Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864620 | AET00865.1 | 89.164 | 323 | 19 | 1 | 24 | 330 | 1 | 323 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864620 | sp|Q680K8|Y1576_ARATH | 41.916 | 334 | 155 | 8 | 24 | 329 | 1 | 323 | 4.94e-73 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864620 | G7K4U5 | 89.164 | 323 | 19 | 1 | 24 | 330 | 1 | 323 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0864620 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864620 | MtrunA17_Chr5g0447191 | 94.086 | 186 | 11 | 0 | 145 | 330 | 3 | 188 | 1.85e-125 | 357 |
| Msa0864620 | MtrunA17_Chr5g0447111 | 43.161 | 329 | 148 | 10 | 29 | 329 | 8 | 325 | 6.92e-78 | 241 |
| Msa0864620 | MtrunA17_Chr3g0103031 | 44.214 | 337 | 144 | 9 | 24 | 329 | 1 | 324 | 5.97e-76 | 236 |
| Msa0864620 | MtrunA17_Chr3g0124921 | 36.364 | 330 | 168 | 11 | 30 | 329 | 4 | 321 | 1.41e-53 | 178 |
| Msa0864620 | MtrunA17_Chr1g0159831 | 34.431 | 334 | 173 | 10 | 30 | 329 | 5 | 326 | 1.91e-53 | 178 |
| Msa0864620 | MtrunA17_Chr4g0029841 | 40.625 | 160 | 91 | 1 | 169 | 328 | 122 | 277 | 5.55e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864620 | AT1G55760.1 | 41.916 | 334 | 155 | 8 | 24 | 329 | 1 | 323 | 5.02e-74 | 231 |
| Msa0864620 | AT1G21780.2 | 36.923 | 325 | 171 | 7 | 30 | 329 | 5 | 320 | 9.76e-59 | 192 |
| Msa0864620 | AT1G21780.1 | 36.923 | 325 | 171 | 7 | 30 | 329 | 5 | 320 | 9.76e-59 | 192 |
Find 52 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCAATATCCAGTGGAATT+TGG | 0.245656 | 5_4:+65076889 | Msa0864620:CDS |
| GCGAAATTGATGCATTTAAC+TGG | 0.283346 | 5_4:+65076183 | Msa0864620:CDS |
| TTGGTAAAATACATGAAATC+TGG | 0.300649 | 5_4:+65076908 | Msa0864620:CDS |
| GATTTGCAGTCTTGAGATCT+AGG | 0.320253 | 5_4:-65076259 | None:intergenic |
| TTAAGATATCTAAATGGAAT+TGG | 0.336049 | 5_4:+65075316 | Msa0864620:CDS |
| TATGTTTGCACAAGATTCTA+AGG | 0.372257 | 5_4:+65076603 | Msa0864620:CDS |
| CCCACGGATTCCACTTTGAA+TGG | 0.379615 | 5_4:-65075216 | None:intergenic |
| GCATATAATTTGATAGTAAC+CGG | 0.381945 | 5_4:-65075596 | None:intergenic |
| TTTAGATATCTTAAAAGCTT+CGG | 0.401333 | 5_4:-65075307 | None:intergenic |
| GAATCATAGTTTCGAGCTAT+TGG | 0.408610 | 5_4:+65076726 | Msa0864620:CDS |
| ATGAATGCTTGACAAACTTC+AGG | 0.409567 | 5_4:-65076664 | None:intergenic |
| ATCTAGCTGTTCTTGCTGCC+CGG | 0.416939 | 5_4:+65076563 | Msa0864620:CDS |
| CGGAATTTGAAAGATGCAAT+TGG | 0.422404 | 5_4:-65075641 | None:intergenic |
| CCGTGGGTTACGTCGCTCAA+TGG | 0.441645 | 5_4:+65075232 | Msa0864620:CDS |
| GATAGTAACCGGACTGGAAA+GGG | 0.453381 | 5_4:-65075585 | None:intergenic |
| TGCAATTGGTGGATTATTTG+TGG | 0.455591 | 5_4:-65075627 | None:intergenic |
| GAGGGATTCCCTTTCCAGTC+CGG | 0.470003 | 5_4:+65075577 | Msa0864620:CDS |
| TGGTAAAATACATGAAATCT+GGG | 0.484453 | 5_4:+65076909 | Msa0864620:CDS |
| TTGGTTGCTGCTGAGAAATA+CGG | 0.484832 | 5_4:+65076745 | Msa0864620:CDS |
| TACAATCAAGCTCGTATCAT+CGG | 0.487102 | 5_4:+65076522 | Msa0864620:CDS |
| AATTTGAAAGATGCAATTGG+TGG | 0.524532 | 5_4:-65075638 | None:intergenic |
| GTTAAATGCATCAATTTCGC+TGG | 0.527183 | 5_4:-65076180 | None:intergenic |
| ACACAGGATGTTGTAACATC+AGG | 0.530431 | 5_4:-65076224 | None:intergenic |
| TTAACTAAGGAAGAAATTCA+CGG | 0.535488 | 5_4:-65076987 | None:intergenic |
| TTCTCTTAACATTCGAACAA+GGG | 0.536373 | 5_4:-65076482 | None:intergenic |
| TATATTCAAACATAGGTGAC+CGG | 0.536701 | 5_4:-65076582 | None:intergenic |
| TGATAGTAACCGGACTGGAA+AGG | 0.543693 | 5_4:-65075586 | None:intergenic |
| TCTTAAAAGCTTCGGATGTG+TGG | 0.550619 | 5_4:-65075299 | None:intergenic |
| CGAAATTGATGCATTTAACT+GGG | 0.554233 | 5_4:+65076184 | Msa0864620:CDS |
| AGCGCAACTAATCTTCAAGT+AGG | 0.555426 | 5_4:-65076869 | None:intergenic |
| TTTCTCTTAACATTCGAACA+AGG | 0.556453 | 5_4:-65076483 | None:intergenic |
| TCCATTCAAAGTGGAATCCG+TGG | 0.560598 | 5_4:+65075215 | Msa0864620:CDS |
| ATAGAGAAACTAACTCAACT+TGG | 0.561363 | 5_4:+65076446 | Msa0864620:CDS |
| GCAAACATATATTCAAACAT+AGG | 0.563128 | 5_4:-65076589 | None:intergenic |
| GATGATAGTGTACATGGCTA+AGG | 0.564046 | 5_4:+65074676 | None:intergenic |
| GGTGTTGGCTTTGACGACCC+TGG | 0.583619 | 5_4:+65074710 | Msa0864620:CDS |
| TAATTTGATAGTAACCGGAC+TGG | 0.592751 | 5_4:-65075591 | None:intergenic |
| GCGCAACTAATCTTCAAGTA+GGG | 0.602481 | 5_4:-65076868 | None:intergenic |
| TAGGAATTCAACTTCAACAC+AGG | 0.603549 | 5_4:-65076240 | None:intergenic |
| CCATTGAGCGACGTAACCCA+CGG | 0.604930 | 5_4:-65075232 | None:intergenic |
| CGGCGTTAATGATTTGAGAG+AGG | 0.605267 | 5_4:+65076765 | Msa0864620:CDS |
| GGATGTGTGGATAAAACTGT+GGG | 0.608090 | 5_4:-65075286 | None:intergenic |
| CCATTCAAAGTGGAATCCGT+GGG | 0.610952 | 5_4:+65075216 | Msa0864620:CDS |
| ATTGATAGAAATATGCAGCA+TGG | 0.618155 | 5_4:-65076843 | None:intergenic |
| AATTTGAGTAAGCTGAATTG+CGG | 0.634435 | 5_4:+65075180 | Msa0864620:CDS |
| AAAGGCACATATCATTCTCG+AGG | 0.636899 | 5_4:+65075558 | Msa0864620:intron |
| CGGATGTGTGGATAAAACTG+TGG | 0.637469 | 5_4:-65075287 | None:intergenic |
| ATATTCAAACATAGGTGACC+GGG | 0.654376 | 5_4:-65076581 | None:intergenic |
| AAGGCACATATCATTCTCGA+GGG | 0.667706 | 5_4:+65075559 | Msa0864620:intron |
| TAGTTGCGCTCAATATCCAG+TGG | 0.675124 | 5_4:+65076882 | Msa0864620:CDS |
| GCTTGATTGTAGCGTCTGTG+TGG | 0.704769 | 5_4:-65076510 | None:intergenic |
| GATGTGTGGATAAAACTGTG+GGG | 0.837656 | 5_4:-65075285 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTCAATTATATCATTA+AGG | + | chr5_4:65075776-65075795 | Msa0864620:intron | 10.0% |
| !!! | ATAATTTTAGTATTGATATT+AGG | + | chr5_4:65076367-65076386 | Msa0864620:intron | 10.0% |
| !! | TTATTTCAATTATATCATTA+AGG | + | chr5_4:65075776-65075795 | Msa0864620:intron | 10.0% |
| !!! | ATAATTTTAGTATTGATATT+AGG | + | chr5_4:65076367-65076386 | Msa0864620:intron | 10.0% |
| !!! | TGTTTAAATTTTTTGAATGA+AGG | + | chr5_4:65076423-65076442 | Msa0864620:intron | 15.0% |
| !!! | TGTTTAAATTTTTTGAATGA+AGG | + | chr5_4:65076423-65076442 | Msa0864620:intron | 15.0% |
| !! | TTATATGATTATTGTGATTG+AGG | - | chr5_4:65075149-65075168 | None:intergenic | 20.0% |
| !! | TTTAGATATCTTAAAAGCTT+CGG | - | chr5_4:65075310-65075329 | None:intergenic | 20.0% |
| !!! | AAGCTTTTAAGATATCTAAA+TGG | + | chr5_4:65075310-65075329 | Msa0864620:CDS | 20.0% |
| !! | TTAAGATATCTAAATGGAAT+TGG | + | chr5_4:65075316-65075335 | Msa0864620:CDS | 20.0% |
| !! | CTCTAATCATAAAAATCATA+TGG | + | chr5_4:65075415-65075434 | Msa0864620:intron | 20.0% |
| !! | TTACTTATAGAATTATGAGT+TGG | + | chr5_4:65075744-65075763 | Msa0864620:intron | 20.0% |
| !! | ATTATAGGTATATATGTTTG+TGG | - | chr5_4:65075920-65075939 | None:intergenic | 20.0% |
| !! | ATGCTTATATCTATATGAAT+AGG | + | chr5_4:65075980-65075999 | Msa0864620:intron | 20.0% |
| !! | TGCTTATATCTATATGAATA+GGG | + | chr5_4:65075981-65076000 | Msa0864620:intron | 20.0% |
| !!! | TTTCATAGACAAAGATTTTT+AGG | - | chr5_4:65076043-65076062 | None:intergenic | 20.0% |
| !! | ATTGAATAAAACAAGACATA+TGG | + | chr5_4:65076080-65076099 | Msa0864620:intron | 20.0% |
| !! | TTATATGATTATTGTGATTG+AGG | - | chr5_4:65075149-65075168 | None:intergenic | 20.0% |
| !! | TTTAGATATCTTAAAAGCTT+CGG | - | chr5_4:65075310-65075329 | None:intergenic | 20.0% |
| !!! | AAGCTTTTAAGATATCTAAA+TGG | + | chr5_4:65075310-65075329 | Msa0864620:CDS | 20.0% |
| !! | TTAAGATATCTAAATGGAAT+TGG | + | chr5_4:65075316-65075335 | Msa0864620:CDS | 20.0% |
| !! | CTCTAATCATAAAAATCATA+TGG | + | chr5_4:65075415-65075434 | Msa0864620:intron | 20.0% |
| !! | TTACTTATAGAATTATGAGT+TGG | + | chr5_4:65075744-65075763 | Msa0864620:intron | 20.0% |
| !! | ATTATAGGTATATATGTTTG+TGG | - | chr5_4:65075920-65075939 | None:intergenic | 20.0% |
| !! | ATGCTTATATCTATATGAAT+AGG | + | chr5_4:65075980-65075999 | Msa0864620:intron | 20.0% |
| !! | TGCTTATATCTATATGAATA+GGG | + | chr5_4:65075981-65076000 | Msa0864620:intron | 20.0% |
| !!! | TTTCATAGACAAAGATTTTT+AGG | - | chr5_4:65076043-65076062 | None:intergenic | 20.0% |
| !! | ATTGAATAAAACAAGACATA+TGG | + | chr5_4:65076080-65076099 | Msa0864620:intron | 20.0% |
| ! | ATGGCTAAGGATAATAAAAA+AGG | + | chr5_4:65074689-65074708 | Msa0864620:CDS | 25.0% |
| !! | AAGGATAATAAAAAAGGTGT+TGG | + | chr5_4:65074695-65074714 | Msa0864620:CDS | 25.0% |
| ! | TAATGTTAATGATGTTTCAG+TGG | + | chr5_4:65074809-65074828 | Msa0864620:intron | 25.0% |
| !!! | TGTATTTTAGAAGTTGTTAC+CGG | - | chr5_4:65074938-65074957 | None:intergenic | 25.0% |
| ! | TGTAATGATTATTGTGATTG+GGG | - | chr5_4:65075065-65075084 | None:intergenic | 25.0% |
| ! | CTGTAATGATTATTGTGATT+GGG | - | chr5_4:65075066-65075085 | None:intergenic | 25.0% |
| !! | GAGGAGGTATATATATATAA+GGG | - | chr5_4:65075130-65075149 | None:intergenic | 25.0% |
| !! | TGAGGAGGTATATATATATA+AGG | - | chr5_4:65075131-65075150 | None:intergenic | 25.0% |
| ! | ATCATAAAAATCATATGGTC+TGG | + | chr5_4:65075420-65075439 | Msa0864620:intron | 25.0% |
| !! | GCATATAATTTGATAGTAAC+CGG | - | chr5_4:65075599-65075618 | None:intergenic | 25.0% |
| ! | CTTTCAGAATGTAACAAATT+AGG | - | chr5_4:65075897-65075916 | None:intergenic | 25.0% |
| !!! | GTCTATGAAAATGTTGTTTT+TGG | + | chr5_4:65076053-65076072 | Msa0864620:intron | 25.0% |
| ! | AACAAGACATATGGTTAAAT+AGG | + | chr5_4:65076089-65076108 | Msa0864620:intron | 25.0% |
| ! | GCAAACATATATTCAAACAT+AGG | - | chr5_4:65076592-65076611 | None:intergenic | 25.0% |
| ! | ACAGAAAAAATATACTTGAG+AGG | + | chr5_4:65076818-65076837 | Msa0864620:CDS | 25.0% |
| ! | TTGGTAAAATACATGAAATC+TGG | + | chr5_4:65076908-65076927 | Msa0864620:CDS | 25.0% |
| ! | TGGTAAAATACATGAAATCT+GGG | + | chr5_4:65076909-65076928 | Msa0864620:CDS | 25.0% |
| ! | ATGGCTAAGGATAATAAAAA+AGG | + | chr5_4:65074689-65074708 | Msa0864620:CDS | 25.0% |
| !! | AAGGATAATAAAAAAGGTGT+TGG | + | chr5_4:65074695-65074714 | Msa0864620:CDS | 25.0% |
| ! | TAATGTTAATGATGTTTCAG+TGG | + | chr5_4:65074809-65074828 | Msa0864620:intron | 25.0% |
| !!! | TGTATTTTAGAAGTTGTTAC+CGG | - | chr5_4:65074938-65074957 | None:intergenic | 25.0% |
| ! | TGTAATGATTATTGTGATTG+GGG | - | chr5_4:65075065-65075084 | None:intergenic | 25.0% |
| ! | CTGTAATGATTATTGTGATT+GGG | - | chr5_4:65075066-65075085 | None:intergenic | 25.0% |
| !! | GAGGAGGTATATATATATAA+GGG | - | chr5_4:65075130-65075149 | None:intergenic | 25.0% |
| !! | TGAGGAGGTATATATATATA+AGG | - | chr5_4:65075131-65075150 | None:intergenic | 25.0% |
| ! | ATCATAAAAATCATATGGTC+TGG | + | chr5_4:65075420-65075439 | Msa0864620:intron | 25.0% |
| !! | GCATATAATTTGATAGTAAC+CGG | - | chr5_4:65075599-65075618 | None:intergenic | 25.0% |
| ! | CTTTCAGAATGTAACAAATT+AGG | - | chr5_4:65075897-65075916 | None:intergenic | 25.0% |
| !!! | GTCTATGAAAATGTTGTTTT+TGG | + | chr5_4:65076053-65076072 | Msa0864620:intron | 25.0% |
| ! | AACAAGACATATGGTTAAAT+AGG | + | chr5_4:65076089-65076108 | Msa0864620:intron | 25.0% |
| ! | GCAAACATATATTCAAACAT+AGG | - | chr5_4:65076592-65076611 | None:intergenic | 25.0% |
| ! | ACAGAAAAAATATACTTGAG+AGG | + | chr5_4:65076818-65076837 | Msa0864620:CDS | 25.0% |
| ! | TTGGTAAAATACATGAAATC+TGG | + | chr5_4:65076908-65076927 | Msa0864620:CDS | 25.0% |
| ! | TGGTAAAATACATGAAATCT+GGG | + | chr5_4:65076909-65076928 | Msa0864620:CDS | 25.0% |
| TAATATTAGACTTAGAGAGC+CGG | + | chr5_4:65074908-65074927 | Msa0864620:intron | 30.0% | |
| !! | GGTAACAACTTCTAAAATAC+AGG | + | chr5_4:65074937-65074956 | Msa0864620:intron | 30.0% |
| GCTGTAATGATTATTGTGAT+TGG | - | chr5_4:65075067-65075086 | None:intergenic | 30.0% | |
| AGCAAAAACTAAACACCATA+AGG | + | chr5_4:65075084-65075103 | Msa0864620:intron | 30.0% | |
| ! | ACTAAACACCATAAGGTTTT+CGG | + | chr5_4:65075091-65075110 | Msa0864620:intron | 30.0% |
| TATGATTATTGTGATTGAGG+AGG | - | chr5_4:65075146-65075165 | None:intergenic | 30.0% | |
| AATTTGAGTAAGCTGAATTG+CGG | + | chr5_4:65075180-65075199 | Msa0864620:CDS | 30.0% | |
| CCAACGTTATGATGAATAAT+CGG | - | chr5_4:65075449-65075468 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTTCCCAACACAA+AGG | + | chr5_4:65075540-65075559 | Msa0864620:intron | 30.0% |
| AATTTGAAAGATGCAATTGG+TGG | - | chr5_4:65075641-65075660 | None:intergenic | 30.0% | |
| CGAAATTGATGCATTTAACT+GGG | + | chr5_4:65076184-65076203 | Msa0864620:CDS | 30.0% | |
| TGATTAAATGCACGTACATT+TGG | - | chr5_4:65076284-65076303 | None:intergenic | 30.0% | |
| ATAGAGAAACTAACTCAACT+TGG | + | chr5_4:65076446-65076465 | Msa0864620:CDS | 30.0% | |
| TTCTCTTAACATTCGAACAA+GGG | - | chr5_4:65076485-65076504 | None:intergenic | 30.0% | |
| TTTCTCTTAACATTCGAACA+AGG | - | chr5_4:65076486-65076505 | None:intergenic | 30.0% | |
| TATATTCAAACATAGGTGAC+CGG | - | chr5_4:65076585-65076604 | None:intergenic | 30.0% | |
| TATGTTTGCACAAGATTCTA+AGG | + | chr5_4:65076603-65076622 | Msa0864620:CDS | 30.0% | |
| ATTGATAGAAATATGCAGCA+TGG | - | chr5_4:65076846-65076865 | None:intergenic | 30.0% | |
| ! | TGTATTTTACCAAATTCCAC+TGG | - | chr5_4:65076901-65076920 | None:intergenic | 30.0% |
| ! | TTTTCTTGCCTTCCTAAAAT+TGG | + | chr5_4:65076936-65076955 | Msa0864620:CDS | 30.0% |
| TAATATTAGACTTAGAGAGC+CGG | + | chr5_4:65074908-65074927 | Msa0864620:intron | 30.0% | |
| !! | GGTAACAACTTCTAAAATAC+AGG | + | chr5_4:65074937-65074956 | Msa0864620:intron | 30.0% |
| GCTGTAATGATTATTGTGAT+TGG | - | chr5_4:65075067-65075086 | None:intergenic | 30.0% | |
| AGCAAAAACTAAACACCATA+AGG | + | chr5_4:65075084-65075103 | Msa0864620:intron | 30.0% | |
| ! | ACTAAACACCATAAGGTTTT+CGG | + | chr5_4:65075091-65075110 | Msa0864620:intron | 30.0% |
| TATGATTATTGTGATTGAGG+AGG | - | chr5_4:65075146-65075165 | None:intergenic | 30.0% | |
| AATTTGAGTAAGCTGAATTG+CGG | + | chr5_4:65075180-65075199 | Msa0864620:CDS | 30.0% | |
| CCAACGTTATGATGAATAAT+CGG | - | chr5_4:65075449-65075468 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTTCCCAACACAA+AGG | + | chr5_4:65075540-65075559 | Msa0864620:intron | 30.0% |
| AATTTGAAAGATGCAATTGG+TGG | - | chr5_4:65075641-65075660 | None:intergenic | 30.0% | |
| CGAAATTGATGCATTTAACT+GGG | + | chr5_4:65076184-65076203 | Msa0864620:CDS | 30.0% | |
| TGATTAAATGCACGTACATT+TGG | - | chr5_4:65076284-65076303 | None:intergenic | 30.0% | |
| ATAGAGAAACTAACTCAACT+TGG | + | chr5_4:65076446-65076465 | Msa0864620:CDS | 30.0% | |
| TTCTCTTAACATTCGAACAA+GGG | - | chr5_4:65076485-65076504 | None:intergenic | 30.0% | |
| TTTCTCTTAACATTCGAACA+AGG | - | chr5_4:65076486-65076505 | None:intergenic | 30.0% | |
| TATATTCAAACATAGGTGAC+CGG | - | chr5_4:65076585-65076604 | None:intergenic | 30.0% | |
| TATGTTTGCACAAGATTCTA+AGG | + | chr5_4:65076603-65076622 | Msa0864620:CDS | 30.0% | |
| ATTGATAGAAATATGCAGCA+TGG | - | chr5_4:65076846-65076865 | None:intergenic | 30.0% | |
| ! | TGTATTTTACCAAATTCCAC+TGG | - | chr5_4:65076901-65076920 | None:intergenic | 30.0% |
| ! | TTTTCTTGCCTTCCTAAAAT+TGG | + | chr5_4:65076936-65076955 | Msa0864620:CDS | 30.0% |
| AGATGCAGAAGAGGAAAAAA+AGG | + | chr5_4:65074871-65074890 | Msa0864620:intron | 35.0% | |
| AATGATTATTGTGATTGGGG+AGG | - | chr5_4:65075062-65075081 | None:intergenic | 35.0% | |
| GTGAAAAACCGAAAACCTTA+TGG | - | chr5_4:65075102-65075121 | None:intergenic | 35.0% | |
| ! | GTTTTACTCTCCATTCAAAG+TGG | + | chr5_4:65075206-65075225 | Msa0864620:CDS | 35.0% |
| CCGATTATTCATCATAACGT+TGG | + | chr5_4:65075446-65075465 | Msa0864620:intron | 35.0% | |
| ATGATATGTGCCTTTGTGTT+GGG | - | chr5_4:65075553-65075572 | None:intergenic | 35.0% | |
| AATGATATGTGCCTTTGTGT+TGG | - | chr5_4:65075554-65075573 | None:intergenic | 35.0% | |
| ! | TAATTTGATAGTAACCGGAC+TGG | - | chr5_4:65075594-65075613 | None:intergenic | 35.0% |
| !! | TGCAATTGGTGGATTATTTG+TGG | - | chr5_4:65075630-65075649 | None:intergenic | 35.0% |
| CGGAATTTGAAAGATGCAAT+TGG | - | chr5_4:65075644-65075663 | None:intergenic | 35.0% | |
| TTCCGTATTCTTGACTCTAT+CGG | + | chr5_4:65075659-65075678 | Msa0864620:intron | 35.0% | |
| TTCCGATAGAGTCAAGAATA+CGG | - | chr5_4:65075664-65075683 | None:intergenic | 35.0% | |
| CTTGACTCTATCGGAAAAAA+TGG | + | chr5_4:65075668-65075687 | Msa0864620:intron | 35.0% | |
| TATGAATAGGGACTATGAGT+TGG | + | chr5_4:65075993-65076012 | Msa0864620:intron | 35.0% | |
| ! | CTTTTTCTTCTGCATCATTG+TGG | - | chr5_4:65076148-65076167 | None:intergenic | 35.0% |
| GTTAAATGCATCAATTTCGC+TGG | - | chr5_4:65076183-65076202 | None:intergenic | 35.0% | |
| GCGAAATTGATGCATTTAAC+TGG | + | chr5_4:65076183-65076202 | Msa0864620:CDS | 35.0% | |
| TAGGAATTCAACTTCAACAC+AGG | - | chr5_4:65076243-65076262 | None:intergenic | 35.0% | |
| TACAATCAAGCTCGTATCAT+CGG | + | chr5_4:65076522-65076541 | Msa0864620:CDS | 35.0% | |
| ATATTCAAACATAGGTGACC+GGG | - | chr5_4:65076584-65076603 | None:intergenic | 35.0% | |
| ATGAATGCTTGACAAACTTC+AGG | - | chr5_4:65076667-65076686 | None:intergenic | 35.0% | |
| GAATCATAGTTTCGAGCTAT+TGG | + | chr5_4:65076726-65076745 | Msa0864620:CDS | 35.0% | |
| !! | ATCATCTGCCAATTTTAGGA+AGG | - | chr5_4:65076947-65076966 | None:intergenic | 35.0% |
| ! | CATCATCATCTGCCAATTTT+AGG | - | chr5_4:65076951-65076970 | None:intergenic | 35.0% |
| AGATGCAGAAGAGGAAAAAA+AGG | + | chr5_4:65074871-65074890 | Msa0864620:intron | 35.0% | |
| AATGATTATTGTGATTGGGG+AGG | - | chr5_4:65075062-65075081 | None:intergenic | 35.0% | |
| GTGAAAAACCGAAAACCTTA+TGG | - | chr5_4:65075102-65075121 | None:intergenic | 35.0% | |
| ! | GTTTTACTCTCCATTCAAAG+TGG | + | chr5_4:65075206-65075225 | Msa0864620:CDS | 35.0% |
| CCGATTATTCATCATAACGT+TGG | + | chr5_4:65075446-65075465 | Msa0864620:intron | 35.0% | |
| ATGATATGTGCCTTTGTGTT+GGG | - | chr5_4:65075553-65075572 | None:intergenic | 35.0% | |
| AATGATATGTGCCTTTGTGT+TGG | - | chr5_4:65075554-65075573 | None:intergenic | 35.0% | |
| ! | TAATTTGATAGTAACCGGAC+TGG | - | chr5_4:65075594-65075613 | None:intergenic | 35.0% |
| !! | TGCAATTGGTGGATTATTTG+TGG | - | chr5_4:65075630-65075649 | None:intergenic | 35.0% |
| CGGAATTTGAAAGATGCAAT+TGG | - | chr5_4:65075644-65075663 | None:intergenic | 35.0% | |
| TTCCGTATTCTTGACTCTAT+CGG | + | chr5_4:65075659-65075678 | Msa0864620:intron | 35.0% | |
| TTCCGATAGAGTCAAGAATA+CGG | - | chr5_4:65075664-65075683 | None:intergenic | 35.0% | |
| CTTGACTCTATCGGAAAAAA+TGG | + | chr5_4:65075668-65075687 | Msa0864620:intron | 35.0% | |
| TATGAATAGGGACTATGAGT+TGG | + | chr5_4:65075993-65076012 | Msa0864620:intron | 35.0% | |
| ! | CTTTTTCTTCTGCATCATTG+TGG | - | chr5_4:65076148-65076167 | None:intergenic | 35.0% |
| GTTAAATGCATCAATTTCGC+TGG | - | chr5_4:65076183-65076202 | None:intergenic | 35.0% | |
| GCGAAATTGATGCATTTAAC+TGG | + | chr5_4:65076183-65076202 | Msa0864620:CDS | 35.0% | |
| TAGGAATTCAACTTCAACAC+AGG | - | chr5_4:65076243-65076262 | None:intergenic | 35.0% | |
| TACAATCAAGCTCGTATCAT+CGG | + | chr5_4:65076522-65076541 | Msa0864620:CDS | 35.0% | |
| ATATTCAAACATAGGTGACC+GGG | - | chr5_4:65076584-65076603 | None:intergenic | 35.0% | |
| ATGAATGCTTGACAAACTTC+AGG | - | chr5_4:65076667-65076686 | None:intergenic | 35.0% | |
| GAATCATAGTTTCGAGCTAT+TGG | + | chr5_4:65076726-65076745 | Msa0864620:CDS | 35.0% | |
| !! | ATCATCTGCCAATTTTAGGA+AGG | - | chr5_4:65076947-65076966 | None:intergenic | 35.0% |
| ! | CATCATCATCTGCCAATTTT+AGG | - | chr5_4:65076951-65076970 | None:intergenic | 35.0% |
| CAGGCAAACAGTAAGTTTAG+TGG | + | chr5_4:65074786-65074805 | Msa0864620:intron | 40.0% | |
| TCAGTGGAGATTGAAGTTCA+AGG | + | chr5_4:65074825-65074844 | Msa0864620:intron | 40.0% | |
| GAGTTGTTTAGATGCAGAAG+AGG | + | chr5_4:65074862-65074881 | Msa0864620:intron | 40.0% | |
| !! | AGAAGTTGTTACCGGTTTAC+CGG | - | chr5_4:65074930-65074949 | None:intergenic | 40.0% |
| !! | CTTCTAAAATACAGGTGACG+TGG | + | chr5_4:65074945-65074964 | Msa0864620:intron | 40.0% |
| GATGTGTGGATAAAACTGTG+GGG | - | chr5_4:65075288-65075307 | None:intergenic | 40.0% | |
| GGATGTGTGGATAAAACTGT+GGG | - | chr5_4:65075289-65075308 | None:intergenic | 40.0% | |
| TCTTAAAAGCTTCGGATGTG+TGG | - | chr5_4:65075302-65075321 | None:intergenic | 40.0% | |
| ! | AAAGGCACATATCATTCTCG+AGG | + | chr5_4:65075558-65075577 | Msa0864620:intron | 40.0% |
| AAGGCACATATCATTCTCGA+GGG | + | chr5_4:65075559-65075578 | Msa0864620:intron | 40.0% | |
| TCTGCATCATTGTGGAAAAG+AGG | - | chr5_4:65076140-65076159 | None:intergenic | 40.0% | |
| ACACAGGATGTTGTAACATC+AGG | - | chr5_4:65076227-65076246 | None:intergenic | 40.0% | |
| GATTTGCAGTCTTGAGATCT+AGG | - | chr5_4:65076262-65076281 | None:intergenic | 40.0% | |
| TTGGTTGCTGCTGAGAAATA+CGG | + | chr5_4:65076745-65076764 | Msa0864620:CDS | 40.0% | |
| GCGCAACTAATCTTCAAGTA+GGG | - | chr5_4:65076871-65076890 | None:intergenic | 40.0% | |
| AGCGCAACTAATCTTCAAGT+AGG | - | chr5_4:65076872-65076891 | None:intergenic | 40.0% | |
| GCTCAATATCCAGTGGAATT+TGG | + | chr5_4:65076889-65076908 | Msa0864620:CDS | 40.0% | |
| CAGGCAAACAGTAAGTTTAG+TGG | + | chr5_4:65074786-65074805 | Msa0864620:intron | 40.0% | |
| TCAGTGGAGATTGAAGTTCA+AGG | + | chr5_4:65074825-65074844 | Msa0864620:intron | 40.0% | |
| GAGTTGTTTAGATGCAGAAG+AGG | + | chr5_4:65074862-65074881 | Msa0864620:intron | 40.0% | |
| !! | AGAAGTTGTTACCGGTTTAC+CGG | - | chr5_4:65074930-65074949 | None:intergenic | 40.0% |
| !! | CTTCTAAAATACAGGTGACG+TGG | + | chr5_4:65074945-65074964 | Msa0864620:intron | 40.0% |
| GATGTGTGGATAAAACTGTG+GGG | - | chr5_4:65075288-65075307 | None:intergenic | 40.0% | |
| GGATGTGTGGATAAAACTGT+GGG | - | chr5_4:65075289-65075308 | None:intergenic | 40.0% | |
| TCTTAAAAGCTTCGGATGTG+TGG | - | chr5_4:65075302-65075321 | None:intergenic | 40.0% | |
| ! | AAAGGCACATATCATTCTCG+AGG | + | chr5_4:65075558-65075577 | Msa0864620:intron | 40.0% |
| AAGGCACATATCATTCTCGA+GGG | + | chr5_4:65075559-65075578 | Msa0864620:intron | 40.0% | |
| TCTGCATCATTGTGGAAAAG+AGG | - | chr5_4:65076140-65076159 | None:intergenic | 40.0% | |
| ACACAGGATGTTGTAACATC+AGG | - | chr5_4:65076227-65076246 | None:intergenic | 40.0% | |
| GATTTGCAGTCTTGAGATCT+AGG | - | chr5_4:65076262-65076281 | None:intergenic | 40.0% | |
| TTGGTTGCTGCTGAGAAATA+CGG | + | chr5_4:65076745-65076764 | Msa0864620:CDS | 40.0% | |
| GCGCAACTAATCTTCAAGTA+GGG | - | chr5_4:65076871-65076890 | None:intergenic | 40.0% | |
| AGCGCAACTAATCTTCAAGT+AGG | - | chr5_4:65076872-65076891 | None:intergenic | 40.0% | |
| GCTCAATATCCAGTGGAATT+TGG | + | chr5_4:65076889-65076908 | Msa0864620:CDS | 40.0% | |
| TCCATTCAAAGTGGAATCCG+TGG | + | chr5_4:65075215-65075234 | Msa0864620:CDS | 45.0% | |
| CCATTCAAAGTGGAATCCGT+GGG | + | chr5_4:65075216-65075235 | Msa0864620:CDS | 45.0% | |
| CGGATGTGTGGATAAAACTG+TGG | - | chr5_4:65075290-65075309 | None:intergenic | 45.0% | |
| ! | GATAGTAACCGGACTGGAAA+GGG | - | chr5_4:65075588-65075607 | None:intergenic | 45.0% |
| ! | TGATAGTAACCGGACTGGAA+AGG | - | chr5_4:65075589-65075608 | None:intergenic | 45.0% |
| TGGAATAACCTTCGCAGAGA+CGG | + | chr5_4:65075688-65075707 | Msa0864620:intron | 45.0% | |
| !!! | TTTTTTACCCGTCTCTGCGA+AGG | - | chr5_4:65075699-65075718 | None:intergenic | 45.0% |
| CGGCGTTAATGATTTGAGAG+AGG | + | chr5_4:65076765-65076784 | Msa0864620:CDS | 45.0% | |
| TAGTTGCGCTCAATATCCAG+TGG | + | chr5_4:65076882-65076901 | Msa0864620:CDS | 45.0% | |
| TCCATTCAAAGTGGAATCCG+TGG | + | chr5_4:65075215-65075234 | Msa0864620:CDS | 45.0% | |
| CCATTCAAAGTGGAATCCGT+GGG | + | chr5_4:65075216-65075235 | Msa0864620:CDS | 45.0% | |
| CGGATGTGTGGATAAAACTG+TGG | - | chr5_4:65075290-65075309 | None:intergenic | 45.0% | |
| ! | GATAGTAACCGGACTGGAAA+GGG | - | chr5_4:65075588-65075607 | None:intergenic | 45.0% |
| ! | TGATAGTAACCGGACTGGAA+AGG | - | chr5_4:65075589-65075608 | None:intergenic | 45.0% |
| TGGAATAACCTTCGCAGAGA+CGG | + | chr5_4:65075688-65075707 | Msa0864620:intron | 45.0% | |
| !!! | TTTTTTACCCGTCTCTGCGA+AGG | - | chr5_4:65075699-65075718 | None:intergenic | 45.0% |
| CGGCGTTAATGATTTGAGAG+AGG | + | chr5_4:65076765-65076784 | Msa0864620:CDS | 45.0% | |
| TAGTTGCGCTCAATATCCAG+TGG | + | chr5_4:65076882-65076901 | Msa0864620:CDS | 45.0% | |
| !!! | TTTATTTTGATTAAAATTAT+AGG | - | chr5_4:65075935-65075954 | None:intergenic | 5.0% |
| !!! | TTTATTTTGATTAAAATTAT+AGG | - | chr5_4:65075935-65075954 | None:intergenic | 5.0% |
| ! | ACCCTGGTAAGGTTTTCTCG+TGG | + | chr5_4:65074726-65074745 | Msa0864620:intron | 50.0% |
| CCCACGAGAAAACCTTACCA+GGG | - | chr5_4:65074730-65074749 | None:intergenic | 50.0% | |
| ! | CCCTGGTAAGGTTTTCTCGT+GGG | + | chr5_4:65074727-65074746 | Msa0864620:intron | 50.0% |
| TCCCACGAGAAAACCTTACC+AGG | - | chr5_4:65074731-65074750 | None:intergenic | 50.0% | |
| !! | AGGTTTTCTCGTGGGAGTGT+TGG | + | chr5_4:65074735-65074754 | Msa0864620:intron | 50.0% |
| !!! | TTTTCTCGTGGGAGTGTTGG+TGG | + | chr5_4:65074738-65074757 | Msa0864620:intron | 50.0% |
| !! | GAGTGTTGGTGGTAGGTTCT+AGG | + | chr5_4:65074749-65074768 | Msa0864620:intron | 50.0% |
| GACTTAGAGAGCCGGTAAAC+CGG | + | chr5_4:65074916-65074935 | Msa0864620:intron | 50.0% | |
| TAGACACCCGCCCACTAATT+GGG | - | chr5_4:65074971-65074990 | None:intergenic | 50.0% | |
| TTAGACACCCGCCCACTAAT+TGG | - | chr5_4:65074972-65074991 | None:intergenic | 50.0% | |
| ! | ATTAGTGGGCGGGTGTCTAA+AGG | + | chr5_4:65074972-65074991 | Msa0864620:intron | 50.0% |
| CCCACGGATTCCACTTTGAA+TGG | - | chr5_4:65075219-65075238 | None:intergenic | 50.0% | |
| GGAATAACCTTCGCAGAGAC+GGG | + | chr5_4:65075689-65075708 | Msa0864620:intron | 50.0% | |
| GCTTGATTGTAGCGTCTGTG+TGG | - | chr5_4:65076513-65076532 | None:intergenic | 50.0% | |
| ATCTAGCTGTTCTTGCTGCC+CGG | + | chr5_4:65076563-65076582 | Msa0864620:CDS | 50.0% | |
| ! | ACCCTGGTAAGGTTTTCTCG+TGG | + | chr5_4:65074726-65074745 | Msa0864620:intron | 50.0% |
| CCCACGAGAAAACCTTACCA+GGG | - | chr5_4:65074730-65074749 | None:intergenic | 50.0% | |
| ! | CCCTGGTAAGGTTTTCTCGT+GGG | + | chr5_4:65074727-65074746 | Msa0864620:intron | 50.0% |
| TCCCACGAGAAAACCTTACC+AGG | - | chr5_4:65074731-65074750 | None:intergenic | 50.0% | |
| !! | AGGTTTTCTCGTGGGAGTGT+TGG | + | chr5_4:65074735-65074754 | Msa0864620:intron | 50.0% |
| !!! | TTTTCTCGTGGGAGTGTTGG+TGG | + | chr5_4:65074738-65074757 | Msa0864620:intron | 50.0% |
| !! | GAGTGTTGGTGGTAGGTTCT+AGG | + | chr5_4:65074749-65074768 | Msa0864620:intron | 50.0% |
| GACTTAGAGAGCCGGTAAAC+CGG | + | chr5_4:65074916-65074935 | Msa0864620:intron | 50.0% | |
| TAGACACCCGCCCACTAATT+GGG | - | chr5_4:65074971-65074990 | None:intergenic | 50.0% | |
| TTAGACACCCGCCCACTAAT+TGG | - | chr5_4:65074972-65074991 | None:intergenic | 50.0% | |
| ! | ATTAGTGGGCGGGTGTCTAA+AGG | + | chr5_4:65074972-65074991 | Msa0864620:intron | 50.0% |
| CCCACGGATTCCACTTTGAA+TGG | - | chr5_4:65075219-65075238 | None:intergenic | 50.0% | |
| GGAATAACCTTCGCAGAGAC+GGG | + | chr5_4:65075689-65075708 | Msa0864620:intron | 50.0% | |
| GCTTGATTGTAGCGTCTGTG+TGG | - | chr5_4:65076513-65076532 | None:intergenic | 50.0% | |
| ATCTAGCTGTTCTTGCTGCC+CGG | + | chr5_4:65076563-65076582 | Msa0864620:CDS | 50.0% | |
| !! | TGGCTTTGACGACCCTGGTA+AGG | + | chr5_4:65074715-65074734 | Msa0864620:intron | 55.0% |
| !! | GTGGTAGGTTCTAGGCTGTG+TGG | + | chr5_4:65074757-65074776 | Msa0864620:intron | 55.0% |
| !! | GGTTCTAGGCTGTGTGGTCA+TGG | + | chr5_4:65074763-65074782 | Msa0864620:intron | 55.0% |
| AGGTGACGTGGCCCAATTAG+TGG | + | chr5_4:65074957-65074976 | Msa0864620:intron | 55.0% | |
| GGTGACGTGGCCCAATTAGT+GGG | + | chr5_4:65074958-65074977 | Msa0864620:intron | 55.0% | |
| CCATTGAGCGACGTAACCCA+CGG | - | chr5_4:65075235-65075254 | None:intergenic | 55.0% | |
| GAGGGATTCCCTTTCCAGTC+CGG | + | chr5_4:65075577-65075596 | Msa0864620:CDS | 55.0% | |
| !! | TGGCTTTGACGACCCTGGTA+AGG | + | chr5_4:65074715-65074734 | Msa0864620:intron | 55.0% |
| !! | GTGGTAGGTTCTAGGCTGTG+TGG | + | chr5_4:65074757-65074776 | Msa0864620:intron | 55.0% |
| !! | GGTTCTAGGCTGTGTGGTCA+TGG | + | chr5_4:65074763-65074782 | Msa0864620:intron | 55.0% |
| AGGTGACGTGGCCCAATTAG+TGG | + | chr5_4:65074957-65074976 | Msa0864620:intron | 55.0% | |
| GGTGACGTGGCCCAATTAGT+GGG | + | chr5_4:65074958-65074977 | Msa0864620:intron | 55.0% | |
| CCATTGAGCGACGTAACCCA+CGG | - | chr5_4:65075235-65075254 | None:intergenic | 55.0% | |
| GAGGGATTCCCTTTCCAGTC+CGG | + | chr5_4:65075577-65075596 | Msa0864620:CDS | 55.0% | |
| !! | GGTGTTGGCTTTGACGACCC+TGG | + | chr5_4:65074710-65074729 | Msa0864620:CDS | 60.0% |
| !! | CTCGTGGGAGTGTTGGTGGT+AGG | + | chr5_4:65074742-65074761 | Msa0864620:intron | 60.0% |
| CTAGGCTGTGTGGTCATGGC+AGG | + | chr5_4:65074767-65074786 | Msa0864620:intron | 60.0% | |
| GACGTGGCCCAATTAGTGGG+CGG | + | chr5_4:65074961-65074980 | Msa0864620:intron | 60.0% | |
| ! | ACGTGGCCCAATTAGTGGGC+GGG | + | chr5_4:65074962-65074981 | Msa0864620:intron | 60.0% |
| CGGGTGTCTAAAGGCGAGTG+TGG | + | chr5_4:65074981-65075000 | Msa0864620:intron | 60.0% | |
| ! | CCGTGGGTTACGTCGCTCAA+TGG | + | chr5_4:65075232-65075251 | Msa0864620:CDS | 60.0% |
| !! | GGTGTTGGCTTTGACGACCC+TGG | + | chr5_4:65074710-65074729 | Msa0864620:CDS | 60.0% |
| !! | CTCGTGGGAGTGTTGGTGGT+AGG | + | chr5_4:65074742-65074761 | Msa0864620:intron | 60.0% |
| CTAGGCTGTGTGGTCATGGC+AGG | + | chr5_4:65074767-65074786 | Msa0864620:intron | 60.0% | |
| GACGTGGCCCAATTAGTGGG+CGG | + | chr5_4:65074961-65074980 | Msa0864620:intron | 60.0% | |
| ! | ACGTGGCCCAATTAGTGGGC+GGG | + | chr5_4:65074962-65074981 | Msa0864620:intron | 60.0% |
| CGGGTGTCTAAAGGCGAGTG+TGG | + | chr5_4:65074981-65075000 | Msa0864620:intron | 60.0% | |
| ! | CCGTGGGTTACGTCGCTCAA+TGG | + | chr5_4:65075232-65075251 | Msa0864620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65074689 | 65077005 | 65074689 | ID=Msa0864620;Name=Msa0864620 |
| chr5_4 | mRNA | 65074689 | 65077005 | 65074689 | ID=Msa0864620-mRNA-1;Parent=Msa0864620;Name=Msa0864620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|0.8|0.25|0.6|5|0|330 |
| chr5_4 | exon | 65074689 | 65074731 | 65074689 | ID=Msa0864620-mRNA-1:exon:20486;Parent=Msa0864620-mRNA-1 |
| chr5_4 | exon | 65075178 | 65075337 | 65075178 | ID=Msa0864620-mRNA-1:exon:20487;Parent=Msa0864620-mRNA-1 |
| chr5_4 | exon | 65075562 | 65075662 | 65075562 | ID=Msa0864620-mRNA-1:exon:20488;Parent=Msa0864620-mRNA-1 |
| chr5_4 | exon | 65076159 | 65076286 | 65076159 | ID=Msa0864620-mRNA-1:exon:20489;Parent=Msa0864620-mRNA-1 |
| chr5_4 | exon | 65076445 | 65077005 | 65076445 | ID=Msa0864620-mRNA-1:exon:20490;Parent=Msa0864620-mRNA-1 |
| chr5_4 | CDS | 65074689 | 65074731 | 65074689 | ID=Msa0864620-mRNA-1:cds;Parent=Msa0864620-mRNA-1 |
| chr5_4 | CDS | 65075178 | 65075337 | 65075178 | ID=Msa0864620-mRNA-1:cds;Parent=Msa0864620-mRNA-1 |
| chr5_4 | CDS | 65075562 | 65075662 | 65075562 | ID=Msa0864620-mRNA-1:cds;Parent=Msa0864620-mRNA-1 |
| chr5_4 | CDS | 65076159 | 65076286 | 65076159 | ID=Msa0864620-mRNA-1:cds;Parent=Msa0864620-mRNA-1 |
| chr5_4 | CDS | 65076445 | 65077005 | 65076445 | ID=Msa0864620-mRNA-1:cds;Parent=Msa0864620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
