Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868470 | KEH24770.1 | 80.606 | 165 | 11 | 1 | 37 | 201 | 1 | 144 | 5.86e-74 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868470 | sp|Q9STS6|LBD27_ARATH | 54.808 | 104 | 46 | 1 | 9 | 112 | 36 | 138 | 4.27e-32 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868470 | A0A072UG64 | 80.606 | 165 | 11 | 1 | 37 | 201 | 1 | 144 | 2.80e-74 | 231 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0868470 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868470 | MtrunA17_Chr6g0449311 | 80.606 | 165 | 11 | 1 | 37 | 201 | 1 | 144 | 5.39e-78 | 231 |
| Msa0868470 | MtrunA17_Chr6g0452661 | 55.959 | 193 | 69 | 4 | 1 | 190 | 1 | 180 | 1.03e-63 | 199 |
| Msa0868470 | MtrunA17_Chr5g0439111 | 64.865 | 185 | 50 | 6 | 1 | 179 | 1 | 176 | 1.97e-62 | 195 |
| Msa0868470 | MtrunA17_Chr4g0055441 | 61.151 | 139 | 40 | 3 | 10 | 145 | 3 | 130 | 4.09e-51 | 164 |
| Msa0868470 | MtrunA17_Chr6g0452691 | 54.730 | 148 | 54 | 3 | 1 | 142 | 1 | 141 | 6.26e-49 | 159 |
| Msa0868470 | MtrunA17_Chr6g0452671 | 55.634 | 142 | 56 | 3 | 1 | 140 | 1 | 137 | 3.08e-45 | 150 |
| Msa0868470 | MtrunA17_Chr4g0059901 | 50.467 | 107 | 52 | 1 | 8 | 114 | 9 | 114 | 9.89e-31 | 114 |
| Msa0868470 | MtrunA17_Chr8g0342351 | 50.467 | 107 | 52 | 1 | 8 | 114 | 11 | 116 | 1.83e-28 | 108 |
| Msa0868470 | MtrunA17_Chr4g0058651 | 38.060 | 134 | 71 | 2 | 7 | 140 | 9 | 130 | 6.29e-25 | 97.4 |
| Msa0868470 | MtrunA17_Chr7g0227511 | 34.161 | 161 | 92 | 4 | 7 | 162 | 9 | 160 | 6.46e-25 | 97.1 |
| Msa0868470 | MtrunA17_Chr2g0330201 | 43.119 | 109 | 61 | 1 | 8 | 116 | 18 | 125 | 1.45e-23 | 96.7 |
| Msa0868470 | MtrunA17_Chr3g0097221 | 42.857 | 112 | 63 | 1 | 7 | 118 | 5 | 115 | 2.69e-23 | 95.5 |
| Msa0868470 | MtrunA17_Chr8g0353981 | 48.193 | 83 | 42 | 1 | 7 | 89 | 5 | 86 | 2.79e-23 | 94.4 |
| Msa0868470 | MtrunA17_Chr5g0402611 | 42.857 | 105 | 59 | 1 | 7 | 111 | 6 | 109 | 5.68e-23 | 95.1 |
| Msa0868470 | MtrunA17_Chr3g0117121 | 42.857 | 98 | 55 | 1 | 7 | 104 | 8 | 104 | 7.91e-23 | 92.0 |
| Msa0868470 | MtrunA17_Chr3g0115431 | 42.157 | 102 | 58 | 1 | 10 | 111 | 10 | 110 | 2.71e-22 | 91.3 |
| Msa0868470 | MtrunA17_Chr6g0449641 | 40.816 | 98 | 57 | 1 | 7 | 104 | 7 | 103 | 9.89e-22 | 87.8 |
| Msa0868470 | MtrunA17_Chr5g0444351 | 31.469 | 143 | 94 | 2 | 10 | 152 | 6 | 144 | 1.10e-21 | 87.8 |
| Msa0868470 | MtrunA17_Chr4g0043421 | 36.641 | 131 | 81 | 2 | 10 | 140 | 16 | 144 | 2.69e-21 | 87.4 |
| Msa0868470 | MtrunA17_Chr7g0225111 | 37.273 | 110 | 68 | 1 | 10 | 119 | 6 | 114 | 1.47e-20 | 84.0 |
| Msa0868470 | MtrunA17_Chr2g0311601 | 35.833 | 120 | 70 | 2 | 10 | 129 | 14 | 126 | 1.70e-20 | 85.1 |
| Msa0868470 | MtrunA17_Chr6g0449651 | 39.796 | 98 | 58 | 1 | 7 | 104 | 65 | 161 | 3.22e-20 | 85.5 |
| Msa0868470 | MtrunA17_Chr5g0437401 | 35.780 | 109 | 69 | 1 | 5 | 113 | 7 | 114 | 7.46e-20 | 84.0 |
| Msa0868470 | MtrunA17_Chr5g0437571 | 36.207 | 116 | 72 | 2 | 7 | 122 | 4 | 117 | 7.69e-20 | 83.6 |
| Msa0868470 | MtrunA17_Chr4g0030001 | 39.655 | 116 | 67 | 3 | 10 | 124 | 25 | 138 | 9.96e-20 | 84.0 |
| Msa0868470 | MtrunA17_Chr5g0438091 | 32.331 | 133 | 88 | 2 | 10 | 142 | 40 | 170 | 2.05e-19 | 83.2 |
| Msa0868470 | MtrunA17_Chr8g0374591 | 38.462 | 104 | 63 | 1 | 8 | 111 | 7 | 109 | 3.42e-19 | 80.9 |
| Msa0868470 | MtrunA17_Chr3g0106101 | 36.036 | 111 | 69 | 2 | 10 | 120 | 8 | 116 | 6.52e-19 | 81.3 |
| Msa0868470 | MtrunA17_Chr8g0374601 | 38.462 | 104 | 63 | 1 | 8 | 111 | 25 | 127 | 4.95e-18 | 81.3 |
| Msa0868470 | MtrunA17_Chr3g0113891 | 36.538 | 104 | 65 | 1 | 5 | 108 | 10 | 112 | 6.50e-18 | 79.0 |
| Msa0868470 | MtrunA17_Chr5g0432451 | 32.576 | 132 | 84 | 2 | 10 | 141 | 44 | 170 | 1.69e-17 | 78.6 |
| Msa0868470 | MtrunA17_Chr1g0200201 | 35.606 | 132 | 73 | 4 | 10 | 132 | 73 | 201 | 2.06e-17 | 78.6 |
| Msa0868470 | MtrunA17_Chr3g0114061 | 38.462 | 104 | 62 | 2 | 10 | 113 | 9 | 110 | 2.96e-17 | 76.3 |
| Msa0868470 | MtrunA17_Chr4g0040831 | 31.783 | 129 | 79 | 3 | 8 | 132 | 14 | 137 | 6.26e-17 | 76.6 |
| Msa0868470 | MtrunA17_Chr3g0129071 | 35.714 | 98 | 62 | 1 | 10 | 107 | 48 | 144 | 8.22e-17 | 77.0 |
| Msa0868470 | MtrunA17_Chr7g0260971 | 38.835 | 103 | 61 | 2 | 10 | 111 | 15 | 116 | 3.91e-16 | 74.7 |
| Msa0868470 | MtrunA17_Chr8g0351721 | 34.259 | 108 | 69 | 2 | 5 | 111 | 14 | 120 | 2.22e-14 | 70.1 |
| Msa0868470 | MtrunA17_Chr6g0460951 | 33.333 | 102 | 66 | 2 | 10 | 110 | 41 | 141 | 1.68e-13 | 67.8 |
| Msa0868470 | MtrunA17_Chr7g0245871 | 35.354 | 99 | 62 | 2 | 10 | 107 | 28 | 125 | 1.78e-13 | 67.8 |
| Msa0868470 | MtrunA17_Chr8g0351701 | 33.010 | 103 | 67 | 2 | 10 | 111 | 24 | 125 | 2.88e-13 | 67.0 |
| Msa0868470 | MtrunA17_Chr4g0046201 | 36.364 | 88 | 55 | 1 | 9 | 96 | 6 | 92 | 1.89e-12 | 65.5 |
| Msa0868470 | MtrunA17_Chr6g0460941 | 35.227 | 88 | 55 | 2 | 10 | 96 | 8 | 94 | 2.35e-12 | 61.6 |
| Msa0868470 | MtrunA17_Chr8g0374581 | 34.615 | 104 | 66 | 2 | 8 | 110 | 7 | 109 | 7.85e-12 | 63.2 |
| Msa0868470 | MtrunA17_Chr2g0326041 | 50.000 | 48 | 24 | 0 | 10 | 57 | 34 | 81 | 7.13e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868470 | AT3G47870.1 | 54.808 | 104 | 46 | 1 | 9 | 112 | 36 | 138 | 4.34e-33 | 122 |
| Msa0868470 | AT3G13850.1 | 42.568 | 148 | 80 | 3 | 8 | 152 | 35 | 180 | 2.09e-28 | 108 |
| Msa0868470 | AT5G63090.4 | 32.609 | 184 | 116 | 4 | 7 | 188 | 9 | 186 | 4.36e-23 | 92.8 |
| Msa0868470 | AT5G63090.3 | 32.609 | 184 | 116 | 4 | 7 | 188 | 9 | 186 | 4.36e-23 | 92.8 |
| Msa0868470 | AT5G63090.2 | 32.609 | 184 | 116 | 4 | 7 | 188 | 9 | 186 | 4.36e-23 | 92.8 |
| Msa0868470 | AT5G63090.1 | 32.609 | 184 | 116 | 4 | 7 | 188 | 9 | 186 | 4.36e-23 | 92.8 |
| Msa0868470 | AT3G27650.1 | 41.000 | 100 | 58 | 1 | 7 | 106 | 37 | 135 | 1.58e-22 | 90.9 |
| Msa0868470 | AT1G65620.1 | 45.783 | 83 | 44 | 1 | 7 | 89 | 7 | 88 | 2.45e-21 | 88.6 |
| Msa0868470 | AT1G65620.4 | 45.783 | 83 | 44 | 1 | 7 | 89 | 7 | 88 | 2.45e-21 | 88.6 |
| Msa0868470 | AT1G65620.3 | 45.783 | 83 | 44 | 1 | 7 | 89 | 7 | 88 | 2.45e-21 | 88.6 |
| Msa0868470 | AT1G65620.5 | 45.783 | 83 | 44 | 1 | 7 | 89 | 7 | 88 | 2.45e-21 | 88.6 |
| Msa0868470 | AT1G65620.2 | 45.783 | 83 | 44 | 1 | 7 | 89 | 7 | 88 | 2.45e-21 | 88.6 |
| Msa0868470 | AT5G66870.1 | 40.196 | 102 | 60 | 1 | 10 | 111 | 8 | 108 | 8.52e-21 | 89.7 |
| Msa0868470 | AT3G26660.1 | 38.261 | 115 | 68 | 2 | 8 | 120 | 4 | 117 | 9.37e-21 | 85.1 |
| Msa0868470 | AT1G31320.1 | 43.158 | 95 | 50 | 2 | 5 | 96 | 6 | 99 | 3.30e-20 | 85.1 |
| Msa0868470 | AT1G72980.1 | 40.179 | 112 | 65 | 2 | 9 | 119 | 13 | 123 | 2.40e-19 | 83.6 |
| Msa0868470 | AT3G26620.1 | 37.500 | 112 | 67 | 2 | 8 | 117 | 4 | 114 | 2.62e-19 | 81.3 |
| Msa0868470 | AT1G07900.1 | 41.489 | 94 | 54 | 1 | 10 | 103 | 34 | 126 | 1.41e-18 | 81.3 |
| Msa0868470 | AT2G28500.1 | 37.391 | 115 | 70 | 2 | 10 | 124 | 56 | 168 | 1.54e-17 | 79.3 |
| Msa0868470 | AT2G30130.1 | 38.462 | 104 | 62 | 2 | 10 | 113 | 9 | 110 | 1.93e-17 | 78.2 |
| Msa0868470 | AT2G23660.2 | 39.604 | 101 | 60 | 1 | 10 | 110 | 6 | 105 | 3.19e-17 | 79.7 |
| Msa0868470 | AT2G23660.3 | 39.604 | 101 | 60 | 1 | 10 | 110 | 6 | 105 | 3.19e-17 | 79.7 |
| Msa0868470 | AT2G23660.1 | 39.604 | 101 | 60 | 1 | 10 | 110 | 6 | 105 | 3.19e-17 | 79.7 |
| Msa0868470 | AT2G30340.2 | 36.735 | 98 | 61 | 1 | 10 | 107 | 54 | 150 | 6.79e-17 | 78.2 |
| Msa0868470 | AT2G30340.1 | 36.735 | 98 | 61 | 1 | 10 | 107 | 53 | 149 | 8.02e-17 | 77.8 |
| Msa0868470 | AT3G11090.1 | 35.354 | 99 | 63 | 1 | 5 | 103 | 7 | 104 | 8.52e-17 | 75.9 |
| Msa0868470 | AT2G40470.2 | 33.094 | 139 | 83 | 4 | 10 | 148 | 21 | 149 | 1.59e-16 | 75.9 |
| Msa0868470 | AT2G40470.1 | 33.094 | 139 | 83 | 4 | 10 | 148 | 46 | 174 | 2.16e-16 | 75.9 |
| Msa0868470 | AT1G16530.1 | 35.043 | 117 | 64 | 4 | 4 | 109 | 6 | 121 | 3.40e-16 | 73.9 |
| Msa0868470 | AT5G15060.1 | 44.595 | 74 | 40 | 1 | 10 | 82 | 18 | 91 | 1.78e-15 | 71.6 |
| Msa0868470 | AT3G50510.1 | 37.143 | 105 | 64 | 2 | 10 | 113 | 13 | 116 | 8.56e-15 | 71.2 |
| Msa0868470 | AT3G50510.2 | 37.143 | 105 | 64 | 2 | 10 | 113 | 13 | 116 | 8.56e-15 | 71.2 |
| Msa0868470 | AT4G00210.1 | 33.333 | 138 | 84 | 4 | 10 | 145 | 12 | 143 | 4.77e-14 | 69.3 |
| Msa0868470 | AT2G19820.1 | 33.333 | 99 | 63 | 1 | 1 | 96 | 1 | 99 | 1.06e-13 | 66.2 |
| Msa0868470 | AT1G06280.1 | 36.170 | 94 | 55 | 3 | 8 | 101 | 23 | 111 | 3.33e-13 | 67.0 |
| Msa0868470 | AT4G00220.1 | 33.333 | 105 | 68 | 2 | 12 | 115 | 20 | 123 | 3.84e-13 | 67.0 |
| Msa0868470 | AT2G42430.1 | 28.205 | 156 | 104 | 3 | 10 | 158 | 16 | 170 | 4.97e-13 | 67.0 |
| Msa0868470 | AT2G45420.1 | 32.381 | 105 | 69 | 2 | 12 | 115 | 40 | 143 | 1.63e-12 | 65.9 |
| Msa0868470 | AT3G03760.1 | 34.314 | 102 | 65 | 2 | 10 | 110 | 52 | 152 | 5.94e-12 | 64.3 |
| Msa0868470 | AT5G35900.1 | 28.155 | 103 | 73 | 1 | 9 | 111 | 5 | 106 | 1.73e-11 | 62.0 |
Find 30 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCAACATTGCTAGATAT+TGG | 0.233878 | 6_1:+1977985 | Msa0868460:intron |
| TCACCAACATTGTTAAATAT+TGG | 0.234385 | 6_1:+1978261 | Msa0868460:intron |
| TCACTATTGTGATAATAATA+AGG | 0.243500 | 6_1:+1978234 | Msa0868460:intron |
| CTTTCTTCTTTGATATTTGC+AGG | 0.243555 | 6_1:+1978644 | Msa0868460:intron |
| GTTAAGAATACTCAAGTTCT+TGG | 0.244885 | 6_1:-1978144 | Msa0868470:CDS |
| TGGATGTCTTGGTCTTATTA+TGG | 0.281895 | 6_1:-1978430 | Msa0868470:CDS |
| GGTTTATCGGCTGGAAAATA+AGG | 0.296290 | 6_1:+1978597 | Msa0868460:intron |
| GCCAATGCTCATCGTTTGTT+TGG | 0.347008 | 6_1:-1978564 | Msa0868470:CDS |
| TAAGGAGCTAAAGGGAAATC+TGG | 0.373984 | 6_1:+1978615 | Msa0868460:intron |
| ACCACTAGTTCTCAAATTCC+AGG | 0.434386 | 6_1:-1978015 | Msa0868470:CDS |
| ATTCCAATATTTAACAATGT+TGG | 0.448330 | 6_1:-1978264 | Msa0868470:CDS |
| TCTTCTACATTTCTCTTCAT+CGG | 0.464845 | 6_1:-1978319 | Msa0868470:CDS |
| GGAATTGAAGAACTAGTAGA+AGG | 0.471090 | 6_1:+1978282 | Msa0868460:intron |
| TTCCCAAGTCATGGATGTCT+TGG | 0.482571 | 6_1:-1978441 | Msa0868470:CDS |
| GCTGGAAAATAAGGAGCTAA+AGG | 0.488184 | 6_1:+1978606 | Msa0868460:intron |
| CTGGAAAATAAGGAGCTAAA+GGG | 0.491954 | 6_1:+1978607 | Msa0868460:intron |
| TCTTGATATGATAAAGTATG+AGG | 0.492253 | 6_1:-1978118 | Msa0868470:CDS |
| CTAGATATTGGATTAATACC+TGG | 0.493908 | 6_1:+1977997 | Msa0868460:intron |
| GAATGATCCATTGAAAAGTA+AGG | 0.496518 | 6_1:+1978048 | Msa0868460:intron |
| AATCCAATATCTAGCAATGT+TGG | 0.514330 | 6_1:-1977988 | Msa0868470:CDS |
| AGACCAAGACATCCATGACT+TGG | 0.541471 | 6_1:+1978438 | Msa0868460:intron |
| ACCAAACAAACGATGAGCAT+TGG | 0.553402 | 6_1:+1978563 | Msa0868460:intron |
| CGTGCAAGATTCCCAAGTCA+TGG | 0.565788 | 6_1:-1978450 | Msa0868470:CDS |
| GTAAATTTGTTAACATCGTG+AGG | 0.570877 | 6_1:+1977954 | Msa0868460:intron |
| ACCTGGAATTTGAGAACTAG+TGG | 0.587717 | 6_1:+1978014 | Msa0868460:intron |
| GACCAAGACATCCATGACTT+GGG | 0.599785 | 6_1:+1978439 | Msa0868460:intron |
| TTTGTTTGGTATTTCCAACA+TGG | 0.612102 | 6_1:-1978550 | Msa0868470:CDS |
| TGAGTATTCTTAACATCACG+AGG | 0.634892 | 6_1:+1978153 | Msa0868460:intron |
| GGAATTTGAGAACTAGTGGT+AGG | 0.664884 | 6_1:+1978018 | Msa0868460:intron |
| GAGTATTCTTAACATCACGA+GGG | 0.718609 | 6_1:+1978154 | Msa0868460:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATCGATTATTTTTGAAT+TGG | - | chr6_1:1978163-1978182 | Msa0868470:CDS | 20.0% |
| !! | ATTCCAATATTTAACAATGT+TGG | - | chr6_1:1978377-1978396 | Msa0868470:CDS | 20.0% |
| !! | TCACTATTGTGATAATAATA+AGG | + | chr6_1:1978410-1978429 | Msa0868460:intron | 20.0% |
| ! | TCACCAACATTGTTAAATAT+TGG | + | chr6_1:1978383-1978402 | Msa0868460:intron | 25.0% |
| ! | TCTTGATATGATAAAGTATG+AGG | - | chr6_1:1978523-1978542 | Msa0868470:CDS | 25.0% |
| !!! | TTTTCTACCTTACTTTTCAA+TGG | - | chr6_1:1978586-1978605 | Msa0868470:CDS | 25.0% |
| GGATATTCACAGAAAAAACA+AGG | - | chr6_1:1977965-1977984 | Msa0868470:CDS | 30.0% | |
| CTTTCTTCTTTGATATTTGC+AGG | + | chr6_1:1978000-1978019 | Msa0868460:intron | 30.0% | |
| TTTGTTTGGTATTTCCAACA+TGG | - | chr6_1:1978091-1978110 | Msa0868470:CDS | 30.0% | |
| TCTTCTACATTTCTCTTCAT+CGG | - | chr6_1:1978322-1978341 | Msa0868470:CDS | 30.0% | |
| GTTAAGAATACTCAAGTTCT+TGG | - | chr6_1:1978497-1978516 | Msa0868470:CDS | 30.0% | |
| GAATGATCCATTGAAAAGTA+AGG | + | chr6_1:1978596-1978615 | Msa0868460:intron | 30.0% | |
| CTAGATATTGGATTAATACC+TGG | + | chr6_1:1978647-1978666 | Msa0868460:intron | 30.0% | |
| AATCCAATATCTAGCAATGT+TGG | - | chr6_1:1978653-1978672 | Msa0868470:CDS | 30.0% | |
| TTACCAACATTGCTAGATAT+TGG | + | chr6_1:1978659-1978678 | Msa0868460:intron | 30.0% | |
| CTGGAAAATAAGGAGCTAAA+GGG | + | chr6_1:1978037-1978056 | Msa0868460:intron | 35.0% | |
| !! | TGGATGTCTTGGTCTTATTA+TGG | - | chr6_1:1978211-1978230 | Msa0868470:CDS | 35.0% |
| GGAATTGAAGAACTAGTAGA+AGG | + | chr6_1:1978362-1978381 | Msa0868460:intron | 35.0% | |
| GAGTATTCTTAACATCACGA+GGG | + | chr6_1:1978490-1978509 | Msa0868460:intron | 35.0% | |
| TGAGTATTCTTAACATCACG+AGG | + | chr6_1:1978491-1978510 | Msa0868460:intron | 35.0% | |
| TAAGGAGCTAAAGGGAAATC+TGG | + | chr6_1:1978029-1978048 | Msa0868460:intron | 40.0% | |
| GCTGGAAAATAAGGAGCTAA+AGG | + | chr6_1:1978038-1978057 | Msa0868460:intron | 40.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | + | chr6_1:1978047-1978066 | Msa0868460:intron | 40.0% |
| !!! | AGCATTTTTGGTTTATCGGC+TGG | + | chr6_1:1978056-1978075 | Msa0868460:intron | 40.0% |
| !!! | GGCGAGCATTTTTGGTTTAT+CGG | + | chr6_1:1978060-1978079 | Msa0868460:intron | 40.0% |
| ACCAAACAAACGATGAGCAT+TGG | + | chr6_1:1978081-1978100 | Msa0868460:intron | 40.0% | |
| ! | TTTTAGCGTCTTCACCATGT+TGG | + | chr6_1:1978108-1978127 | Msa0868460:intron | 40.0% |
| GGAATTTGAGAACTAGTGGT+AGG | + | chr6_1:1978626-1978645 | Msa0868460:intron | 40.0% | |
| ! | ACCACTAGTTCTCAAATTCC+AGG | - | chr6_1:1978626-1978645 | Msa0868470:CDS | 40.0% |
| ACCTGGAATTTGAGAACTAG+TGG | + | chr6_1:1978630-1978649 | Msa0868460:intron | 40.0% | |
| !!! | TGAGCATTGGCGAGCATTTT+TGG | + | chr6_1:1978068-1978087 | Msa0868460:intron | 45.0% |
| GCCAATGCTCATCGTTTGTT+TGG | - | chr6_1:1978077-1978096 | Msa0868470:CDS | 45.0% | |
| TTCCCAAGTCATGGATGTCT+TGG | - | chr6_1:1978200-1978219 | Msa0868470:CDS | 45.0% | |
| GACCAAGACATCCATGACTT+GGG | + | chr6_1:1978205-1978224 | Msa0868460:intron | 45.0% | |
| AGACCAAGACATCCATGACT+TGG | + | chr6_1:1978206-1978225 | Msa0868460:intron | 45.0% | |
| CGTGCAAGATTCCCAAGTCA+TGG | - | chr6_1:1978191-1978210 | Msa0868470:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1977963 | 1978700 | 1977963 | ID=Msa0868470;Name=Msa0868470 |
| chr6_1 | mRNA | 1977963 | 1978700 | 1977963 | ID=Msa0868470-mRNA-1;Parent=Msa0868470;Name=Msa0868470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|245 |
| chr6_1 | exon | 1977963 | 1978700 | 1977963 | ID=Msa0868470-mRNA-1:exon:583;Parent=Msa0868470-mRNA-1 |
| chr6_1 | CDS | 1977963 | 1978700 | 1977963 | ID=Msa0868470-mRNA-1:cds;Parent=Msa0868470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
