunA17_Chr1g0199681 37.441 211 109 6 9 204 91 293 3.12e-34 134
Msa0863650 MtrunA17_Chr4g0028971 36.957 230 127 6 1 217 1 225 4.67e-34 133
Msa0863650 MtrunA17_Chr7g0264171 35.268 224 129 6 8 218 27 247 2.85e-33 130
Msa0863650 MtrunA17_Chr8g0385791 29.683 347 183 12 12 310 59 392 3.73e-33 131
Msa0863650 MtrunA17_Chr5g0425651 62.105 95 29 1 215 309 21 108 1.23e-32 119
Msa0863650 MtrunA17_Chr2g0276781 29.834 362 170 13 12 314 23 359 7.55e-32 127
Msa0863650 MtrunA17_Chr2g0285461 29.261 352 186 14 9 310 20 358 1.09e-31 127
Msa0863650 MtrunA17_Chr4g0009751 28.652 356 199 10 10 321 17 361 1.02e-30 123
Msa0863650 MtrunA17_Chr7g0239061 28.655 342 191 10 12 310 14 345 1.03e-30 124
Msa0863650 MtrunA17_Chr7g0264161 29.967 307 162 9 22 282 2 301 1.50e-30 119
Msa0863650 MtrunA17_Chr5g0433301 27.896 423 227 18 9 376 21 420 7.99e-30 121
Msa0863650 MtrunA17_Chr8g0376771 28.371 356 183 14 9 310 20 357 1.16e-28 118
Msa0863650 MtrunA17_Chr1g0156321 27.855 359 197 12 8 317 39 384 1.24e-28 118
Msa0863650 MtrunA17_Chr3g0109391 26.636 428 236 18 9 381 23 427 2.06e-28 117
Msa0863650 MtrunA17_Chr2g0301251 29.178 353 185 14 8 310 19 356 5.79e-28 116
Msa0863650 MtrunA17_Chr8g0346711 28.779 344 187 11 12 310 29 359 6.78e-28 115
Msa0863650 MtrunA17_Chr4g0070181 28.090 356 185 13 8 310 19 356 1.26e-27 115
Msa0863650 MtrunA17_Chr2g0282961 26.558 369 196 12 3 315 44 393 4.41e-26 110
Msa0863650 MtrunA17_Chr4g0046371 26.158 367 196 12 8 316 34 383 2.31e-25 108
Msa0863650 MtrunA17_Chr8g0389081 32.536 209 127 7 9 204 29 236 3.47e-23 102
Msa0863650 MtrunA17_Chr2g0326281 26.400 375 188 14 12 313 56 415 3.63e-20 92.8
Msa0863650 MtrunA17_Chr4g0029671 26.404 356 193 12 12 310 54 397 1.81e-19 90.5
Msa0863650 MtrunA17_Chr5g0419861 35.398 113 53 4 53 152 15 120 3.11e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0863650 AT1G77850.1 39.234 209 109 5 9 204 16 219 8.16e-41 152
Msa0863650 AT1G77850.2 39.234 209 109 5 9 204 16 219 8.54e-41 152
Msa0863650 AT3G61830.1 30.372 349 185 10 12 315 25 360 5.18e-36 139
Msa0863650 AT2G46530.1 30.029 343 184 8 12 310 21 351 5.35e-36 139
Msa0863650 AT2G46530.3 30.029 343 184 8 12 310 42 372 7.19e-36 139
Msa0863650 AT2G28350.2 33.858 254 141 7 3 233 1 250 8.52e-36 139
Msa0863650 AT2G28350.1 33.858 254 141 7 3 233 1 250 9.21e-36 139
Msa0863650 AT4G30080.1 29.146 398 193 14 8 324 15 404 3.44e-34 134
Msa0863650 AT5G62000.4 28.804 368 181 16 12 320 61 406 3.83e-32 129
Msa0863650 AT5G62000.2 28.804 368 181 16 12 320 61 406 4.55e-32 128
Msa0863650 AT5G62000.5 28.804 368 181 16 12 320 61 406 4.55e-32 128
Msa0863650 AT5G62000.3 28.804 368 181 16 12 320 61 406 4.55e-32 128
Msa0863650 AT5G62000.1 28.804 368 181 16 12 320 61 406 4.55e-32 128
Msa0863650 AT1G59750.2 28.857 350 181 11 12 310 22 354 1.28e-31 127
Msa0863650 AT1G59750.4 28.857 350 181 11 12 310 22 354 1.31e-31 127
Msa0863650 AT1G59750.1 28.857 350 181 11 12 310 22 354 1.68e-31 126
Msa0863650 AT1G59750.3 28.857 350 181 11 12 310 22 354 1.68e-31 126
Msa0863650 AT5G37020.2 29.096 354 184 15 9 310 19 357 5.98e-31 125
Msa0863650 AT5G37020.1 29.096 354 184 15 9 310 19 357 6.89e-31 125
Msa0863650 AT1G30330.1 28.732 355 184 12 9 310 20 358 1.42e-30 124
Msa0863650 AT1G30330.3 28.732 355 184 12 9 310 22 360 1.58e-30 124
Msa0863650 AT1G30330.2 28.732 355 184 12 9 310 22 360 1.58e-30 124
Msa0863650 AT1G34390.1 29.360 344 177 10 12 309 27 350 3.87e-30 122
Msa0863650 AT1G34410.1 29.480 346 176 12 12 309 27 352 9.37e-29 118
Msa0863650 AT1G35520.1 29.769 346 175 13 12 309 27 352 1.30e-28 117
Msa0863650 AT1G35240.1 29.971 347 173 13 12 309 27 352 3.22e-28 116
Msa0863650 AT4G23980.2 26.437 348 191 10 12 310 12 343 1.07e-27 115
Msa0863650 AT4G23980.1 26.437 348 191 10 12 310 12 343 1.10e-27 115
Msa0863650 AT1G34310.1 29.538 325 168 10 9 285 24 335 3.29e-27 113
Msa0863650 AT5G20730.2 28.011 357 182 13 9 310 21 357 7.14e-27 113
Msa0863650 AT1G35540.1 28.530 347 178 13 12 309 27 352 1.76e-26 111
Msa0863650 AT1G19220.1 27.887 355 185 13 9 310 20 356 2.51e-26 111
Msa0863650 AT2G33860.1 28.691 359 183 14 12 315 54 394 5.13e-26 110
Msa0863650 AT5G20730.1 27.528 356 186 13 9 310 21 358 7.20e-26 110
Msa0863650 AT5G20730.3 27.528 356 186 13 9 310 21 358 8.24e-26 110
Msa0863650 AT1G19850.2 28.255 361 196 13 7 317 38 385 1.52e-25 109
Msa0863650 AT1G19850.1 28.255 361 196 13 7 317 49 396 1.92e-25 108
Msa0863650 AT1G43950.1 32.843 204 117 6 12 203 27 222 4.31e-24 99.8
Msa0863650 AT3G61830.2 29.032 310 166 9 47 315 13 309 3.47e-23 101
Msa0863650 AT5G60450.2 31.651 218 127 7 8 204 37 253 7.33e-23 101
Msa0863650 AT5G60450.1 31.776 214 124 7 12 204 65 277 1.69e-22 100
Msa0863650 AT1G34170.2 28.875 329 176 14 12 309 25 326 3.27e-20 92.4
Msa0863650 AT1G34170.3 28.875 329 176 14 12 309 25 326 4.71e-20 92.4
Msa0863650 AT1G34170.1 27.350 351 179 14 12 309 25 352 7.57e-20 91.7
Msa0863650 AT5G37020.3 27.675 271 137 12 85 310 6 262 3.91e-15 77.8
Msa0863650 AT2G33860.2 27.236 246 123 9 114 315 4 237 1.24e-13 72.4

Find 114 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGCATTTCTGCCATATTT+TGG 0.133941 5_4:+63639925 None:intergenic
CTACTTCCCACAAGGTAATT+TGG 0.157056 5_4:-63639861 Msa0863650:CDS
TCTCTTTATCATAGGTTAAC+TGG 0.215844 5_4:-63638411 Msa0863650:intron
ATTCTTCTAATGTACCTAAT+TGG 0.268826 5_4:-63639052 Msa0863650:CDS
TGTTTCCATTGTCGGCTTCT+TGG 0.269207 5_4:+63639657 None:intergenic
TTGGCTCATTGGACCTATTA+TGG 0.290349 5_4:+63637947 None:intergenic
GGTTTGGATTCTGTGGGATA+TGG 0.299940 5_4:+63638359 None:intergenic
TTTGGATTCTGTGGGATATT+AGG 0.307838 5_4:+63638382 None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG 0.308376 5_4:+63637936 None:intergenic
TGCCAAGTATTGACTAGGTT+TGG 0.312049 5_4:+63638343 None:intergenic
GATCTTGCCCAAGCTTGATT+TGG 0.314401 5_4:-63639555 Msa0863650:CDS
TCCATTGTCGGCTTCTTGGC+CGG 0.335590 5_4:+63639661 None:intergenic
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5_4:-63639170 Msa0863650:CDS
CTTCTGTGGACCCCAAAATA+TGG 0.347094 5_4:-63639937 Msa0863650:CDS
CGTTGCCTCATAACCATAAT+AGG 0.348120 5_4:-63637960 Msa0863650:CDS
CTTGGTCAGTTACGGGAGTT+AGG 0.352495 5_4:+63639705 None:intergenic
CCATTGTCGGCTTCTTGGCC+GGG 0.370880 5_4:+63639662 None:intergenic
TAAACTTTAGAGTGAACCTT+TGG 0.372785 5_4:+63639884 None:intergenic
ACAAAAGAGATTGTCCCTTT+AGG 0.373244 5_4:+63639083 None:intergenic
ATGAATCTGATACAGATAAA+TGG 0.381071 5_4:+63638097 None:intergenic
CCACAGGAGGAGGAGGTTCT+TGG 0.381303 5_4:+63639687 None:intergenic
AACAAGATTGTTTCCATTGT+CGG 0.382825 5_4:+63639649 None:intergenic
AGATTTCCAACCAATCTTCA+TGG 0.383662 5_4:+63639172 None:intergenic
GATAAGCATGACGGATTCAC+TGG 0.385768 5_4:-63638060 Msa0863650:CDS
AGGAGGTTCTTGGTCAGTTA+CGG 0.395498 5_4:+63639697 None:intergenic
CCTCCTCCTCCTGTGGTTCC+CGG 0.396767 5_4:-63639680 Msa0863650:CDS
ACCTTTGGAATCTCGACGTC+GGG 0.402652 5_4:+63639899 None:intergenic
CTCTTTATCATAGGTTAACT+GGG 0.403608 5_4:-63638410 Msa0863650:intron
GGAGGTTCTTGGTCAGTTAC+GGG 0.408872 5_4:+63639698 None:intergenic
ATGGTGATTGTGGCAGCATT+AGG 0.410282 5_4:+63639821 None:intergenic
GGATTCTGTGGGATATGGTT+TGG 0.411156 5_4:+63638364 None:intergenic
ACCTCAAGCATGCGCCAATT+AGG 0.414075 5_4:+63639038 None:intergenic
TTCCTCCTTCATTCCTATGC+AGG 0.431062 5_4:-63638139 Msa0863650:CDS
GACTCGTCCAAATCAAGCTT+GGG 0.438970 5_4:+63639548 None:intergenic
TCATTCCTATGCAGGGAGTC+AGG 0.445797 5_4:-63638131 Msa0863650:CDS
TTGGACCTATTATGGTTATG+AGG 0.446632 5_4:+63637955 None:intergenic
TGGAATCTCGACGTCGGGGC+CGG 0.458091 5_4:+63639904 None:intergenic
TACGGGAGTTAGGAGCAGTT+TGG 0.459974 5_4:+63639715 None:intergenic
TGGCCGGGAACCACAGGAGG+AGG 0.465408 5_4:+63639677 None:intergenic
CATGTTCCAAATTACCTTGT+GGG 0.465475 5_4:+63639855 None:intergenic
CAATCTGCCAAGTATTGACT+AGG 0.474525 5_4:+63638338 None:intergenic
AATGAAAACAACAGAATCGT+TGG 0.475212 5_4:+63639406 None:intergenic
GTTGACGATGCCATGAAGAT+TGG 0.477758 5_4:-63639182 Msa0863650:CDS
TATAAGTGTACCTCCATTCT+CGG 0.482427 5_4:+63639495 None:intergenic
GGGATATGGTTTGGATTCTG+TGG 0.482821 5_4:+63638373 None:intergenic
GAAGATTCATCTTTCTTCAA+AGG 0.488166 5_4:+63639131 None:intergenic
TCTTCCTCAGCCACCTTCTG+TGG 0.490509 5_4:-63639951 Msa0863650:CDS
AGACTCGTCCAAATCAAGCT+TGG 0.490804 5_4:+63639547 None:intergenic
TGACATATTCTCAGCCTAAA+GGG 0.490948 5_4:-63639097 Msa0863650:CDS
CCGGGAACCACAGGAGGAGG+AGG 0.492789 5_4:+63639680 None:intergenic
GCTTCTTGGCCGGGAACCAC+AGG 0.493522 5_4:+63639671 None:intergenic
ATGACATATTCTCAGCCTAA+AGG 0.493756 5_4:-63639098 Msa0863650:CDS
ATCCAAACCTAGTCAATACT+TGG 0.494257 5_4:-63638345 Msa0863650:CDS
CAGTTTGGCAAAGACCTCTT+CGG 0.495832 5_4:+63639730 None:intergenic
TTATCATAGGTTAACTGGGA+TGG 0.500782 5_4:-63638406 Msa0863650:intron
TTGACTAGGTTTGGATTCTG+TGG 0.502251 5_4:+63638352 None:intergenic
TGACTAGGTTTGGATTCTGT+GGG 0.503890 5_4:+63638353 None:intergenic
CGATATTTGTCGGAATTCAC+AGG 0.503905 5_4:-63639367 Msa0863650:CDS
TGCTTCATCCGTAGTGAAGT+TGG 0.506448 5_4:+63639340 None:intergenic
AAGATACCTCACTTGGTGCT+TGG 0.507669 5_4:+63637928 None:intergenic
AATTCCGACAAATATCGTTC+CGG 0.511703 5_4:+63639373 None:intergenic
GACTCCCTGCATAGGAATGA+AGG 0.513722 5_4:+63638134 None:intergenic
GGATATGGTTTGGATTCTGT+GGG 0.517038 5_4:+63638374 None:intergenic
ACTGGGAATAGTTCAATGGC+AGG 0.519560 5_4:-63638042 Msa0863650:CDS
TCCTCCTTCATTCCTATGCA+GGG 0.528220 5_4:-63638138 Msa0863650:CDS
GGCAGAGACGATGCATGGAA+TGG 0.529105 5_4:+63639778 None:intergenic
GAGACGATGCATGGAATGGA+TGG 0.532282 5_4:+63639782 None:intergenic
CCAAGGTTTAGCTCTATGTC+AGG 0.539866 5_4:+63638003 None:intergenic
AAGGAGGAAGTTGACGGTGG+AGG 0.544243 5_4:+63638153 None:intergenic
AAACTCAGTAGCTTACATAC+TGG 0.544769 5_4:-63639464 Msa0863650:CDS
CCAAGAACCTCCTCCTCCTG+TGG 0.552145 5_4:-63639687 Msa0863650:CDS
ACCTAATTGGCGCATGCTTG+AGG 0.556653 5_4:-63639039 Msa0863650:intron
ACGATGCCATGAAGATTGGT+TGG 0.558168 5_4:-63639178 Msa0863650:CDS
AACTTCACTACGGATGAAGC+AGG 0.561010 5_4:-63639338 Msa0863650:intron
TCTTGGCCGGGAACCACAGG+AGG 0.561393 5_4:+63639674 None:intergenic
AAAATATGGCAGAAATGCGC+CGG 0.563934 5_4:-63639923 Msa0863650:CDS
GGGTCCACAGAAGGTGGCTG+AGG 0.567295 5_4:+63639947 None:intergenic
GCAAAGACCTCTTCGGTGTG+AGG 0.573732 5_4:+63639737 None:intergenic
AGTTCAATGGCAGGGTTGAG+TGG 0.576646 5_4:-63638033 Msa0863650:CDS
TCTGCCGGAACGATATTTGT+CGG 0.582098 5_4:-63639377 Msa0863650:CDS
TCATGCCTGACTCCCTGCAT+AGG 0.582427 5_4:+63638126 None:intergenic
ATTCACTGGGAATAGTTCAA+TGG 0.583674 5_4:-63638046 Msa0863650:CDS
TGGACGGTAACGATCAAGAA+TGG 0.583957 5_4:+63639802 None:intergenic
CCTGACATAGAGCTAAACCT+TGG 0.585110 5_4:-63638003 Msa0863650:CDS
GCATGTTCCAAATTACCTTG+TGG 0.586505 5_4:+63639854 None:intergenic
CCGACCTTAAAATCCGAGAA+TGG 0.590215 5_4:-63639508 Msa0863650:CDS
ATGAAGGAGGAAGTTGACGG+TGG 0.590817 5_4:+63638150 None:intergenic
TCAGTAGCTTACATACTGGC+TGG 0.593404 5_4:-63639460 Msa0863650:CDS
TGTTGATCCTCACACCGAAG+AGG 0.601436 5_4:-63639744 Msa0863650:CDS
TCAACGGCAGAGACGATGCA+TGG 0.604313 5_4:+63639773 None:intergenic
GCCAATGAAGATACCTCACT+TGG 0.608165 5_4:+63637921 None:intergenic
ACGATCAAGAATGGTGATTG+TGG 0.610673 5_4:+63639811 None:intergenic
CCCGGCCAAGAAGCCGACAA+TGG 0.614065 5_4:-63639662 Msa0863650:CDS
CGATGCATGGAATGGATGGA+CGG 0.620709 5_4:+63639786 None:intergenic
CTGGGAATAGTTCAATGGCA+GGG 0.622015 5_4:-63638041 Msa0863650:CDS
CTAAACCTTGGCAGTCCTAG+AGG 0.624031 5_4:-63637991 Msa0863650:CDS
GGAATGAAGGAGGAAGTTGA+CGG 0.626658 5_4:+63638147 None:intergenic
CAGGAATACCAACTTCACTA+CGG 0.628890 5_4:-63639348 Msa0863650:CDS
CAGCACCTCTAGGACTGCCA+AGG 0.629336 5_4:+63637986 None:intergenic
ATAAGCATGACGGATTCACT+GGG 0.631573 5_4:-63638059 Msa0863650:CDS
ATTATCCGACAGCTAGTGGT+TGG 0.634972 5_4:-63639232 Msa0863650:intron
AACCTTTGGAATCTCGACGT+CGG 0.636840 5_4:+63639898 None:intergenic
GGCAACGAGTCAGCACCTCT+AGG 0.637822 5_4:+63637976 None:intergenic
TAAGCTACTGAGTTTCGCGT+AGG 0.640847 5_4:+63639472 None:intergenic
CCCCGACGTCGAGATTCCAA+AGG 0.652414 5_4:-63639900 Msa0863650:CDS
AATGAGCCAAGCACCAAGTG+AGG 0.655123 5_4:-63637934 None:intergenic
AGGATCAACAAAGAGATCAA+CGG 0.658354 5_4:+63639757 None:intergenic
ACCTTAAAATCCGAGAATGG+AGG 0.663409 5_4:-63639505 Msa0863650:CDS
AAAGTTTACTACTTCCCACA+AGG 0.669890 5_4:-63639869 Msa0863650:CDS
AGGTGGCTGAGGAAGAGACA+TGG 0.686110 5_4:+63639958 None:intergenic
TCCCTGCATAGGAATGAAGG+AGG 0.687917 5_4:+63638137 None:intergenic
CCTTTGGAATCTCGACGTCG+GGG 0.690099 5_4:+63639900 None:intergenic
TTGTGTGAGAGTCTTGACAC+AGG 0.695384 5_4:+63639625 None:intergenic
ATCAAGTCAGAGCATTCACG+AGG 0.745454 5_4:+63639575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATCAAATAATCTTATTA+TGG + chr5_4:63638960-63638979 None:intergenic 15.0%
!!! ATTTTTTATCTCTTTATCAT+AGG - chr5_4:63639473-63639492 Msa0863650:CDS 15.0%
!! TCAATCAAATAATCTTATTA+TGG + chr5_4:63638960-63638979 None:intergenic 15.0%
!!! ATTTTTTATCTCTTTATCAT+AGG - chr5_4:63639473-63639492 Msa0863650:CDS 15.0%
!! TCTTATTATGGATTCAAATT+TGG + chr5_4:63638948-63638967 None:intergenic 20.0%
!! CTAAAATTATGAAACTTAGT+AGG - chr5_4:63639022-63639041 Msa0863650:intron 20.0%
!!! CTTAATTTTCGAATTACATT+TGG + chr5_4:63639075-63639094 None:intergenic 20.0%
!! TCTTATTATGGATTCAAATT+TGG + chr5_4:63638948-63638967 None:intergenic 20.0%
!! CTAAAATTATGAAACTTAGT+AGG - chr5_4:63639022-63639041 Msa0863650:intron 20.0%
!!! CTTAATTTTCGAATTACATT+TGG + chr5_4:63639075-63639094 None:intergenic 20.0%
! ATTCTTCTAATGTACCTAAT+TGG - chr5_4:63638840-63638859 Msa0863650:intron 25.0%
!!! GTACTTATGCTATCTTATTT+TGG - chr5_4:63638875-63638894 Msa0863650:intron 25.0%
! GGAATTATTAATGTTAGAGA+TGG + chr5_4:63639122-63639141 None:intergenic 25.0%
! TAGGGAGTTACATATAAAAA+CGG + chr5_4:63639236-63639255 None:intergenic 25.0%
! TACAATGAAAAATGCTTAGA+AGG + chr5_4:63639313-63639332 None:intergenic 25.0%
! ATGAATCTGATACAGATAAA+TGG + chr5_4:63639798-63639817 None:intergenic 25.0%
! ATTCTTCTAATGTACCTAAT+TGG - chr5_4:63638840-63638859 Msa0863650:intron 25.0%
!!! GTACTTATGCTATCTTATTT+TGG - chr5_4:63638875-63638894 Msa0863650:intron 25.0%
! GGAATTATTAATGTTAGAGA+TGG + chr5_4:63639122-63639141 None:intergenic 25.0%
! TAGGGAGTTACATATAAAAA+CGG + chr5_4:63639236-63639255 None:intergenic 25.0%
! TACAATGAAAAATGCTTAGA+AGG + chr5_4:63639313-63639332 None:intergenic 25.0%
! ATGAATCTGATACAGATAAA+TGG + chr5_4:63639798-63639817 None:intergenic 25.0%
!! TAAACTTTAGAGTGAACCTT+TGG + chr5_4:63638011-63638030 None:intergenic 30.0%
AACAAGATTGTTTCCATTGT+CGG + chr5_4:63638246-63638265 None:intergenic 30.0%
AATGAAAACAACAGAATCGT+TGG + chr5_4:63638489-63638508 None:intergenic 30.0%
! GTTTTCATTAAAAACTCTGC+CGG - chr5_4:63638500-63638519 Msa0863650:intron 30.0%
GAAGATTCATCTTTCTTCAA+AGG + chr5_4:63638764-63638783 None:intergenic 30.0%
TCTATCAAGTACAAGAACAA+GGG + chr5_4:63639143-63639162 None:intergenic 30.0%
ATCTATCAAGTACAAGAACA+AGG + chr5_4:63639144-63639163 None:intergenic 30.0%
AGGGAGTTACATATAAAAAC+GGG + chr5_4:63639235-63639254 None:intergenic 30.0%
TCAAGATTCTACTTAGCATT+AGG + chr5_4:63639342-63639361 None:intergenic 30.0%
! GCTAAGTAGAATCTTGATTT+TGG - chr5_4:63639345-63639364 Msa0863650:CDS 30.0%
TCTCTTTATCATAGGTTAAC+TGG - chr5_4:63639481-63639500 Msa0863650:CDS 30.0%
CTCTTTATCATAGGTTAACT+GGG - chr5_4:63639482-63639501 Msa0863650:CDS 30.0%
!!! GAAGTTGATTTTTTATTGGG+GGG + chr5_4:63639629-63639648 None:intergenic 30.0%
!!! GGAAGTTGATTTTTTATTGG+GGG + chr5_4:63639630-63639649 None:intergenic 30.0%
!!! GGGAAGTTGATTTTTTATTG+GGG + chr5_4:63639631-63639650 None:intergenic 30.0%
!!! GGGGAAGTTGATTTTTTATT+GGG + chr5_4:63639632-63639651 None:intergenic 30.0%
!! AAAGTCTAGGACTTTTTGTT+GGG + chr5_4:63639654-63639673 None:intergenic 30.0%
! TAGAGAATGTGGAATTTGTT+GGG + chr5_4:63639692-63639711 None:intergenic 30.0%
TTAGAGAATGTGGAATTTGT+TGG + chr5_4:63639693-63639712 None:intergenic 30.0%
TGTAATTTAGGCAGTGTAAT+TGG + chr5_4:63639718-63639737 None:intergenic 30.0%
!! GTTTTGAATGATAAGCATGA+CGG - chr5_4:63639823-63639842 Msa0863650:CDS 30.0%
!! TAAACTTTAGAGTGAACCTT+TGG + chr5_4:63638011-63638030 None:intergenic 30.0%
AACAAGATTGTTTCCATTGT+CGG + chr5_4:63638246-63638265 None:intergenic 30.0%
AATGAAAACAACAGAATCGT+TGG + chr5_4:63638489-63638508 None:intergenic 30.0%
! GTTTTCATTAAAAACTCTGC+CGG - chr5_4:63638500-63638519 Msa0863650:intron 30.0%
GAAGATTCATCTTTCTTCAA+AGG + chr5_4:63638764-63638783 None:intergenic 30.0%
TCTATCAAGTACAAGAACAA+GGG + chr5_4:63639143-63639162 None:intergenic 30.0%
ATCTATCAAGTACAAGAACA+AGG + chr5_4:63639144-63639163 None:intergenic 30.0%
AGGGAGTTACATATAAAAAC+GGG + chr5_4:63639235-63639254 None:intergenic 30.0%
TCAAGATTCTACTTAGCATT+AGG + chr5_4:63639342-63639361 None:intergenic 30.0%
! GCTAAGTAGAATCTTGATTT+TGG - chr5_4:63639345-63639364 Msa0863650:CDS 30.0%
TCTCTTTATCATAGGTTAAC+TGG - chr5_4:63639481-63639500 Msa0863650:CDS 30.0%
CTCTTTATCATAGGTTAACT+GGG - chr5_4:63639482-63639501 Msa0863650:CDS 30.0%
!!! GAAGTTGATTTTTTATTGGG+GGG + chr5_4:63639629-63639648 None:intergenic 30.0%
!!! GGAAGTTGATTTTTTATTGG+GGG + chr5_4:63639630-63639649 None:intergenic 30.0%
!!! GGGAAGTTGATTTTTTATTG+GGG + chr5_4:63639631-63639650 None:intergenic 30.0%
!!! GGGGAAGTTGATTTTTTATT+GGG + chr5_4:63639632-63639651 None:intergenic 30.0%
!! AAAGTCTAGGACTTTTTGTT+GGG + chr5_4:63639654-63639673 None:intergenic 30.0%
! TAGAGAATGTGGAATTTGTT+GGG + chr5_4:63639692-63639711 None:intergenic 30.0%
TTAGAGAATGTGGAATTTGT+TGG + chr5_4:63639693-63639712 None:intergenic 30.0%
TGTAATTTAGGCAGTGTAAT+TGG + chr5_4:63639718-63639737 None:intergenic 30.0%
!! GTTTTGAATGATAAGCATGA+CGG - chr5_4:63639823-63639842 Msa0863650:CDS 30.0%
AAAGTTTACTACTTCCCACA+AGG - chr5_4:63638023-63638042 Msa0863650:CDS 35.0%
CATGTTCCAAATTACCTTGT+GGG + chr5_4:63638040-63638059 None:intergenic 35.0%
AGGATCAACAAAGAGATCAA+CGG + chr5_4:63638138-63638157 None:intergenic 35.0%
TATAAGTGTACCTCCATTCT+CGG + chr5_4:63638400-63638419 None:intergenic 35.0%
AAACTCAGTAGCTTACATAC+TGG - chr5_4:63638428-63638447 Msa0863650:intron 35.0%
AATTCCGACAAATATCGTTC+CGG + chr5_4:63638522-63638541 None:intergenic 35.0%
AGATTTCCAACCAATCTTCA+TGG + chr5_4:63638723-63638742 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG - chr5_4:63638722-63638741 Msa0863650:intron 35.0%
ATGACATATTCTCAGCCTAA+AGG - chr5_4:63638794-63638813 Msa0863650:intron 35.0%
TGACATATTCTCAGCCTAAA+GGG - chr5_4:63638795-63638814 Msa0863650:intron 35.0%
ACAAAAGAGATTGTCCCTTT+AGG + chr5_4:63638812-63638831 None:intergenic 35.0%
! CATTTGGAACTTATCCTACA+GGG + chr5_4:63639059-63639078 None:intergenic 35.0%
! ACATTTGGAACTTATCCTAC+AGG + chr5_4:63639060-63639079 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG - chr5_4:63639486-63639505 Msa0863650:CDS 35.0%
TTTGGATTCTGTGGGATATT+AGG + chr5_4:63639513-63639532 None:intergenic 35.0%
ATCCAAACCTAGTCAATACT+TGG - chr5_4:63639547-63639566 Msa0863650:CDS 35.0%
!!! GGGGGAAGTTGATTTTTTAT+TGG + chr5_4:63639633-63639652 None:intergenic 35.0%
!! AAGTCTAGGACTTTTTGTTG+GGG + chr5_4:63639653-63639672 None:intergenic 35.0%
!! GAAAGTCTAGGACTTTTTGT+TGG + chr5_4:63639655-63639674 None:intergenic 35.0%
!! AGAGAATGTGGAATTTGTTG+GGG + chr5_4:63639691-63639710 None:intergenic 35.0%
GTAATTGGCATTAGAGAATG+TGG + chr5_4:63639703-63639722 None:intergenic 35.0%
ATTCACTGGGAATAGTTCAA+TGG - chr5_4:63639846-63639865 Msa0863650:CDS 35.0%
TTGGACCTATTATGGTTATG+AGG + chr5_4:63639940-63639959 None:intergenic 35.0%
AAAGTTTACTACTTCCCACA+AGG - chr5_4:63638023-63638042 Msa0863650:CDS 35.0%
CATGTTCCAAATTACCTTGT+GGG + chr5_4:63638040-63638059 None:intergenic 35.0%
AGGATCAACAAAGAGATCAA+CGG + chr5_4:63638138-63638157 None:intergenic 35.0%
TATAAGTGTACCTCCATTCT+CGG + chr5_4:63638400-63638419 None:intergenic 35.0%
AAACTCAGTAGCTTACATAC+TGG - chr5_4:63638428-63638447 Msa0863650:intron 35.0%
AATTCCGACAAATATCGTTC+CGG + chr5_4:63638522-63638541 None:intergenic 35.0%
AGATTTCCAACCAATCTTCA+TGG + chr5_4:63638723-63638742 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG - chr5_4:63638722-63638741 Msa0863650:intron 35.0%
ATGACATATTCTCAGCCTAA+AGG - chr5_4:63638794-63638813 Msa0863650:intron 35.0%
TGACATATTCTCAGCCTAAA+GGG - chr5_4:63638795-63638814 Msa0863650:intron 35.0%
ACAAAAGAGATTGTCCCTTT+AGG + chr5_4:63638812-63638831 None:intergenic 35.0%
! CATTTGGAACTTATCCTACA+GGG + chr5_4:63639059-63639078 None:intergenic 35.0%
! ACATTTGGAACTTATCCTAC+AGG + chr5_4:63639060-63639079 None:intergenic 35.0%
TTATCATAGGTTAACTGGGA+TGG - chr5_4:63639486-63639505 Msa0863650:CDS 35.0%
TTTGGATTCTGTGGGATATT+AGG + chr5_4:63639513-63639532 None:intergenic 35.0%
ATCCAAACCTAGTCAATACT+TGG - chr5_4:63639547-63639566 Msa0863650:CDS 35.0%
!!! GGGGGAAGTTGATTTTTTAT+TGG + chr5_4:63639633-63639652 None:intergenic 35.0%
!! AAGTCTAGGACTTTTTGTTG+GGG + chr5_4:63639653-63639672 None:intergenic 35.0%
!! GAAAGTCTAGGACTTTTTGT+TGG + chr5_4:63639655-63639674 None:intergenic 35.0%
!! AGAGAATGTGGAATTTGTTG+GGG + chr5_4:63639691-63639710 None:intergenic 35.0%
GTAATTGGCATTAGAGAATG+TGG + chr5_4:63639703-63639722 None:intergenic 35.0%
ATTCACTGGGAATAGTTCAA+TGG - chr5_4:63639846-63639865 Msa0863650:CDS 35.0%
TTGGACCTATTATGGTTATG+AGG + chr5_4:63639940-63639959 None:intergenic 35.0%
! CGCATTTCTGCCATATTTTG+GGG + chr5_4:63637968-63637987 None:intergenic 40.0%
! GCGCATTTCTGCCATATTTT+GGG + chr5_4:63637969-63637988 None:intergenic 40.0%
AAAATATGGCAGAAATGCGC+CGG - chr5_4:63637969-63637988 Msa0863650:CDS 40.0%
CTACTTCCCACAAGGTAATT+TGG - chr5_4:63638031-63638050 Msa0863650:CDS 40.0%
GCATGTTCCAAATTACCTTG+TGG + chr5_4:63638041-63638060 None:intergenic 40.0%
ACGATCAAGAATGGTGATTG+TGG + chr5_4:63638084-63638103 None:intergenic 40.0%
!!! CCATTCTCGGATTTTAAGGT+CGG + chr5_4:63638387-63638406 None:intergenic 40.0%
ACCTTAAAATCCGAGAATGG+AGG - chr5_4:63638387-63638406 Msa0863650:CDS 40.0%
! ACCTCCATTCTCGGATTTTA+AGG + chr5_4:63638391-63638410 None:intergenic 40.0%
CGATATTTGTCGGAATTCAC+AGG - chr5_4:63638525-63638544 Msa0863650:intron 40.0%
CAGGAATACCAACTTCACTA+CGG - chr5_4:63638544-63638563 Msa0863650:intron 40.0%
ATGAAGCAGGTGAATAAGGA+GGG - chr5_4:63638567-63638586 Msa0863650:intron 40.0%
AGGGAACTTAACTGAGAAAG+TGG - chr5_4:63638586-63638605 Msa0863650:intron 40.0%
!!! GAAAGTGGTTTTAGATGCAG+CGG - chr5_4:63638601-63638620 Msa0863650:intron 40.0%
CTATTGCAGCAAGTCAAGTA+GGG + chr5_4:63639254-63639273 None:intergenic 40.0%
ACTATTGCAGCAAGTCAAGT+AGG + chr5_4:63639255-63639274 None:intergenic 40.0%
! GGATATGGTTTGGATTCTGT+GGG + chr5_4:63639521-63639540 None:intergenic 40.0%
TGACTAGGTTTGGATTCTGT+GGG + chr5_4:63639542-63639561 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+TGG + chr5_4:63639543-63639562 None:intergenic 40.0%
!! TGCCAAGTATTGACTAGGTT+TGG + chr5_4:63639552-63639571 None:intergenic 40.0%
!! CAATCTGCCAAGTATTGACT+AGG + chr5_4:63639557-63639576 None:intergenic 40.0%
! TTTTATTGGGGGGAAGTTGA+TGG + chr5_4:63639619-63639638 None:intergenic 40.0%
!! AGTCTAGGACTTTTTGTTGG+GGG + chr5_4:63639652-63639671 None:intergenic 40.0%
! GAAGAACTCTGAGAAAGTCT+AGG + chr5_4:63639667-63639686 None:intergenic 40.0%
!! AGAATGTGGAATTTGTTGGG+GGG + chr5_4:63639689-63639708 None:intergenic 40.0%
!! GAGAATGTGGAATTTGTTGG+GGG + chr5_4:63639690-63639709 None:intergenic 40.0%
!! ATAAGCATGACGGATTCACT+GGG - chr5_4:63639833-63639852 Msa0863650:CDS 40.0%
CGTTGCCTCATAACCATAAT+AGG - chr5_4:63639932-63639951 Msa0863650:CDS 40.0%
TTGGCTCATTGGACCTATTA+TGG + chr5_4:63639948-63639967 None:intergenic 40.0%
! CGCATTTCTGCCATATTTTG+GGG + chr5_4:63637968-63637987 None:intergenic 40.0%
! GCGCATTTCTGCCATATTTT+GGG + chr5_4:63637969-63637988 None:intergenic 40.0%
AAAATATGGCAGAAATGCGC+CGG - chr5_4:63637969-63637988 Msa0863650:CDS 40.0%
CTACTTCCCACAAGGTAATT+TGG - chr5_4:63638031-63638050 Msa0863650:CDS 40.0%
GCATGTTCCAAATTACCTTG+TGG + chr5_4:63638041-63638060 None:intergenic 40.0%
ACGATCAAGAATGGTGATTG+TGG + chr5_4:63638084-63638103 None:intergenic 40.0%
!!! CCATTCTCGGATTTTAAGGT+CGG + chr5_4:63638387-63638406 None:intergenic 40.0%
ACCTTAAAATCCGAGAATGG+AGG - chr5_4:63638387-63638406 Msa0863650:CDS 40.0%
! ACCTCCATTCTCGGATTTTA+AGG + chr5_4:63638391-63638410 None:intergenic 40.0%
CGATATTTGTCGGAATTCAC+AGG - chr5_4:63638525-63638544 Msa0863650:intron 40.0%
CAGGAATACCAACTTCACTA+CGG - chr5_4:63638544-63638563 Msa0863650:intron 40.0%
ATGAAGCAGGTGAATAAGGA+GGG - chr5_4:63638567-63638586 Msa0863650:intron 40.0%
AGGGAACTTAACTGAGAAAG+TGG - chr5_4:63638586-63638605 Msa0863650:intron 40.0%
!!! GAAAGTGGTTTTAGATGCAG+CGG - chr5_4:63638601-63638620 Msa0863650:intron 40.0%
CTATTGCAGCAAGTCAAGTA+GGG + chr5_4:63639254-63639273 None:intergenic 40.0%
ACTATTGCAGCAAGTCAAGT+AGG + chr5_4:63639255-63639274 None:intergenic 40.0%
! GGATATGGTTTGGATTCTGT+GGG + chr5_4:63639521-63639540 None:intergenic 40.0%
TGACTAGGTTTGGATTCTGT+GGG + chr5_4:63639542-63639561 None:intergenic 40.0%
TTGACTAGGTTTGGATTCTG+TGG + chr5_4:63639543-63639562 None:intergenic 40.0%
!! TGCCAAGTATTGACTAGGTT+TGG + chr5_4:63639552-63639571 None:intergenic 40.0%
!! CAATCTGCCAAGTATTGACT+AGG + chr5_4:63639557-63639576 None:intergenic 40.0%
! TTTTATTGGGGGGAAGTTGA+TGG + chr5_4:63639619-63639638 None:intergenic 40.0%
!! AGTCTAGGACTTTTTGTTGG+GGG + chr5_4:63639652-63639671 None:intergenic 40.0%
! GAAGAACTCTGAGAAAGTCT+AGG + chr5_4:63639667-63639686 None:intergenic 40.0%
!! AGAATGTGGAATTTGTTGGG+GGG + chr5_4:63639689-63639708 None:intergenic 40.0%
!! GAGAATGTGGAATTTGTTGG+GGG + chr5_4:63639690-63639709 None:intergenic 40.0%
!! ATAAGCATGACGGATTCACT+GGG - chr5_4:63639833-63639852 Msa0863650:CDS 40.0%
CGTTGCCTCATAACCATAAT+AGG - chr5_4:63639932-63639951 Msa0863650:CDS 40.0%
TTGGCTCATTGGACCTATTA+TGG + chr5_4:63639948-63639967 None:intergenic 40.0%
!!! CATATTTTGGGGTCCACAGA+AGG + chr5_4:63637957-63637976 None:intergenic 45.0%
CTTCTGTGGACCCCAAAATA+TGG - chr5_4:63637955-63637974 Msa0863650:CDS 45.0%
! GGCGCATTTCTGCCATATTT+TGG + chr5_4:63637970-63637989 None:intergenic 45.0%
!! AACCTTTGGAATCTCGACGT+CGG + chr5_4:63637997-63638016 None:intergenic 45.0%
ATGGTGATTGTGGCAGCATT+AGG + chr5_4:63638074-63638093 None:intergenic 45.0%
TGGACGGTAACGATCAAGAA+TGG + chr5_4:63638093-63638112 None:intergenic 45.0%
CAGTTTGGCAAAGACCTCTT+CGG + chr5_4:63638165-63638184 None:intergenic 45.0%
AGGAGGTTCTTGGTCAGTTA+CGG + chr5_4:63638198-63638217 None:intergenic 45.0%
!! TGTTTCCATTGTCGGCTTCT+TGG + chr5_4:63638238-63638257 None:intergenic 45.0%
TTGTGTGAGAGTCTTGACAC+AGG + chr5_4:63638270-63638289 None:intergenic 45.0%
! ATCAAGTCAGAGCATTCACG+AGG + chr5_4:63638320-63638339 None:intergenic 45.0%
GATCTTGCCCAAGCTTGATT+TGG - chr5_4:63638337-63638356 Msa0863650:CDS 45.0%
GACTCGTCCAAATCAAGCTT+GGG + chr5_4:63638347-63638366 None:intergenic 45.0%
AGACTCGTCCAAATCAAGCT+TGG + chr5_4:63638348-63638367 None:intergenic 45.0%
CCGACCTTAAAATCCGAGAA+TGG - chr5_4:63638384-63638403 Msa0863650:CDS 45.0%
TAAGCTACTGAGTTTCGCGT+AGG + chr5_4:63638423-63638442 None:intergenic 45.0%
TCAGTAGCTTACATACTGGC+TGG - chr5_4:63638432-63638451 Msa0863650:intron 45.0%
TCTGCCGGAACGATATTTGT+CGG - chr5_4:63638515-63638534 Msa0863650:intron 45.0%
TGCTTCATCCGTAGTGAAGT+TGG + chr5_4:63638555-63638574 None:intergenic 45.0%
AACTTCACTACGGATGAAGC+AGG - chr5_4:63638554-63638573 Msa0863650:intron 45.0%
ACGGATGAAGCAGGTGAATA+AGG - chr5_4:63638563-63638582 Msa0863650:intron 45.0%
GATGAAGCAGGTGAATAAGG+AGG - chr5_4:63638566-63638585 Msa0863650:intron 45.0%
GTGTATTATCCGACAGCTAG+TGG - chr5_4:63638656-63638675 Msa0863650:intron 45.0%
ATTATCCGACAGCTAGTGGT+TGG - chr5_4:63638660-63638679 Msa0863650:intron 45.0%
! TAGTGGTTGGCGAGATTTTG+TGG - chr5_4:63638673-63638692 Msa0863650:intron 45.0%
GTTGACGATGCCATGAAGAT+TGG - chr5_4:63638710-63638729 Msa0863650:intron 45.0%
ACGATGCCATGAAGATTGGT+TGG - chr5_4:63638714-63638733 Msa0863650:intron 45.0%
! GGGATATGGTTTGGATTCTG+TGG + chr5_4:63639522-63639541 None:intergenic 45.0%
GGATTCTGTGGGATATGGTT+TGG + chr5_4:63639531-63639550 None:intergenic 45.0%
GGTTTGGATTCTGTGGGATA+TGG + chr5_4:63639515-63639534 None:intergenic 45.0%
!! GTCTAGGACTTTTTGTTGGG+GGG + chr5_4:63639651-63639670 None:intergenic 45.0%
GGAATGAAGGAGGAAGTTGA+CGG + chr5_4:63639748-63639767 None:intergenic 45.0%
TTCCTCCTTCATTCCTATGC+AGG - chr5_4:63639753-63639772 Msa0863650:CDS 45.0%
TCCTCCTTCATTCCTATGCA+GGG - chr5_4:63639754-63639773 Msa0863650:CDS 45.0%
!! GATAAGCATGACGGATTCAC+TGG - chr5_4:63639832-63639851 Msa0863650:CDS 45.0%
ACTGGGAATAGTTCAATGGC+AGG - chr5_4:63639850-63639869 Msa0863650:CDS 45.0%
CTGGGAATAGTTCAATGGCA+GGG - chr5_4:63639851-63639870 Msa0863650:CDS 45.0%
!! CCAAGGTTTAGCTCTATGTC+AGG + chr5_4:63639892-63639911 None:intergenic 45.0%
CCTGACATAGAGCTAAACCT+TGG - chr5_4:63639889-63639908 Msa0863650:CDS 45.0%
!!! CATATTTTGGGGTCCACAGA+AGG + chr5_4:63637957-63637976 None:intergenic 45.0%
CTTCTGTGGACCCCAAAATA+TGG - chr5_4:63637955-63637974 Msa0863650:CDS 45.0%
! GGCGCATTTCTGCCATATTT+TGG + chr5_4:63637970-63637989 None:intergenic 45.0%
!! AACCTTTGGAATCTCGACGT+CGG + chr5_4:63637997-63638016 None:intergenic 45.0%
ATGGTGATTGTGGCAGCATT+AGG + chr5_4:63638074-63638093 None:intergenic 45.0%
TGGACGGTAACGATCAAGAA+TGG + chr5_4:63638093-63638112 None:intergenic 45.0%
CAGTTTGGCAAAGACCTCTT+CGG + chr5_4:63638165-63638184 None:intergenic 45.0%
AGGAGGTTCTTGGTCAGTTA+CGG + chr5_4:63638198-63638217 None:intergenic 45.0%
!! TGTTTCCATTGTCGGCTTCT+TGG + chr5_4:63638238-63638257 None:intergenic 45.0%
TTGTGTGAGAGTCTTGACAC+AGG + chr5_4:63638270-63638289 None:intergenic 45.0%
! ATCAAGTCAGAGCATTCACG+AGG + chr5_4:63638320-63638339 None:intergenic 45.0%
GATCTTGCCCAAGCTTGATT+TGG - chr5_4:63638337-63638356 Msa0863650:CDS 45.0%
GACTCGTCCAAATCAAGCTT+GGG + chr5_4:63638347-63638366 None:intergenic 45.0%
AGACTCGTCCAAATCAAGCT+TGG + chr5_4:63638348-63638367 None:intergenic 45.0%
CCGACCTTAAAATCCGAGAA+TGG - chr5_4:63638384-63638403 Msa0863650:CDS 45.0%
TAAGCTACTGAGTTTCGCGT+AGG + chr5_4:63638423-63638442 None:intergenic 45.0%
TCAGTAGCTTACATACTGGC+TGG - chr5_4:63638432-63638451 Msa0863650:intron 45.0%
TCTGCCGGAACGATATTTGT+CGG - chr5_4:63638515-63638534 Msa0863650:intron 45.0%
TGCTTCATCCGTAGTGAAGT+TGG + chr5_4:63638555-63638574 None:intergenic 45.0%
AACTTCACTACGGATGAAGC+AGG - chr5_4:63638554-63638573 Msa0863650:intron 45.0%
ACGGATGAAGCAGGTGAATA+AGG - chr5_4:63638563-63638582 Msa0863650:intron 45.0%
GATGAAGCAGGTGAATAAGG+AGG - chr5_4:63638566-63638585 Msa0863650:intron 45.0%
GTGTATTATCCGACAGCTAG+TGG - chr5_4:63638656-63638675 Msa0863650:intron 45.0%
ATTATCCGACAGCTAGTGGT+TGG - chr5_4:63638660-63638679 Msa0863650:intron 45.0%
! TAGTGGTTGGCGAGATTTTG+TGG - chr5_4:63638673-63638692 Msa0863650:intron 45.0%
GTTGACGATGCCATGAAGAT+TGG - chr5_4:63638710-63638729 Msa0863650:intron 45.0%
ACGATGCCATGAAGATTGGT+TGG - chr5_4:63638714-63638733 Msa0863650:intron 45.0%
! GGGATATGGTTTGGATTCTG+TGG + chr5_4:63639522-63639541 None:intergenic 45.0%
GGATTCTGTGGGATATGGTT+TGG + chr5_4:63639531-63639550 None:intergenic 45.0%
GGTTTGGATTCTGTGGGATA+TGG + chr5_4:63639515-63639534 None:intergenic 45.0%
!! GTCTAGGACTTTTTGTTGGG+GGG + chr5_4:63639651-63639670 None:intergenic 45.0%
GGAATGAAGGAGGAAGTTGA+CGG + chr5_4:63639748-63639767 None:intergenic 45.0%
TTCCTCCTTCATTCCTATGC+AGG - chr5_4:63639753-63639772 Msa0863650:CDS 45.0%
TCCTCCTTCATTCCTATGCA+GGG - chr5_4:63639754-63639773 Msa0863650:CDS 45.0%
!! GATAAGCATGACGGATTCAC+TGG - chr5_4:63639832-63639851 Msa0863650:CDS 45.0%
ACTGGGAATAGTTCAATGGC+AGG - chr5_4:63639850-63639869 Msa0863650:CDS 45.0%
CTGGGAATAGTTCAATGGCA+GGG - chr5_4:63639851-63639870 Msa0863650:CDS 45.0%
!! CCAAGGTTTAGCTCTATGTC+AGG + chr5_4:63639892-63639911 None:intergenic 45.0%
CCTGACATAGAGCTAAACCT+TGG - chr5_4:63639889-63639908 Msa0863650:CDS 45.0%
!!! ATTTTGGGGTCCACAGAAGG+TGG + chr5_4:63637954-63637973 None:intergenic 50.0%
!! ACCTTTGGAATCTCGACGTC+GGG + chr5_4:63637996-63638015 None:intergenic 50.0%
CGATGCATGGAATGGATGGA+CGG + chr5_4:63638109-63638128 None:intergenic 50.0%
GAGACGATGCATGGAATGGA+TGG + chr5_4:63638113-63638132 None:intergenic 50.0%
TGTTGATCCTCACACCGAAG+AGG - chr5_4:63638148-63638167 Msa0863650:CDS 50.0%
TACGGGAGTTAGGAGCAGTT+TGG + chr5_4:63638180-63638199 None:intergenic 50.0%
CTTGGTCAGTTACGGGAGTT+AGG + chr5_4:63638190-63638209 None:intergenic 50.0%
GGAGGTTCTTGGTCAGTTAC+GGG + chr5_4:63638197-63638216 None:intergenic 50.0%
!!! GGTTTTAGATGCAGCGGAAC+TGG - chr5_4:63638607-63638626 Msa0863650:intron 50.0%
TTTAGATGCAGCGGAACTGG+CGG - chr5_4:63638610-63638629 Msa0863650:intron 50.0%
! TGGTTGGCGAGATTTTGTGG+TGG - chr5_4:63638676-63638695 Msa0863650:intron 50.0%
ACCTAATTGGCGCATGCTTG+AGG - chr5_4:63638853-63638872 Msa0863650:intron 50.0%
ACCTCAAGCATGCGCCAATT+AGG + chr5_4:63638857-63638876 None:intergenic 50.0%
!! TATTGGGGGGAAGTTGATGG+TGG + chr5_4:63639616-63639635 None:intergenic 50.0%
GACGGTGGAGGCTGTAATTT+AGG + chr5_4:63639730-63639749 None:intergenic 50.0%
ATGAAGGAGGAAGTTGACGG+TGG + chr5_4:63639745-63639764 None:intergenic 50.0%
TCCCTGCATAGGAATGAAGG+AGG + chr5_4:63639758-63639777 None:intergenic 50.0%
GACTCCCTGCATAGGAATGA+AGG + chr5_4:63639761-63639780 None:intergenic 50.0%
TCATTCCTATGCAGGGAGTC+AGG - chr5_4:63639761-63639780 Msa0863650:CDS 50.0%
AGTTCAATGGCAGGGTTGAG+TGG - chr5_4:63639859-63639878 Msa0863650:CDS 50.0%
CTAAACCTTGGCAGTCCTAG+AGG - chr5_4:63639901-63639920 Msa0863650:CDS 50.0%
!! TCACTTGGTGCTTGGCTCAT+TGG + chr5_4:63639959-63639978 None:intergenic 50.0%
!!! ATTTTGGGGTCCACAGAAGG+TGG + chr5_4:63637954-63637973 None:intergenic 50.0%
!! ACCTTTGGAATCTCGACGTC+GGG + chr5_4:63637996-63638015 None:intergenic 50.0%
CGATGCATGGAATGGATGGA+CGG + chr5_4:63638109-63638128 None:intergenic 50.0%
GAGACGATGCATGGAATGGA+TGG + chr5_4:63638113-63638132 None:intergenic 50.0%
TGTTGATCCTCACACCGAAG+AGG - chr5_4:63638148-63638167 Msa0863650:CDS 50.0%
TACGGGAGTTAGGAGCAGTT+TGG + chr5_4:63638180-63638199 None:intergenic 50.0%
CTTGGTCAGTTACGGGAGTT+AGG + chr5_4:63638190-63638209 None:intergenic 50.0%
GGAGGTTCTTGGTCAGTTAC+GGG + chr5_4:63638197-63638216 None:intergenic 50.0%
!!! GGTTTTAGATGCAGCGGAAC+TGG - chr5_4:63638607-63638626 Msa0863650:intron 50.0%
TTTAGATGCAGCGGAACTGG+CGG - chr5_4:63638610-63638629 Msa0863650:intron 50.0%
! TGGTTGGCGAGATTTTGTGG+TGG - chr5_4:63638676-63638695 Msa0863650:intron 50.0%
ACCTAATTGGCGCATGCTTG+AGG - chr5_4:63638853-63638872 Msa0863650:intron 50.0%
ACCTCAAGCATGCGCCAATT+AGG + chr5_4:63638857-63638876 None:intergenic 50.0%
!! TATTGGGGGGAAGTTGATGG+TGG + chr5_4:63639616-63639635 None:intergenic 50.0%
GACGGTGGAGGCTGTAATTT+AGG + chr5_4:63639730-63639749 None:intergenic 50.0%
ATGAAGGAGGAAGTTGACGG+TGG + chr5_4:63639745-63639764 None:intergenic 50.0%
TCCCTGCATAGGAATGAAGG+AGG + chr5_4:63639758-63639777 None:intergenic 50.0%
GACTCCCTGCATAGGAATGA+AGG + chr5_4:63639761-63639780 None:intergenic 50.0%
TCATTCCTATGCAGGGAGTC+AGG - chr5_4:63639761-63639780 Msa0863650:CDS 50.0%
AGTTCAATGGCAGGGTTGAG+TGG - chr5_4:63639859-63639878 Msa0863650:CDS 50.0%
CTAAACCTTGGCAGTCCTAG+AGG - chr5_4:63639901-63639920 Msa0863650:CDS 50.0%
!! TCACTTGGTGCTTGGCTCAT+TGG + chr5_4:63639959-63639978 None:intergenic 50.0%
TCTTCCTCAGCCACCTTCTG+TGG - chr5_4:63637941-63637960 Msa0863650:CDS 55.0%
!! CCTTTGGAATCTCGACGTCG+GGG + chr5_4:63637995-63638014 None:intergenic 55.0%
GGCAGAGACGATGCATGGAA+TGG + chr5_4:63638117-63638136 None:intergenic 55.0%
TCAACGGCAGAGACGATGCA+TGG + chr5_4:63638122-63638141 None:intergenic 55.0%
! GCAAAGACCTCTTCGGTGTG+AGG + chr5_4:63638158-63638177 None:intergenic 55.0%
!! TCCATTGTCGGCTTCTTGGC+CGG + chr5_4:63638234-63638253 None:intergenic 55.0%
TCTCGCCAACCACTAGCTGT+CGG + chr5_4:63638668-63638687 None:intergenic 55.0%
!! AGGCTAGCTTTGTGCCCTGT+AGG - chr5_4:63639042-63639061 Msa0863650:CDS 55.0%
! ATGGTGGAGGAGGAAGTCGA+AGG + chr5_4:63639600-63639619 None:intergenic 55.0%
AAGGAGGAAGTTGACGGTGG+AGG + chr5_4:63639742-63639761 None:intergenic 55.0%
TCATGCCTGACTCCCTGCAT+AGG + chr5_4:63639769-63639788 None:intergenic 55.0%
TCTTCCTCAGCCACCTTCTG+TGG - chr5_4:63637941-63637960 Msa0863650:CDS 55.0%
!! CCTTTGGAATCTCGACGTCG+GGG + chr5_4:63637995-63638014 None:intergenic 55.0%
GGCAGAGACGATGCATGGAA+TGG + chr5_4:63638117-63638136 None:intergenic 55.0%
TCAACGGCAGAGACGATGCA+TGG + chr5_4:63638122-63638141 None:intergenic 55.0%
! GCAAAGACCTCTTCGGTGTG+AGG + chr5_4:63638158-63638177 None:intergenic 55.0%
!! TCCATTGTCGGCTTCTTGGC+CGG + chr5_4:63638234-63638253 None:intergenic 55.0%
TCTCGCCAACCACTAGCTGT+CGG + chr5_4:63638668-63638687 None:intergenic 55.0%
!! AGGCTAGCTTTGTGCCCTGT+AGG - chr5_4:63639042-63639061 Msa0863650:CDS 55.0%
! ATGGTGGAGGAGGAAGTCGA+AGG + chr5_4:63639600-63639619 None:intergenic 55.0%
AAGGAGGAAGTTGACGGTGG+AGG + chr5_4:63639742-63639761 None:intergenic 55.0%
TCATGCCTGACTCCCTGCAT+AGG + chr5_4:63639769-63639788 None:intergenic 55.0%
CCCCGACGTCGAGATTCCAA+AGG - chr5_4:63637992-63638011 Msa0863650:CDS 60.0%
CCACAGGAGGAGGAGGTTCT+TGG + chr5_4:63638208-63638227 None:intergenic 60.0%
CCAAGAACCTCCTCCTCCTG+TGG - chr5_4:63638205-63638224 Msa0863650:intron 60.0%
!! CCATTGTCGGCTTCTTGGCC+GGG + chr5_4:63638233-63638252 None:intergenic 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG + chr5_4:63639594-63639613 None:intergenic 60.0%
!! GGGGAAGTTGATGGTGGAGG+AGG + chr5_4:63639610-63639629 None:intergenic 60.0%
!! TGGGGGGAAGTTGATGGTGG+AGG + chr5_4:63639613-63639632 None:intergenic 60.0%
!! CAGCACCTCTAGGACTGCCA+AGG + chr5_4:63639909-63639928 None:intergenic 60.0%
GGCAACGAGTCAGCACCTCT+AGG + chr5_4:63639919-63639938 None:intergenic 60.0%
CCCCGACGTCGAGATTCCAA+AGG - chr5_4:63637992-63638011 Msa0863650:CDS 60.0%
CCACAGGAGGAGGAGGTTCT+TGG + chr5_4:63638208-63638227 None:intergenic 60.0%
CCAAGAACCTCCTCCTCCTG+TGG - chr5_4:63638205-63638224 Msa0863650:intron 60.0%
!! CCATTGTCGGCTTCTTGGCC+GGG + chr5_4:63638233-63638252 None:intergenic 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG + chr5_4:63639594-63639613 None:intergenic 60.0%
!! GGGGAAGTTGATGGTGGAGG+AGG + chr5_4:63639610-63639629 None:intergenic 60.0%
!! TGGGGGGAAGTTGATGGTGG+AGG + chr5_4:63639613-63639632 None:intergenic 60.0%
!! CAGCACCTCTAGGACTGCCA+AGG + chr5_4:63639909-63639928 None:intergenic 60.0%
GGCAACGAGTCAGCACCTCT+AGG + chr5_4:63639919-63639938 None:intergenic 60.0%
GGGTCCACAGAAGGTGGCTG+AGG + chr5_4:63637948-63637967 None:intergenic 65.0%
TGGAATCTCGACGTCGGGGC+CGG + chr5_4:63637991-63638010 None:intergenic 65.0%
CCTCCTCCTCCTGTGGTTCC+CGG - chr5_4:63638212-63638231 Msa0863650:intron 65.0%
TCTTGGCCGGGAACCACAGG+AGG + chr5_4:63638221-63638240 None:intergenic 65.0%
GCTTCTTGGCCGGGAACCAC+AGG + chr5_4:63638224-63638243 None:intergenic 65.0%
CCCGGCCAAGAAGCCGACAA+TGG - chr5_4:63638230-63638249 Msa0863650:intron 65.0%
GGGTCCACAGAAGGTGGCTG+AGG + chr5_4:63637948-63637967 None:intergenic 65.0%
TGGAATCTCGACGTCGGGGC+CGG + chr5_4:63637991-63638010 None:intergenic 65.0%
CCTCCTCCTCCTGTGGTTCC+CGG - chr5_4:63638212-63638231 Msa0863650:intron 65.0%
TCTTGGCCGGGAACCACAGG+AGG + chr5_4:63638221-63638240 None:intergenic 65.0%
GCTTCTTGGCCGGGAACCAC+AGG + chr5_4:63638224-63638243 None:intergenic 65.0%
CCCGGCCAAGAAGCCGACAA+TGG - chr5_4:63638230-63638249 Msa0863650:intron 65.0%
CCGGGAACCACAGGAGGAGG+AGG + chr5_4:63638215-63638234 None:intergenic 70.0%
TGGCCGGGAACCACAGGAGG+AGG + chr5_4:63638218-63638237 None:intergenic 70.0%
CCGGGAACCACAGGAGGAGG+AGG + chr5_4:63638215-63638234 None:intergenic 70.0%
TGGCCGGGAACCACAGGAGG+AGG + chr5_4:63638218-63638237 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 63637936 63639978 63637936 ID=Msa0863650;Name=Msa0863650
chr5_4 mRNA 63637936 63639978 63637936 ID=Msa0863650-mRNA-1;Parent=Msa0863650;Name=Msa0863650-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|4|0|388
chr5_4 exon 63639339 63639978 63639339 ID=Msa0863650-mRNA-1:exon:20012;Parent=Msa0863650-mRNA-1
chr5_4 exon 63639040 63639242 63639040 ID=Msa0863650-mRNA-1:exon:20011;Parent=Msa0863650-mRNA-1
chr5_4 exon 63638336 63638419 63638336 ID=Msa0863650-mRNA-1:exon:20010;Parent=Msa0863650-mRNA-1
chr5_4 exon 63637936 63638175 63637936 ID=Msa0863650-mRNA-1:exon:20009;Parent=Msa0863650-mRNA-1
chr5_4 CDS 63639339 63639978 63639339 ID=Msa0863650-mRNA-1:cds;Parent=Msa0863650-mRNA-1
chr5_4 CDS 63639040 63639242 63639040 ID=Msa0863650-mRNA-1:cds;Parent=Msa0863650-mRNA-1
chr5_4 CDS 63638336 63638419 63638336 ID=Msa0863650-mRNA-1:cds;Parent=Msa0863650-mRNA-1
chr5_4 CDS 63637936 63638175 63637936 ID=Msa0863650-mRNA-1:cds;Parent=Msa0863650-mRNA-1
Gene Sequence

>Msa0863650

ATGTCTCTTCCTCAGCCACCTTCTGTGGACCCCAAAATATGGCAGAAATGCGCCGGCCCCGACGTCGAGATTCCAAAGGTTCACTCTAAAGTTTACTACTTCCCACAAGGTAATTTGGAACATGCATGTTCTTCGCCTAATGCTGCCACAATCACCATTCTTGATCGTTACCGTCCATCCATTCCATGCATCGTCTCTGCCGTTGATCTCTTTGTTGATCCTCACACCGAAGAGGTCTTTGCCAAACTGCTCCTAACTCCCGTAACTGACCAAGAACCTCCTCCTCCTGTGGTTCCCGGCCAAGAAGCCGACAATGGAAACAATCTTGTTTCCTGTGTCAAGACTCTCACACAATCTGATTGTACAAGAGTATTATGTGTACCTCGTGAATGCTCTGACTTGATCTTGCCCAAGCTTGATTTGGACGAGTCTCAGAGCATCACAGTCACCGACCTTAAAATCCGAGAATGGAGGTACACTTATACCTACGCGAAACTCAGTAGCTTACATACTGGCTGGTCTTACTTTGTACGAGAGAAGAAACTCGTCGCCAACGATTCTGTTGTTTTCATTAAAAACTCTGCCGGAACGATATTTGTCGGAATTCACAGGAATACCAACTTCACTACGGATGAAGCAGCTAGTGGTTGGCGAGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGAGTGAAGCTTCCTTTGAAGAAAGATGAATCTTCAAATTCAAAGATGACATATTCTCAGCCTAAAGGGACAATCTCTTTTGTCTTTAATGATTCTTCTAATGTACCTAATTGGCGCATGCTTGAGGTTAACTGGGATGGACCTAATATCCCACAGAATCCAAACCATATCCCACAGAATCCAAACCTAGTCAATACTTGGCAGATTGAACCTCCACCGTCAACTTCCTCCTTCATTCCTATGCAGGGAGTCAGGCATGAGCATGACCATTTATCTGTATCAGATTCATCAAAAGTTTTGAATGATAAGCATGACGGATTCACTGGGAATAGTTCAATGGCAGGGTTGAGTGGTACTTTGCCTGACATAGAGCTAAACCTTGGCAGTCCTAGAGGTGCTGACTCGTTGCCTCATAACCATAATAGGTCCAATGAGCCAAGCACCAAGTGA
Protein sequence

>Msa0863650

MSLPQPPSVDPKIWQKCAGPDVEIPKVHSKVYYFPQGNLEHACSSPNAATITILDRYRPSIPCIVSAVDLFVDPHTEEVFAKLLLTPVTDQEPPPPVVPGQEADNGNNLVSCVKTLTQSDCTRVLCVPRECSDLILPKLDLDESQSITVTDLKIREWRYTYTYAKLSSLHTGWSYFVREKKLVANDSVVFIKNSAGTIFVGIHRNTNFTTDEAASGWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKDESSNSKMTYSQPKGTISFVFNDSSNVPNWRMLEVNWDGPNIPQNPNHIPQNPNLVNTWQIEPPPSTSSFIPMQGVRHEHDHLSVSDSSKVLNDKHDGFTGNSSMAGLSGTLPDIELNLGSPRGADSLPHNHNRSNEPSTK*