Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865240 | XP_003618052.1 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 6.83e-174 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865240 | G7K0M6 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 3.26e-174 | 490 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0865240 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865240 | MtrunA17_Chr5g0448221 | 90.370 | 270 | 24 | 1 | 1 | 268 | 1 | 270 | 6.28e-178 | 490 |
| Msa0865240 | MtrunA17_Chr1g0169561 | 32.195 | 205 | 85 | 9 | 44 | 202 | 14 | 210 | 1.26e-13 | 69.7 |
| Msa0865240 | MtrunA17_Chr2g0331601 | 30.000 | 170 | 75 | 5 | 62 | 207 | 138 | 287 | 3.80e-13 | 68.2 |
| Msa0865240 | MtrunA17_Chr1g0169521 | 31.282 | 195 | 85 | 7 | 49 | 202 | 24 | 210 | 3.31e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0865240 | AT5G56200.1 | 44.048 | 84 | 41 | 1 | 60 | 137 | 77 | 160 | 1.12e-12 | 67.8 |
| Msa0865240 | AT2G26940.1 | 33.981 | 103 | 43 | 1 | 62 | 139 | 49 | 151 | 5.70e-12 | 65.1 |
Find 51 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTATTATCCTTATT+AGG | 0.131951 | 5_4:+65911342 | None:intergenic |
| ATACCCCTCCATTCCCTTTC+AGG | 0.172402 | 5_4:+65911369 | None:intergenic |
| GTGACCATGTAAAGCCTTAT+TGG | 0.177322 | 5_4:+65911404 | None:intergenic |
| ATCAAAAGATAATGTCTTAT+TGG | 0.200998 | 5_4:-65910977 | Msa0865240:CDS |
| ATCATCAATAACCAATTCTT+TGG | 0.220906 | 5_4:+65911272 | None:intergenic |
| CAATATTATTATCCTTATTA+GGG | 0.247792 | 5_4:+65911343 | None:intergenic |
| CATCAAACTTATTCTTCTTT+TGG | 0.256389 | 5_4:+65911831 | None:intergenic |
| AATAACCAATTCTTTGGAAT+TGG | 0.272420 | 5_4:+65911278 | None:intergenic |
| TCATCTTGATGATGATCCTT+TGG | 0.317224 | 5_4:+65911618 | None:intergenic |
| TTTAGGTGTGGAAAAGGATT+AGG | 0.327731 | 5_4:-65911546 | Msa0865240:CDS |
| TGCATCCAATTCCAAAGAAT+TGG | 0.334606 | 5_4:-65911283 | Msa0865240:CDS |
| CTTTCCCTAGAGCTTGACTA+TGG | 0.341322 | 5_4:+65911508 | None:intergenic |
| TGACAACTTCAATGAGGATT+TGG | 0.347180 | 5_4:-65911133 | Msa0865240:CDS |
| TTGATGATGAATCAAAATCT+TGG | 0.371768 | 5_4:-65911257 | Msa0865240:CDS |
| GAGGGGTATGAACCCTAATA+AGG | 0.375613 | 5_4:-65911355 | Msa0865240:CDS |
| TACCCCTCCATTCCCTTTCA+GGG | 0.375926 | 5_4:+65911370 | None:intergenic |
| GTTGTCATGTAAATGTTTAT+CGG | 0.376472 | 5_4:+65911149 | None:intergenic |
| AAAGAACTTCCAATCCAATA+AGG | 0.383910 | 5_4:-65911418 | Msa0865240:CDS |
| AATATTGATTATTATAATGA+TGG | 0.426171 | 5_4:-65911327 | Msa0865240:CDS |
| TGATGATGAATCAAAATCTT+GGG | 0.427675 | 5_4:-65911256 | Msa0865240:CDS |
| CATGTAAAGCCTTATTGGAT+TGG | 0.438633 | 5_4:+65911409 | None:intergenic |
| TTTGGATGATGAGGATAAGA+AGG | 0.451348 | 5_4:-65911115 | Msa0865240:CDS |
| CAATCCAATAAGGCTTTACA+TGG | 0.457233 | 5_4:-65911408 | Msa0865240:CDS |
| GCTAATTGCAATTCTAATGA+TGG | 0.457837 | 5_4:-65911465 | Msa0865240:CDS |
| GCACGAAGATTGTTTAAAAC+CGG | 0.468350 | 5_4:-65911234 | Msa0865240:CDS |
| CCTAGTACTAGTGGTCTTGT+TGG | 0.468849 | 5_4:-65911081 | Msa0865240:CDS |
| CAAAAGAAGAATAAGTTTGA+TGG | 0.471977 | 5_4:-65911830 | Msa0865240:CDS |
| AGAATCCATAGTCAAGCTCT+AGG | 0.477759 | 5_4:-65911513 | Msa0865240:CDS |
| CATGAGATCTCACCCTGAAA+GGG | 0.502988 | 5_4:-65911382 | Msa0865240:CDS |
| CCAACAAGACCACTAGTACT+AGG | 0.509402 | 5_4:+65911081 | None:intergenic |
| TTGTTTAAAACCGGTAAAAG+AGG | 0.519380 | 5_4:-65911225 | Msa0865240:CDS |
| ACATGAGATCTCACCCTGAA+AGG | 0.521597 | 5_4:-65911383 | Msa0865240:CDS |
| TGATGGTGGTAGGATACATC+AGG | 0.528563 | 5_4:-65911813 | Msa0865240:intron |
| TAGTCAAGCTCTAGGGAAAG+AGG | 0.530133 | 5_4:-65911505 | Msa0865240:CDS |
| AGAATGACAATAACAAAAGA+AGG | 0.532053 | 5_4:-65911035 | Msa0865240:CDS |
| AAGGATCATCATCAAGATGA+AGG | 0.532398 | 5_4:-65911615 | Msa0865240:CDS |
| AGGTGTGGAAAAGGATTAGG+TGG | 0.533754 | 5_4:-65911543 | Msa0865240:CDS |
| CAATGAGGATTTGGATGATG+AGG | 0.536568 | 5_4:-65911124 | Msa0865240:CDS |
| AGAATAAGTTTGATGGTGGT+AGG | 0.553715 | 5_4:-65911823 | Msa0865240:CDS |
| GATCTCACCCTGAAAGGGAA+TGG | 0.563550 | 5_4:-65911377 | Msa0865240:CDS |
| GAATCCATAGTCAAGCTCTA+GGG | 0.567403 | 5_4:-65911512 | Msa0865240:CDS |
| TCACCCTGAAAGGGAATGGA+GGG | 0.580204 | 5_4:-65911373 | Msa0865240:CDS |
| CTCACCCTGAAAGGGAATGG+AGG | 0.583418 | 5_4:-65911374 | Msa0865240:CDS |
| TAACAAAAGAAGGAAGAAGC+TGG | 0.586820 | 5_4:-65911025 | Msa0865240:CDS |
| TTTACATGACAACTTCAATG+AGG | 0.602810 | 5_4:-65911139 | Msa0865240:CDS |
| GGTAAAAGAGGTCGTTCGAG+TGG | 0.603484 | 5_4:-65911213 | Msa0865240:CDS |
| AGTCAAGCTCTAGGGAAAGA+GGG | 0.609576 | 5_4:-65911504 | Msa0865240:CDS |
| AAGAAGAATAAGTTTGATGG+TGG | 0.622051 | 5_4:-65911827 | Msa0865240:CDS |
| AATGTTGTACCTAGTACTAG+TGG | 0.625803 | 5_4:-65911090 | Msa0865240:CDS |
| CACCCTGAAAGGGAATGGAG+GGG | 0.655548 | 5_4:-65911372 | Msa0865240:CDS |
| AGAGGGTGAGTCGAAAGCAA+AGG | 0.661254 | 5_4:-65911487 | Msa0865240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGTAACAAAATTTTT+AGG | - | chr5_4:65911254-65911273 | Msa0865240:CDS | 10.0% |
| !!! | AATATTGATTATTATAATGA+TGG | - | chr5_4:65911490-65911509 | Msa0865240:CDS | 10.0% |
| !!! | AATTTTGTAACAAAATTTTT+AGG | - | chr5_4:65911254-65911273 | Msa0865240:CDS | 10.0% |
| !!! | AATATTGATTATTATAATGA+TGG | - | chr5_4:65911490-65911509 | Msa0865240:CDS | 10.0% |
| !!! | TTTTCTTTTAATAGAATTCT+AGG | - | chr5_4:65911101-65911120 | Msa0865240:CDS | 15.0% |
| !!! | TTTCTTTTAATAGAATTCTA+GGG | - | chr5_4:65911102-65911121 | Msa0865240:CDS | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | + | chr5_4:65911477-65911496 | None:intergenic | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | + | chr5_4:65911478-65911497 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTAATAGAATTCT+AGG | - | chr5_4:65911101-65911120 | Msa0865240:CDS | 15.0% |
| !!! | TTTCTTTTAATAGAATTCTA+GGG | - | chr5_4:65911102-65911121 | Msa0865240:CDS | 15.0% |
| !! | CAATATTATTATCCTTATTA+GGG | + | chr5_4:65911477-65911496 | None:intergenic | 15.0% |
| !! | TCAATATTATTATCCTTATT+AGG | + | chr5_4:65911478-65911497 | None:intergenic | 15.0% |
| !! | TAAAGTTTATGAAAAACCAA+AGG | - | chr5_4:65911183-65911202 | Msa0865240:CDS | 20.0% |
| !! | ATCAAAAGATAATGTCTTAT+TGG | - | chr5_4:65911840-65911859 | Msa0865240:CDS | 20.0% |
| !! | TAAAGTTTATGAAAAACCAA+AGG | - | chr5_4:65911183-65911202 | Msa0865240:CDS | 20.0% |
| !! | ATCAAAAGATAATGTCTTAT+TGG | - | chr5_4:65911840-65911859 | Msa0865240:CDS | 20.0% |
| !! | TTATTCTTCTTTTGGTCATT+GGG | + | chr5_4:65910981-65911000 | None:intergenic | 25.0% |
| !! | CATCAAACTTATTCTTCTTT+TGG | + | chr5_4:65910989-65911008 | None:intergenic | 25.0% |
| ! | CAAAAGAAGAATAAGTTTGA+TGG | - | chr5_4:65910987-65911006 | Msa0865240:CDS | 25.0% |
| !! | TAAACTTTTCTTCTTCTCTA+TGG | + | chr5_4:65911143-65911162 | None:intergenic | 25.0% |
| !! | TGGTTTTTCATAAACTTTAC+AGG | + | chr5_4:65911182-65911201 | None:intergenic | 25.0% |
| !!! | TGTAACAAAATTTTTAGGTG+TGG | - | chr5_4:65911259-65911278 | Msa0865240:CDS | 25.0% |
| !!! | AAAATTTTTAGGTGTGGAAA+AGG | - | chr5_4:65911265-65911284 | Msa0865240:CDS | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | + | chr5_4:65911542-65911561 | None:intergenic | 25.0% |
| ! | ATCATCAATAACCAATTCTT+TGG | + | chr5_4:65911548-65911567 | None:intergenic | 25.0% |
| !!! | TTGATGATGAATCAAAATCT+TGG | - | chr5_4:65911560-65911579 | Msa0865240:CDS | 25.0% |
| !! | TGATGATGAATCAAAATCTT+GGG | - | chr5_4:65911561-65911580 | Msa0865240:CDS | 25.0% |
| ! | GTTGTCATGTAAATGTTTAT+CGG | + | chr5_4:65911671-65911690 | None:intergenic | 25.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | - | chr5_4:65911782-65911801 | Msa0865240:intron | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | + | chr5_4:65911832-65911851 | None:intergenic | 25.0% |
| !! | TTATTCTTCTTTTGGTCATT+GGG | + | chr5_4:65910981-65911000 | None:intergenic | 25.0% |
| !! | CATCAAACTTATTCTTCTTT+TGG | + | chr5_4:65910989-65911008 | None:intergenic | 25.0% |
| ! | CAAAAGAAGAATAAGTTTGA+TGG | - | chr5_4:65910987-65911006 | Msa0865240:CDS | 25.0% |
| !! | TAAACTTTTCTTCTTCTCTA+TGG | + | chr5_4:65911143-65911162 | None:intergenic | 25.0% |
| !! | TGGTTTTTCATAAACTTTAC+AGG | + | chr5_4:65911182-65911201 | None:intergenic | 25.0% |
| !!! | TGTAACAAAATTTTTAGGTG+TGG | - | chr5_4:65911259-65911278 | Msa0865240:CDS | 25.0% |
| !!! | AAAATTTTTAGGTGTGGAAA+AGG | - | chr5_4:65911265-65911284 | Msa0865240:CDS | 25.0% |
| !!! | AATAACCAATTCTTTGGAAT+TGG | + | chr5_4:65911542-65911561 | None:intergenic | 25.0% |
| ! | ATCATCAATAACCAATTCTT+TGG | + | chr5_4:65911548-65911567 | None:intergenic | 25.0% |
| !!! | TTGATGATGAATCAAAATCT+TGG | - | chr5_4:65911560-65911579 | Msa0865240:CDS | 25.0% |
| !! | TGATGATGAATCAAAATCTT+GGG | - | chr5_4:65911561-65911580 | Msa0865240:CDS | 25.0% |
| ! | GTTGTCATGTAAATGTTTAT+CGG | + | chr5_4:65911671-65911690 | None:intergenic | 25.0% |
| ! | AGAATGACAATAACAAAAGA+AGG | - | chr5_4:65911782-65911801 | Msa0865240:intron | 25.0% |
| !! | TTATCTTTTGATGTTGAACA+TGG | + | chr5_4:65911832-65911851 | None:intergenic | 25.0% |
| ! | CTTATTCTTCTTTTGGTCAT+TGG | + | chr5_4:65910982-65911001 | None:intergenic | 30.0% |
| AAGAAGAATAAGTTTGATGG+TGG | - | chr5_4:65910990-65911009 | Msa0865240:CDS | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | - | chr5_4:65911352-65911371 | Msa0865240:CDS | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | - | chr5_4:65911399-65911418 | Msa0865240:CDS | 30.0% | |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | - | chr5_4:65911592-65911611 | Msa0865240:CDS | 30.0% |
| TTTACATGACAACTTCAATG+AGG | - | chr5_4:65911678-65911697 | Msa0865240:CDS | 30.0% | |
| ! | CTTATTCTTCTTTTGGTCAT+TGG | + | chr5_4:65910982-65911001 | None:intergenic | 30.0% |
| AAGAAGAATAAGTTTGATGG+TGG | - | chr5_4:65910990-65911009 | Msa0865240:CDS | 30.0% | |
| GCTAATTGCAATTCTAATGA+TGG | - | chr5_4:65911352-65911371 | Msa0865240:CDS | 30.0% | |
| AAAGAACTTCCAATCCAATA+AGG | - | chr5_4:65911399-65911418 | Msa0865240:CDS | 30.0% | |
| ! | TTGTTTAAAACCGGTAAAAG+AGG | - | chr5_4:65911592-65911611 | Msa0865240:CDS | 30.0% |
| TTTACATGACAACTTCAATG+AGG | - | chr5_4:65911678-65911697 | Msa0865240:CDS | 30.0% | |
| !! | AGAATAAGTTTGATGGTGGT+AGG | - | chr5_4:65910994-65911013 | Msa0865240:CDS | 35.0% |
| ! | CTTCTTCTCTATGGTTTTCA+TGG | + | chr5_4:65911134-65911153 | None:intergenic | 35.0% |
| !! | TCATCTTGATGATGATCCTT+TGG | + | chr5_4:65911202-65911221 | None:intergenic | 35.0% |
| AAGGATCATCATCAAGATGA+AGG | - | chr5_4:65911202-65911221 | Msa0865240:CDS | 35.0% | |
| TTTAGGTGTGGAAAAGGATT+AGG | - | chr5_4:65911271-65911290 | Msa0865240:CDS | 35.0% | |
| !! | CATGTAAAGCCTTATTGGAT+TGG | + | chr5_4:65911411-65911430 | None:intergenic | 35.0% |
| CAATCCAATAAGGCTTTACA+TGG | - | chr5_4:65911409-65911428 | Msa0865240:CDS | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | - | chr5_4:65911534-65911553 | Msa0865240:CDS | 35.0% | |
| ! | GCACGAAGATTGTTTAAAAC+CGG | - | chr5_4:65911583-65911602 | Msa0865240:CDS | 35.0% |
| TGACAACTTCAATGAGGATT+TGG | - | chr5_4:65911684-65911703 | Msa0865240:CDS | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | - | chr5_4:65911702-65911721 | Msa0865240:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | - | chr5_4:65911727-65911746 | Msa0865240:intron | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | - | chr5_4:65911792-65911811 | Msa0865240:intron | 35.0% | |
| !! | AGAATAAGTTTGATGGTGGT+AGG | - | chr5_4:65910994-65911013 | Msa0865240:CDS | 35.0% |
| ! | CTTCTTCTCTATGGTTTTCA+TGG | + | chr5_4:65911134-65911153 | None:intergenic | 35.0% |
| !! | TCATCTTGATGATGATCCTT+TGG | + | chr5_4:65911202-65911221 | None:intergenic | 35.0% |
| AAGGATCATCATCAAGATGA+AGG | - | chr5_4:65911202-65911221 | Msa0865240:CDS | 35.0% | |
| TTTAGGTGTGGAAAAGGATT+AGG | - | chr5_4:65911271-65911290 | Msa0865240:CDS | 35.0% | |
| !! | CATGTAAAGCCTTATTGGAT+TGG | + | chr5_4:65911411-65911430 | None:intergenic | 35.0% |
| CAATCCAATAAGGCTTTACA+TGG | - | chr5_4:65911409-65911428 | Msa0865240:CDS | 35.0% | |
| TGCATCCAATTCCAAAGAAT+TGG | - | chr5_4:65911534-65911553 | Msa0865240:CDS | 35.0% | |
| ! | GCACGAAGATTGTTTAAAAC+CGG | - | chr5_4:65911583-65911602 | Msa0865240:CDS | 35.0% |
| TGACAACTTCAATGAGGATT+TGG | - | chr5_4:65911684-65911703 | Msa0865240:CDS | 35.0% | |
| TTTGGATGATGAGGATAAGA+AGG | - | chr5_4:65911702-65911721 | Msa0865240:CDS | 35.0% | |
| AATGTTGTACCTAGTACTAG+TGG | - | chr5_4:65911727-65911746 | Msa0865240:intron | 35.0% | |
| TAACAAAAGAAGGAAGAAGC+TGG | - | chr5_4:65911792-65911811 | Msa0865240:intron | 35.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | - | chr5_4:65911304-65911323 | Msa0865240:CDS | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | - | chr5_4:65911305-65911324 | Msa0865240:CDS | 40.0% | |
| ! | GTGACCATGTAAAGCCTTAT+TGG | + | chr5_4:65911416-65911435 | None:intergenic | 40.0% |
| CAATGAGGATTTGGATGATG+AGG | - | chr5_4:65911693-65911712 | Msa0865240:CDS | 40.0% | |
| AGAATCCATAGTCAAGCTCT+AGG | - | chr5_4:65911304-65911323 | Msa0865240:CDS | 40.0% | |
| GAATCCATAGTCAAGCTCTA+GGG | - | chr5_4:65911305-65911324 | Msa0865240:CDS | 40.0% | |
| ! | GTGACCATGTAAAGCCTTAT+TGG | + | chr5_4:65911416-65911435 | None:intergenic | 40.0% |
| CAATGAGGATTTGGATGATG+AGG | - | chr5_4:65911693-65911712 | Msa0865240:CDS | 40.0% | |
| !! | TGATGGTGGTAGGATACATC+AGG | - | chr5_4:65911004-65911023 | Msa0865240:CDS | 45.0% |
| AGGTGTGGAAAAGGATTAGG+TGG | - | chr5_4:65911274-65911293 | Msa0865240:CDS | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | + | chr5_4:65911312-65911331 | None:intergenic | 45.0% | |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | - | chr5_4:65911312-65911331 | Msa0865240:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | - | chr5_4:65911313-65911332 | Msa0865240:CDS | 45.0% |
| ACATGAGATCTCACCCTGAA+AGG | - | chr5_4:65911434-65911453 | Msa0865240:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | - | chr5_4:65911435-65911454 | Msa0865240:CDS | 45.0% | |
| ! | GAGGGGTATGAACCCTAATA+AGG | - | chr5_4:65911462-65911481 | Msa0865240:CDS | 45.0% |
| ! | ACTCGAACGACCTCTTTTAC+CGG | + | chr5_4:65911605-65911624 | None:intergenic | 45.0% |
| CCAACAAGACCACTAGTACT+AGG | + | chr5_4:65911739-65911758 | None:intergenic | 45.0% | |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | - | chr5_4:65911736-65911755 | Msa0865240:intron | 45.0% |
| !! | TGATGGTGGTAGGATACATC+AGG | - | chr5_4:65911004-65911023 | Msa0865240:CDS | 45.0% |
| AGGTGTGGAAAAGGATTAGG+TGG | - | chr5_4:65911274-65911293 | Msa0865240:CDS | 45.0% | |
| CTTTCCCTAGAGCTTGACTA+TGG | + | chr5_4:65911312-65911331 | None:intergenic | 45.0% | |
| !! | TAGTCAAGCTCTAGGGAAAG+AGG | - | chr5_4:65911312-65911331 | Msa0865240:CDS | 45.0% |
| !! | AGTCAAGCTCTAGGGAAAGA+GGG | - | chr5_4:65911313-65911332 | Msa0865240:CDS | 45.0% |
| ACATGAGATCTCACCCTGAA+AGG | - | chr5_4:65911434-65911453 | Msa0865240:CDS | 45.0% | |
| CATGAGATCTCACCCTGAAA+GGG | - | chr5_4:65911435-65911454 | Msa0865240:CDS | 45.0% | |
| ! | GAGGGGTATGAACCCTAATA+AGG | - | chr5_4:65911462-65911481 | Msa0865240:CDS | 45.0% |
| ! | ACTCGAACGACCTCTTTTAC+CGG | + | chr5_4:65911605-65911624 | None:intergenic | 45.0% |
| CCAACAAGACCACTAGTACT+AGG | + | chr5_4:65911739-65911758 | None:intergenic | 45.0% | |
| !! | CCTAGTACTAGTGGTCTTGT+TGG | - | chr5_4:65911736-65911755 | Msa0865240:intron | 45.0% |
| !! | ATAAAGAATATTAAATATAA+AGG | + | chr5_4:65911045-65911064 | None:intergenic | 5.0% |
| !! | ATAAAGAATATTAAATATAA+AGG | + | chr5_4:65911045-65911064 | None:intergenic | 5.0% |
| AGAGGGTGAGTCGAAAGCAA+AGG | - | chr5_4:65911330-65911349 | Msa0865240:CDS | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | - | chr5_4:65911440-65911459 | Msa0865240:CDS | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | - | chr5_4:65911444-65911463 | Msa0865240:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | + | chr5_4:65911450-65911469 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | + | chr5_4:65911451-65911470 | None:intergenic | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | - | chr5_4:65911604-65911623 | Msa0865240:CDS | 50.0% | |
| AGAGGGTGAGTCGAAAGCAA+AGG | - | chr5_4:65911330-65911349 | Msa0865240:CDS | 50.0% | |
| GATCTCACCCTGAAAGGGAA+TGG | - | chr5_4:65911440-65911459 | Msa0865240:CDS | 50.0% | |
| TCACCCTGAAAGGGAATGGA+GGG | - | chr5_4:65911444-65911463 | Msa0865240:CDS | 50.0% | |
| TACCCCTCCATTCCCTTTCA+GGG | + | chr5_4:65911450-65911469 | None:intergenic | 50.0% | |
| ATACCCCTCCATTCCCTTTC+AGG | + | chr5_4:65911451-65911470 | None:intergenic | 50.0% | |
| GGTAAAAGAGGTCGTTCGAG+TGG | - | chr5_4:65911604-65911623 | Msa0865240:CDS | 50.0% | |
| CTCACCCTGAAAGGGAATGG+AGG | - | chr5_4:65911443-65911462 | Msa0865240:CDS | 55.0% | |
| CACCCTGAAAGGGAATGGAG+GGG | - | chr5_4:65911445-65911464 | Msa0865240:CDS | 55.0% | |
| CTCACCCTGAAAGGGAATGG+AGG | - | chr5_4:65911443-65911462 | Msa0865240:CDS | 55.0% | |
| CACCCTGAAAGGGAATGGAG+GGG | - | chr5_4:65911445-65911464 | Msa0865240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65910972 | 65911867 | 65910972 | ID=Msa0865240;Name=Msa0865240 |
| chr5_4 | mRNA | 65910972 | 65911867 | 65910972 | ID=Msa0865240-mRNA-1;Parent=Msa0865240;Name=Msa0865240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|268 |
| chr5_4 | exon | 65911814 | 65911867 | 65911814 | ID=Msa0865240-mRNA-1:exon:20840;Parent=Msa0865240-mRNA-1 |
| chr5_4 | exon | 65910972 | 65911724 | 65910972 | ID=Msa0865240-mRNA-1:exon:20839;Parent=Msa0865240-mRNA-1 |
| chr5_4 | CDS | 65911814 | 65911867 | 65911814 | ID=Msa0865240-mRNA-1:cds;Parent=Msa0865240-mRNA-1 |
| chr5_4 | CDS | 65910972 | 65911724 | 65910972 | ID=Msa0865240-mRNA-1:cds;Parent=Msa0865240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
