Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864980 | XP_003618007.1 | 77.015 | 583 | 69 | 4 | 7 | 588 | 14 | 532 | 0.0 | 837 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864980 | G7K4Z3 | 77.015 | 583 | 69 | 4 | 7 | 588 | 14 | 532 | 0.0 | 837 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0864980 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864980 | MtrunA17_Chr5g0447971 | 77.015 | 583 | 69 | 4 | 7 | 588 | 14 | 532 | 0.0 | 837 |
| Msa0864980 | MtrunA17_Chr3g0086321 | 68.670 | 233 | 69 | 1 | 360 | 588 | 161 | 393 | 1.92e-101 | 313 |
| Msa0864980 | MtrunA17_Chr3g0086321 | 76.613 | 124 | 25 | 1 | 65 | 188 | 80 | 199 | 2.57e-56 | 194 |
| Msa0864980 | MtrunA17_Chr3g0086321 | 32.340 | 235 | 111 | 6 | 296 | 490 | 161 | 387 | 4.11e-16 | 80.5 |
| Msa0864980 | MtrunA17_Chr3g0086321 | 30.120 | 166 | 92 | 3 | 417 | 580 | 82 | 225 | 2.54e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864980 | AT5G61190.10 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 8.28e-12 | 68.9 |
| Msa0864980 | AT5G61190.1 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 9.61e-12 | 68.6 |
| Msa0864980 | AT5G61190.4 | 26.702 | 191 | 109 | 5 | 393 | 583 | 240 | 399 | 1.01e-11 | 68.6 |
| Msa0864980 | AT5G61190.2 | 26.702 | 191 | 109 | 5 | 393 | 583 | 240 | 399 | 1.01e-11 | 68.6 |
| Msa0864980 | AT5G61190.7 | 27.128 | 188 | 106 | 5 | 393 | 580 | 146 | 302 | 1.07e-11 | 68.6 |
| Msa0864980 | AT5G61190.3 | 27.128 | 188 | 106 | 5 | 393 | 580 | 146 | 302 | 1.07e-11 | 68.6 |
| Msa0864980 | AT5G61190.5 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 1.24e-11 | 68.6 |
| Msa0864980 | AT5G61190.6 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 1.27e-11 | 68.2 |
| Msa0864980 | AT5G61190.11 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 1.28e-11 | 68.2 |
| Msa0864980 | AT5G61190.9 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 1.38e-11 | 68.2 |
| Msa0864980 | AT5G61190.8 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 1.43e-11 | 68.2 |
Find 131 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 5_4:+65561161 | Msa0864980:CDS |
| CTTCTTAGGCTCTGATTGTT+TGG | 0.209399 | 5_4:-65561573 | None:intergenic |
| CTGTTTCATTGTTTGTGTTT+TGG | 0.270659 | 5_4:+65564171 | Msa0864980:three_prime_UTR |
| TTCGGCTAAAGGACCAATTA+AGG | 0.271027 | 5_4:-65561939 | None:intergenic |
| ACAAAATCAACCTGCTTCTT+AGG | 0.280074 | 5_4:-65561587 | None:intergenic |
| TTCAATGCTTCTAATATTGC+AGG | 0.282177 | 5_4:+65560902 | None:intergenic |
| TGCGCAGAAGGCAAACTTGC+AGG | 0.288386 | 5_4:-65561044 | None:intergenic |
| TTCTTAGGCTCTGATTGTTT+GGG | 0.304970 | 5_4:-65561572 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+TGG | 0.305574 | 5_4:-65561861 | None:intergenic |
| ACAGAACCAACCTGTTTCTT+AGG | 0.306868 | 5_4:-65561875 | None:intergenic |
| ATACTATCAACCTGTTTCTT+AGG | 0.309233 | 5_4:-65561425 | None:intergenic |
| CCGCTGCCAACACCGACTTT+TGG | 0.320862 | 5_4:-65563747 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_4:-65561683 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_4:-65561971 | None:intergenic |
| ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5_4:-65562067 | None:intergenic |
| ATCCAAGGACAAACATTAAT+TGG | 0.324738 | 5_4:+65561638 | Msa0864980:CDS |
| GTTTCTCTAATACAAGTAAA+AGG | 0.332058 | 5_4:-65564142 | None:intergenic |
| CTTCTGCACGTAATGGTTCC+TGG | 0.342961 | 5_4:+65561144 | Msa0864980:CDS |
| ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | 5_4:+65563786 | Msa0864980:CDS |
| TCACCATAGCAGCATGATTA+TGG | 0.346041 | 5_4:-65563986 | None:intergenic |
| ACGGAATCAACCTGTTTCTT+AGG | 0.353929 | 5_4:-65561491 | None:intergenic |
| CGTGCAGAAGGCAAACTTGC+AGG | 0.359812 | 5_4:-65561131 | None:intergenic |
| GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 5_4:-65563706 | None:intergenic |
| ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | 5_4:+65562022 | Msa0864980:CDS |
| TTGTAAACCTCAATGCATAA+TGG | 0.365561 | 5_4:-65564215 | None:intergenic |
| GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 5_4:+65561076 | Msa0864980:CDS |
| ATCCAAGGACAAGCATTAAT+TGG | 0.369738 | 5_4:+65561830 | Msa0864980:CDS |
| ATCCAATCACAAGCCTTAAT+TGG | 0.371873 | 5_4:+65561926 | Msa0864980:CDS |
| GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 5_4:+65562072 | Msa0864980:CDS |
| ATCCAAGGTCAAGCGTTAAT+TGG | 0.378876 | 5_4:+65561380 | Msa0864980:CDS |
| CGCTTGAGTTCGGCAATAGA+TGG | 0.381144 | 5_4:-65563567 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.383641 | 5_4:-65561758 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5_4:-65561477 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5_4:-65561957 | None:intergenic |
| TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5_4:-65562053 | None:intergenic |
| GGCTCTGATTGTTCGGCTAC+AGG | 0.393801 | 5_4:-65561470 | None:intergenic |
| TGAACAGAAGGCAAACTTGC+AGG | 0.394062 | 5_4:-65560957 | None:intergenic |
| GGCTCTGATTGTTCGGCTAT+AGG | 0.407509 | 5_4:-65562046 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 5_4:+65561415 | Msa0864980:CDS |
| AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 5_4:-65561211 | None:intergenic |
| TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 5_4:-65561216 | None:intergenic |
| GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 5_4:-65561162 | None:intergenic |
| GGCTCTGATTGTTCGGCTAA+AGG | 0.413854 | 5_4:-65561950 | None:intergenic |
| GACTGCAAAATTACAAGCAT+TGG | 0.415529 | 5_4:-65560990 | None:intergenic |
| GACCAATTAATGTTTGTCCT+TGG | 0.416054 | 5_4:-65561640 | None:intergenic |
| ACTACCACCACCACCGCAAT+AGG | 0.416616 | 5_4:+65563774 | Msa0864980:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.424333 | 5_4:+65561865 | Msa0864980:CDS |
| TTCGCATGAGATGCAATTGT+AGG | 0.424733 | 5_4:-65561335 | None:intergenic |
| GACCAATTAAGGCTTGTGAT+TGG | 0.426163 | 5_4:-65561928 | None:intergenic |
| TTTCTTAGGCTCTGATTGCC+CGG | 0.426220 | 5_4:-65561669 | None:intergenic |
| GGCTCTGATTGCCCGGCTAC+AGG | 0.428818 | 5_4:-65561662 | None:intergenic |
| GGTGATTATTTAAATTTGCC+TGG | 0.434831 | 5_4:-65563956 | None:intergenic |
| TTGCAGGCGCTGCTGAAGTC+TGG | 0.435502 | 5_4:-65561115 | None:intergenic |
| GCAATCAGAGCCTAAGAAAC+AGG | 0.437003 | 5_4:+65561673 | Msa0864980:CDS |
| ACATTAATTGGTCCTGTAGC+CGG | 0.438110 | 5_4:+65561650 | Msa0864980:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5_4:+65561481 | Msa0864980:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5_4:+65561961 | Msa0864980:CDS |
| ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5_4:+65562057 | Msa0864980:CDS |
| GACCAATTAACGCTTGTCCT+TGG | 0.442236 | 5_4:-65562024 | None:intergenic |
| GGCTCTGATTGCTCGCCTAC+AGG | 0.444213 | 5_4:-65561404 | None:intergenic |
| AATGCCATCATTAGACTTCA+AGG | 0.445716 | 5_4:-65563541 | None:intergenic |
| GACCAATTAATGCTTGTCCT+TGG | 0.452219 | 5_4:-65561832 | None:intergenic |
| ATCCATGGACAAGCGTTAAT+CGG | 0.454098 | 5_4:+65561734 | Msa0864980:CDS |
| ACATATAACAAACATGTTGC+TGG | 0.455549 | 5_4:+65562133 | Msa0864980:CDS |
| TCCTTCAATACTTCTTGTGT+CGG | 0.457555 | 5_4:-65561528 | None:intergenic |
| AGCTACACTGCACACTTGTC+CGG | 0.457647 | 5_4:+65563687 | Msa0864980:CDS |
| ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 5_4:-65563577 | None:intergenic |
| ACCGACACAAGAAGTATTGA+AGG | 0.474071 | 5_4:+65561527 | Msa0864980:CDS |
| CTTCTAATATTGCCGGCTGT+TGG | 0.475497 | 5_4:+65561083 | Msa0864980:CDS |
| CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 5_4:+65560909 | Msa0864980:CDS |
| GCCGGCAATATTAGAAGCAT+TGG | 0.481716 | 5_4:-65561077 | None:intergenic |
| CATTAATTGGTCCTGTAGCC+GGG | 0.486089 | 5_4:+65561651 | Msa0864980:CDS |
| TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 5_4:-65561206 | None:intergenic |
| CCGCAATAGGCACTTCAATT+GGG | 0.497753 | 5_4:+65563787 | Msa0864980:CDS |
| TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | 5_4:-65563772 | None:intergenic |
| AGTTTGCCTTCTGCACGTAA+TGG | 0.498221 | 5_4:+65561137 | Msa0864980:CDS |
| CTTGCAAAATTCACACCATA+CGG | 0.505040 | 5_4:-65563643 | None:intergenic |
| GACCAATTAACGCTTGACCT+TGG | 0.509177 | 5_4:-65561382 | None:intergenic |
| AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 5_4:+65560963 | Msa0864980:CDS |
| CATATAACAAACATGTTGCT+GGG | 0.516681 | 5_4:+65562134 | Msa0864980:CDS |
| AGGCACTTCAATTGGGCCAC+AGG | 0.517728 | 5_4:+65563794 | Msa0864980:CDS |
| TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | 5_4:-65563781 | None:intergenic |
| CAGCATGATTATGGTCACTA+AGG | 0.520547 | 5_4:-65563977 | None:intergenic |
| TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 5_4:+65563992 | Msa0864980:CDS |
| ATAACTTCCATTATGCATTG+AGG | 0.534436 | 5_4:+65564208 | Msa0864980:three_prime_UTR |
| GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 5_4:-65561056 | None:intergenic |
| GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 5_4:+65563996 | Msa0864980:CDS |
| CCAAAAGTCGGTGTTGGCAG+CGG | 0.541495 | 5_4:+65563747 | Msa0864980:CDS |
| ACAATCAGAGCCTAAGAAGC+AGG | 0.543600 | 5_4:+65561577 | Msa0864980:CDS |
| AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 5_4:+65563611 | Msa0864980:CDS |
| TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 5_4:+65562153 | Msa0864980:CDS |
| AAACGTAAAGCTGTGGAAAG+AGG | 0.559914 | 5_4:+65563879 | Msa0864980:CDS |
| ATGCAGTATGTCATTGCTAT+CGG | 0.563604 | 5_4:+65564090 | Msa0864980:three_prime_UTR |
| GTCATTGTGTCATCTAGACT+TGG | 0.565209 | 5_4:+65564045 | Msa0864980:three_prime_UTR |
| AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 5_4:+65564008 | Msa0864980:CDS |
| GTCGGTTTGTACATTCTCAA+CGG | 0.567858 | 5_4:-65561510 | None:intergenic |
| TGACCATAATCATGCTGCTA+TGG | 0.569530 | 5_4:+65563983 | Msa0864980:CDS |
| GACCGATTAACGCTTGTCCA+TGG | 0.569863 | 5_4:-65561736 | None:intergenic |
| GGAATACCATTCTGAACAGA+AGG | 0.573481 | 5_4:-65560969 | None:intergenic |
| ATGTACAAACTGACACAAGT+AGG | 0.574657 | 5_4:+65561711 | Msa0864980:CDS |
| AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | 5_4:-65563778 | None:intergenic |
| AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 5_4:+65561050 | Msa0864980:CDS |
| GTGTCATCTAGACTTGGAGT+TGG | 0.579578 | 5_4:+65564051 | Msa0864980:three_prime_UTR |
| TCAAATCCAAAAGTCGGTGT+TGG | 0.581990 | 5_4:+65563741 | Msa0864980:CDS |
| TCAAGGTTGCTGAATCCGTA+TGG | 0.584221 | 5_4:+65563628 | Msa0864980:CDS |
| CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 5_4:+65563938 | Msa0864980:CDS |
| AAACAGGTTGATAGTATACA+AGG | 0.585879 | 5_4:+65561431 | Msa0864980:CDS |
| ACTGACACAAGTAGGATCCA+TGG | 0.591692 | 5_4:+65561719 | Msa0864980:CDS |
| GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 5_4:+65563537 | Msa0864980:CDS |
| ACATGCAATGTTGTATGCGT+TGG | 0.594466 | 5_4:+65562103 | Msa0864980:CDS |
| GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 5_4:+65564014 | Msa0864980:CDS |
| CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 5_4:+65563997 | Msa0864980:CDS |
| GACAGAGAAACGTAAAGCTG+TGG | 0.602727 | 5_4:+65563872 | Msa0864980:CDS |
| CAGGAACCATTACGTGCAGA+AGG | 0.603247 | 5_4:-65561143 | None:intergenic |
| CAAGCGTTAATTGGTCCTGT+AGG | 0.605906 | 5_4:+65561389 | Msa0864980:CDS |
| TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 5_4:+65563543 | Msa0864980:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5_4:+65561623 | Msa0864980:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5_4:+65561815 | Msa0864980:CDS |
| ACTGACACAAGTAGTATCCA+AGG | 0.612630 | 5_4:+65561365 | Msa0864980:CDS |
| TGGTGTGATGAACCAACAGC+CGG | 0.618587 | 5_4:-65561095 | None:intergenic |
| ACTAACTCAAGTAATATCCA+AGG | 0.626304 | 5_4:+65562007 | Msa0864980:CDS |
| TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 5_4:+65563827 | Msa0864980:CDS |
| TCAGAGCCTAAGAAACAGGT+TGG | 0.630830 | 5_4:+65561869 | Msa0864980:CDS |
| CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | 5_4:-65563787 | None:intergenic |
| AAACTGTCAAATCCAAAAGT+CGG | 0.636332 | 5_4:+65563735 | Msa0864980:CDS |
| TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 5_4:+65563710 | Msa0864980:CDS |
| AACACAAGAAGAATTTGCAA+CGG | 0.663613 | 5_4:+65561303 | Msa0864980:CDS |
| AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | 5_4:-65563784 | None:intergenic |
| ATTGCCGAACTCAAGCGTAA+CGG | 0.670672 | 5_4:+65563573 | Msa0864980:CDS |
| AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 5_4:+65563830 | Msa0864980:CDS |
| ATTGTGCACTTTATGCAATG+TGG | 0.685678 | 5_4:+65563923 | Msa0864980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTTATCTTGAT+TGG | + | chr5_4:65562384-65562403 | Msa0864980:intron | 10.0% |
| !!! | TTTTTCTTTATTTATTTTGC+TGG | + | chr5_4:65562999-65563018 | Msa0864980:intron | 15.0% |
| !! | TTCAAAGATTATATATAGTT+TGG | - | chr5_4:65563088-65563107 | None:intergenic | 15.0% |
| !!! | TATGTAAAAATATAGTCTTT+TGG | + | chr5_4:65563175-65563194 | Msa0864980:intron | 15.0% |
| !! | AAAAAATATTTGATTGTTCA+AGG | - | chr5_4:65563317-65563336 | None:intergenic | 15.0% |
| !! | GTAAAAGTAATCATTAACTA+CGG | - | chr5_4:65562250-65562269 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCATGTAAGACA+TGG | - | chr5_4:65562332-65562351 | None:intergenic | 20.0% |
| !!! | TGAATATTTTGTATAACTGT+GGG | + | chr5_4:65562496-65562515 | Msa0864980:intron | 20.0% |
| !!! | ATAAGGAAAAAATTGTTGTT+CGG | + | chr5_4:65562682-65562701 | Msa0864980:intron | 20.0% |
| !! | ATGATAATACAACAAATACT+TGG | - | chr5_4:65563437-65563456 | None:intergenic | 20.0% |
| !!! | TTACATGCATTTTAGCTAAA+TGG | - | chr5_4:65562462-65562481 | None:intergenic | 25.0% |
| ! | ATTTAGCTAAAATGCATGTA+AGG | + | chr5_4:65562461-65562480 | Msa0864980:intron | 25.0% |
| !! | GTGAATATTTTGTATAACTG+TGG | + | chr5_4:65562495-65562514 | Msa0864980:intron | 25.0% |
| ! | GTATGAAAATAAGAGAATCT+TGG | - | chr5_4:65562601-65562620 | None:intergenic | 25.0% |
| !! | TAAGGAAAAAATTGTTGTTC+GGG | + | chr5_4:65562683-65562702 | Msa0864980:intron | 25.0% |
| ! | AGATTATATATAGTTTGGCA+TGG | - | chr5_4:65563083-65563102 | None:intergenic | 25.0% |
| ! | TTACATAACTGAACTAGTAA+TGG | - | chr5_4:65563162-65563181 | None:intergenic | 25.0% |
| ! | ACTCAGAAACATTTCATAAA+TGG | - | chr5_4:65563494-65563513 | None:intergenic | 25.0% |
| ! | GTTTCTCTAATACAAGTAAA+AGG | - | chr5_4:65564145-65564164 | None:intergenic | 25.0% |
| AACACAAGAAGAATTTGCAA+CGG | + | chr5_4:65561303-65561322 | Msa0864980:CDS | 30.0% | |
| ! | ATACTATCAACCTGTTTCTT+AGG | - | chr5_4:65561428-65561447 | None:intergenic | 30.0% |
| !! | AAACAGGTTGATAGTATACA+AGG | + | chr5_4:65561431-65561450 | Msa0864980:CDS | 30.0% |
| ATCCAAGGACAAACATTAAT+TGG | + | chr5_4:65561638-65561657 | Msa0864980:CDS | 30.0% | |
| !!! | TTTTTTAGGCTCTGATTGTT+CGG | - | chr5_4:65561768-65561787 | None:intergenic | 30.0% |
| !!! | ACAGAATCAACCTGTTTTTT+AGG | - | chr5_4:65561782-65561801 | None:intergenic | 30.0% |
| ACTAACTCAAGTAATATCCA+AGG | + | chr5_4:65562007-65562026 | Msa0864980:CDS | 30.0% | |
| ACATATAACAAACATGTTGC+TGG | + | chr5_4:65562133-65562152 | Msa0864980:CDS | 30.0% | |
| CATATAACAAACATGTTGCT+GGG | + | chr5_4:65562134-65562153 | Msa0864980:CDS | 30.0% | |
| GACAGAACAAGAACATTAAA+AGG | + | chr5_4:65562359-65562378 | Msa0864980:intron | 30.0% | |
| GTTTAGCTAATTAACTCTGT+AGG | + | chr5_4:65562436-65562455 | Msa0864980:intron | 30.0% | |
| ! | TTGTAGCTTTTGCAAAATCA+GGG | - | chr5_4:65562545-65562564 | None:intergenic | 30.0% |
| ! | TTTGTAGCTTTTGCAAAATC+AGG | - | chr5_4:65562546-65562565 | None:intergenic | 30.0% |
| GAAAATAAGAGAATCTTGGT+GGG | - | chr5_4:65562597-65562616 | None:intergenic | 30.0% | |
| TGAAAATAAGAGAATCTTGG+TGG | - | chr5_4:65562598-65562617 | None:intergenic | 30.0% | |
| !! | GTATTCTAGTTCAAACTAGT+TGG | + | chr5_4:65562627-65562646 | Msa0864980:intron | 30.0% |
| GGAAAAAGTAACTGGAAATA+AGG | + | chr5_4:65562665-65562684 | Msa0864980:intron | 30.0% | |
| ATGAGTTTAGTGTTGTGTTT+CGG | + | chr5_4:65562754-65562773 | Msa0864980:intron | 30.0% | |
| ! | AATAGTCTTTTTCCACTAGA+AGG | + | chr5_4:65562937-65562956 | Msa0864980:intron | 30.0% |
| ACATCATTAAATCCTTCTAG+TGG | - | chr5_4:65562952-65562971 | None:intergenic | 30.0% | |
| AACCTAATATATGACCATAC+AGG | + | chr5_4:65563224-65563243 | Msa0864980:intron | 30.0% | |
| TTCCTGTATGGTCATATATT+AGG | - | chr5_4:65563229-65563248 | None:intergenic | 30.0% | |
| AAAACTAGTGTTGTCAATTG+TGG | - | chr5_4:65563344-65563363 | None:intergenic | 30.0% | |
| CTATCTATAGATATACATCC+AGG | - | chr5_4:65563407-65563426 | None:intergenic | 30.0% | |
| ! | TGAACTGCAAGAAAAGTATA+AGG | + | chr5_4:65563461-65563480 | Msa0864980:intron | 30.0% |
| AAAAGCTGCTAAGAAAATCA+AGG | + | chr5_4:65563611-65563630 | Msa0864980:CDS | 30.0% | |
| TAAGAAACACTTGAAGAACA+TGG | + | chr5_4:65563710-65563729 | Msa0864980:CDS | 30.0% | |
| AAACTGTCAAATCCAAAAGT+CGG | + | chr5_4:65563735-65563754 | Msa0864980:CDS | 30.0% | |
| TTCAGATAAACCGAAAACAA+AGG | + | chr5_4:65563827-65563846 | Msa0864980:CDS | 30.0% | |
| GGTGATTATTTAAATTTGCC+TGG | - | chr5_4:65563959-65563978 | None:intergenic | 30.0% | |
| ! | CTGTTTCATTGTTTGTGTTT+TGG | + | chr5_4:65564171-65564190 | Msa0864980:three_prime_UTR | 30.0% |
| ATAACTTCCATTATGCATTG+AGG | + | chr5_4:65564208-65564227 | Msa0864980:three_prime_UTR | 30.0% | |
| TTGTAAACCTCAATGCATAA+TGG | - | chr5_4:65564218-65564237 | None:intergenic | 30.0% | |
| GACTGCAAAATTACAAGCAT+TGG | - | chr5_4:65560993-65561012 | None:intergenic | 35.0% | |
| TCCTGGCAACTTCAAATTTA+TGG | + | chr5_4:65561161-65561180 | Msa0864980:CDS | 35.0% | |
| ! | TGTGCTTTTCAAAAGAGACT+TGG | - | chr5_4:65561271-65561290 | None:intergenic | 35.0% |
| !! | TCTTTTGAAAAGCACATAGC+TGG | + | chr5_4:65561275-65561294 | Msa0864980:CDS | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr5_4:65561480-65561499 | None:intergenic | 35.0% |
| TCCTTCAATACTTCTTGTGT+CGG | - | chr5_4:65561531-65561550 | None:intergenic | 35.0% | |
| ! | TTCTTAGGCTCTGATTGTTT+GGG | - | chr5_4:65561575-65561594 | None:intergenic | 35.0% |
| ACAAAATCAACCTGCTTCTT+AGG | - | chr5_4:65561590-65561609 | None:intergenic | 35.0% | |
| GACCAATTAATGTTTGTCCT+TGG | - | chr5_4:65561643-65561662 | None:intergenic | 35.0% | |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_4:65561686-65561705 | None:intergenic | 35.0% |
| ATGTACAAACTGACACAAGT+AGG | + | chr5_4:65561615-65561634 | Msa0864980:CDS | 35.0% | |
| ACAATCAGAGCCTAAAAAAC+AGG | + | chr5_4:65561769-65561788 | Msa0864980:CDS | 35.0% | |
| ATCCAAGGACAAGCATTAAT+TGG | + | chr5_4:65561830-65561849 | Msa0864980:CDS | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+TGG | - | chr5_4:65561480-65561499 | None:intergenic | 35.0% |
| ATCCAATCACAAGCCTTAAT+TGG | + | chr5_4:65561926-65561945 | Msa0864980:CDS | 35.0% | |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr5_4:65561480-65561499 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_4:65561686-65561705 | None:intergenic | 35.0% |
| ! | TTTCTTAGGCTCTGATTGTT+CGG | - | chr5_4:65561480-65561499 | None:intergenic | 35.0% |
| ! | ACAGAATCAACCTGTTTCTT+AGG | - | chr5_4:65561686-65561705 | None:intergenic | 35.0% |
| !! | GAAACAGGTTGATTCTGTTA+AGG | + | chr5_4:65561688-65561707 | Msa0864980:CDS | 35.0% |
| GTTGCATGTAAGCTTACAAA+AGG | - | chr5_4:65562193-65562212 | None:intergenic | 35.0% | |
| TTATCTTGATTGGACACACA+AGG | + | chr5_4:65562394-65562413 | Msa0864980:intron | 35.0% | |
| AGTGCTTTGCAAAATCATAG+TGG | + | chr5_4:65562565-65562584 | Msa0864980:intron | 35.0% | |
| AATACCTCTGTAGTTAACAG+AGG | - | chr5_4:65562908-65562927 | None:intergenic | 35.0% | |
| GAGTTCTATCATTTCCTGTA+TGG | - | chr5_4:65563241-65563260 | None:intergenic | 35.0% | |
| !! | TTGTTTGCTATCAGTTATCC+TGG | + | chr5_4:65563386-65563405 | Msa0864980:intron | 35.0% |
| ! | ACTGCAAGAAAAGTATAAGG+CGG | + | chr5_4:65563464-65563483 | Msa0864980:intron | 35.0% |
| AACCTATGAGTCACAAAAAG+TGG | - | chr5_4:65563520-65563539 | None:intergenic | 35.0% | |
| AATGCCATCATTAGACTTCA+AGG | - | chr5_4:65563544-65563563 | None:intergenic | 35.0% | |
| TTGAAGTCTAATGATGGCAT+TGG | + | chr5_4:65563543-65563562 | Msa0864980:CDS | 35.0% | |
| CTTGCAAAATTCACACCATA+CGG | - | chr5_4:65563646-65563665 | None:intergenic | 35.0% | |
| GTTCTTCAAGTGTTTCTTAC+CGG | - | chr5_4:65563709-65563728 | None:intergenic | 35.0% | |
| ! | GTTTTCGGTTTATCTGAATC+TGG | - | chr5_4:65563825-65563844 | None:intergenic | 35.0% |
| AGATAAACCGAAAACAAAGG+AGG | + | chr5_4:65563830-65563849 | Msa0864980:CDS | 35.0% | |
| !!! | ACTGATACCTCCTTTGTTTT+CGG | - | chr5_4:65563840-65563859 | None:intergenic | 35.0% |
| ATTGTGCACTTTATGCAATG+TGG | + | chr5_4:65563923-65563942 | Msa0864980:CDS | 35.0% | |
| ATGCAGTATGTCATTGCTAT+CGG | + | chr5_4:65564090-65564109 | Msa0864980:three_prime_UTR | 35.0% | |
| CTTCTAATATTGCAGGCTGT+TGG | + | chr5_4:65560909-65560928 | Msa0864980:CDS | 40.0% | |
| AGTTTGCCTTCTGTTCAGAA+TGG | + | chr5_4:65560963-65560982 | Msa0864980:CDS | 40.0% | |
| GGAATACCATTCTGAACAGA+AGG | - | chr5_4:65560972-65560991 | None:intergenic | 40.0% | |
| ! | CTTGTAATTTTGCAGTCTGC+TGG | + | chr5_4:65560996-65561015 | Msa0864980:CDS | 40.0% |
| GCCAATGCTTCTAATATTGC+CGG | + | chr5_4:65561076-65561095 | Msa0864980:CDS | 40.0% | |
| ! | GCCATAAATTTGAAGTTGCC+AGG | - | chr5_4:65561165-65561184 | None:intergenic | 40.0% |
| !! | TTGCTGACTTTGGTTTGGTT+AGG | - | chr5_4:65561209-65561228 | None:intergenic | 40.0% |
| !! | AAGCTTTGCTGACTTTGGTT+TGG | - | chr5_4:65561214-65561233 | None:intergenic | 40.0% |
| !! | TCTGAAAGCTTTGCTGACTT+TGG | - | chr5_4:65561219-65561238 | None:intergenic | 40.0% |
| TTCGCATGAGATGCAATTGT+AGG | - | chr5_4:65561338-65561357 | None:intergenic | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_4:65561365-65561384 | Msa0864980:CDS | 40.0% | |
| ATCCAAGGTCAAGCGTTAAT+TGG | + | chr5_4:65561380-65561399 | Msa0864980:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561481-65561500 | Msa0864980:CDS | 40.0% | |
| ! | ACGGAATCAACCTGTTTCTT+AGG | - | chr5_4:65561494-65561513 | None:intergenic | 40.0% |
| !! | GTCGGTTTGTACATTCTCAA+CGG | - | chr5_4:65561513-65561532 | None:intergenic | 40.0% |
| !! | ACCGACACAAGAAGTATTGA+AGG | + | chr5_4:65561527-65561546 | Msa0864980:CDS | 40.0% |
| ! | CTTCTTAGGCTCTGATTGTT+TGG | - | chr5_4:65561576-65561595 | None:intergenic | 40.0% |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_4:65561365-65561384 | Msa0864980:CDS | 40.0% | |
| ACATTAATTGGTCCTGTAGC+CGG | + | chr5_4:65561650-65561669 | Msa0864980:CDS | 40.0% | |
| ATCCATGGACAAGCGTTAAT+CGG | + | chr5_4:65561734-65561753 | Msa0864980:CDS | 40.0% | |
| ACTGACACAAGTAGTATCCA+AGG | + | chr5_4:65561365-65561384 | Msa0864980:CDS | 40.0% | |
| GACCAATTAATGCTTGTCCT+TGG | - | chr5_4:65561835-65561854 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561481-65561500 | Msa0864980:CDS | 40.0% | |
| ! | ACAGAACCAACCTGTTTCTT+AGG | - | chr5_4:65561878-65561897 | None:intergenic | 40.0% |
| GACCAATTAAGGCTTGTGAT+TGG | - | chr5_4:65561931-65561950 | None:intergenic | 40.0% | |
| TTCGGCTAAAGGACCAATTA+AGG | - | chr5_4:65561942-65561961 | None:intergenic | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561481-65561500 | Msa0864980:CDS | 40.0% | |
| ATCCAAGGACAAGCGTTAAT+TGG | + | chr5_4:65562022-65562041 | Msa0864980:CDS | 40.0% | |
| ACAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561481-65561500 | Msa0864980:CDS | 40.0% | |
| ACATGCAATGTTGTATGCGT+TGG | + | chr5_4:65562103-65562122 | Msa0864980:CDS | 40.0% | |
| ATCCACTGGGAAAAAGTAAC+TGG | + | chr5_4:65562657-65562676 | Msa0864980:intron | 40.0% | |
| !!! | TTCCAGTTACTTTTTCCCAG+TGG | - | chr5_4:65562662-65562681 | None:intergenic | 40.0% |
| !!! | ATAAGTGGGAGGGTTTTTTG+AGG | + | chr5_4:65562723-65562742 | Msa0864980:intron | 40.0% |
| TCGTTTCATGGTCAAATTGC+AGG | - | chr5_4:65562789-65562808 | None:intergenic | 40.0% | |
| TCAACGTTACAGTCGTTTCA+TGG | - | chr5_4:65562801-65562820 | None:intergenic | 40.0% | |
| GCTAGGTTCTACTGAAATCA+GGG | - | chr5_4:65562844-65562863 | None:intergenic | 40.0% | |
| AGCTAGGTTCTACTGAAATC+AGG | - | chr5_4:65562845-65562864 | None:intergenic | 40.0% | |
| ! | CTGCAAGAAAAGTATAAGGC+GGG | + | chr5_4:65563465-65563484 | Msa0864980:intron | 40.0% |
| ! | TGCAAGAAAAGTATAAGGCG+GGG | + | chr5_4:65563466-65563485 | Msa0864980:intron | 40.0% |
| !!! | GACCACTTTTTGTGACTCAT+AGG | + | chr5_4:65563515-65563534 | Msa0864980:intron | 40.0% |
| GTTGCCTTGAAGTCTAATGA+TGG | + | chr5_4:65563537-65563556 | Msa0864980:CDS | 40.0% | |
| TCAAATCCAAAAGTCGGTGT+TGG | + | chr5_4:65563741-65563760 | Msa0864980:CDS | 40.0% | |
| AAACGTAAAGCTGTGGAAAG+AGG | + | chr5_4:65563879-65563898 | Msa0864980:CDS | 40.0% | |
| CAGCATGATTATGGTCACTA+AGG | - | chr5_4:65563980-65563999 | None:intergenic | 40.0% | |
| TGACCATAATCATGCTGCTA+TGG | + | chr5_4:65563983-65564002 | Msa0864980:CDS | 40.0% | |
| TCACCATAGCAGCATGATTA+TGG | - | chr5_4:65563989-65564008 | None:intergenic | 40.0% | |
| GTCATTGTGTCATCTAGACT+TGG | + | chr5_4:65564045-65564064 | Msa0864980:three_prime_UTR | 40.0% | |
| TGAACAGAAGGCAAACTTGC+AGG | - | chr5_4:65560960-65560979 | None:intergenic | 45.0% | |
| ! | GCCGGCAATATTAGAAGCAT+TGG | - | chr5_4:65561080-65561099 | None:intergenic | 45.0% |
| ! | CTTCTAATATTGCCGGCTGT+TGG | + | chr5_4:65561083-65561102 | Msa0864980:CDS | 45.0% |
| AGTTTGCCTTCTGCACGTAA+TGG | + | chr5_4:65561137-65561156 | Msa0864980:CDS | 45.0% | |
| GACCAATTAACGCTTGACCT+TGG | - | chr5_4:65561385-65561404 | None:intergenic | 45.0% | |
| CAAGCGTTAATTGGTCCTGT+AGG | + | chr5_4:65561389-65561408 | Msa0864980:CDS | 45.0% | |
| GCAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561415-65561434 | Msa0864980:CDS | 45.0% | |
| ACAATCAGAGCCTAAGAAGC+AGG | + | chr5_4:65561577-65561596 | Msa0864980:CDS | 45.0% | |
| CATTAATTGGTCCTGTAGCC+GGG | + | chr5_4:65561651-65561670 | Msa0864980:CDS | 45.0% | |
| ! | TTTCTTAGGCTCTGATTGCC+CGG | - | chr5_4:65561672-65561691 | None:intergenic | 45.0% |
| GCAATCAGAGCCTAAGAAAC+AGG | + | chr5_4:65561415-65561434 | Msa0864980:CDS | 45.0% | |
| ACTGACACAAGTAGGATCCA+TGG | + | chr5_4:65561719-65561738 | Msa0864980:CDS | 45.0% | |
| TCAGAGCCTAAGAAACAGGT+TGG | + | chr5_4:65561419-65561438 | Msa0864980:CDS | 45.0% | |
| GACCAATTAACGCTTGTCCT+TGG | - | chr5_4:65562027-65562046 | None:intergenic | 45.0% | |
| CCACTAGTGTGCATTATGTG+TGG | - | chr5_4:65562280-65562299 | None:intergenic | 45.0% | |
| CCACACATAATGCACACTAG+TGG | + | chr5_4:65562277-65562296 | Msa0864980:intron | 45.0% | |
| TTGGACACACAAGGCAAGAT+AGG | + | chr5_4:65562403-65562422 | Msa0864980:intron | 45.0% | |
| AAGGCAAGATAGGATCACTG+TGG | + | chr5_4:65562413-65562432 | Msa0864980:intron | 45.0% | |
| AGGCAAGATAGGATCACTGT+GGG | + | chr5_4:65562414-65562433 | Msa0864980:intron | 45.0% | |
| !! | CTGTGGGTTTGCTGAAATCT+CGG | + | chr5_4:65562512-65562531 | Msa0864980:intron | 45.0% |
| ! | TAGTTGGCTTACTCATCCAC+TGG | + | chr5_4:65562643-65562662 | Msa0864980:intron | 45.0% |
| ! | AGTTGGCTTACTCATCCACT+GGG | + | chr5_4:65562644-65562663 | Msa0864980:intron | 45.0% |
| ATGTAGACAGCGGCAATAAG+TGG | + | chr5_4:65562708-65562727 | Msa0864980:intron | 45.0% | |
| TGTAGACAGCGGCAATAAGT+GGG | + | chr5_4:65562709-65562728 | Msa0864980:intron | 45.0% | |
| AATACTGTGGCATGACGTAG+CGG | - | chr5_4:65562869-65562888 | None:intergenic | 45.0% | |
| TTGCGGACGCTATAATACTG+TGG | - | chr5_4:65562882-65562901 | None:intergenic | 45.0% | |
| GTAGTTAACAGAGGCTGTTG+CGG | - | chr5_4:65562899-65562918 | None:intergenic | 45.0% | |
| ACAGCCTCTGTTAACTACAG+AGG | + | chr5_4:65562901-65562920 | Msa0864980:intron | 45.0% | |
| ATTGCCGAACTCAAGCGTAA+CGG | + | chr5_4:65563573-65563592 | Msa0864980:CDS | 45.0% | |
| ATCACCGTTACGCTTGAGTT+CGG | - | chr5_4:65563580-65563599 | None:intergenic | 45.0% | |
| TCAAGGTTGCTGAATCCGTA+TGG | + | chr5_4:65563628-65563647 | Msa0864980:CDS | 45.0% | |
| ! | AATTGAAGTGCCTATTGCGG+TGG | - | chr5_4:65563787-65563806 | None:intergenic | 45.0% |
| ACCGCAATAGGCACTTCAAT+TGG | + | chr5_4:65563786-65563805 | Msa0864980:CDS | 45.0% | |
| ! | CCCAATTGAAGTGCCTATTG+CGG | - | chr5_4:65563790-65563809 | None:intergenic | 45.0% |
| CCGCAATAGGCACTTCAATT+GGG | + | chr5_4:65563787-65563806 | Msa0864980:CDS | 45.0% | |
| !!! | TCTGAATCTGGCTTTTCCTG+TGG | - | chr5_4:65563813-65563832 | None:intergenic | 45.0% |
| GACAGAGAAACGTAAAGCTG+TGG | + | chr5_4:65563872-65563891 | Msa0864980:CDS | 45.0% | |
| CAATGTGGTGTGTAATAGCC+AGG | + | chr5_4:65563938-65563957 | Msa0864980:CDS | 45.0% | |
| TCATGCTGCTATGGTGAAGA+AGG | + | chr5_4:65563992-65564011 | Msa0864980:CDS | 45.0% | |
| AAGAAGGCAGGGTTAATCAC+TGG | + | chr5_4:65564008-65564027 | Msa0864980:CDS | 45.0% | |
| GTGTCATCTAGACTTGGAGT+TGG | + | chr5_4:65564051-65564070 | Msa0864980:three_prime_UTR | 45.0% | |
| AGTTTGCCTTCTGCGCAGAA+TGG | + | chr5_4:65561050-65561069 | Msa0864980:CDS | 50.0% | |
| TGGTGTGATGAACCAACAGC+CGG | - | chr5_4:65561098-65561117 | None:intergenic | 50.0% | |
| CAGGAACCATTACGTGCAGA+AGG | - | chr5_4:65561146-65561165 | None:intergenic | 50.0% | |
| CTTCTGCACGTAATGGTTCC+TGG | + | chr5_4:65561144-65561163 | Msa0864980:CDS | 50.0% | |
| GACCGATTAACGCTTGTCCA+TGG | - | chr5_4:65561739-65561758 | None:intergenic | 50.0% | |
| ! | GGCTCTGATTGTTCGGCTAA+AGG | - | chr5_4:65561953-65561972 | None:intergenic | 50.0% |
| ! | GGCTCTGATTGTTCGGCTAT+AGG | - | chr5_4:65562049-65562068 | None:intergenic | 50.0% |
| ! | TGGGAGAAAGCATGCTGCTA+AGG | + | chr5_4:65562153-65562172 | Msa0864980:CDS | 50.0% |
| TGTTCGGGAGATGTAGACAG+CGG | + | chr5_4:65562698-65562717 | Msa0864980:intron | 50.0% | |
| ! | GACTGTAACGTTGACTGCCA+CGG | + | chr5_4:65562807-65562826 | Msa0864980:intron | 50.0% |
| ! | ACTGTAACGTTGACTGCCAC+GGG | + | chr5_4:65562808-65562827 | Msa0864980:intron | 50.0% |
| CGCTTGAGTTCGGCAATAGA+TGG | - | chr5_4:65563570-65563589 | None:intergenic | 50.0% | |
| AGCTACACTGCACACTTGTC+CGG | + | chr5_4:65563687-65563706 | Msa0864980:CDS | 50.0% | |
| CTGCTATGGTGAAGAAGGCA+GGG | + | chr5_4:65563997-65564016 | Msa0864980:CDS | 50.0% | |
| ! | GCAGGGTTAATCACTGGTTG+AGG | + | chr5_4:65564014-65564033 | Msa0864980:CDS | 50.0% |
| TGCGCAGAAGGCAAACTTGC+AGG | - | chr5_4:65561047-65561066 | None:intergenic | 55.0% | |
| GGCATACCATTCTGCGCAGA+AGG | - | chr5_4:65561059-65561078 | None:intergenic | 55.0% | |
| CGTGCAGAAGGCAAACTTGC+AGG | - | chr5_4:65561134-65561153 | None:intergenic | 55.0% | |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr5_4:65561473-65561492 | None:intergenic | 55.0% |
| ! | GGCTCTGATTGTTCGGCTAC+AGG | - | chr5_4:65561473-65561492 | None:intergenic | 55.0% |
| AGACAGCGGCAATAAGTGGG+AGG | + | chr5_4:65562712-65562731 | Msa0864980:intron | 55.0% | |
| GACAGCGGCAATAAGTGGGA+GGG | + | chr5_4:65562713-65562732 | Msa0864980:intron | 55.0% | |
| !! | CCAAAAGTCGGTGTTGGCAG+CGG | + | chr5_4:65563747-65563766 | Msa0864980:CDS | 55.0% |
| !! | TATTGCGGTGGTGGTGGTAG+TGG | - | chr5_4:65563775-65563794 | None:intergenic | 55.0% |
| ACTACCACCACCACCGCAAT+AGG | + | chr5_4:65563774-65563793 | Msa0864980:CDS | 55.0% | |
| ! | TGAAGTGCCTATTGCGGTGG+TGG | - | chr5_4:65563784-65563803 | None:intergenic | 55.0% |
| AGGCACTTCAATTGGGCCAC+AGG | + | chr5_4:65563794-65563813 | Msa0864980:CDS | 55.0% | |
| GCTGCTATGGTGAAGAAGGC+AGG | + | chr5_4:65563996-65564015 | Msa0864980:CDS | 55.0% | |
| ! | TTGCAGGCGCTGCTGAAGTC+TGG | - | chr5_4:65561031-65561050 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGCTCGCCTAC+AGG | - | chr5_4:65561407-65561426 | None:intergenic | 60.0% |
| GGCATGACGTAGCGGTAGCT+AGG | - | chr5_4:65562861-65562880 | None:intergenic | 60.0% | |
| !!! | CCGCTGCCAACACCGACTTT+TGG | - | chr5_4:65563750-65563769 | None:intergenic | 60.0% |
| ! | AGTGCCTATTGCGGTGGTGG+TGG | - | chr5_4:65563781-65563800 | None:intergenic | 60.0% |
| ! | GGCTCTGATTGCCCGGCTAC+AGG | - | chr5_4:65561665-65561684 | None:intergenic | 65.0% |
| TCAGGGCAGCGCAGTGCCCG+TGG | - | chr5_4:65562827-65562846 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65560906 | 65564250 | 65560906 | ID=Msa0864980;Name=Msa0864980 |
| chr5_4 | mRNA | 65560906 | 65564250 | 65560906 | ID=Msa0864980-mRNA-1;Parent=Msa0864980;Name=Msa0864980-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|216|588 |
| chr5_4 | exon | 65560906 | 65562174 | 65560906 | ID=Msa0864980-mRNA-1:exon:20661;Parent=Msa0864980-mRNA-1 |
| chr5_4 | exon | 65563537 | 65564250 | 65563537 | ID=Msa0864980-mRNA-1:exon:20662;Parent=Msa0864980-mRNA-1 |
| chr5_4 | CDS | 65560906 | 65562174 | 65560906 | ID=Msa0864980-mRNA-1:cds;Parent=Msa0864980-mRNA-1 |
| chr5_4 | CDS | 65563537 | 65564034 | 65563537 | ID=Msa0864980-mRNA-1:cds;Parent=Msa0864980-mRNA-1 |
| chr5_4 | three_prime_UTR | 65564035 | 65564250 | 65564035 | ID=Msa0864980-mRNA-1:three_prime_utr;Parent=Msa0864980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
