Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863960 | XP_039690127.1 | 80.903 | 288 | 38 | 2 | 1 | 288 | 1 | 271 | 3.00e-164 | 467 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863960 | G7K4J6 | 80.903 | 288 | 38 | 2 | 1 | 288 | 1 | 271 | 1.43e-164 | 467 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0863960 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863960 | MtrunA17_Chr5g0435401 | 61.847 | 249 | 85 | 2 | 34 | 280 | 44 | 284 | 3.70e-97 | 291 |
| Msa0863960 | MtrunA17_Chr5g0435401 | 61.538 | 104 | 35 | 2 | 186 | 288 | 264 | 363 | 5.89e-30 | 117 |
| Msa0863960 | MtrunA17_Chr5g0445971 | 79.096 | 177 | 25 | 2 | 1 | 177 | 1 | 165 | 7.82e-96 | 279 |
| Msa0863960 | MtrunA17_Chr1g0192841 | 59.483 | 116 | 38 | 2 | 175 | 281 | 44 | 159 | 9.45e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAACTGCTTTGTTTATA+TGG | 0.157345 | 5_4:-64106702 | Msa0863960:three_prime_UTR |
| ATTCCTTCTTGAGGAATATT+TGG | 0.163911 | 5_4:+64107256 | None:intergenic |
| AGTAAAACAGGTACAAGTTT+AGG | 0.215844 | 5_4:+64108762 | None:intergenic |
| CTTTCTAAGGTCCAGTTAAA+AGG | 0.247346 | 5_4:-64108067 | Msa0863960:intron |
| ACATAAGAGTGACACGTATT+TGG | 0.322703 | 5_4:-64109300 | Msa0863960:five_prime_UTR |
| TTGAGTTGTCTTGTTGTTAG+AGG | 0.323549 | 5_4:+64109212 | None:intergenic |
| AATTTGACTAGAGTAGTTCT+TGG | 0.346592 | 5_4:+64107974 | None:intergenic |
| TATGAAAGTCCATACAAATA+AGG | 0.353156 | 5_4:-64109255 | Msa0863960:five_prime_UTR |
| GTAAAACAGGTACAAGTTTA+GGG | 0.365515 | 5_4:+64108763 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5_4:-64108308 | Msa0863960:CDS |
| TTCTTGCTTTCCTCTACATA+TGG | 0.365771 | 5_4:+64107022 | None:intergenic |
| AACTACTCTAGTCAAATTAC+AGG | 0.369281 | 5_4:-64107969 | Msa0863960:intron |
| TGGTAACCACTTTGGTTCCT+TGG | 0.370453 | 5_4:+64107276 | None:intergenic |
| GATGTCGGACATTGATAAAA+AGG | 0.374210 | 5_4:-64107163 | Msa0863960:intron |
| AGGTTGGCCATGAAAAGAAA+TGG | 0.384383 | 5_4:-64108336 | Msa0863960:CDS |
| TTGAATGAGTTTGATATAGA+AGG | 0.393011 | 5_4:+64109087 | None:intergenic |
| CAACAATGCAGCAGTGGACT+TGG | 0.400057 | 5_4:-64106855 | Msa0863960:three_prime_UTR |
| TTGAGAAATTGTACTTCTAC+AGG | 0.406380 | 5_4:-64108222 | Msa0863960:CDS |
| AGAGGAAAGCAAGAAAATAA+TGG | 0.419787 | 5_4:-64107014 | Msa0863960:CDS |
| TAGAAGGTCTCCAAGTCATT+AGG | 0.425705 | 5_4:+64109103 | None:intergenic |
| CTCAATGGAAGACAAGGAAA+TGG | 0.427979 | 5_4:-64109194 | Msa0863960:exon |
| TTGTGACCTCCAAGTAAAAC+AGG | 0.431064 | 5_4:+64108750 | None:intergenic |
| TCAATGGAAGACAAGGAAAT+GGG | 0.431805 | 5_4:-64109193 | Msa0863960:CDS |
| ACATTGGTGAGTTGTGTGTT+TGG | 0.432104 | 5_4:+64109157 | None:intergenic |
| GGAATATTTGGTAACCACTT+TGG | 0.442677 | 5_4:+64107268 | None:intergenic |
| CTCACCAATGTTGTCGTGTC+CGG | 0.446758 | 5_4:-64109145 | Msa0863960:CDS |
| GTGTAGCTGTCAAATATTCA+TGG | 0.446860 | 5_4:-64109278 | Msa0863960:five_prime_UTR |
| AGTGCACTCAAGATCTTAAG+AGG | 0.447998 | 5_4:-64106952 | Msa0863960:CDS |
| GGTTGGCCATGAAAAGAAAT+GGG | 0.467471 | 5_4:-64108335 | Msa0863960:CDS |
| TTGGATATCTTTGCCGCCAT+CGG | 0.472444 | 5_4:+64107993 | None:intergenic |
| CCTGCAACCGCCAATGCAAA+AGG | 0.477405 | 5_4:-64108196 | Msa0863960:intron |
| TCGACTGAAAGCTGATCATC+AGG | 0.477735 | 5_4:-64107229 | Msa0863960:CDS |
| ATAAACAAAGCAGTTTAGCT+TGG | 0.493707 | 5_4:+64106706 | None:intergenic |
| GTACGGTAGATTTGCTAACC+TGG | 0.501073 | 5_4:-64106805 | Msa0863960:three_prime_UTR |
| AACAAATGGCTATTGATACT+TGG | 0.501313 | 5_4:-64107191 | Msa0863960:CDS |
| CATACGCGTCCGAAAACAAA+TGG | 0.508342 | 5_4:-64107205 | Msa0863960:CDS |
| GTCGAGCACATTCCTTCTTG+AGG | 0.518278 | 5_4:+64107247 | None:intergenic |
| TTGTCTTGTTGTTAGAGGAA+TGG | 0.525758 | 5_4:+64109217 | None:intergenic |
| TGAATGACTGTACTAGTTGT+TGG | 0.526633 | 5_4:-64106777 | Msa0863960:three_prime_UTR |
| TACTTGGAGGTCACAAGAAG+AGG | 0.530713 | 5_4:-64108743 | Msa0863960:CDS |
| GTATTCTTCTCCTAATGACT+TGG | 0.531995 | 5_4:-64109113 | Msa0863960:CDS |
| GTACAGTCATTCATATTCCC+AGG | 0.539258 | 5_4:+64106787 | None:intergenic |
| GAATGACTGTACTAGTTGTT+GGG | 0.543555 | 5_4:-64106776 | Msa0863960:three_prime_UTR |
| AATGTTGAATGTTTATCGTA+CGG | 0.547849 | 5_4:-64106822 | Msa0863960:three_prime_UTR |
| AAGGTCCAGTTAAAAGGAAG+CGG | 0.550807 | 5_4:-64108061 | Msa0863960:CDS |
| CTAACAACAAGACAACTCAA+TGG | 0.551952 | 5_4:-64109209 | Msa0863960:exon |
| CCAATGTTGTCGTGTCCGGC+GGG | 0.557640 | 5_4:-64109141 | Msa0863960:CDS |
| ACCAATGTTGTCGTGTCCGG+CGG | 0.561143 | 5_4:-64109142 | Msa0863960:CDS |
| AGGTCCAGTTAAAAGGAAGC+GGG | 0.572045 | 5_4:-64108060 | Msa0863960:CDS |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5_4:-64108304 | Msa0863960:CDS |
| CCCTAGTTTATCTCAATCAA+CGG | 0.576803 | 5_4:-64108030 | Msa0863960:CDS |
| TTACCAAATATTCCTCAAGA+AGG | 0.579179 | 5_4:-64107259 | Msa0863960:CDS |
| CCCGCCGGACACGACAACAT+TGG | 0.584078 | 5_4:+64109141 | None:intergenic |
| CCGTTGATTGAGATAAACTA+GGG | 0.589080 | 5_4:+64108030 | None:intergenic |
| TCCGTTGATTGAGATAAACT+AGG | 0.590229 | 5_4:+64108029 | None:intergenic |
| AGACAACTCAATGGAAGACA+AGG | 0.602364 | 5_4:-64109200 | Msa0863960:exon |
| TTGGAGGTCACAAGAAGAGG+AGG | 0.603112 | 5_4:-64108740 | Msa0863960:CDS |
| TACGGTAGATTTGCTAACCT+GGG | 0.603269 | 5_4:-64106804 | Msa0863960:three_prime_UTR |
| AGAAACAGAGAGGTGCTCCA+AGG | 0.610360 | 5_4:-64107293 | Msa0863960:CDS |
| TTTCATGTAGCCATATGTAG+AGG | 0.614803 | 5_4:-64107032 | Msa0863960:intron |
| TGATACTTGGAAGAAGATGT+CGG | 0.619673 | 5_4:-64107178 | Msa0863960:CDS |
| GGACGATGAAGATTATCCGA+TGG | 0.637194 | 5_4:-64108009 | Msa0863960:CDS |
| GTGCACTCAAGATCTTAAGA+GGG | 0.655456 | 5_4:-64106951 | Msa0863960:CDS |
| CAATGGAAGACAAGGAAATG+GGG | 0.658720 | 5_4:-64109192 | Msa0863960:CDS |
| CGATGAAGATTATCCGATGG+CGG | 0.681671 | 5_4:-64108006 | Msa0863960:CDS |
| AGAAGAATACTGTTTCCCGC+CGG | 0.682409 | 5_4:+64109126 | None:intergenic |
| GAAAAGAAGCATAATGTGTG+TGG | 0.683498 | 5_4:-64106926 | Msa0863960:CDS |
| AAAGAAAAGAAGAAACAGAG+AGG | 0.700139 | 5_4:-64107303 | Msa0863960:CDS |
| CAAGGAAATGGGGAAGACGA+CGG | 0.702245 | 5_4:-64109182 | Msa0863960:CDS |
| GGTGCTCCAAGGAACCAAAG+TGG | 0.716106 | 5_4:-64107282 | Msa0863960:CDS |
| GTTGGCCATGAAAAGAAATG+GGG | 0.719191 | 5_4:-64108334 | Msa0863960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATTACATATAATTATT+TGG | - | chr5_4:64107099-64107118 | Msa0863960:intron | 10.0% |
| !! | GTTATTACATATAATTATTT+GGG | - | chr5_4:64107100-64107119 | Msa0863960:intron | 10.0% |
| !! | TTATAAAAAAAAAATTTCCT+CGG | - | chr5_4:64107548-64107567 | Msa0863960:intron | 10.0% |
| !!! | GAGGAAATTTTTTTTTTATA+AGG | + | chr5_4:64107549-64107568 | None:intergenic | 15.0% |
| !! | ATTAAAAGTTGAAAGATTTA+TGG | - | chr5_4:64108848-64108867 | Msa0863960:intron | 15.0% |
| !!! | TTCAATTTACAACGTTTTTA+TGG | - | chr5_4:64107576-64107595 | Msa0863960:intron | 20.0% |
| !! | ATTATTTGGATGAGTTTAAA+GGG | - | chr5_4:64108289-64108308 | Msa0863960:CDS | 20.0% |
| !! | ATTTCAAATAAACCAACTAT+AGG | + | chr5_4:64108886-64108905 | None:intergenic | 20.0% |
| ! | TATGAAAGTCCATACAAATA+AGG | - | chr5_4:64106701-64106720 | Msa0863960:three_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTGATATAGA+AGG | + | chr5_4:64106872-64106891 | None:intergenic | 25.0% |
| ! | TTGAAACTGCAAAATAGAAT+TGG | + | chr5_4:64107160-64107179 | None:intergenic | 25.0% |
| ! | TCTTGACTAATTTAGATTAC+AGG | + | chr5_4:64107498-64107517 | None:intergenic | 25.0% |
| ! | TGTAATCTAAATTAGTCAAG+AGG | - | chr5_4:64107497-64107516 | Msa0863960:intron | 25.0% |
| ! | GTAATCTAAATTAGTCAAGA+GGG | - | chr5_4:64107498-64107517 | Msa0863960:intron | 25.0% |
| ! | TAATCTAAATTAGTCAAGAG+GGG | - | chr5_4:64107499-64107518 | Msa0863960:intron | 25.0% |
| ! | TGCTTAAGATAACCATAAAT+TGG | + | chr5_4:64107799-64107818 | None:intergenic | 25.0% |
| ! | TAGTCAAATTACAGGTAATA+AGG | - | chr5_4:64107995-64108014 | Msa0863960:CDS | 25.0% |
| ! | CGAAAATTGAATTCATTGAT+TGG | - | chr5_4:64108037-64108056 | Msa0863960:CDS | 25.0% |
| ! | ATTTACTAAAGTTCCAAAAC+CGG | - | chr5_4:64108203-64108222 | Msa0863960:CDS | 25.0% |
| !! | TTGGTAACTCAATGATTATT+TGG | - | chr5_4:64108275-64108294 | Msa0863960:CDS | 25.0% |
| ! | GATTATTTGGATGAGTTTAA+AGG | - | chr5_4:64108288-64108307 | Msa0863960:CDS | 25.0% |
| !!! | TCAAAATCTACTTTGAAATC+TGG | + | chr5_4:64108394-64108413 | None:intergenic | 25.0% |
| ! | TAAAATACGAGCTTGAAATA+TGG | - | chr5_4:64108432-64108451 | Msa0863960:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTACTTGA+GGG | + | chr5_4:64108644-64108663 | None:intergenic | 25.0% |
| !!! | TATCAATAGCCATTTGTTTT+CGG | + | chr5_4:64108763-64108782 | None:intergenic | 25.0% |
| ! | AATGTTGAATGTTTATCGTA+CGG | - | chr5_4:64109134-64109153 | Msa0863960:CDS | 25.0% |
| !!! | AGTCTTTTTTTTGGTTTTTG+AGG | - | chr5_4:64109205-64109224 | Msa0863960:exon | 25.0% |
| !! | AATGTTTTCACATTTCACTA+GGG | - | chr5_4:64109292-64109311 | Msa0863960:five_prime_UTR | 25.0% |
| !! | GAGCATTTTCCTTATTTGTA+TGG | + | chr5_4:64106713-64106732 | None:intergenic | 30.0% |
| ATTTCGTGCATTCATATTCA+AGG | - | chr5_4:64106985-64107004 | Msa0863960:CDS | 30.0% | |
| ! | TACAAGTTTAGGGATGTTTT+CGG | + | chr5_4:64107186-64107205 | None:intergenic | 30.0% |
| GTAAAACAGGTACAAGTTTA+GGG | + | chr5_4:64107196-64107215 | None:intergenic | 30.0% | |
| AGTAAAACAGGTACAAGTTT+AGG | + | chr5_4:64107197-64107216 | None:intergenic | 30.0% | |
| ! | AAACTTGTACCTGTTTTACT+TGG | - | chr5_4:64107197-64107216 | Msa0863960:CDS | 30.0% |
| ! | TTTTCACCAGGTATATTGTT+TGG | - | chr5_4:64107239-64107258 | Msa0863960:CDS | 30.0% |
| ATGTAACCAAACAATATACC+TGG | + | chr5_4:64107248-64107267 | None:intergenic | 30.0% | |
| !!! | TAGAAGCTACATTTTGGTTA+TGG | + | chr5_4:64107442-64107461 | None:intergenic | 30.0% |
| ! | TGCAAATAGAAGCTACATTT+TGG | + | chr5_4:64107448-64107467 | None:intergenic | 30.0% |
| TTACAGGCACAACATATTTA+TGG | + | chr5_4:64107482-64107501 | None:intergenic | 30.0% | |
| !! | TTTTTCAACTTGAGCACATA+AGG | + | chr5_4:64107689-64107708 | None:intergenic | 30.0% |
| TTGAGAAATTGTACTTCTAC+AGG | - | chr5_4:64107734-64107753 | Msa0863960:intron | 30.0% | |
| ! | AAAAGGTTAACCTTTTGCAT+TGG | + | chr5_4:64107773-64107792 | None:intergenic | 30.0% |
| ! | ATGCAAAAGGTTAACCTTTT+AGG | - | chr5_4:64107773-64107792 | Msa0863960:intron | 30.0% |
| ! | TAACCTTTTAGGCCAATTTA+TGG | - | chr5_4:64107784-64107803 | Msa0863960:intron | 30.0% |
| ! | TAACCATAAATTGGCCTAAA+AGG | + | chr5_4:64107790-64107809 | None:intergenic | 30.0% |
| !!! | TGTTTCAGTTTGTTGCATTT+TGG | - | chr5_4:64107828-64107847 | Msa0863960:intron | 30.0% |
| ACCTTAAATACTCCTTTCTA+AGG | - | chr5_4:64107876-64107895 | Msa0863960:intron | 30.0% | |
| !! | ACCTTAGAAAGGAGTATTTA+AGG | + | chr5_4:64107880-64107899 | None:intergenic | 30.0% |
| AATTTGACTAGAGTAGTTCT+TGG | + | chr5_4:64107985-64108004 | None:intergenic | 30.0% | |
| AACTACTCTAGTCAAATTAC+AGG | - | chr5_4:64107987-64108006 | Msa0863960:CDS | 30.0% | |
| AACACAAAAAGTAGCAAAAC+CGG | + | chr5_4:64108225-64108244 | None:intergenic | 30.0% | |
| ATTGGATTCTTACTTAAAGC+AGG | - | chr5_4:64108581-64108600 | Msa0863960:intron | 30.0% | |
| !! | CTTCTTTTCTTTGTTACTTG+AGG | + | chr5_4:64108645-64108664 | None:intergenic | 30.0% |
| AAAGAAAAGAAGAAACAGAG+AGG | - | chr5_4:64108653-64108672 | Msa0863960:intron | 30.0% | |
| TTACCAAATATTCCTCAAGA+AGG | - | chr5_4:64108697-64108716 | Msa0863960:intron | 30.0% | |
| ATTCCTTCTTGAGGAATATT+TGG | + | chr5_4:64108703-64108722 | None:intergenic | 30.0% | |
| AACAAATGGCTATTGATACT+TGG | - | chr5_4:64108765-64108784 | Msa0863960:CDS | 30.0% | |
| !! | TTTTGCAATTAGCCTATAGT+TGG | - | chr5_4:64108871-64108890 | Msa0863960:intron | 30.0% |
| AGAGGAAAGCAAGAAAATAA+TGG | - | chr5_4:64108942-64108961 | Msa0863960:intron | 30.0% | |
| ATAAACAAAGCAGTTTAGCT+TGG | + | chr5_4:64109253-64109272 | None:intergenic | 30.0% | |
| !! | GCTAAACTGCTTTGTTTATA+TGG | - | chr5_4:64109254-64109273 | Msa0863960:five_prime_UTR | 30.0% |
| ! | CAATGTTTTCACATTTCACT+AGG | - | chr5_4:64109291-64109310 | Msa0863960:five_prime_UTR | 30.0% |
| ACATAAGAGTGACACGTATT+TGG | - | chr5_4:64106656-64106675 | Msa0863960:three_prime_UTR | 35.0% | |
| GTGTAGCTGTCAAATATTCA+TGG | - | chr5_4:64106678-64106697 | Msa0863960:three_prime_UTR | 35.0% | |
| !! | TTGTCTTGTTGTTAGAGGAA+TGG | + | chr5_4:64106742-64106761 | None:intergenic | 35.0% |
| !! | TTGAGTTGTCTTGTTGTTAG+AGG | + | chr5_4:64106747-64106766 | None:intergenic | 35.0% |
| CTAACAACAAGACAACTCAA+TGG | - | chr5_4:64106747-64106766 | Msa0863960:three_prime_UTR | 35.0% | |
| TCAATGGAAGACAAGGAAAT+GGG | - | chr5_4:64106763-64106782 | Msa0863960:three_prime_UTR | 35.0% | |
| GTATTCTTCTCCTAATGACT+TGG | - | chr5_4:64106843-64106862 | Msa0863960:three_prime_UTR | 35.0% | |
| ! | ATTCAACTTTTAGACTTCGC+TGG | - | chr5_4:64106886-64106905 | Msa0863960:three_prime_UTR | 35.0% |
| ! | TTTTAGACTTCGCTGGAAAA+CGG | - | chr5_4:64106893-64106912 | Msa0863960:three_prime_UTR | 35.0% |
| !! | TGTGTGTTTACTGGTTTGTT+TGG | - | chr5_4:64106951-64106970 | Msa0863960:CDS | 35.0% |
| GCAAAATAGAATTGGAACAG+AGG | + | chr5_4:64107152-64107171 | None:intergenic | 35.0% | |
| GGTTACATCATATGATGACA+TGG | - | chr5_4:64107260-64107279 | Msa0863960:CDS | 35.0% | |
| GCAATGTCGAAAACTATATG+TGG | + | chr5_4:64107413-64107432 | None:intergenic | 35.0% | |
| TTGTAAATTGAACATCTCCG+AGG | + | chr5_4:64107568-64107587 | None:intergenic | 35.0% | |
| TTCTCTTGAATGTTTCCTAC+AGG | - | chr5_4:64107600-64107619 | Msa0863960:intron | 35.0% | |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | - | chr5_4:64107648-64107667 | Msa0863960:intron | 35.0% |
| !! | GCTCAAGTTGAAAAACTCTA+TGG | - | chr5_4:64107694-64107713 | Msa0863960:intron | 35.0% |
| !! | CTTTTAACTGGACCTTAGAA+AGG | + | chr5_4:64107891-64107910 | None:intergenic | 35.0% |
| !! | CTTTCTAAGGTCCAGTTAAA+AGG | - | chr5_4:64107889-64107908 | Msa0863960:intron | 35.0% |
| ! | CCGTTGATTGAGATAAACTA+GGG | + | chr5_4:64107929-64107948 | None:intergenic | 35.0% |
| CCCTAGTTTATCTCAATCAA+CGG | - | chr5_4:64107926-64107945 | Msa0863960:intron | 35.0% | |
| ! | TCCGTTGATTGAGATAAACT+AGG | + | chr5_4:64107930-64107949 | None:intergenic | 35.0% |
| CACAACTGATCAATTCACTA+TGG | - | chr5_4:64108173-64108192 | Msa0863960:intron | 35.0% | |
| !! | AAAAGTAGCAAAACCGGTTT+TGG | + | chr5_4:64108219-64108238 | None:intergenic | 35.0% |
| ! | CTGTGGACATGAGTTTATTT+TGG | - | chr5_4:64108256-64108275 | Msa0863960:CDS | 35.0% |
| TGGATGAGTTTAAAGGGATT+TGG | - | chr5_4:64108295-64108314 | Msa0863960:CDS | 35.0% | |
| ACAACCCAAATTCAGTTTAG+AGG | - | chr5_4:64108520-64108539 | Msa0863960:intron | 35.0% | |
| GTGTTTATGCTGCAATACAT+TGG | - | chr5_4:64108563-64108582 | Msa0863960:intron | 35.0% | |
| TTCTTACTTAAAGCAGGAGA+TGG | - | chr5_4:64108587-64108606 | Msa0863960:intron | 35.0% | |
| ! | GGAATATTTGGTAACCACTT+TGG | + | chr5_4:64108691-64108710 | None:intergenic | 35.0% |
| TGATACTTGGAAGAAGATGT+CGG | - | chr5_4:64108778-64108797 | Msa0863960:CDS | 35.0% | |
| GATGTCGGACATTGATAAAA+AGG | - | chr5_4:64108793-64108812 | Msa0863960:intron | 35.0% | |
| TTTCATGTAGCCATATGTAG+AGG | - | chr5_4:64108924-64108943 | Msa0863960:intron | 35.0% | |
| TTCTTGCTTTCCTCTACATA+TGG | + | chr5_4:64108937-64108956 | None:intergenic | 35.0% | |
| ! | GAAAAGAAGCATAATGTGTG+TGG | - | chr5_4:64109030-64109049 | Msa0863960:intron | 35.0% |
| TGAATGACTGTACTAGTTGT+TGG | - | chr5_4:64109179-64109198 | Msa0863960:CDS | 35.0% | |
| GAATGACTGTACTAGTTGTT+GGG | - | chr5_4:64109180-64109199 | Msa0863960:CDS | 35.0% | |
| !!! | TGTTGGGCAAGTCTTTTTTT+TGG | - | chr5_4:64109196-64109215 | Msa0863960:exon | 35.0% |
| AGACAACTCAATGGAAGACA+AGG | - | chr5_4:64106756-64106775 | Msa0863960:three_prime_UTR | 40.0% | |
| CTCAATGGAAGACAAGGAAA+TGG | - | chr5_4:64106762-64106781 | Msa0863960:three_prime_UTR | 40.0% | |
| CAATGGAAGACAAGGAAATG+GGG | - | chr5_4:64106764-64106783 | Msa0863960:three_prime_UTR | 40.0% | |
| ACATTGGTGAGTTGTGTGTT+TGG | + | chr5_4:64106802-64106821 | None:intergenic | 40.0% | |
| TAGAAGGTCTCCAAGTCATT+AGG | + | chr5_4:64106856-64106875 | None:intergenic | 40.0% | |
| CCAGTAAACACACATGCAAA+CGG | + | chr5_4:64106945-64106964 | None:intergenic | 40.0% | |
| ! | CTTGTACCTGTTTTACTTGG+AGG | - | chr5_4:64107200-64107219 | Msa0863960:CDS | 40.0% |
| TTGTGACCTCCAAGTAAAAC+AGG | + | chr5_4:64107209-64107228 | None:intergenic | 40.0% | |
| CTTGAATGTTTCCTACAGGT+TGG | - | chr5_4:64107604-64107623 | Msa0863960:intron | 40.0% | |
| ! | AGGTTGGCCATGAAAAGAAA+TGG | - | chr5_4:64107620-64107639 | Msa0863960:intron | 40.0% |
| ! | GGTTGGCCATGAAAAGAAAT+GGG | - | chr5_4:64107621-64107640 | Msa0863960:intron | 40.0% |
| GTTGGCCATGAAAAGAAATG+GGG | - | chr5_4:64107622-64107641 | Msa0863960:intron | 40.0% | |
| ! | CTTCACCCCATTTCTTTTCA+TGG | + | chr5_4:64107630-64107649 | None:intergenic | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | - | chr5_4:64107652-64107671 | Msa0863960:intron | 40.0% |
| ! | AGGTTAACCTTTTGCATTGG+CGG | + | chr5_4:64107770-64107789 | None:intergenic | 40.0% |
| AAGGTCCAGTTAAAAGGAAG+CGG | - | chr5_4:64107895-64107914 | Msa0863960:intron | 40.0% | |
| TGTGTTTATTAGCTGCACTG+TGG | - | chr5_4:64108239-64108258 | Msa0863960:CDS | 40.0% | |
| TACGAGCTTGAAATATGGAC+CGG | - | chr5_4:64108437-64108456 | Msa0863960:intron | 40.0% | |
| GCTGCCTCTAAACTGAATTT+GGG | + | chr5_4:64108527-64108546 | None:intergenic | 40.0% | |
| AGCTGCCTCTAAACTGAATT+TGG | + | chr5_4:64108528-64108547 | None:intergenic | 40.0% | |
| AGTGCACTCAAGATCTTAAG+AGG | - | chr5_4:64109004-64109023 | Msa0863960:intron | 40.0% | |
| GTGCACTCAAGATCTTAAGA+GGG | - | chr5_4:64109005-64109024 | Msa0863960:intron | 40.0% | |
| ! | TTTTGTCAACAATGCAGCAG+TGG | - | chr5_4:64109095-64109114 | Msa0863960:CDS | 40.0% |
| !! | TACGGTAGATTTGCTAACCT+GGG | - | chr5_4:64109152-64109171 | Msa0863960:CDS | 40.0% |
| GTACAGTCATTCATATTCCC+AGG | + | chr5_4:64109172-64109191 | None:intergenic | 40.0% | |
| AGAAGAATACTGTTTCCCGC+CGG | + | chr5_4:64106833-64106852 | None:intergenic | 45.0% | |
| CCGTTTGCATGTGTGTTTAC+TGG | - | chr5_4:64106942-64106961 | Msa0863960:CDS | 45.0% | |
| TACTTGGAGGTCACAAGAAG+AGG | - | chr5_4:64107213-64107232 | Msa0863960:CDS | 45.0% | |
| ! | AAGAAGAGGAGGTTTTCACC+AGG | - | chr5_4:64107227-64107246 | Msa0863960:CDS | 45.0% |
| AGCCTTCAACTTCAACCTAC+AGG | - | chr5_4:64107334-64107353 | Msa0863960:CDS | 45.0% | |
| GCCTTCAACTTCAACCTACA+GGG | - | chr5_4:64107335-64107354 | Msa0863960:CDS | 45.0% | |
| CCTTCAACTTCAACCTACAG+GGG | - | chr5_4:64107336-64107355 | Msa0863960:CDS | 45.0% | |
| TTGCTAGATTCAACCCCTGT+AGG | + | chr5_4:64107352-64107371 | None:intergenic | 45.0% | |
| GTGGACACACATTCGAACTT+TGG | + | chr5_4:64107394-64107413 | None:intergenic | 45.0% | |
| ! | TCTTTTCATGGCCAACCTGT+AGG | + | chr5_4:64107618-64107637 | None:intergenic | 45.0% |
| AGGTCCAGTTAAAAGGAAGC+GGG | - | chr5_4:64107896-64107915 | Msa0863960:intron | 45.0% | |
| GGACGATGAAGATTATCCGA+TGG | - | chr5_4:64107947-64107966 | Msa0863960:intron | 45.0% | |
| CGATGAAGATTATCCGATGG+CGG | - | chr5_4:64107950-64107969 | Msa0863960:intron | 45.0% | |
| TTGGATATCTTTGCCGCCAT+CGG | + | chr5_4:64107966-64107985 | None:intergenic | 45.0% | |
| GGTGGTTCAAACAAGATCTG+CGG | - | chr5_4:64108367-64108386 | Msa0863960:intron | 45.0% | |
| AGCACATCGTCGTTCAATCA+AGG | + | chr5_4:64108467-64108486 | None:intergenic | 45.0% | |
| ! | TGGTAACCACTTTGGTTCCT+TGG | + | chr5_4:64108683-64108702 | None:intergenic | 45.0% |
| TCGACTGAAAGCTGATCATC+AGG | - | chr5_4:64108727-64108746 | Msa0863960:intron | 45.0% | |
| CATACGCGTCCGAAAACAAA+TGG | - | chr5_4:64108751-64108770 | Msa0863960:CDS | 45.0% | |
| !! | GTACGGTAGATTTGCTAACC+TGG | - | chr5_4:64109151-64109170 | Msa0863960:CDS | 45.0% |
| CAAGGAAATGGGGAAGACGA+CGG | - | chr5_4:64106774-64106793 | Msa0863960:three_prime_UTR | 50.0% | |
| CTCACCAATGTTGTCGTGTC+CGG | - | chr5_4:64106811-64106830 | Msa0863960:three_prime_UTR | 50.0% | |
| TTGGAGGTCACAAGAAGAGG+AGG | - | chr5_4:64107216-64107235 | Msa0863960:CDS | 50.0% | |
| ! | CCCCTGTAGGTTGAAGTTGA+AGG | + | chr5_4:64107339-64107358 | None:intergenic | 50.0% |
| ! | GAGTCCCGCTTCCTTTTAAC+TGG | + | chr5_4:64107903-64107922 | None:intergenic | 50.0% |
| TCGCACGCTTTCAACCACAT+CGG | - | chr5_4:64108343-64108362 | Msa0863960:intron | 50.0% | |
| TGTTTGAACCACCACCGATG+TGG | + | chr5_4:64108360-64108379 | None:intergenic | 50.0% | |
| GTCGTTCAATCAAGGTCGTC+CGG | + | chr5_4:64108459-64108478 | None:intergenic | 50.0% | |
| !! | AGAAACAGAGAGGTGCTCCA+AGG | - | chr5_4:64108663-64108682 | Msa0863960:intron | 50.0% |
| GTCGAGCACATTCCTTCTTG+AGG | + | chr5_4:64108712-64108731 | None:intergenic | 50.0% | |
| ! | CAACAATGCAGCAGTGGACT+TGG | - | chr5_4:64109101-64109120 | Msa0863960:CDS | 50.0% |
| ACCAATGTTGTCGTGTCCGG+CGG | - | chr5_4:64106814-64106833 | Msa0863960:three_prime_UTR | 55.0% | |
| !! | CCTTTTGCATTGGCGGTTGC+AGG | + | chr5_4:64107763-64107782 | None:intergenic | 55.0% |
| CCTGCAACCGCCAATGCAAA+AGG | - | chr5_4:64107760-64107779 | Msa0863960:intron | 55.0% | |
| AGCGTGCGATCACAGGATTG+TGG | + | chr5_4:64108332-64108351 | None:intergenic | 55.0% | |
| ! | GGTTGAAAGCGTGCGATCAC+AGG | + | chr5_4:64108339-64108358 | None:intergenic | 55.0% |
| CACGCTTTCAACCACATCGG+TGG | - | chr5_4:64108346-64108365 | Msa0863960:intron | 55.0% | |
| GCTTTCAACCACATCGGTGG+TGG | - | chr5_4:64108349-64108368 | Msa0863960:intron | 55.0% | |
| GGTGCTCCAAGGAACCAAAG+TGG | - | chr5_4:64108674-64108693 | Msa0863960:intron | 55.0% | |
| CCAATGTTGTCGTGTCCGGC+GGG | - | chr5_4:64106815-64106834 | Msa0863960:three_prime_UTR | 60.0% | |
| CCCGCCGGACACGACAACAT+TGG | + | chr5_4:64106818-64106837 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 64106637 | 64109341 | 64106637 | ID=Msa0863960;Name=Msa0863960 |
| chr5_4 | mRNA | 64106637 | 64109341 | 64106637 | ID=Msa0863960-mRNA-1;Parent=Msa0863960;Name=Msa0863960-mRNA-1;_AED=0.04;_eAED=0.04;_QI=129|0.5|0.71|0.85|0.5|0.71|7|279|288 |
| chr5_4 | exon | 64106637 | 64107044 | 64106637 | ID=Msa0863960-mRNA-1:exon:20198;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64107164 | 64107375 | 64107164 | ID=Msa0863960-mRNA-1:exon:20197;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64107970 | 64108080 | 64107970 | ID=Msa0863960-mRNA-1:exon:20196;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64108197 | 64108356 | 64108197 | ID=Msa0863960-mRNA-1:exon:20195;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64108730 | 64108804 | 64108730 | ID=Msa0863960-mRNA-1:exon:20194;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64108927 | 64108957 | 64108927 | ID=Msa0863960-mRNA-1:exon:20193;Parent=Msa0863960-mRNA-1 |
| chr5_4 | exon | 64109064 | 64109341 | 64109064 | ID=Msa0863960-mRNA-1:exon:20192;Parent=Msa0863960-mRNA-1 |
| chr5_4 | five_prime_UTR | 64109213 | 64109341 | 64109213 | ID=Msa0863960-mRNA-1:five_prime_utr;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64109064 | 64109212 | 64109064 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64108927 | 64108957 | 64108927 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64108730 | 64108804 | 64108730 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64108197 | 64108356 | 64108197 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64107970 | 64108080 | 64107970 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64107164 | 64107375 | 64107164 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | CDS | 64106916 | 64107044 | 64106916 | ID=Msa0863960-mRNA-1:cds;Parent=Msa0863960-mRNA-1 |
| chr5_4 | three_prime_UTR | 64106637 | 64106915 | 64106637 | ID=Msa0863960-mRNA-1:three_prime_utr;Parent=Msa0863960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
