Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864330 | AET00786.2 | 82.051 | 195 | 19 | 5 | 1 | 191 | 1 | 183 | 1.66e-80 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864330 | sp|Q9SFD8|NFYB9_ARATH | 46.078 | 102 | 47 | 2 | 8 | 109 | 54 | 147 | 8.53e-21 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864330 | G7KEG5 | 82.051 | 195 | 19 | 5 | 1 | 191 | 1 | 183 | 7.91e-81 | 253 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0864330 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864330 | MtrunA17_Chr5g0446601 | 80.928 | 194 | 21 | 5 | 2 | 191 | 10 | 191 | 4.80e-83 | 249 |
| Msa0864330 | MtrunA17_Chr5g0446611 | 95.000 | 120 | 5 | 1 | 204 | 322 | 490 | 609 | 1.14e-72 | 240 |
| Msa0864330 | MtrunA17_Chr2g0282991 | 83.051 | 118 | 20 | 0 | 204 | 321 | 487 | 604 | 3.34e-59 | 205 |
| Msa0864330 | MtrunA17_Chr3g0084971 | 60.294 | 136 | 54 | 0 | 186 | 321 | 464 | 599 | 1.32e-43 | 160 |
| Msa0864330 | MtrunA17_Chr2g0282891 | 62.185 | 119 | 43 | 2 | 204 | 321 | 159 | 276 | 1.57e-36 | 134 |
| Msa0864330 | MtrunA17_Chr7g0255751 | 70.149 | 67 | 20 | 0 | 255 | 321 | 1 | 67 | 7.37e-23 | 94.7 |
| Msa0864330 | MtrunA17_Chr4g0076381 | 45.283 | 106 | 53 | 1 | 4 | 109 | 46 | 146 | 6.34e-22 | 92.8 |
| Msa0864330 | MtrunA17_Chr1g0165041 | 42.991 | 107 | 53 | 2 | 9 | 115 | 2 | 100 | 3.60e-21 | 89.4 |
| Msa0864330 | MtrunA17_Chr4g0076321 | 44.545 | 110 | 51 | 3 | 3 | 110 | 7 | 108 | 1.51e-20 | 86.3 |
| Msa0864330 | MtrunA17_Chr4g0067091 | 40.000 | 120 | 61 | 2 | 1 | 114 | 1 | 115 | 5.19e-20 | 87.0 |
| Msa0864330 | MtrunA17_Chr1g0191981 | 42.000 | 100 | 53 | 1 | 13 | 112 | 1 | 95 | 3.89e-19 | 82.0 |
| Msa0864330 | MtrunA17_Chr5g0446491 | 45.000 | 100 | 47 | 2 | 10 | 109 | 20 | 111 | 6.72e-19 | 82.8 |
| Msa0864330 | MtrunA17_Chr3g0102351 | 45.745 | 94 | 46 | 1 | 16 | 109 | 27 | 115 | 6.92e-19 | 83.2 |
| Msa0864330 | MtrunA17_Chr2g0296321 | 43.158 | 95 | 49 | 1 | 15 | 109 | 65 | 154 | 9.47e-19 | 84.3 |
| Msa0864330 | MtrunA17_Chr1g0185911 | 40.777 | 103 | 56 | 1 | 9 | 111 | 22 | 119 | 1.46e-18 | 81.6 |
| Msa0864330 | MtrunA17_Chr2g0290491 | 41.667 | 108 | 55 | 2 | 3 | 110 | 7 | 106 | 1.92e-18 | 81.3 |
| Msa0864330 | MtrunA17_Chr8g0382931 | 41.584 | 101 | 51 | 2 | 10 | 110 | 25 | 117 | 3.13e-17 | 79.0 |
| Msa0864330 | MtrunA17_Chr5g0446561 | 69.159 | 107 | 19 | 4 | 89 | 191 | 1 | 97 | 1.32e-16 | 74.3 |
| Msa0864330 | MtrunA17_Chr7g0263601 | 37.963 | 108 | 61 | 2 | 3 | 110 | 14 | 115 | 1.86e-16 | 75.9 |
| Msa0864330 | MtrunA17_Chr1g0195851 | 39.423 | 104 | 58 | 1 | 7 | 110 | 27 | 125 | 1.89e-16 | 76.6 |
| Msa0864330 | MtrunA17_Chr7g0255761 | 84.615 | 39 | 6 | 0 | 204 | 242 | 288 | 326 | 2.05e-15 | 75.9 |
| Msa0864330 | MtrunA17_Chr8g0384451 | 38.947 | 95 | 53 | 1 | 15 | 109 | 39 | 128 | 2.75e-15 | 73.6 |
| Msa0864330 | MtrunA17_Chr6g0484551 | 38.843 | 121 | 70 | 2 | 202 | 321 | 465 | 582 | 5.02e-15 | 75.9 |
| Msa0864330 | MtrunA17_Chr8g0352831 | 41.406 | 128 | 63 | 5 | 203 | 321 | 501 | 625 | 7.36e-15 | 75.5 |
| Msa0864330 | MtrunA17_Chr8g0348931 | 42.149 | 121 | 65 | 3 | 202 | 321 | 498 | 614 | 4.68e-14 | 73.2 |
| Msa0864330 | MtrunA17_Chr3g0091061 | 37.398 | 123 | 71 | 2 | 202 | 321 | 490 | 609 | 7.03e-14 | 72.8 |
| Msa0864330 | MtrunA17_Chr3g0090651 | 37.398 | 123 | 71 | 2 | 202 | 321 | 490 | 609 | 1.17e-13 | 72.0 |
| Msa0864330 | MtrunA17_Chr3g0089541 | 41.322 | 121 | 66 | 3 | 202 | 321 | 495 | 611 | 1.40e-13 | 71.6 |
| Msa0864330 | MtrunA17_Chr3g0091081 | 38.017 | 121 | 71 | 2 | 202 | 321 | 490 | 607 | 1.61e-13 | 71.6 |
| Msa0864330 | MtrunA17_Chr1g0147141 | 37.500 | 120 | 71 | 2 | 204 | 322 | 495 | 611 | 4.23e-13 | 70.1 |
| Msa0864330 | MtrunA17_Chr3g0092291 | 40.000 | 120 | 63 | 4 | 205 | 321 | 46 | 159 | 5.28e-13 | 69.3 |
| Msa0864330 | MtrunA17_Chr3g0089651 | 40.157 | 127 | 60 | 5 | 202 | 321 | 495 | 612 | 1.98e-12 | 68.2 |
| Msa0864330 | MtrunA17_Chr3g0090691 | 35.772 | 123 | 73 | 2 | 202 | 321 | 490 | 609 | 3.25e-12 | 67.4 |
| Msa0864330 | MtrunA17_Chr3g0089591 | 39.669 | 121 | 68 | 3 | 202 | 321 | 496 | 612 | 7.20e-12 | 66.6 |
| Msa0864330 | MtrunA17_Chr3g0089251 | 39.850 | 133 | 52 | 7 | 202 | 321 | 520 | 637 | 7.93e-12 | 66.2 |
| Msa0864330 | MtrunA17_Chr3g0089911 | 39.344 | 122 | 68 | 3 | 202 | 321 | 490 | 607 | 7.95e-12 | 66.2 |
| Msa0864330 | MtrunA17_Chr3g0089211 | 39.850 | 133 | 52 | 7 | 202 | 321 | 538 | 655 | 8.81e-12 | 66.2 |
| Msa0864330 | MtrunA17_Chr3g0090431 | 39.669 | 121 | 69 | 2 | 202 | 321 | 363 | 480 | 1.05e-11 | 65.9 |
| Msa0864330 | MtrunA17_Chr3g0089781 | 39.200 | 125 | 64 | 3 | 202 | 321 | 491 | 608 | 1.21e-11 | 65.9 |
| Msa0864330 | MtrunA17_Chr3g0089441 | 41.525 | 118 | 64 | 3 | 205 | 321 | 1 | 114 | 1.30e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0090401 | 41.129 | 124 | 63 | 3 | 202 | 321 | 702 | 819 | 1.37e-11 | 65.9 |
| Msa0864330 | MtrunA17_Chr3g0113781 | 37.097 | 124 | 70 | 5 | 204 | 322 | 268 | 388 | 1.41e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0113791 | 37.097 | 124 | 70 | 5 | 204 | 322 | 473 | 593 | 1.42e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0089811 | 39.200 | 125 | 64 | 4 | 202 | 321 | 491 | 608 | 1.46e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0089991 | 36.090 | 133 | 57 | 7 | 202 | 321 | 495 | 612 | 1.52e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0090141 | 40.000 | 125 | 61 | 3 | 203 | 321 | 492 | 608 | 1.63e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0089961 | 38.710 | 124 | 66 | 4 | 202 | 321 | 494 | 611 | 1.67e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr3g0090371 | 37.302 | 126 | 64 | 3 | 202 | 321 | 491 | 607 | 1.72e-11 | 65.5 |
| Msa0864330 | MtrunA17_Chr8g0352861 | 34.307 | 137 | 84 | 3 | 190 | 321 | 484 | 619 | 3.60e-11 | 64.3 |
| Msa0864330 | MtrunA17_Chr1g0164391 | 31.818 | 132 | 81 | 2 | 196 | 322 | 485 | 612 | 3.66e-11 | 64.3 |
| Msa0864330 | MtrunA17_Chr3g0089501 | 39.344 | 122 | 68 | 3 | 202 | 321 | 489 | 606 | 3.81e-11 | 64.3 |
| Msa0864330 | MtrunA17_Chr3g0092241 | 39.200 | 125 | 64 | 4 | 202 | 321 | 491 | 608 | 4.14e-11 | 64.3 |
| Msa0864330 | MtrunA17_Chr3g0092261 | 36.054 | 147 | 80 | 5 | 182 | 321 | 513 | 652 | 4.93e-11 | 63.9 |
| Msa0864330 | MtrunA17_Chr3g0089601 | 39.344 | 122 | 68 | 3 | 202 | 321 | 489 | 606 | 5.03e-11 | 63.9 |
| Msa0864330 | MtrunA17_Chr8g0392511 | 38.095 | 126 | 68 | 3 | 202 | 321 | 48 | 169 | 7.01e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864330 | AT1G21970.1 | 46.078 | 102 | 47 | 2 | 8 | 109 | 54 | 147 | 8.67e-22 | 92.4 |
| Msa0864330 | AT5G47670.2 | 45.714 | 105 | 49 | 2 | 5 | 109 | 21 | 117 | 2.67e-21 | 90.5 |
| Msa0864330 | AT5G47670.1 | 45.714 | 105 | 49 | 2 | 5 | 109 | 50 | 146 | 4.23e-21 | 90.5 |
| Msa0864330 | AT5G47670.3 | 45.714 | 105 | 49 | 2 | 5 | 109 | 50 | 146 | 4.23e-21 | 90.5 |
| Msa0864330 | AT5G47640.1 | 47.368 | 95 | 45 | 1 | 16 | 110 | 27 | 116 | 3.33e-19 | 84.3 |
| Msa0864330 | AT4G14540.1 | 44.554 | 101 | 48 | 2 | 9 | 109 | 17 | 109 | 3.59e-19 | 83.6 |
| Msa0864330 | AT2G47810.1 | 36.719 | 128 | 66 | 3 | 1 | 119 | 37 | 158 | 2.06e-18 | 81.3 |
| Msa0864330 | AT2G38880.7 | 36.697 | 109 | 61 | 2 | 3 | 111 | 11 | 111 | 3.71e-17 | 77.4 |
| Msa0864330 | AT1G09030.1 | 39.362 | 94 | 52 | 1 | 19 | 112 | 6 | 94 | 1.33e-16 | 75.9 |
| Msa0864330 | AT3G53340.3 | 38.182 | 110 | 62 | 2 | 8 | 117 | 22 | 125 | 1.82e-16 | 75.9 |
| Msa0864330 | AT3G53340.2 | 38.182 | 110 | 62 | 2 | 8 | 117 | 22 | 125 | 1.82e-16 | 75.9 |
| Msa0864330 | AT2G37060.2 | 40.385 | 104 | 52 | 3 | 8 | 107 | 23 | 120 | 2.15e-16 | 76.3 |
| Msa0864330 | AT2G37060.3 | 40.385 | 104 | 52 | 3 | 8 | 107 | 23 | 120 | 2.15e-16 | 76.3 |
| Msa0864330 | AT2G37060.1 | 40.385 | 104 | 52 | 3 | 8 | 107 | 23 | 120 | 2.15e-16 | 76.3 |
| Msa0864330 | AT2G38880.2 | 37.615 | 109 | 56 | 3 | 3 | 107 | 11 | 111 | 2.19e-16 | 75.5 |
| Msa0864330 | AT2G38880.1 | 37.615 | 109 | 56 | 3 | 3 | 107 | 11 | 111 | 2.19e-16 | 75.5 |
| Msa0864330 | AT2G38880.5 | 37.615 | 109 | 56 | 3 | 3 | 107 | 11 | 111 | 2.19e-16 | 75.5 |
| Msa0864330 | AT2G38880.11 | 38.182 | 110 | 56 | 3 | 3 | 108 | 11 | 112 | 2.26e-16 | 75.9 |
| Msa0864330 | AT2G38880.8 | 38.182 | 110 | 56 | 3 | 3 | 108 | 11 | 112 | 2.26e-16 | 75.9 |
| Msa0864330 | AT2G38880.3 | 36.111 | 108 | 61 | 2 | 3 | 110 | 11 | 110 | 2.46e-16 | 75.1 |
| Msa0864330 | AT3G53340.4 | 39.806 | 103 | 56 | 2 | 8 | 110 | 22 | 118 | 2.67e-16 | 74.7 |
| Msa0864330 | AT3G53340.5 | 40.385 | 104 | 52 | 3 | 8 | 107 | 22 | 119 | 3.67e-16 | 75.5 |
| Msa0864330 | AT3G53340.1 | 40.385 | 104 | 52 | 3 | 8 | 107 | 22 | 119 | 3.67e-16 | 75.5 |
| Msa0864330 | AT2G38880.4 | 39.175 | 97 | 50 | 2 | 16 | 108 | 21 | 112 | 5.62e-16 | 73.2 |
| Msa0864330 | AT2G38880.9 | 38.947 | 95 | 53 | 1 | 16 | 110 | 21 | 110 | 3.14e-15 | 72.4 |
| Msa0864330 | AT2G38880.10 | 38.947 | 95 | 53 | 1 | 16 | 110 | 21 | 110 | 3.14e-15 | 72.4 |
| Msa0864330 | AT2G38880.6 | 38.947 | 95 | 53 | 1 | 16 | 110 | 21 | 110 | 3.14e-15 | 72.4 |
| Msa0864330 | AT2G13570.1 | 37.895 | 95 | 54 | 1 | 15 | 109 | 35 | 124 | 1.71e-13 | 68.9 |
Find 58 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGATCCATTTATGTTATT+TGG | 0.119830 | 5_4:+64666946 | Msa0864330:CDS |
| GGTGGAGGTGGAGGTGGAGG+TGG | 0.198766 | 5_4:-64664347 | None:intergenic |
| GATGGTGGTGGAGGTGGAGG+TGG | 0.242508 | 5_4:-64664353 | None:intergenic |
| GGTGGTGGAGGTGGAGGTGG+AGG | 0.261943 | 5_4:-64664350 | None:intergenic |
| GGTGATGGTGGTGGAGGTGG+AGG | 0.273323 | 5_4:-64664356 | None:intergenic |
| TACAATCTAACTTGCAATAA+TGG | 0.273922 | 5_4:-64664196 | None:intergenic |
| CCTGATCTAACTTGCAATAA+TGG | 0.274206 | 5_4:-64664169 | None:intergenic |
| GGAGGTGGAGGTGGAGGTGG+GGG | 0.276683 | 5_4:-64664344 | None:intergenic |
| AGATATCCAAATAACATAAA+TGG | 0.290214 | 5_4:-64666952 | None:intergenic |
| GTGGAGGTGGAGGTGGAGGT+GGG | 0.327374 | 5_4:-64664346 | None:intergenic |
| TGGAGGTGGAGGTGGAGGTG+GGG | 0.332226 | 5_4:-64664345 | None:intergenic |
| GGTGGTGATGGTGGTGGAGG+TGG | 0.342090 | 5_4:-64664359 | None:intergenic |
| GGGTTGGCAAACACAAAGTT+TGG | 0.350564 | 5_4:-64664416 | None:intergenic |
| TGTGGTGGTGATGGTGGTGG+AGG | 0.403535 | 5_4:-64664362 | None:intergenic |
| AGAGAACTTGGTGGTGGTGG+TGG | 0.403731 | 5_4:+64664491 | Msa0864330:CDS |
| ATCAGTTCACCTATTGAATC+AGG | 0.410708 | 5_4:-64666929 | None:intergenic |
| CTTGGAAATGAAAGAAAGAT+TGG | 0.426762 | 5_4:+64666692 | Msa0864330:CDS |
| TCAGGCAATGCATCAAGATA+TGG | 0.426989 | 5_4:-64666911 | None:intergenic |
| GATGCATTGCCTGATTCAAT+AGG | 0.441990 | 5_4:+64666920 | Msa0864330:CDS |
| GTTTGCCAACCCAACAGAAA+TGG | 0.446949 | 5_4:+64664427 | Msa0864330:CDS |
| TGCACCCATTTCTGTTGGGT+TGG | 0.454450 | 5_4:-64664432 | None:intergenic |
| CATCATTTCCTTGCTTTCAT+CGG | 0.454642 | 5_4:-64664099 | None:intergenic |
| ATTTAGCTACGTTGCTCGGT+GGG | 0.471945 | 5_4:+64666645 | Msa0864330:CDS |
| TATATGTAAATGTTAGAGAA+TGG | 0.475853 | 5_4:+64663969 | None:intergenic |
| CACGATTTAGCTACGTTGCT+CGG | 0.476591 | 5_4:+64666641 | Msa0864330:CDS |
| AAATTGCACCCATTTCTGTT+GGG | 0.479387 | 5_4:-64664436 | None:intergenic |
| TTGGCCGAGCAAAACATCTT+CGG | 0.482704 | 5_4:+64666780 | Msa0864330:CDS |
| CAATCTATGCACATTGGCAA+TGG | 0.483306 | 5_4:-64664042 | None:intergenic |
| AAAATTGCACCCATTTCTGT+TGG | 0.484335 | 5_4:-64664437 | None:intergenic |
| CCATTATTGCAAGTTAGATC+AGG | 0.486813 | 5_4:+64664169 | Msa0864330:CDS |
| TCTTGCACCCTCGAACTAGC+TGG | 0.492382 | 5_4:-64663999 | None:intergenic |
| GCCTGTGGTGGTGATGGTGG+TGG | 0.498320 | 5_4:-64664365 | None:intergenic |
| CGATGAAAGCAAGGAAATGA+TGG | 0.499610 | 5_4:+64664100 | Msa0864330:CDS |
| ATCTAACTTGCAATAATGGT+TGG | 0.501533 | 5_4:-64664192 | None:intergenic |
| AATCTATGCACATTGGCAAT+GGG | 0.506843 | 5_4:-64664041 | None:intergenic |
| TATTACAGAACAGAAGAACT+TGG | 0.508001 | 5_4:+64666674 | Msa0864330:CDS |
| ATCTAACTTGCAATAATGGT+TGG | 0.512109 | 5_4:-64664165 | None:intergenic |
| GATAGAGAACTTGGTGGTGG+TGG | 0.519708 | 5_4:+64664488 | Msa0864330:CDS |
| TCCACCACCATCACCACCAC+AGG | 0.530447 | 5_4:+64664364 | Msa0864330:CDS |
| CACATTCACTGATCCAATCT+CGG | 0.532144 | 5_4:+64666742 | Msa0864330:CDS |
| TTTGCCAACCCAACAGAAAT+GGG | 0.535965 | 5_4:+64664428 | Msa0864330:CDS |
| GATGATGATGATAGAGAACT+TGG | 0.547404 | 5_4:+64664479 | Msa0864330:CDS |
| GAGTGCAACCAGCTAGTTCG+AGG | 0.550758 | 5_4:+64663991 | Msa0864330:CDS |
| CATTAGCTTTGTTACTGCTG+AGG | 0.551315 | 5_4:+64664142 | Msa0864330:CDS |
| TTTCATCAATCTATGCACAT+TGG | 0.552004 | 5_4:-64664048 | None:intergenic |
| ATGCACATTGGCAATGGGAA+AGG | 0.554205 | 5_4:-64664036 | None:intergenic |
| TGAAAAGCCTGTGGTGGTGA+TGG | 0.562690 | 5_4:-64664371 | None:intergenic |
| TTTAGCTACGTTGCTCGGTG+GGG | 0.564684 | 5_4:+64666646 | Msa0864330:CDS |
| ACGTAGCTAAATCGTGCACT+AGG | 0.589809 | 5_4:-64666634 | None:intergenic |
| GATGATGATAGAGAACTTGG+TGG | 0.615654 | 5_4:+64664482 | Msa0864330:CDS |
| AAAGCCTGTGGTGGTGATGG+TGG | 0.618833 | 5_4:-64664368 | None:intergenic |
| AAATTCGACAAAATGATGCA+TGG | 0.620711 | 5_4:-64666854 | None:intergenic |
| GATTTAGCTACGTTGCTCGG+TGG | 0.622111 | 5_4:+64666644 | Msa0864330:CDS |
| GGTGATGGCAACTCAAGTGA+TGG | 0.623580 | 5_4:+64664515 | Msa0864330:CDS |
| GATGATAGAGAACTTGGTGG+TGG | 0.661700 | 5_4:+64664485 | Msa0864330:CDS |
| AGTGCAACCAGCTAGTTCGA+GGG | 0.693334 | 5_4:+64663992 | Msa0864330:CDS |
| TGAGCTTGAAAAGCCTGTGG+TGG | 0.715442 | 5_4:-64664377 | None:intergenic |
| TCATGAGCTTGAAAAGCCTG+TGG | 0.741828 | 5_4:-64664380 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTTAAATAATACTAATA+AGG | + | chr5_4:64664646-64664665 | Msa0864330:intron | 10.0% |
| !!! | AAGTAAAAAATGATTTTTTT+AGG | + | chr5_4:64665334-64665353 | Msa0864330:intron | 10.0% |
| !! | GAAAAATTGATATATTTATA+AGG | + | chr5_4:64665397-64665416 | Msa0864330:intron | 10.0% |
| !! | AAAAAAAAACTTGCATTAAT+TGG | + | chr5_4:64665220-64665239 | Msa0864330:intron | 15.0% |
| !!! | TACATGATTAAATATGTTTT+TGG | - | chr5_4:64665424-64665443 | None:intergenic | 15.0% |
| !!! | GAGAAACTTACATTTTATTT+GGG | - | chr5_4:64664750-64664769 | None:intergenic | 20.0% |
| !!! | AGAGAAACTTACATTTTATT+TGG | - | chr5_4:64664751-64664770 | None:intergenic | 20.0% |
| !! | ATCTATAACAAAAGATAACA+TGG | - | chr5_4:64664983-64665002 | None:intergenic | 20.0% |
| !!! | GCAAGTTTTTTTTTTCTTTT+TGG | - | chr5_4:64665214-64665233 | None:intergenic | 20.0% |
| !! | CCAAATTAATGAAAAATTGT+CGG | + | chr5_4:64665473-64665492 | Msa0864330:intron | 20.0% |
| !! | TCATGAACATATAAATTGTA+AGG | - | chr5_4:64665980-64665999 | None:intergenic | 20.0% |
| !! | AGATATCCAAATAACATAAA+TGG | - | chr5_4:64666955-64666974 | None:intergenic | 20.0% |
| !! | TACAATCTAACTTGCAATAA+TGG | - | chr5_4:64664199-64664218 | None:intergenic | 25.0% |
| ! | TTAGCTACTATGCAAAAATT+GGG | + | chr5_4:64664245-64664264 | Msa0864330:CDS | 25.0% |
| ! | GAACAGATAAAAACAACTTA+TGG | - | chr5_4:64664908-64664927 | None:intergenic | 25.0% |
| !! | TTGTTTTCATAAACGATCTT+GGG | - | chr5_4:64664945-64664964 | None:intergenic | 25.0% |
| !!! | AGATATAAGTGCTTTTGTTT+AGG | - | chr5_4:64665015-64665034 | None:intergenic | 25.0% |
| ! | AATTTATAGCTATACTGAAG+TGG | + | chr5_4:64665155-64665174 | Msa0864330:intron | 25.0% |
| ! | ATTTATAGCTATACTGAAGT+GGG | + | chr5_4:64665156-64665175 | Msa0864330:intron | 25.0% |
| ! | TACTTATAAATGTGATCGAA+GGG | - | chr5_4:64665319-64665338 | None:intergenic | 25.0% |
| ! | TTACTTATAAATGTGATCGA+AGG | - | chr5_4:64665320-64665339 | None:intergenic | 25.0% |
| !! | CCGACAATTTTTCATTAATT+TGG | - | chr5_4:64665476-64665495 | None:intergenic | 25.0% |
| ! | GTGTCAATTTATTTATCACA+AGG | - | chr5_4:64665889-64665908 | None:intergenic | 25.0% |
| ! | TTGAAGTCAATTTGATTCAA+AGG | + | chr5_4:64666333-64666352 | Msa0864330:intron | 25.0% |
| ! | ACTGATCCATTTATGTTATT+TGG | + | chr5_4:64666946-64666965 | Msa0864330:CDS | 25.0% |
| TTTCATCAATCTATGCACAT+TGG | - | chr5_4:64664051-64664070 | None:intergenic | 30.0% | |
| AAAAATAACCGATGAAAGCA+AGG | + | chr5_4:64664091-64664110 | Msa0864330:CDS | 30.0% | |
| ! | ATCTAACTTGCAATAATGGT+TGG | - | chr5_4:64664168-64664187 | None:intergenic | 30.0% |
| ! | ATCTAACTTGCAATAATGGT+TGG | - | chr5_4:64664168-64664187 | None:intergenic | 30.0% |
| GTTAGCTACTATGCAAAAAT+TGG | + | chr5_4:64664244-64664263 | Msa0864330:CDS | 30.0% | |
| ! | TCAAGCTCATGATTTTTCAT+TGG | + | chr5_4:64664391-64664410 | Msa0864330:CDS | 30.0% |
| ACGCTTGTGAAATTATTTGA+AGG | + | chr5_4:64664856-64664875 | Msa0864330:intron | 30.0% | |
| ! | TGTTTTCATAAACGATCTTG+GGG | - | chr5_4:64664944-64664963 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAACGATCT+TGG | - | chr5_4:64664946-64664965 | None:intergenic | 30.0% |
| !! | CTACTTGTTAGCTAAGTTTT+AGG | - | chr5_4:64665066-64665085 | None:intergenic | 30.0% |
| TTTATAGCTATACTGAAGTG+GGG | + | chr5_4:64665157-64665176 | Msa0864330:intron | 30.0% | |
| TTGAAAACCGTATGTTGAAT+CGG | + | chr5_4:64665187-64665206 | Msa0864330:intron | 30.0% | |
| ATCATCATACTAACTCAAGT+GGG | - | chr5_4:64665610-64665629 | None:intergenic | 30.0% | |
| TATCATCATACTAACTCAAG+TGG | - | chr5_4:64665611-64665630 | None:intergenic | 30.0% | |
| TTCGATTCTTTGTACCAATT+TGG | + | chr5_4:64665700-64665719 | Msa0864330:intron | 30.0% | |
| ! | AATGCTAACTTGTGTCTTAA+GGG | - | chr5_4:64665955-64665974 | None:intergenic | 30.0% |
| ! | AAATGCTAACTTGTGTCTTA+AGG | - | chr5_4:64665956-64665975 | None:intergenic | 30.0% |
| !! | TTCTGTGGTTCTAGATATTT+GGG | - | chr5_4:64666107-64666126 | None:intergenic | 30.0% |
| CACTAAAAGCTTAACTAGTT+CGG | - | chr5_4:64666180-64666199 | None:intergenic | 30.0% | |
| ! | AAGAGACATGTTTTGTAAGT+TGG | + | chr5_4:64666580-64666599 | Msa0864330:CDS | 30.0% |
| TATTACAGAACAGAAGAACT+TGG | + | chr5_4:64666674-64666693 | Msa0864330:CDS | 30.0% | |
| CTTGGAAATGAAAGAAAGAT+TGG | + | chr5_4:64666692-64666711 | Msa0864330:CDS | 30.0% | |
| AAATGAAAAATGTCGAGTCT+TGG | - | chr5_4:64666720-64666739 | None:intergenic | 30.0% | |
| ! | TCGGAAAACTTTGATGTTTT+TGG | + | chr5_4:64666761-64666780 | Msa0864330:CDS | 30.0% |
| !! | TTTCATTTTTGAATGGAGGA+TGG | - | chr5_4:64666829-64666848 | None:intergenic | 30.0% |
| TCCTCCATTCAAAAATGAAA+AGG | + | chr5_4:64666829-64666848 | Msa0864330:CDS | 30.0% | |
| AAATTCGACAAAATGATGCA+TGG | - | chr5_4:64666857-64666876 | None:intergenic | 30.0% | |
| AATCTATGCACATTGGCAAT+GGG | - | chr5_4:64664044-64664063 | None:intergenic | 35.0% | |
| !!! | TCGGTTATTTTTGCATGTTG+AGG | - | chr5_4:64664083-64664102 | None:intergenic | 35.0% |
| CATCATTTCCTTGCTTTCAT+CGG | - | chr5_4:64664102-64664121 | None:intergenic | 35.0% | |
| ! | CCTGATCTAACTTGCAATAA+TGG | - | chr5_4:64664172-64664191 | None:intergenic | 35.0% |
| CCATTATTGCAAGTTAGATC+AGG | + | chr5_4:64664169-64664188 | Msa0864330:CDS | 35.0% | |
| !!! | TACATCCAACTTTTTCGTCA+TGG | + | chr5_4:64664299-64664318 | Msa0864330:CDS | 35.0% |
| AAATTGCACCCATTTCTGTT+GGG | - | chr5_4:64664439-64664458 | None:intergenic | 35.0% | |
| AAAATTGCACCCATTTCTGT+TGG | - | chr5_4:64664440-64664459 | None:intergenic | 35.0% | |
| ! | ACAGAAATGGGTGCAATTTT+AGG | + | chr5_4:64664440-64664459 | Msa0864330:CDS | 35.0% |
| ! | GATGATGATGATAGAGAACT+TGG | + | chr5_4:64664479-64664498 | Msa0864330:CDS | 35.0% |
| ATTTCCTTAAGTGATGTGCA+TGG | + | chr5_4:64664582-64664601 | Msa0864330:intron | 35.0% | |
| !! | GATATGAGAGTATTATTGCG+AGG | + | chr5_4:64664682-64664701 | Msa0864330:intron | 35.0% |
| TAAGCAAATGAAAACGACCT+TGG | - | chr5_4:64664813-64664832 | None:intergenic | 35.0% | |
| !!! | AGCTAAGTTTTAGGAAGTAG+CGG | - | chr5_4:64665057-64665076 | None:intergenic | 35.0% |
| TTATAGCTATACTGAAGTGG+GGG | + | chr5_4:64665158-64665177 | Msa0864330:intron | 35.0% | |
| ! | TTTTGGTCCGATTCAACATA+CGG | - | chr5_4:64665197-64665216 | None:intergenic | 35.0% |
| AATGATGTCCACAATTACTC+AGG | + | chr5_4:64665266-64665285 | Msa0864330:intron | 35.0% | |
| TCATCATTCCTGAGTAATTG+TGG | - | chr5_4:64665277-64665296 | None:intergenic | 35.0% | |
| ACAATTACTCAGGAATGATG+AGG | + | chr5_4:64665276-64665295 | Msa0864330:intron | 35.0% | |
| TGTCTCAAGTCAATACAACT+AGG | - | chr5_4:64665652-64665671 | None:intergenic | 35.0% | |
| GCAAAATTAGCACACCAAAT+TGG | - | chr5_4:64665717-64665736 | None:intergenic | 35.0% | |
| AACCTTAACATGTGCTCTTA+GGG | - | chr5_4:64665824-64665843 | None:intergenic | 35.0% | |
| AAACCTTAACATGTGCTCTT+AGG | - | chr5_4:64665825-64665844 | None:intergenic | 35.0% | |
| !! | GTTCTGTGGTTCTAGATATT+TGG | - | chr5_4:64666108-64666127 | None:intergenic | 35.0% |
| TCATTGAAATTGTCCTTGAC+AGG | + | chr5_4:64666267-64666286 | Msa0864330:intron | 35.0% | |
| AAGACTCTGCTGTTAACAAA+TGG | + | chr5_4:64666417-64666436 | Msa0864330:intron | 35.0% | |
| ! | CTATGTTGCTGATGACATTT+TGG | + | chr5_4:64666463-64666482 | Msa0864330:intron | 35.0% |
| ! | ACATCAAAGTTTTCCGAGAT+TGG | - | chr5_4:64666758-64666777 | None:intergenic | 35.0% |
| !! | GCCTTTTCATTTTTGAATGG+AGG | - | chr5_4:64666833-64666852 | None:intergenic | 35.0% |
| !! | GGTGCCTTTTCATTTTTGAA+TGG | - | chr5_4:64666836-64666855 | None:intergenic | 35.0% |
| ATCAGTTCACCTATTGAATC+AGG | - | chr5_4:64666932-64666951 | None:intergenic | 35.0% | |
| CAATCTATGCACATTGGCAA+TGG | - | chr5_4:64664045-64664064 | None:intergenic | 40.0% | |
| CGATGAAAGCAAGGAAATGA+TGG | + | chr5_4:64664100-64664119 | Msa0864330:CDS | 40.0% | |
| !! | CATTAGCTTTGTTACTGCTG+AGG | + | chr5_4:64664142-64664161 | Msa0864330:CDS | 40.0% |
| ! | AAAAAGTTGGATGTAGCGGA+AGG | - | chr5_4:64664294-64664313 | None:intergenic | 40.0% |
| GACGAAAAAGTTGGATGTAG+CGG | - | chr5_4:64664298-64664317 | None:intergenic | 40.0% | |
| TTTGCCAACCCAACAGAAAT+GGG | + | chr5_4:64664428-64664447 | Msa0864330:CDS | 40.0% | |
| GATGATGATAGAGAACTTGG+TGG | + | chr5_4:64664482-64664501 | Msa0864330:CDS | 40.0% | |
| AGTATTATTGCGAGGTTGCT+AGG | + | chr5_4:64664690-64664709 | Msa0864330:intron | 40.0% | |
| ! | CTTGGTGCAAGAACTAATAC+AGG | - | chr5_4:64664795-64664814 | None:intergenic | 40.0% |
| ! | CTGTATTAGTTCTTGCACCA+AGG | + | chr5_4:64664793-64664812 | Msa0864330:intron | 40.0% |
| !! | TCCAAGAGCGTTAATAAGCT+AGG | + | chr5_4:64665573-64665592 | Msa0864330:intron | 40.0% |
| ACCTAGCTTATTAACGCTCT+TGG | - | chr5_4:64665577-64665596 | None:intergenic | 40.0% | |
| ! | ATCTAGAACCACAGAACAAG+CGG | + | chr5_4:64666111-64666130 | Msa0864330:intron | 40.0% |
| AATACAATCCGCTTGTTCTG+TGG | - | chr5_4:64666122-64666141 | None:intergenic | 40.0% | |
| TCAGGATCAAGAAAGGTTCT+AGG | - | chr5_4:64666205-64666224 | None:intergenic | 40.0% | |
| ACCTTTCTTGATCCTGATCA+TGG | + | chr5_4:64666208-64666227 | Msa0864330:intron | 40.0% | |
| ! | AGGTTCTTGACTTGATACGT+GGG | + | chr5_4:64666303-64666322 | Msa0864330:intron | 40.0% |
| ! | TAGCAGCTTTAGTAGAGATG+TGG | - | chr5_4:64666490-64666509 | None:intergenic | 40.0% |
| ! | CTACTAAAGCTGCTACTTCT+TGG | + | chr5_4:64666495-64666514 | Msa0864330:intron | 40.0% |
| ! | TGCTACTTCTTGGAAGAACA+AGG | + | chr5_4:64666505-64666524 | Msa0864330:intron | 40.0% |
| CACATTCACTGATCCAATCT+CGG | + | chr5_4:64666742-64666761 | Msa0864330:CDS | 40.0% | |
| TCAGGCAATGCATCAAGATA+TGG | - | chr5_4:64666914-64666933 | None:intergenic | 40.0% | |
| GATGCATTGCCTGATTCAAT+AGG | + | chr5_4:64666920-64666939 | Msa0864330:CDS | 40.0% | |
| ATGCACATTGGCAATGGGAA+AGG | - | chr5_4:64664039-64664058 | None:intergenic | 45.0% | |
| GAGCACCATGACGAAAAAGT+TGG | - | chr5_4:64664307-64664326 | None:intergenic | 45.0% | |
| TCATGAGCTTGAAAAGCCTG+TGG | - | chr5_4:64664383-64664402 | None:intergenic | 45.0% | |
| ! | GGGTTGGCAAACACAAAGTT+TGG | - | chr5_4:64664419-64664438 | None:intergenic | 45.0% |
| GTTTGCCAACCCAACAGAAA+TGG | + | chr5_4:64664427-64664446 | Msa0864330:CDS | 45.0% | |
| ! | GATGATAGAGAACTTGGTGG+TGG | + | chr5_4:64664485-64664504 | Msa0864330:CDS | 45.0% |
| ACTGCCATGCACATCACTTA+AGG | - | chr5_4:64664589-64664608 | None:intergenic | 45.0% | |
| AGTGATGTGCATGGCAGTAT+TGG | + | chr5_4:64664591-64664610 | Msa0864330:intron | 45.0% | |
| !! | CATAAGAGTGTTCTCCTCCA+AGG | + | chr5_4:64665670-64665689 | Msa0864330:intron | 45.0% |
| AAGAATCGAACCAGAGACCT+TGG | - | chr5_4:64665690-64665709 | None:intergenic | 45.0% | |
| ! | TGCCCTAAGAGCACATGTTA+AGG | + | chr5_4:64665819-64665838 | Msa0864330:intron | 45.0% |
| GCCATGATCAGGATCAAGAA+AGG | - | chr5_4:64666212-64666231 | None:intergenic | 45.0% | |
| CGTATCAAGTCAAGAACCTC+AGG | - | chr5_4:64666302-64666321 | None:intergenic | 45.0% | |
| ! | GAGGTTCTTGACTTGATACG+TGG | + | chr5_4:64666302-64666321 | Msa0864330:intron | 45.0% |
| TTGGAAGAACAAGGAGAAGC+AGG | + | chr5_4:64666514-64666533 | Msa0864330:intron | 45.0% | |
| ACGTAGCTAAATCGTGCACT+AGG | - | chr5_4:64666637-64666656 | None:intergenic | 45.0% | |
| CACGATTTAGCTACGTTGCT+CGG | + | chr5_4:64666641-64666660 | Msa0864330:CDS | 45.0% | |
| ATTTAGCTACGTTGCTCGGT+GGG | + | chr5_4:64666645-64666664 | Msa0864330:CDS | 45.0% | |
| TTGGCCGAGCAAAACATCTT+CGG | + | chr5_4:64666780-64666799 | Msa0864330:CDS | 45.0% | |
| ! | ACGTCCGAAGATGTTTTGCT+CGG | - | chr5_4:64666787-64666806 | None:intergenic | 45.0% |
| AGTGCAACCAGCTAGTTCGA+GGG | + | chr5_4:64663992-64664011 | Msa0864330:CDS | 50.0% | |
| ! | TGAAAAGCCTGTGGTGGTGA+TGG | - | chr5_4:64664374-64664393 | None:intergenic | 50.0% |
| TGAGCTTGAAAAGCCTGTGG+TGG | - | chr5_4:64664380-64664399 | None:intergenic | 50.0% | |
| TGCACCCATTTCTGTTGGGT+TGG | - | chr5_4:64664435-64664454 | None:intergenic | 50.0% | |
| !! | GATAGAGAACTTGGTGGTGG+TGG | + | chr5_4:64664488-64664507 | Msa0864330:CDS | 50.0% |
| ! | GGTGATGGCAACTCAAGTGA+TGG | + | chr5_4:64664515-64664534 | Msa0864330:CDS | 50.0% |
| TAGCTATACTGAAGTGGGGG+AGG | + | chr5_4:64665161-64665180 | Msa0864330:intron | 50.0% | |
| AATCGAACCAGAGACCTTGG+AGG | - | chr5_4:64665687-64665706 | None:intergenic | 50.0% | |
| GATTTAGCTACGTTGCTCGG+TGG | + | chr5_4:64666644-64666663 | Msa0864330:CDS | 50.0% | |
| ! | TTTAGCTACGTTGCTCGGTG+GGG | + | chr5_4:64666646-64666665 | Msa0864330:CDS | 50.0% |
| GAGTGCAACCAGCTAGTTCG+AGG | + | chr5_4:64663991-64664010 | Msa0864330:CDS | 55.0% | |
| TCTTGCACCCTCGAACTAGC+TGG | - | chr5_4:64664002-64664021 | None:intergenic | 55.0% | |
| TTTCGTCATGGTGCTCGCGT+AGG | + | chr5_4:64664311-64664330 | Msa0864330:intron | 55.0% | |
| !! | AAAGCCTGTGGTGGTGATGG+TGG | - | chr5_4:64664371-64664390 | None:intergenic | 55.0% |
| !! | AGAGAACTTGGTGGTGGTGG+TGG | + | chr5_4:64664491-64664510 | Msa0864330:CDS | 55.0% |
| GTGTTCTCCTCCAAGGTCTC+TGG | + | chr5_4:64665677-64665696 | Msa0864330:intron | 55.0% | |
| ATCATGGCTGCAGCAGCTGT+TGG | + | chr5_4:64666224-64666243 | Msa0864330:intron | 55.0% | |
| CAGGAGAAGCAAGCCTGTCA+AGG | - | chr5_4:64666283-64666302 | None:intergenic | 55.0% | |
| ! | TGACAGGCTTGCTTCTCCTG+AGG | + | chr5_4:64666283-64666302 | Msa0864330:intron | 55.0% |
| !! | TGTGGTGGTGATGGTGGTGG+AGG | - | chr5_4:64664365-64664384 | None:intergenic | 60.0% |
| TCCACCACCATCACCACCAC+AGG | + | chr5_4:64664364-64664383 | Msa0864330:CDS | 60.0% | |
| !! | GAACTTGGTGGTGGTGGTGG+TGG | + | chr5_4:64664494-64664513 | Msa0864330:CDS | 60.0% |
| CAGCTGCTGCAGCCATGATC+AGG | - | chr5_4:64666223-64666242 | None:intergenic | 60.0% | |
| TGGAGGTGGAGGTGGAGGTG+GGG | - | chr5_4:64664348-64664367 | None:intergenic | 65.0% | |
| GTGGAGGTGGAGGTGGAGGT+GGG | - | chr5_4:64664349-64664368 | None:intergenic | 65.0% | |
| !! | GATGGTGGTGGAGGTGGAGG+TGG | - | chr5_4:64664356-64664375 | None:intergenic | 65.0% |
| !! | GGTGATGGTGGTGGAGGTGG+AGG | - | chr5_4:64664359-64664378 | None:intergenic | 65.0% |
| !! | GGTGGTGATGGTGGTGGAGG+TGG | - | chr5_4:64664362-64664381 | None:intergenic | 65.0% |
| !! | GCCTGTGGTGGTGATGGTGG+TGG | - | chr5_4:64664368-64664387 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGGTGA+TGG | + | chr5_4:64664500-64664519 | Msa0864330:CDS | 65.0% |
| GGAGGTGGAGGTGGAGGTGG+GGG | - | chr5_4:64664347-64664366 | None:intergenic | 70.0% | |
| GGTGGAGGTGGAGGTGGAGG+TGG | - | chr5_4:64664350-64664369 | None:intergenic | 70.0% | |
| !! | GGTGGTGGAGGTGGAGGTGG+AGG | - | chr5_4:64664353-64664372 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 64663978 | 64666988 | 64663978 | ID=Msa0864330;Name=Msa0864330 |
| chr5_4 | mRNA | 64663978 | 64666988 | 64663978 | ID=Msa0864330-mRNA-1;Parent=Msa0864330;Name=Msa0864330-mRNA-1;_AED=0.36;_eAED=0.37;_QI=0|0|0|1|0|0|4|0|324 |
| chr5_4 | exon | 64663978 | 64664207 | 64663978 | ID=Msa0864330-mRNA-1:exon:20360;Parent=Msa0864330-mRNA-1 |
| chr5_4 | exon | 64664220 | 64664320 | 64664220 | ID=Msa0864330-mRNA-1:exon:20361;Parent=Msa0864330-mRNA-1 |
| chr5_4 | exon | 64664333 | 64664566 | 64664333 | ID=Msa0864330-mRNA-1:exon:20362;Parent=Msa0864330-mRNA-1 |
| chr5_4 | exon | 64666579 | 64666988 | 64666579 | ID=Msa0864330-mRNA-1:exon:20363;Parent=Msa0864330-mRNA-1 |
| chr5_4 | CDS | 64663978 | 64664207 | 64663978 | ID=Msa0864330-mRNA-1:cds;Parent=Msa0864330-mRNA-1 |
| chr5_4 | CDS | 64664220 | 64664320 | 64664220 | ID=Msa0864330-mRNA-1:cds;Parent=Msa0864330-mRNA-1 |
| chr5_4 | CDS | 64664333 | 64664566 | 64664333 | ID=Msa0864330-mRNA-1:cds;Parent=Msa0864330-mRNA-1 |
| chr5_4 | CDS | 64666579 | 64666988 | 64666579 | ID=Msa0864330-mRNA-1:cds;Parent=Msa0864330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
