AlfalfaGEDB | Msa0868470

M. sativa cultivar zhongmu-4 / Msa0868470

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868470	KEH24770.1	80.606	165	11	1	37	201	1	144	5.86e-74	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868470	sp\|Q9STS6\|LBD27_ARATH	54.808	104	46	1	9	112	36	138	4.27e-32	122

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868470	A0A072UG64	80.606	165	11	1	37	201	1	144	2.80e-74	231

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TFs/TRs:

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Gene ID	Type	Classification
Msa0868470	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868470	MtrunA17_Chr6g0449311	80.606	165	11	1	37	201	1	144	5.39e-78	231
Msa0868470	MtrunA17_Chr6g0452661	55.959	193	69	4	1	190	1	180	1.03e-63	199
Msa0868470	MtrunA17_Chr5g0439111	64.865	185	50	6	1	179	1	176	1.97e-62	195
Msa0868470	MtrunA17_Chr4g0055441	61.151	139	40	3	10	145	3	130	4.09e-51	164
Msa0868470	MtrunA17_Chr6g0452691	54.730	148	54	3	1	142	1	141	6.26e-49	159
Msa0868470	MtrunA17_Chr6g0452671	55.634	142	56	3	1	140	1	137	3.08e-45	150
Msa0868470	MtrunA17_Chr4g0059901	50.467	107	52	1	8	114	9	114	9.89e-31	114
Msa0868470	MtrunA17_Chr8g0342351	50.467	107	52	1	8	114	11	116	1.83e-28	108
Msa0868470	MtrunA17_Chr4g0058651	38.060	134	71	2	7	140	9	130	6.29e-25	97.4
Msa0868470	MtrunA17_Chr7g0227511	34.161	161	92	4	7	162	9	160	6.46e-25	97.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868470	AT3G47870.1	54.808	104	46	1	9	112	36	138	4.34e-33	122
Msa0868470	AT3G13850.1	42.568	148	80	3	8	152	35	180	2.09e-28	108
Msa0868470	AT5G63090.4	32.609	184	116	4	7	188	9	186	4.36e-23	92.8
Msa0868470	AT5G63090.3	32.609	184	116	4	7	188	9	186	4.36e-23	92.8
Msa0868470	AT5G63090.2	32.609	184	116	4	7	188	9	186	4.36e-23	92.8
Msa0868470	AT5G63090.1	32.609	184	116	4	7	188	9	186	4.36e-23	92.8
Msa0868470	AT3G27650.1	41.000	100	58	1	7	106	37	135	1.58e-22	90.9
Msa0868470	AT1G65620.1	45.783	83	44	1	7	89	7	88	2.45e-21	88.6
Msa0868470	AT1G65620.4	45.783	83	44	1	7	89	7	88	2.45e-21	88.6
Msa0868470	AT1G65620.3	45.783	83	44	1	7	89	7	88	2.45e-21	88.6

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Find 30 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCCAATATCTAGCAATGT+TGG	0.514330	6_1:-1977988	Msa0868470:CDS
ACCAAACAAACGATGAGCAT+TGG	0.553402	6_1:+1978563	Msa0868460:intron
ACCACTAGTTCTCAAATTCC+AGG	0.434386	6_1:-1978015	Msa0868470:CDS
ACCTGGAATTTGAGAACTAG+TGG	0.587717	6_1:+1978014	Msa0868460:intron
AGACCAAGACATCCATGACT+TGG	0.541471	6_1:+1978438	Msa0868460:intron
ATTCCAATATTTAACAATGT+TGG	0.448330	6_1:-1978264	Msa0868470:CDS
CGTGCAAGATTCCCAAGTCA+TGG	0.565788	6_1:-1978450	Msa0868470:CDS
CTAGATATTGGATTAATACC+TGG	0.493908	6_1:+1977997	Msa0868460:intron
CTGGAAAATAAGGAGCTAAA+GGG	0.491954	6_1:+1978607	Msa0868460:intron
CTTTCTTCTTTGATATTTGC+AGG	0.243555	6_1:+1978644	Msa0868460:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATATTCACAGAAAAAACA+AGG	-	chr6_1:1977965-1977984	Msa0868470:CDS	30.0%
CTTTCTTCTTTGATATTTGC+AGG	+	chr6_1:1978000-1978019	Msa0868460:intron	30.0%
TTTGTTTGGTATTTCCAACA+TGG	-	chr6_1:1978091-1978110	Msa0868470:CDS	30.0%
TCTTCTACATTTCTCTTCAT+CGG	-	chr6_1:1978322-1978341	Msa0868470:CDS	30.0%
GTTAAGAATACTCAAGTTCT+TGG	-	chr6_1:1978497-1978516	Msa0868470:CDS	30.0%
GAATGATCCATTGAAAAGTA+AGG	+	chr6_1:1978596-1978615	Msa0868460:intron	30.0%
CTAGATATTGGATTAATACC+TGG	+	chr6_1:1978647-1978666	Msa0868460:intron	30.0%
AATCCAATATCTAGCAATGT+TGG	-	chr6_1:1978653-1978672	Msa0868470:CDS	30.0%
TTACCAACATTGCTAGATAT+TGG	+	chr6_1:1978659-1978678	Msa0868460:intron	30.0%
CTGGAAAATAAGGAGCTAAA+GGG	+	chr6_1:1978037-1978056	Msa0868460:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	1977963	1978700	1977963	ID=Msa0868470;Name=Msa0868470
chr6_1	mRNA	1977963	1978700	1977963	ID=Msa0868470-mRNA-1;Parent=Msa0868470;Name=Msa0868470-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|245
chr6_1	exon	1977963	1978700	1977963	ID=Msa0868470-mRNA-1:exon:583;Parent=Msa0868470-mRNA-1
chr6_1	CDS	1977963	1978700	1977963	ID=Msa0868470-mRNA-1:cds;Parent=Msa0868470-mRNA-1

Gene Sequence

>Msa0868470

ATGGATATTCACAGAAAAAACAAGGCATGTGCAGCCTGCAAATATCAAAGAAGAAAGTGTACTCCAGATTTCCCTTTAGCTCCTTATTTTCCAGCCGATAAACCAAAAATGCTCGCCAATGCTCATCGTTTGTTTGGTATTTCCAACATGGTGAAGACGCTAAAATCTATTGATGATGATTATCATAAAGATGAAGCAATGAAATCGATTATTTTTGAATTGGAAATGCGTGCAAGATTCCCAAGTCATGGATGTCTTGGTCTTATTATGGAGTATCAAGATATGATAATTGAGTCTATGAAAGAGTTAGATCATGTAAAACAGTTACTAAGTTTGTGTAAGCTATCACAACAACAAAATCTTCTACATTTCTCTTCATCGGATCATTCTTCAGTACCTTCTACTAGTTCTTCAATTCCAATATTTAACAATGTTGGTGATGTTCCTTATTATTATCACAATAGTGAAAATAATAATGATACTATGATGAGATCATCTTCTTCTTCTTATATTAATGACATCATCCCTCGTGATGTTAAGAATACTCAAGTTCTTGGAAATCTTGATATGATAAAGTATGAGGAAGAGTTCGATTATGTAAGAAATAATCTACAGCAGCAAAATTTTCTACCTTACTTTTCAATGGATCATTCTTCTGTACCTACCACTAGTTCTCAAATTCCAGGTATTAATCCAATATCTAGCAATGTTGGTAACATTCATTCCTCACGATGTTAA

Protein sequence

>Msa0868470

MDIHRKNKACAACKYQRRKCTPDFPLAPYFPADKPKMLANAHRLFGISNMVKTLKSIDDDYHKDEAMKSIIFELEMRARFPSHGCLGLIMEYQDMIIESMKELDHVKQLLSLCKLSQQQNLLHFSSSDHSSVPSTSSSIPIFNNVGDVPYYYHNSENNNDTMMRSSSSSYINDIIPRDVKNTQVLGNLDMIKYEEEFDYVRNNLQQQNFLPYFSMDHSSVPTTSSQIPGINPISSNVGNIHSSRC*