AlfalfaGEDB | Msa0868730

M. sativa cultivar zhongmu-4 / Msa0868730

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868730	XP_003618147.1	99.310	145	1	0	1	145	1	145	1.50e-102	300

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868730	sp\|Q8L8Q3\|LBD25_ARATH	76.423	123	25	1	3	121	33	155	2.43e-66	201

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868730	G7KQ00	99.310	145	1	0	1	145	1	145	7.17e-103	300

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TFs/TRs:

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Gene ID	Type	Classification
Msa0868730	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868730	MtrunA17_Chr6g0449641	99.310	145	1	0	1	145	1	145	1.38e-106	300
Msa0868730	MtrunA17_Chr6g0449651	92.143	140	11	0	1	140	59	198	9.60e-95	272
Msa0868730	MtrunA17_Chr7g0227511	68.675	166	32	4	2	149	4	167	7.45e-72	213
Msa0868730	MtrunA17_Chr3g0117121	64.151	159	30	2	1	132	1	159	8.67e-66	198
Msa0868730	MtrunA17_Chr4g0058651	83.810	105	17	0	7	111	9	113	3.35e-64	194
Msa0868730	MtrunA17_Chr4g0043421	56.522	138	56	3	8	141	14	151	1.11e-49	157
Msa0868730	MtrunA17_Chr2g0311601	61.607	112	42	1	8	118	12	123	2.86e-49	155
Msa0868730	MtrunA17_Chr5g0437571	57.377	122	52	0	7	128	4	125	8.94e-49	154
Msa0868730	MtrunA17_Chr5g0402611	67.290	107	35	0	3	109	2	108	1.21e-48	159
Msa0868730	MtrunA17_Chr8g0353981	69.643	112	32	1	1	112	1	110	6.13e-48	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0868730	AT3G27650.1	76.423	123	25	1	3	121	33	155	2.47e-67	201
Msa0868730	AT5G63090.4	75.591	127	29	1	1	125	1	127	9.81e-65	196
Msa0868730	AT5G63090.3	75.591	127	29	1	1	125	1	127	9.81e-65	196
Msa0868730	AT5G63090.2	75.591	127	29	1	1	125	1	127	9.81e-65	196
Msa0868730	AT5G63090.1	75.591	127	29	1	1	125	1	127	9.81e-65	196
Msa0868730	AT2G30130.1	60.169	118	47	0	7	124	6	123	1.77e-49	157
Msa0868730	AT1G65620.1	66.379	116	39	0	1	116	1	116	2.14e-48	155
Msa0868730	AT1G65620.4	66.379	116	39	0	1	116	1	116	2.14e-48	155
Msa0868730	AT1G65620.3	66.379	116	39	0	1	116	1	116	2.14e-48	155
Msa0868730	AT1G65620.5	66.379	116	39	0	1	116	1	116	2.14e-48	155

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Find 25 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTATGAGGCTCTTCTGG+TGG	0.540828	6_1:-2476642	None:intergenic
AATTTGAGCAATGATTCTTG+TGG	0.553273	6_1:+2476957	Msa0868730:CDS
ACAACTCATTAAGCTTCAAA+AGG	0.501141	6_1:+2476830	Msa0868730:CDS
ACTGTATCTTCTCTTTGATG+AGG	0.567592	6_1:-2476726	None:intergenic
ACTTATGAGGCTCTTCTGGT+GGG	0.610191	6_1:-2476641	None:intergenic
AGAAACTTGCAAGCAGCACA+TGG	0.591215	6_1:-2476576	None:intergenic
AGGATTAAAGATCCAGTGTA+TGG	0.525146	6_1:+2476777	Msa0868730:CDS
ATGATTTAAGCGAATCAAAT+CGG	0.450299	6_1:-2476871	None:intergenic
ATTTGAGCAATGATTCTTGT+GGG	0.463152	6_1:+2476958	Msa0868730:CDS
CATCAAGGTTCTTCTTCTCT+TGG	0.331910	6_1:+2476891	Msa0868730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAACATTTGCAAACTTATG+AGG	-	chr6_1:2476657-2476676	None:intergenic	30.0%
ACAACTCATTAAGCTTCAAA+AGG	+	chr6_1:2476830-2476849	Msa0868730:CDS	30.0%
GAATCATTGCTCAAATTAGA+TGG	-	chr6_1:2476954-2476973	None:intergenic	30.0%
AATTTGAGCAATGATTCTTG+TGG	+	chr6_1:2476957-2476976	Msa0868730:CDS	30.0%
ATTTGAGCAATGATTCTTGT+GGG	+	chr6_1:2476958-2476977	Msa0868730:CDS	30.0%
AAGGTGCAAAAATGCAATCT+TGG	-	chr6_1:2476617-2476636	None:intergenic	35.0%
ACTGTATCTTCTCTTTGATG+AGG	-	chr6_1:2476729-2476748	None:intergenic	35.0%
AGGATTAAAGATCCAGTGTA+TGG	+	chr6_1:2476777-2476796	Msa0868730:CDS	35.0%
TTTGAGCAATGATTCTTGTG+GGG	+	chr6_1:2476959-2476978	Msa0868730:CDS	35.0%
TGGAGAATTTGAGTAGCTTG+AGG	-	chr6_1:2476559-2476578	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	2476552	2477007	2476552	ID=Msa0868730;Name=Msa0868730
chr6_1	mRNA	2476552	2477007	2476552	ID=Msa0868730-mRNA-1;Parent=Msa0868730;Name=Msa0868730-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|151
chr6_1	exon	2476552	2477007	2476552	ID=Msa0868730-mRNA-1:exon:708;Parent=Msa0868730-mRNA-1
chr6_1	CDS	2476552	2477007	2476552	ID=Msa0868730-mRNA-1:cds;Parent=Msa0868730-mRNA-1

Gene Sequence

>Msa0868730

ATGGCCTCAAGCTACTCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAACCAAGATTGCATTTTTGCACCTTATTTCCCACCAGAAGAGCCTCATAAGTTTGCAAATGTTCACAAAATATTTGGTGCAAGCAATGTTAGCAAAATTCTTAATGAAGTTTTACCTCATCAAAGAGAAGATACAGTGAATTCTCTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTGTATGGTTGTGTTGGAGCTATTTCAGTGCTTCAAAGACAACTCATTAAGCTTCAAAAGGAACTTGATGCTACAAATGCCGATTTGATTCGCTTAAATCATCAAGGTTCTTCTTCTCTTGGTCTTGGACATGTTCATTCTGATGGTTTTTTTAATTGTCCATCTAATTTGAGCAATGATTCTTGTGGGGATTCCTACAACAAAGGTGATATATAA

Protein sequence

>Msa0868730

MASSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQLIKLQKELDATNADLIRLNHQGSSSLGLGHVHSDGFFNCPSNLSNDSCGDSYNKGDI*