Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870580 | KEH24935.1 | 74.447 | 407 | 66 | 4 | 14 | 397 | 27 | 418 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870580 | sp|Q9LFQ3|SNL2_ARATH | 45.190 | 447 | 156 | 9 | 19 | 393 | 47 | 476 | 1.04e-99 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870580 | A0A072UGN0 | 74.447 | 407 | 66 | 4 | 14 | 397 | 27 | 418 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0870580 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870580 | MtrunA17_Chr6g0452021 | 74.447 | 407 | 66 | 4 | 14 | 397 | 33 | 424 | 0.0 | 589 |
| Msa0870580 | MtrunA17_Chr6g0452001 | 57.205 | 458 | 92 | 10 | 14 | 393 | 53 | 484 | 7.69e-150 | 460 |
| Msa0870580 | MtrunA17_Chr8g0364231 | 35.354 | 495 | 185 | 13 | 7 | 391 | 31 | 500 | 2.25e-64 | 224 |
| Msa0870580 | MtrunA17_Chr5g0415031 | 34.025 | 482 | 190 | 13 | 19 | 393 | 38 | 498 | 3.63e-54 | 195 |
| Msa0870580 | MtrunA17_Chr8g0362641 | 33.784 | 148 | 97 | 1 | 177 | 324 | 43 | 189 | 1.12e-16 | 80.1 |
| Msa0870580 | MtrunA17_Chr8g0362641 | 40.426 | 94 | 56 | 0 | 246 | 339 | 192 | 285 | 8.44e-15 | 74.7 |
| Msa0870580 | MtrunA17_Chr7g0218901 | 43.636 | 55 | 31 | 0 | 109 | 163 | 1 | 55 | 2.22e-12 | 61.6 |
| Msa0870580 | MtrunA17_Chr5g0415081 | 42.667 | 75 | 30 | 1 | 89 | 163 | 23 | 84 | 1.06e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870580 | AT5G15020.1 | 45.190 | 447 | 156 | 9 | 19 | 393 | 47 | 476 | 1.06e-100 | 328 |
| Msa0870580 | AT5G15020.2 | 45.190 | 447 | 156 | 9 | 19 | 393 | 47 | 476 | 1.20e-100 | 327 |
| Msa0870580 | AT3G01320.1 | 46.189 | 433 | 172 | 13 | 19 | 393 | 52 | 481 | 2.26e-95 | 313 |
| Msa0870580 | AT3G01320.2 | 44.573 | 433 | 167 | 14 | 19 | 393 | 52 | 469 | 4.88e-89 | 295 |
| Msa0870580 | AT1G24190.2 | 33.865 | 502 | 219 | 17 | 10 | 439 | 3 | 463 | 1.33e-68 | 237 |
| Msa0870580 | AT1G24190.3 | 36.123 | 454 | 196 | 15 | 10 | 391 | 3 | 434 | 1.77e-68 | 237 |
| Msa0870580 | AT1G24190.1 | 33.399 | 506 | 220 | 18 | 10 | 439 | 3 | 467 | 9.19e-66 | 229 |
| Msa0870580 | AT1G70060.2 | 33.833 | 467 | 204 | 13 | 13 | 391 | 3 | 452 | 6.36e-59 | 209 |
| Msa0870580 | AT1G70060.1 | 33.833 | 467 | 204 | 13 | 13 | 391 | 3 | 452 | 6.36e-59 | 209 |
| Msa0870580 | AT1G10450.2 | 42.222 | 180 | 66 | 6 | 22 | 178 | 31 | 195 | 5.40e-27 | 115 |
| Msa0870580 | AT1G10450.1 | 42.222 | 180 | 66 | 6 | 22 | 178 | 31 | 195 | 5.40e-27 | 115 |
| Msa0870580 | AT1G10450.3 | 42.222 | 180 | 66 | 6 | 22 | 178 | 82 | 246 | 7.11e-27 | 114 |
| Msa0870580 | AT1G24200.1 | 39.429 | 175 | 67 | 4 | 10 | 163 | 3 | 159 | 1.69e-26 | 106 |
| Msa0870580 | AT1G59890.1 | 42.675 | 157 | 67 | 5 | 23 | 164 | 44 | 192 | 1.76e-23 | 104 |
| Msa0870580 | AT1G59890.3 | 42.675 | 157 | 67 | 5 | 23 | 164 | 44 | 192 | 1.79e-23 | 104 |
| Msa0870580 | AT1G59890.2 | 42.675 | 157 | 67 | 5 | 23 | 164 | 44 | 192 | 1.93e-23 | 104 |
| Msa0870580 | AT1G59890.4 | 42.675 | 157 | 67 | 5 | 23 | 164 | 44 | 192 | 2.01e-23 | 103 |
| Msa0870580 | AT1G70030.1 | 38.562 | 153 | 85 | 4 | 19 | 163 | 6 | 157 | 1.59e-19 | 85.9 |
| Msa0870580 | AT1G70030.2 | 32.886 | 149 | 67 | 4 | 19 | 163 | 17 | 136 | 4.50e-11 | 60.8 |
Find 93 sgRNAs with CRISPR-Local
Find 507 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCGAATTCAATGATTATT+TGG | 0.184994 | 6_1:-5100354 | Msa0870580:CDS |
| TGTAAACATGCTCGTCATTT+TGG | 0.199549 | 6_1:+5102329 | None:intergenic |
| AATCACTGTGGTCCTTAAAA+AGG | 0.219429 | 6_1:+5102104 | None:intergenic |
| ATCAATGGTTGTCAGCTTAC+TGG | 0.284357 | 6_1:+5108493 | None:intergenic |
| GCATGTTTACAAATCATTCT+TGG | 0.291056 | 6_1:-5102317 | Msa0870580:CDS |
| ATGGCAGGTGGAGTTGTTAA+TGG | 0.311196 | 6_1:-5108536 | Msa0870580:CDS |
| ATCAATGGTTGTCAGCTTCC+TGG | 0.311201 | 6_1:+5102825 | None:intergenic |
| TGTCTATGAAGCTGTGAAAA+TGG | 0.343600 | 6_1:-5102901 | Msa0870580:intron |
| GGTGAAGGTGGAGTTGTTAA+TGG | 0.358574 | 6_1:-5102868 | Msa0870580:CDS |
| AAAATATGACGTGTTCCTTC+AGG | 0.366992 | 6_1:-5102752 | Msa0870580:intron |
| AATATATGACATGTTCCTTC+AGG | 0.380063 | 6_1:-5108420 | Msa0870580:CDS |
| TTTGCAGACGGGTTCCTTGC+TGG | 0.381199 | 6_1:-5100237 | Msa0870580:intron |
| TTGGAGCGTTGTGAAAATAC+TGG | 0.388042 | 6_1:-5100335 | Msa0870580:intron |
| GAGCGTCGAACATCCTGATT+TGG | 0.390872 | 6_1:-5101999 | Msa0870580:CDS |
| GAAGGCACTTCAAGAATGTT+TGG | 0.393801 | 6_1:+5100887 | None:intergenic |
| ACTGCCTCCACAGTGATTGC+TGG | 0.397139 | 6_1:+5099648 | None:intergenic |
| CGTCGGCAAACGTTGTTCTC+CGG | 0.401341 | 6_1:-5099903 | Msa0870580:CDS |
| CGATACTGATGGTCATTTAT+CGG | 0.403719 | 6_1:-5100047 | Msa0870580:CDS |
| GTTTCGTCGTCATCCAAATC+AGG | 0.409217 | 6_1:+5101986 | None:intergenic |
| GGTGGAGTTGTTAATGGTGG+TGG | 0.409649 | 6_1:-5108530 | Msa0870580:CDS |
| AAGTTTATGTGAGAAAGTTA+AGG | 0.409971 | 6_1:-5100935 | Msa0870580:CDS |
| TCCACAGAACATGCTCCATT+TGG | 0.423957 | 6_1:-5102034 | Msa0870580:CDS |
| TTCCATTGCTAAAATTATGA+AGG | 0.428276 | 6_1:+5100869 | None:intergenic |
| GTTAAGAAGGCTGAAGCTAA+TGG | 0.430068 | 6_1:-5101872 | Msa0870580:CDS |
| AAAGAATGATTTACAAAATA+CGG | 0.435953 | 6_1:-5100839 | Msa0870580:intron |
| AACGTGAGATAAGGGATATA+AGG | 0.443893 | 6_1:-5101937 | Msa0870580:CDS |
| TGATGCTTTATCTTATTTGA+AGG | 0.444496 | 6_1:-5102806 | Msa0870580:CDS |
| TGATGCTTTATCTTATTTGA+AGG | 0.444496 | 6_1:-5108474 | Msa0870580:CDS |
| GAAGGTGCTAGCGAATTATC+TGG | 0.445143 | 6_1:+5102055 | None:intergenic |
| TCAGGTCATGAAAGATTTCA+AGG | 0.452200 | 6_1:-5108402 | Msa0870580:CDS |
| TTTCAGGTGACTGATTTACT+TGG | 0.452643 | 6_1:-5100395 | Msa0870580:intron |
| GCAAAGGAAACGTGAGATAA+GGG | 0.456041 | 6_1:-5101945 | Msa0870580:CDS |
| CAAATAAGATAAAGCATCAA+TGG | 0.460162 | 6_1:+5102810 | None:intergenic |
| CAAATAAGATAAAGCATCAA+TGG | 0.460162 | 6_1:+5108478 | None:intergenic |
| TTTCTGATGTAGGCCTAAGC+TGG | 0.463724 | 6_1:-5099732 | Msa0870580:CDS |
| GCTAAGGTCAAGTTCTTGAA+TGG | 0.463830 | 6_1:+5099925 | None:intergenic |
| GTCTTCGTCGTCCTCCAACT+TGG | 0.464127 | 6_1:+5100018 | None:intergenic |
| GGTGGAGTTGTTAATGGCGG+TGG | 0.467292 | 6_1:-5102862 | Msa0870580:CDS |
| TCAATGGTTGTCAGCTTCCT+GGG | 0.471642 | 6_1:+5102826 | None:intergenic |
| GGAGTTGTTAATGGTGGTGG+AGG | 0.477497 | 6_1:-5108527 | Msa0870580:CDS |
| TCAATGGTTGTCAGCTTACT+GGG | 0.478729 | 6_1:+5108494 | None:intergenic |
| GTCGGCAAACGTTGTTCTCC+GGG | 0.484649 | 6_1:-5099902 | Msa0870580:CDS |
| AGCAAAGGAAACGTGAGATA+AGG | 0.490597 | 6_1:-5101946 | Msa0870580:CDS |
| AATGGAGGTGGCAGTGGTGA+AGG | 0.491542 | 6_1:-5102883 | Msa0870580:CDS |
| CACTGTGGAGGCAGTGCGCA+TGG | 0.497019 | 6_1:-5099640 | Msa0870580:CDS |
| GACATTGTTATTTCTGATGT+AGG | 0.507789 | 6_1:-5099742 | Msa0870580:CDS |
| CTCAGATCATGATGACCAAA+TGG | 0.509144 | 6_1:+5102019 | None:intergenic |
| CAAAGAACACAAGCGTAAGA+TGG | 0.518039 | 6_1:-5099996 | Msa0870580:CDS |
| GGAGGTGGCAGTGGTGAAGG+TGG | 0.519872 | 6_1:-5102880 | Msa0870580:CDS |
| GCAGGTGGAGTTGTTAATGG+TGG | 0.520522 | 6_1:-5108533 | Msa0870580:CDS |
| GGTGACAAGTCAGCCGTCGC+AGG | 0.523912 | 6_1:-5099686 | Msa0870580:CDS |
| GGAGTTGTTAATGGCGGTGG+AGG | 0.530443 | 6_1:-5102859 | Msa0870580:CDS |
| ATCGGAATCATCCAAGTTGG+AGG | 0.535397 | 6_1:-5100029 | Msa0870580:CDS |
| TTTATCGGAATCATCCAAGT+TGG | 0.538734 | 6_1:-5100032 | Msa0870580:CDS |
| TGGAGGCAGTGCGCATGGAT+TGG | 0.542075 | 6_1:-5099635 | Msa0870580:CDS |
| TGAAATCTTTCATGACCTGA+AGG | 0.542141 | 6_1:+5108405 | None:intergenic |
| TGTCATCAGTAGGTATAAGC+TGG | 0.554103 | 6_1:+5099876 | None:intergenic |
| GAACACAAGCGTAAGATGGA+TGG | 0.555437 | 6_1:-5099992 | Msa0870580:CDS |
| TGTGAAAATGGAGGTGGCAG+TGG | 0.561986 | 6_1:-5102889 | Msa0870580:CDS |
| CTGAAAATGGAGATGGCAGG+TGG | 0.566975 | 6_1:-5108548 | None:intergenic |
| AACAACGTTTGCCGACGCTA+AGG | 0.568227 | 6_1:+5099909 | None:intergenic |
| TGAACATGCGCAAGGAGCAA+AGG | 0.568728 | 6_1:-5101961 | Msa0870580:CDS |
| TCAGCCGTCGCAGGTTGCAG+CGG | 0.572026 | 6_1:-5099677 | Msa0870580:CDS |
| GTAGGTATAAGCTGGTAGCC+CGG | 0.576730 | 6_1:+5099884 | None:intergenic |
| AACATACAAGGAGAAATACA+TGG | 0.576965 | 6_1:-5099954 | Msa0870580:CDS |
| GTGGAGGTGCAAGTACTCCC+AGG | 0.577879 | 6_1:-5102843 | Msa0870580:CDS |
| AGCTTATACCTACTGATGAC+AGG | 0.579709 | 6_1:-5099874 | Msa0870580:intron |
| TGAATCTCTGAAAATGGAGA+TGG | 0.589710 | 6_1:-5108555 | None:intergenic |
| CTCACTGTAAACCTCAGTAA+TGG | 0.592350 | 6_1:+5102261 | None:intergenic |
| TGTATAACAATGTCCAGCTT+AGG | 0.593330 | 6_1:+5099719 | None:intergenic |
| CAAGAACTTGACCTTAGCGT+CGG | 0.605982 | 6_1:-5099920 | Msa0870580:CDS |
| ACGACCGCTGCAACCTGCGA+CGG | 0.621416 | 6_1:+5099673 | None:intergenic |
| CGAAACAATGAACATGCGCA+AGG | 0.628108 | 6_1:-5101969 | Msa0870580:CDS |
| TGAAGAGAAAGAAACATACA+AGG | 0.631772 | 6_1:-5099966 | Msa0870580:CDS |
| ACCAAATGGAGCATGTTCTG+TGG | 0.633252 | 6_1:+5102033 | None:intergenic |
| AAGGTTTACCTGTCATCAGT+AGG | 0.633429 | 6_1:+5099866 | None:intergenic |
| TCAGAGCCACTCGATACTGA+TGG | 0.635391 | 6_1:-5100058 | Msa0870580:intron |
| GAAGGTGGAGTTGTTAATGG+CGG | 0.639574 | 6_1:-5102865 | Msa0870580:CDS |
| TGAAGCTGTGAAAATGGAGG+TGG | 0.646563 | 6_1:-5102895 | Msa0870580:intron |
| GGACCACAGTGATTTGCTCG+AGG | 0.660600 | 6_1:-5102095 | Msa0870580:CDS |
| AATGGAGCATGTTCTGTGGA+AGG | 0.664220 | 6_1:+5102037 | None:intergenic |
| GTAGCCAGCAATCACTGTGG+AGG | 0.664908 | 6_1:-5099652 | Msa0870580:CDS |
| ACATACAAGGAGAAATACAT+GGG | 0.670004 | 6_1:-5099953 | Msa0870580:CDS |
| TTTCACTTGCGACACCAGCA+AGG | 0.674433 | 6_1:+5100223 | None:intergenic |
| GGAGAAGTTGAGCTGCGCTG+AGG | 0.679087 | 6_1:-5100914 | Msa0870580:CDS |
| TCTCTGAAAATGGAGATGGC+AGG | 0.679991 | 6_1:-5108551 | None:intergenic |
| AAATGACCATCAGTATCGAG+TGG | 0.681326 | 6_1:+5100052 | None:intergenic |
| CATTACTGAGGTTTACAGTG+AGG | 0.688498 | 6_1:-5102260 | Msa0870580:intron |
| AGAACACAAGACCATTACTG+AGG | 0.690770 | 6_1:-5102272 | Msa0870580:CDS |
| CTATGAAGCTGTGAAAATGG+AGG | 0.724083 | 6_1:-5102898 | Msa0870580:intron |
| ATTGTTATACACATTGCGCG+CGG | 0.726992 | 6_1:-5099707 | Msa0870580:CDS |
| GTCGTAGCCAGCAATCACTG+TGG | 0.732284 | 6_1:-5099655 | Msa0870580:CDS |
| ACTCCTCGAGCAAATCACTG+TGG | 0.776020 | 6_1:+5102092 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAATAAATTA+GGG | + | chr6_1:5100446-5100465 | None:intergenic | 0.0% |
| !! | AAATAAATAAATAATAAATT+AGG | + | chr6_1:5100447-5100466 | None:intergenic | 0.0% |
| !!! | TTTTTATATATTTTAATTTA+AGG | + | chr6_1:5104267-5104286 | None:intergenic | 0.0% |
| !! | AAAAAAATAAAAAAATAAAA+AGG | - | chr6_1:5104289-5104308 | Msa0870580:intron | 0.0% |
| !! | TTAATTAAAATAGAATATAG+AGG | - | chr6_1:5100573-5100592 | Msa0870580:intron | 10.0% |
| !!! | TAAATAACAAAATTTAGAAT+AGG | + | chr6_1:5107172-5107191 | None:intergenic | 10.0% |
| !! | TAATTAATTCCATCTAAAAA+TGG | + | chr6_1:5102234-5102253 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTTAAAAGAGAT+AGG | - | chr6_1:5102565-5102584 | Msa0870580:intron | 15.0% |
| !!! | ATGGTAGTAAATTTTATTTT+TGG | - | chr6_1:5102592-5102611 | Msa0870580:intron | 15.0% |
| !!! | AATTAATTTTCGTTTCAATT+TGG | + | chr6_1:5103720-5103739 | None:intergenic | 15.0% |
| !! | ATTGAAACGAAAATTAATTA+TGG | - | chr6_1:5103721-5103740 | Msa0870580:intron | 15.0% |
| !! | ATGAAACTTATAATTAGTTA+AGG | - | chr6_1:5103752-5103771 | Msa0870580:intron | 15.0% |
| !! | TGAAACTTATAATTAGTTAA+GGG | - | chr6_1:5103753-5103772 | Msa0870580:intron | 15.0% |
| !! | AAAATAAAAAGGATTTGAAT+TGG | - | chr6_1:5104300-5104319 | Msa0870580:intron | 15.0% |
| !! | GAAAAAAATAAATAAAACCT+AGG | + | chr6_1:5104862-5104881 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTATTTGAAAACT+CGG | - | chr6_1:5104874-5104893 | Msa0870580:intron | 15.0% |
| !!! | ATGAATTTTGATTTTGATAT+TGG | - | chr6_1:5105186-5105205 | Msa0870580:intron | 15.0% |
| !!! | TTCTTAAAAAAAAAACGTTT+TGG | - | chr6_1:5105984-5106003 | Msa0870580:intron | 15.0% |
| !!! | TTTTTTACATAAAAATCTCT+AGG | - | chr6_1:5106035-5106054 | Msa0870580:intron | 15.0% |
| !! | ATCTATATTTATTACATTTC+AGG | - | chr6_1:5106415-5106434 | Msa0870580:intron | 15.0% |
| !! | TGTATTTATAGTGAATATAT+TGG | + | chr6_1:5106757-5106776 | None:intergenic | 15.0% |
| !! | ATAAAGGAAAAATGATATAA+TGG | + | chr6_1:5106959-5106978 | None:intergenic | 15.0% |
| !! | AAAGAATGATTTACAAAATA+CGG | - | chr6_1:5107330-5107349 | Msa0870580:intron | 15.0% |
| !!! | CAAATGTTATTTTTTTATCA+AGG | - | chr6_1:5107650-5107669 | Msa0870580:intron | 15.0% |
| !! | TATTTCAATGAATTACTAAA+CGG | + | chr6_1:5107677-5107696 | None:intergenic | 15.0% |
| !!! | TCATATATTTCTTTTTGATC+CGG | + | chr6_1:5099738-5099757 | None:intergenic | 20.0% |
| !!! | TTTGTAATGATTTTGAAATG+CGG | - | chr6_1:5099823-5099842 | Msa0870580:intron | 20.0% |
| !! | ATTTGTGATATGTTATATGT+TGG | - | chr6_1:5100506-5100525 | Msa0870580:intron | 20.0% |
| !!! | TTTTGATGATTAGAGAAATT+AGG | - | chr6_1:5100841-5100860 | Msa0870580:CDS | 20.0% |
| !!! | TTTTAGATTTTGAGTTATGA+TGG | - | chr6_1:5101276-5101295 | Msa0870580:intron | 20.0% |
| !!! | GTTTTGTTTTGAAAGTAAAT+TGG | - | chr6_1:5101466-5101485 | Msa0870580:intron | 20.0% |
| !! | ATATAAAGAATACGTAACAA+TGG | + | chr6_1:5102196-5102215 | None:intergenic | 20.0% |
| !! | TTAAATGTCTAAACAATACT+TGG | + | chr6_1:5102283-5102302 | None:intergenic | 20.0% |
| !! | ATATTTATATGTTGGGAAAA+CGG | - | chr6_1:5102447-5102466 | Msa0870580:intron | 20.0% |
| !!! | TATGTTTTGTTGATTTTAAG+AGG | - | chr6_1:5102521-5102540 | Msa0870580:intron | 20.0% |
| !! | TTTAAAAGAGATAGGAAAAA+TGG | - | chr6_1:5102573-5102592 | Msa0870580:intron | 20.0% |
| !! | CCATTTGTTTAATTCAAAAA+AGG | + | chr6_1:5103663-5103682 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGAATTAAACAAA+TGG | - | chr6_1:5103660-5103679 | Msa0870580:intron | 20.0% |
| !! | ACAAATGGAATGAATTTATT+TGG | - | chr6_1:5103675-5103694 | Msa0870580:intron | 20.0% |
| !! | ACTAATTATAAGTTTCATGT+TGG | + | chr6_1:5103750-5103769 | None:intergenic | 20.0% |
| !!! | TTATACTTTATGATTTTCAC+AGG | + | chr6_1:5104399-5104418 | None:intergenic | 20.0% |
| !!! | ATTTGAGTTTAAATTGATTG+TGG | - | chr6_1:5104776-5104795 | Msa0870580:intron | 20.0% |
| !!! | TTGTTAGTTTGTTGATATTT+TGG | - | chr6_1:5105081-5105100 | Msa0870580:intron | 20.0% |
| !! | TCAAAATTCATAATATTCCA+GGG | + | chr6_1:5105177-5105196 | None:intergenic | 20.0% |
| !! | ATCAAAATTCATAATATTCC+AGG | + | chr6_1:5105178-5105197 | None:intergenic | 20.0% |
| !!! | TCATATTTTTCTTTTTGATC+CGG | + | chr6_1:5105406-5105425 | None:intergenic | 20.0% |
| !! | CATTACAAAACGTAAAAATA+AGG | + | chr6_1:5105480-5105499 | None:intergenic | 20.0% |
| !! | TATAGTGAATATATTGGATT+CGG | + | chr6_1:5106751-5106770 | None:intergenic | 20.0% |
| !!! | TTTTAATCTAAAGTTTCACT+TGG | + | chr6_1:5107565-5107584 | None:intergenic | 20.0% |
| !! | GTTTAGTAATTCATTGAAAT+AGG | - | chr6_1:5107676-5107695 | Msa0870580:intron | 20.0% |
| !! | AAACATTAAAATCAACCAAA+TGG | + | chr6_1:5108077-5108096 | None:intergenic | 20.0% |
| !!! | TTCATTTTAAGACAAAACAA+TGG | + | chr6_1:5108380-5108399 | None:intergenic | 20.0% |
| !! | CAAATAAGATAAAGCATCAA+TGG | + | chr6_1:5099694-5099713 | None:intergenic | 25.0% |
| !! | TGATGCTTTATCTTATTTGA+AGG | - | chr6_1:5099695-5099714 | Msa0870580:CDS | 25.0% |
| ! | CATTACAAAACGTAAAAACA+AGG | + | chr6_1:5099812-5099831 | None:intergenic | 25.0% |
| !! | AATTCAACCTTTTTCTTTTG+AGG | + | chr6_1:5100028-5100047 | None:intergenic | 25.0% |
| ! | GAAGAAAATATTCTAAGTGA+GGG | - | chr6_1:5100408-5100427 | Msa0870580:intron | 25.0% |
| !!! | CTATTATGAGCTTTATTTAG+TGG | - | chr6_1:5100542-5100561 | Msa0870580:intron | 25.0% |
| !!! | TGGGTTTATAATTCTGAAAT+AGG | - | chr6_1:5100793-5100812 | Msa0870580:intron | 25.0% |
| !!! | GGGTTTATAATTCTGAAATA+GGG | - | chr6_1:5100794-5100813 | Msa0870580:intron | 25.0% |
| !!! | AGAGAAATTAGGTTTTGATT+TGG | - | chr6_1:5100852-5100871 | Msa0870580:CDS | 25.0% |
| ! | TCTATGATTATGATTACCTA+TGG | + | chr6_1:5100967-5100986 | None:intergenic | 25.0% |
| !! | TTGAAGGTTTTCATGAAAAA+TGG | - | chr6_1:5101011-5101030 | Msa0870580:intron | 25.0% |
| !! | TGAAGGTTTTCATGAAAAAT+GGG | - | chr6_1:5101012-5101031 | Msa0870580:intron | 25.0% |
| ! | AGAAACGTTTAAACAAACTT+TGG | - | chr6_1:5101078-5101097 | Msa0870580:intron | 25.0% |
| ! | GAAACGTTTAAACAAACTTT+GGG | - | chr6_1:5101079-5101098 | Msa0870580:intron | 25.0% |
| !! | GAATTCAAAATTGGGATTTT+GGG | - | chr6_1:5101120-5101139 | Msa0870580:intron | 25.0% |
| !! | AATTCAAAATTGGGATTTTG+GGG | - | chr6_1:5101121-5101140 | Msa0870580:intron | 25.0% |
| !! | TAATTTTGTTAGATTTCCAG+TGG | - | chr6_1:5101230-5101249 | Msa0870580:intron | 25.0% |
| !!! | GATCTTTAAAACCAAATACT+TGG | - | chr6_1:5101529-5101548 | Msa0870580:intron | 25.0% |
| ! | AAGATATGTGAATGATTGTT+AGG | - | chr6_1:5101586-5101605 | Msa0870580:intron | 25.0% |
| !! | TACATAATCATTTTAAGCGA+AGG | - | chr6_1:5101711-5101730 | Msa0870580:intron | 25.0% |
| !! | ACATAATCATTTTAAGCGAA+GGG | - | chr6_1:5101712-5101731 | Msa0870580:intron | 25.0% |
| !!! | ATTATTGGACCATTTTTAGA+TGG | - | chr6_1:5102222-5102241 | Msa0870580:intron | 25.0% |
| !!! | CAGTTGTTTTAAATAAAGAG+TGG | - | chr6_1:5102341-5102360 | Msa0870580:intron | 25.0% |
| ! | TATTTATATGTTGGGAAAAC+GGG | - | chr6_1:5102448-5102467 | Msa0870580:intron | 25.0% |
| !!! | TTTTGTTGATTTTAAGAGGT+GGG | - | chr6_1:5102525-5102544 | Msa0870580:intron | 25.0% |
| ! | TGATTGATGAAGAAATTGAA+GGG | - | chr6_1:5102705-5102724 | Msa0870580:intron | 25.0% |
| ! | TCTAGATCTAACAAAAATGA+AGG | - | chr6_1:5103181-5103200 | Msa0870580:intron | 25.0% |
| !! | TCTAACAAAAATGAAGGTTT+TGG | - | chr6_1:5103187-5103206 | Msa0870580:intron | 25.0% |
| ! | TAATTCAAAAAAGGTTACCT+TGG | + | chr6_1:5103654-5103673 | None:intergenic | 25.0% |
| ! | GAATGAATTTATTTGGTAGA+CGG | - | chr6_1:5103682-5103701 | Msa0870580:intron | 25.0% |
| ! | TTGTTTGTCTTGCTAAAAAT+TGG | - | chr6_1:5104028-5104047 | Msa0870580:intron | 25.0% |
| ! | TATTGCTATGTTATATGGAT+CGG | + | chr6_1:5104340-5104359 | None:intergenic | 25.0% |
| !!! | ATTTGTGATTTTGATTATGC+AGG | - | chr6_1:5104523-5104542 | Msa0870580:intron | 25.0% |
| !!! | TTTGTGATTTTGATTATGCA+GGG | - | chr6_1:5104524-5104543 | Msa0870580:intron | 25.0% |
| ! | AAATTAGGACAAATCCAAAA+AGG | + | chr6_1:5104670-5104689 | None:intergenic | 25.0% |
| ! | AAATAAATAAAACCTAGGTC+TGG | + | chr6_1:5104857-5104876 | None:intergenic | 25.0% |
| !! | CAAATAAGATAAAGCATCAA+TGG | + | chr6_1:5099694-5099713 | None:intergenic | 25.0% |
| !! | TGATGCTTTATCTTATTTGA+AGG | - | chr6_1:5099695-5099714 | Msa0870580:CDS | 25.0% |
| !! | GTTTTGTAATGAGTTTGAAA+CGG | - | chr6_1:5105489-5105508 | Msa0870580:intron | 25.0% |
| !!! | TTTTGTAATGAGTTTGAAAC+GGG | - | chr6_1:5105490-5105509 | Msa0870580:intron | 25.0% |
| ! | AACATTGTACTTACAATCAA+GGG | - | chr6_1:5105514-5105533 | Msa0870580:intron | 25.0% |
| !! | AATTCAACCTTTTTCTTTTG+AGG | + | chr6_1:5100028-5100047 | None:intergenic | 25.0% |
| ! | AGATCCTAACAAAAAGAAAT+CGG | - | chr6_1:5106275-5106294 | Msa0870580:intron | 25.0% |
| !!! | TTAACCGATTTCTTTTTGTT+AGG | + | chr6_1:5106282-5106301 | None:intergenic | 25.0% |
| ! | TCATAAAGTAGCATGATTAT+CGG | - | chr6_1:5106512-5106531 | Msa0870580:intron | 25.0% |
| !!! | TTCTTAATTTTTTTACGTGC+TGG | + | chr6_1:5106546-5106565 | None:intergenic | 25.0% |
| ! | CACGTAAAAAAATTAAGAAG+AGG | - | chr6_1:5106547-5106566 | Msa0870580:intron | 25.0% |
| ! | TGAATGTATCTTAACTGATT+TGG | - | chr6_1:5106698-5106717 | Msa0870580:intron | 25.0% |
| ! | TGCATCTAACAACTTAATAA+AGG | + | chr6_1:5106975-5106994 | None:intergenic | 25.0% |
| ! | GATGCATAAAACTTACTATT+AGG | - | chr6_1:5106989-5107008 | Msa0870580:intron | 25.0% |
| ! | ATGAAATTAACATTCAACAG+TGG | + | chr6_1:5107016-5107035 | None:intergenic | 25.0% |
| ! | AAGTTTATGTGAGAAAGTTA+AGG | - | chr6_1:5107234-5107253 | Msa0870580:intron | 25.0% |
| ! | TTCCATTGCTAAAATTATGA+AGG | + | chr6_1:5107303-5107322 | None:intergenic | 25.0% |
| ! | AATTAAAATCTGCAACACTT+TGG | + | chr6_1:5107424-5107443 | None:intergenic | 25.0% |
| !! | ATTTCATGTAGTTTTCATTC+TGG | - | chr6_1:5107496-5107515 | Msa0870580:intron | 25.0% |
| ! | ACGTTCGAAATATATATTTC+AGG | - | chr6_1:5107758-5107777 | Msa0870580:intron | 25.0% |
| !!! | CATTTTCTTTTTCATCCATT+TGG | - | chr6_1:5108059-5108078 | Msa0870580:intron | 25.0% |
| AATATATGACATGTTCCTTC+AGG | - | chr6_1:5099749-5099768 | Msa0870580:CDS | 30.0% | |
| AACATTGTGCTTACAATCAA+GGG | - | chr6_1:5099846-5099865 | Msa0870580:intron | 30.0% | |
| !!! | AGGGATCTCAATATTTTTTG+TGG | - | chr6_1:5099865-5099884 | Msa0870580:intron | 30.0% |
| ! | GGTCACAACAATTTGATTTA+TGG | - | chr6_1:5099947-5099966 | Msa0870580:CDS | 30.0% |
| TATCCAGAGTTATTTGAATG+AGG | - | chr6_1:5100373-5100392 | Msa0870580:CDS | 30.0% | |
| GGAAGAAAATATTCTAAGTG+AGG | - | chr6_1:5100407-5100426 | Msa0870580:intron | 30.0% | |
| AAAATAGAATATAGAGGCTG+AGG | - | chr6_1:5100579-5100598 | Msa0870580:intron | 30.0% | |
| AAATAGAATATAGAGGCTGA+GGG | - | chr6_1:5100580-5100599 | Msa0870580:intron | 30.0% | |
| !! | AATACGTAGAAACTGCTTTT+GGG | - | chr6_1:5100666-5100685 | Msa0870580:intron | 30.0% |
| ! | TACCTTAGATTGGTTGAATT+CGG | + | chr6_1:5100748-5100767 | None:intergenic | 30.0% |
| ! | AATTCAACCAATCTAAGGTA+AGG | - | chr6_1:5100748-5100767 | Msa0870580:intron | 30.0% |
| ! | ATTCAACCAATCTAAGGTAA+GGG | - | chr6_1:5100749-5100768 | Msa0870580:intron | 30.0% |
| !! | TTCTGAAATAGGGTTTAACA+TGG | - | chr6_1:5100804-5100823 | Msa0870580:intron | 30.0% |
| ! | TGAATTTGTGTTGTTCTTGA+AGG | - | chr6_1:5100995-5101014 | Msa0870580:intron | 30.0% |
| ! | GGAATTCAAAATTGGGATTT+TGG | - | chr6_1:5101119-5101138 | Msa0870580:intron | 30.0% |
| !! | ACAGCATTTCTGTTTTGAAT+TGG | - | chr6_1:5101179-5101198 | Msa0870580:intron | 30.0% |
| !!! | TTCTGTTTTGAATTGGCTTT+TGG | - | chr6_1:5101186-5101205 | Msa0870580:intron | 30.0% |
| ! | TAGGTCTTGGAGAAATTTTA+AGG | - | chr6_1:5101311-5101330 | Msa0870580:intron | 30.0% |
| AGTTAGATTCATCACATCAT+AGG | + | chr6_1:5101444-5101463 | None:intergenic | 30.0% | |
| ATGATGTGATGAATCTAACT+TGG | - | chr6_1:5101444-5101463 | Msa0870580:intron | 30.0% | |
| ACAAAAGTTTGCCAAGTATT+TGG | + | chr6_1:5101543-5101562 | None:intergenic | 30.0% | |
| ! | AAATACTTGGCAAACTTTTG+TGG | - | chr6_1:5101542-5101561 | Msa0870580:intron | 30.0% |
| ! | CATAATCATTTTAAGCGAAG+GGG | - | chr6_1:5101713-5101732 | Msa0870580:intron | 30.0% |
| ! | ATAATCATTTTAAGCGAAGG+GGG | - | chr6_1:5101714-5101733 | Msa0870580:intron | 30.0% |
| TCGAATTATGAAATTAGCGA+AGG | - | chr6_1:5101752-5101771 | Msa0870580:intron | 30.0% | |
| CGAATTATGAAATTAGCGAA+GGG | - | chr6_1:5101753-5101772 | Msa0870580:intron | 30.0% | |
| ! | CTCTGTTAATTTTAAGCGAA+GGG | - | chr6_1:5101784-5101803 | Msa0870580:intron | 30.0% |
| !! | TAATTATGTTGATGACGTTG+AGG | - | chr6_1:5102248-5102267 | Msa0870580:intron | 30.0% |
| TAAACAATACTTGGCACTAA+AGG | + | chr6_1:5102274-5102293 | None:intergenic | 30.0% | |
| TAATTTCAAATATGTCGCAG+CGG | + | chr6_1:5102314-5102333 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTGATTTTAAGAGG+TGG | - | chr6_1:5102524-5102543 | Msa0870580:intron | 30.0% |
| ACAAAAATGAGAAAGAGATG+AGG | - | chr6_1:5102652-5102671 | Msa0870580:intron | 30.0% | |
| GAGATGAGGAAAAAAACATA+AGG | - | chr6_1:5102666-5102685 | Msa0870580:intron | 30.0% | |
| GTGATTGATGAAGAAATTGA+AGG | - | chr6_1:5102704-5102723 | Msa0870580:intron | 30.0% | |
| AGAGAGAGTGAAGAAATATA+AGG | - | chr6_1:5102753-5102772 | Msa0870580:CDS | 30.0% | |
| GAGAGAGTGAAGAAATATAA+GGG | - | chr6_1:5102754-5102773 | Msa0870580:CDS | 30.0% | |
| ! | GATTTTGTGATTGATTACAG+AGG | + | chr6_1:5102859-5102878 | None:intergenic | 30.0% |
| CACAAAATCTGAACATAATC+AGG | - | chr6_1:5102870-5102889 | Msa0870580:CDS | 30.0% | |
| !! | TTTTCAGATTCGGTTACAAA+TGG | + | chr6_1:5103003-5103022 | None:intergenic | 30.0% |
| AAATTTCTCAGCAACTATGA+TGG | + | chr6_1:5103125-5103144 | None:intergenic | 30.0% | |
| !! | AACAAAAATGAAGGTTTTGG+TGG | - | chr6_1:5103190-5103209 | Msa0870580:intron | 30.0% |
| !! | GGTTTTGGTGGAAAAAAAAA+CGG | - | chr6_1:5103202-5103221 | Msa0870580:intron | 30.0% |
| !! | GTTTTGGTGGAAAAAAAAAC+GGG | - | chr6_1:5103203-5103222 | Msa0870580:intron | 30.0% |
| !! | TGTTTTTGTTTCAGAGAGAA+AGG | - | chr6_1:5103512-5103531 | Msa0870580:intron | 30.0% |
| ! | TGAAGAAGAAACTAGTGTTT+TGG | + | chr6_1:5103833-5103852 | None:intergenic | 30.0% |
| !!! | TATCGATGTACTTTTTTGTG+TGG | - | chr6_1:5104106-5104125 | Msa0870580:intron | 30.0% |
| ATTGCTATGTTATATGGATC+GGG | + | chr6_1:5104339-5104358 | None:intergenic | 30.0% | |
| CGTTGAATTGAAAGTGAAAA+GGG | + | chr6_1:5104429-5104448 | None:intergenic | 30.0% | |
| ACGTTGAATTGAAAGTGAAA+AGG | + | chr6_1:5104430-5104449 | None:intergenic | 30.0% | |
| AAAGGAGTGAAACACAAAAT+AGG | + | chr6_1:5104652-5104671 | None:intergenic | 30.0% | |
| ! | TTTTGTGTTTCACTCCTTTT+TGG | - | chr6_1:5104653-5104672 | Msa0870580:intron | 30.0% |
| CAACAGTGAAACACAAAATT+AGG | + | chr6_1:5104685-5104704 | None:intergenic | 30.0% | |
| ATTGAACACTACAAGTGAAA+AGG | + | chr6_1:5104726-5104745 | None:intergenic | 30.0% | |
| TCAACATTACTCGTATTACT+TGG | + | chr6_1:5104978-5104997 | None:intergenic | 30.0% | |
| ACAAGAGTTCATAATATTCC+AGG | + | chr6_1:5105065-5105084 | None:intergenic | 30.0% | |
| ! | TTTGTAATGAGTTTGAAACG+GGG | - | chr6_1:5105491-5105510 | Msa0870580:intron | 30.0% |
| GAACATTGTACTTACAATCA+AGG | - | chr6_1:5105513-5105532 | Msa0870580:intron | 30.0% | |
| ! | GGTCACAACAATTTGATTTA+TGG | - | chr6_1:5099947-5099966 | Msa0870580:CDS | 30.0% |
| CAAATTTACCAATTACAGCT+AGG | + | chr6_1:5105802-5105821 | None:intergenic | 30.0% | |
| GCATGTTTACAAATCATTCT+TGG | - | chr6_1:5105852-5105871 | Msa0870580:intron | 30.0% | |
| CAAAAAGAAATCGGTTAAGA+AGG | - | chr6_1:5106284-5106303 | Msa0870580:intron | 30.0% | |
| ATAACTTGAGTTACAGAATG+TGG | - | chr6_1:5106794-5106813 | Msa0870580:intron | 30.0% | |
| AAGAAACTTCAAGAACACAA+TGG | + | chr6_1:5107076-5107095 | None:intergenic | 30.0% | |
| ACAATCAAGAAAGATGCTAA+CGG | + | chr6_1:5107117-5107136 | None:intergenic | 30.0% | |
| !! | TGCCTTCATAATTTTAGCAA+TGG | - | chr6_1:5107298-5107317 | Msa0870580:intron | 30.0% |
| GATAATGCAGCAAAAAATGA+AGG | + | chr6_1:5107402-5107421 | None:intergenic | 30.0% | |
| TGAAATAGGTTTCACTATCT+CGG | - | chr6_1:5107690-5107709 | Msa0870580:intron | 30.0% | |
| GAGCGAATTCAATGATTATT+TGG | - | chr6_1:5107815-5107834 | Msa0870580:intron | 30.0% | |
| TGAAGAGAAAGAAACATACA+AGG | - | chr6_1:5108203-5108222 | Msa0870580:intron | 30.0% | |
| AACATACAAGGAGAAATACA+TGG | - | chr6_1:5108215-5108234 | Msa0870580:intron | 30.0% | |
| ACATACAAGGAGAAATACAT+GGG | - | chr6_1:5108216-5108235 | Msa0870580:intron | 30.0% | |
| ! | AAATGTGTTGACATGCATTT+AGG | - | chr6_1:5108398-5108417 | Msa0870580:CDS | 30.0% |
| !! | GACATTGTTATTTCTGATGT+AGG | - | chr6_1:5108427-5108446 | Msa0870580:CDS | 30.0% |
| TGAAATCTTTCATGACCTGA+AGG | + | chr6_1:5099767-5099786 | None:intergenic | 35.0% | |
| TCAGGTCATGAAAGATTTCA+AGG | - | chr6_1:5099767-5099786 | Msa0870580:intron | 35.0% | |
| GAACATTGTGCTTACAATCA+AGG | - | chr6_1:5099845-5099864 | Msa0870580:intron | 35.0% | |
| ! | TTTTTGTGGTGATTGTTTGC+AGG | - | chr6_1:5099879-5099898 | Msa0870580:CDS | 35.0% |
| TGAAGCTCCTCAAAAGAAAA+AGG | - | chr6_1:5100018-5100037 | Msa0870580:CDS | 35.0% | |
| ! | TGAAGATGCTATTAGTTTCG+TGG | - | chr6_1:5100048-5100067 | Msa0870580:CDS | 35.0% |
| ! | GAAGATGCTATTAGTTTCGT+GGG | - | chr6_1:5100049-5100068 | Msa0870580:CDS | 35.0% |
| TCATGTAAGTTCGAAAGATG+CGG | + | chr6_1:5100121-5100140 | None:intergenic | 35.0% | |
| TGTTTCATGTGTCACAACTT+CGG | - | chr6_1:5100143-5100162 | Msa0870580:intron | 35.0% | |
| GTACCTCATTCAAATAACTC+TGG | + | chr6_1:5100379-5100398 | None:intergenic | 35.0% | |
| ! | TTGAATGAGGTACATTTTCG+AGG | - | chr6_1:5100386-5100405 | Msa0870580:CDS | 35.0% |
| AATAGAATATAGAGGCTGAG+GGG | - | chr6_1:5100581-5100600 | Msa0870580:intron | 35.0% | |
| ! | GAATACGTAGAAACTGCTTT+TGG | - | chr6_1:5100665-5100684 | Msa0870580:intron | 35.0% |
| !! | AAACTGCTTTTGGGAGAAAA+AGG | - | chr6_1:5100675-5100694 | Msa0870580:intron | 35.0% |
| !! | AACTGCTTTTGGGAGAAAAA+GGG | - | chr6_1:5100676-5100695 | Msa0870580:intron | 35.0% |
| !! | TTGTTGATGATTGATGCCAT+AGG | - | chr6_1:5100948-5100967 | Msa0870580:CDS | 35.0% |
| TTCATGAAAAATGGGTCGAA+TGG | - | chr6_1:5101020-5101039 | Msa0870580:intron | 35.0% | |
| !!! | GAATGGTGATTTTTGGTGAA+AGG | - | chr6_1:5101037-5101056 | Msa0870580:intron | 35.0% |
| !! | ACAAACTTTGGGACCAAATT+TGG | - | chr6_1:5101090-5101109 | Msa0870580:intron | 35.0% |
| !! | CAAACTTTGGGACCAAATTT+GGG | - | chr6_1:5101091-5101110 | Msa0870580:intron | 35.0% |
| GGCTTAGGGAATTCAAAATT+GGG | - | chr6_1:5101112-5101131 | Msa0870580:intron | 35.0% | |
| AAATTTCTCCAAGACCTACT+TGG | + | chr6_1:5101309-5101328 | None:intergenic | 35.0% | |
| GAGTTTGGAAACAAACCATA+GGG | + | chr6_1:5101373-5101392 | None:intergenic | 35.0% | |
| TAATTGAACTCCTAACACAC+AGG | + | chr6_1:5101401-5101420 | None:intergenic | 35.0% | |
| GTGTGTTAGGAGTTCAATTA+AGG | - | chr6_1:5101401-5101420 | Msa0870580:intron | 35.0% | |
| ! | TGTTGTTGTTGTTGTTGCAT+TGG | - | chr6_1:5101679-5101698 | Msa0870580:intron | 35.0% |
| ! | GCTCTGTTAATTTTAAGCGA+AGG | - | chr6_1:5101783-5101802 | Msa0870580:intron | 35.0% |
| TTTGAATGTTGCCTCTATGT+GGG | - | chr6_1:5102063-5102082 | Msa0870580:CDS | 35.0% | |
| AATCAGAGTTCATCACAAAC+AGG | + | chr6_1:5102418-5102437 | None:intergenic | 35.0% | |
| TACAGAAATAAACGCTTTCG+TGG | - | chr6_1:5102474-5102493 | Msa0870580:intron | 35.0% | |
| CATAAGGAAGAGTGAGATAA+AGG | - | chr6_1:5102682-5102701 | Msa0870580:intron | 35.0% | |
| TTGATGAAGAAATTGAAGGG+AGG | - | chr6_1:5102708-5102727 | Msa0870580:intron | 35.0% | |
| AGAGTGAAGAAATATAAGGG+AGG | - | chr6_1:5102757-5102776 | Msa0870580:CDS | 35.0% | |
| GAGTGAAGAAATATAAGGGA+GGG | - | chr6_1:5102758-5102777 | Msa0870580:CDS | 35.0% | |
| TACAGAGGTGATCTTAATCT+TGG | + | chr6_1:5102844-5102863 | None:intergenic | 35.0% | |
| ! | TCTTGCGTGATTTTCAGATT+CGG | + | chr6_1:5103013-5103032 | None:intergenic | 35.0% |
| ATCTGAAAATCACGCAAGAA+AGG | - | chr6_1:5103014-5103033 | Msa0870580:intron | 35.0% | |
| TCTGAAAATCACGCAAGAAA+GGG | - | chr6_1:5103015-5103034 | Msa0870580:intron | 35.0% | |
| TGGAAAAAAAAACGGGAAAC+TGG | - | chr6_1:5103210-5103229 | Msa0870580:intron | 35.0% | |
| CTAGTAAATGACGACGATTA+AGG | + | chr6_1:5103436-5103455 | None:intergenic | 35.0% | |
| !! | CTCTGAAACAAAAACACGAA+TGG | + | chr6_1:5103508-5103527 | None:intergenic | 35.0% |
| TGACATGTCAAGATTAGGTT+GGG | + | chr6_1:5103618-5103637 | None:intergenic | 35.0% | |
| TGAATTTATTTGGTAGACGG+AGG | - | chr6_1:5103685-5103704 | Msa0870580:intron | 35.0% | |
| !!! | AGAAACTAGTGTTTTGGTGA+CGG | + | chr6_1:5103827-5103846 | None:intergenic | 35.0% |
| TTCTTCATCATTCACCAAAG+AGG | - | chr6_1:5103846-5103865 | Msa0870580:intron | 35.0% | |
| TCTTCATCATTCACCAAAGA+GGG | - | chr6_1:5103847-5103866 | Msa0870580:intron | 35.0% | |
| AAAGAGAAAAACGAGCTAGA+GGG | + | chr6_1:5103906-5103925 | None:intergenic | 35.0% | |
| GACAATGCATGATATATGCA+AGG | + | chr6_1:5104154-5104173 | None:intergenic | 35.0% | |
| CATATTGATACAATGTCTCG+TGG | + | chr6_1:5104196-5104215 | None:intergenic | 35.0% | |
| GGGGTTATTGCTATGTTATA+TGG | + | chr6_1:5104345-5104364 | None:intergenic | 35.0% | |
| ATGAAATTCAAACGTCCCAT+AGG | - | chr6_1:5104547-5104566 | Msa0870580:intron | 35.0% | |
| CTATTTGAAAACTCGGTATC+CGG | - | chr6_1:5104881-5104900 | Msa0870580:intron | 35.0% | |
| ! | TCTAGAACCTACTAATCTGA+GGG | - | chr6_1:5104905-5104924 | Msa0870580:intron | 35.0% |
| TCTGCATTTGCATGTATTTG+TGG | - | chr6_1:5105024-5105043 | Msa0870580:intron | 35.0% | |
| !! | TGGACGAATATTTTTGAACC+TGG | - | chr6_1:5105044-5105063 | Msa0870580:intron | 35.0% |
| TGTCTATGAAGCTGTGAAAA+TGG | - | chr6_1:5105268-5105287 | Msa0870580:intron | 35.0% | |
| AAAATATGACGTGTTCCTTC+AGG | - | chr6_1:5105417-5105436 | Msa0870580:intron | 35.0% | |
| TGAAATCTTTCATGACCTGA+AGG | + | chr6_1:5099767-5099786 | None:intergenic | 35.0% | |
| TCAGGTCATGAAAGATTTCA+AGG | - | chr6_1:5099767-5099786 | Msa0870580:intron | 35.0% | |
| ! | TTATCTCATGTCCTTTTGGT+AGG | + | chr6_1:5105653-5105672 | None:intergenic | 35.0% |
| !! | AGTCTTATCTCATGTCCTTT+TGG | + | chr6_1:5105657-5105676 | None:intergenic | 35.0% |
| ACATGAGATAAGACTTGATG+AGG | - | chr6_1:5105662-5105681 | Msa0870580:intron | 35.0% | |
| TGAAGCTCCTCAAAAGAAAA+AGG | - | chr6_1:5100018-5100037 | Msa0870580:CDS | 35.0% | |
| ! | TGAAGATGCTATTAGTTTCG+TGG | - | chr6_1:5100048-5100067 | Msa0870580:CDS | 35.0% |
| ! | GAAGATGCTATTAGTTTCGT+GGG | - | chr6_1:5100049-5100068 | Msa0870580:CDS | 35.0% |
| CAGCTAGGAATTAACGATAT+CGG | + | chr6_1:5105787-5105806 | None:intergenic | 35.0% | |
| CGTTAATTCCTAGCTGTAAT+TGG | - | chr6_1:5105791-5105810 | Msa0870580:intron | 35.0% | |
| ! | TGTAAACATGCTCGTCATTT+TGG | + | chr6_1:5105843-5105862 | None:intergenic | 35.0% |
| AGGTTTACAGTGAGGTAATA+TGG | - | chr6_1:5105917-5105936 | Msa0870580:intron | 35.0% | |
| ATCACTGTGGTCCTTAAAAA+GGG | + | chr6_1:5106067-5106086 | None:intergenic | 35.0% | |
| AATCACTGTGGTCCTTAAAA+AGG | + | chr6_1:5106068-5106087 | None:intergenic | 35.0% | |
| AACGTGAGATAAGGGATATA+AGG | - | chr6_1:5106232-5106251 | Msa0870580:intron | 35.0% | |
| ACAGCATATTGAAAACGTGA+TGG | + | chr6_1:5106471-5106490 | None:intergenic | 35.0% | |
| ACTAATGATCAAAGTCAGCA+AGG | + | chr6_1:5107378-5107397 | None:intergenic | 35.0% | |
| ATACAACTGAAACGCTAAGT+TGG | + | chr6_1:5107623-5107642 | None:intergenic | 35.0% | |
| ! | TTTCAGGTGACTGATTTACT+TGG | - | chr6_1:5107774-5107793 | Msa0870580:intron | 35.0% |
| !!! | TGCCTATTTGTTTTTGCAGA+CGG | - | chr6_1:5107920-5107939 | Msa0870580:intron | 35.0% |
| CGATACTGATGGTCATTTAT+CGG | - | chr6_1:5108122-5108141 | Msa0870580:intron | 35.0% | |
| TTTATCGGAATCATCCAAGT+TGG | - | chr6_1:5108137-5108156 | Msa0870580:intron | 35.0% | |
| TGTATAACAATGTCCAGCTT+AGG | + | chr6_1:5108453-5108472 | None:intergenic | 35.0% | |
| TCAATGGTTGTCAGCTTACT+GGG | + | chr6_1:5099678-5099697 | None:intergenic | 40.0% | |
| ATCAATGGTTGTCAGCTTAC+TGG | + | chr6_1:5099679-5099698 | None:intergenic | 40.0% | |
| GGAAGTGAAAAACACGTTTC+CGG | - | chr6_1:5099716-5099735 | Msa0870580:CDS | 40.0% | |
| GCTGTCAAGGAACTATTCAA+AGG | - | chr6_1:5099926-5099945 | Msa0870580:CDS | 40.0% | |
| ATTCAACGCTTACCTACCAA+AGG | - | chr6_1:5099970-5099989 | Msa0870580:CDS | 40.0% | |
| TTCAACGCTTACCTACCAAA+GGG | - | chr6_1:5099971-5099990 | Msa0870580:CDS | 40.0% | |
| TCATCTCATATCCCTTTGGT+AGG | + | chr6_1:5099985-5100004 | None:intergenic | 40.0% | |
| AGTCTCATCTCATATCCCTT+TGG | + | chr6_1:5099989-5100008 | None:intergenic | 40.0% | |
| ATATGAGATGAGACTTGACG+AGG | - | chr6_1:5099994-5100013 | Msa0870580:CDS | 40.0% | |
| TAGTTTCGTGGGCAAGATAA+AGG | - | chr6_1:5100060-5100079 | Msa0870580:intron | 40.0% | |
| TGGGCAAGATAAAGGTTGTT+GGG | - | chr6_1:5100068-5100087 | Msa0870580:intron | 40.0% | |
| CAAGATAAAGGTTGTTGGGA+CGG | - | chr6_1:5100072-5100091 | Msa0870580:intron | 40.0% | |
| ! | ACAACTTCGGAAGTATGTTG+CGG | - | chr6_1:5100156-5100175 | Msa0870580:intron | 40.0% |
| TACCTCTTGTGAAAGTCGTT+TGG | - | chr6_1:5100293-5100312 | Msa0870580:intron | 40.0% | |
| ACCTCTTGTGAAAGTCGTTT+GGG | - | chr6_1:5100294-5100313 | Msa0870580:intron | 40.0% | |
| GTCCGAATTCAACCAATCTA+AGG | - | chr6_1:5100743-5100762 | Msa0870580:intron | 40.0% | |
| ! | AACCAATCTAAGGTAAGGGT+GGG | - | chr6_1:5100753-5100772 | Msa0870580:intron | 40.0% |
| !! | GGACTAGCTTCTCTAATAGT+GGG | - | chr6_1:5100774-5100793 | Msa0870580:intron | 40.0% |
| ! | ATGGGTCGAATGGTGATTTT+TGG | - | chr6_1:5101030-5101049 | Msa0870580:intron | 40.0% |
| GAATTCCCTAAGCCCAAATT+TGG | + | chr6_1:5101106-5101125 | None:intergenic | 40.0% | |
| GGGCTTAGGGAATTCAAAAT+TGG | - | chr6_1:5101111-5101130 | Msa0870580:intron | 40.0% | |
| !!! | TGGGATTTTGGGGTGAAAAA+TGG | - | chr6_1:5101131-5101150 | Msa0870580:intron | 40.0% |
| TGTTAGATTTCCAGTGGCTT+TGG | - | chr6_1:5101236-5101255 | Msa0870580:intron | 40.0% | |
| ! | ATGATGGAAACACTCCAAGT+AGG | - | chr6_1:5101292-5101311 | Msa0870580:intron | 40.0% |
| GAAACAAACCATAGGGTTTC+GGG | + | chr6_1:5101366-5101385 | None:intergenic | 40.0% | |
| GGAAACAAACCATAGGGTTT+CGG | + | chr6_1:5101367-5101386 | None:intergenic | 40.0% | |
| GGAGTTTGGAAACAAACCAT+AGG | + | chr6_1:5101374-5101393 | None:intergenic | 40.0% | |
| !!! | AACACACAGGTTTTGGAGTT+TGG | + | chr6_1:5101388-5101407 | None:intergenic | 40.0% |
| AACTCCAAAACCTGTGTGTT+AGG | - | chr6_1:5101388-5101407 | Msa0870580:intron | 40.0% | |
| ! | AACTCCTAACACACAGGTTT+TGG | + | chr6_1:5101395-5101414 | None:intergenic | 40.0% |
| GTTGAATTACGACATTAGCG+AGG | - | chr6_1:5101823-5101842 | Msa0870580:intron | 40.0% | |
| CAACAAATGCAGTATGCATG+TGG | + | chr6_1:5101871-5101890 | None:intergenic | 40.0% | |
| AGGCAACATTCAAACAGAAG+GGG | + | chr6_1:5102057-5102076 | None:intergenic | 40.0% | |
| GAGGCAACATTCAAACAGAA+GGG | + | chr6_1:5102058-5102077 | None:intergenic | 40.0% | |
| AGAGGCAACATTCAAACAGA+AGG | + | chr6_1:5102059-5102078 | None:intergenic | 40.0% | |
| GTTTGAATGTTGCCTCTATG+TGG | - | chr6_1:5102062-5102081 | Msa0870580:CDS | 40.0% | |
| TTGATTCCTCTTGTCGTCTT+AGG | - | chr6_1:5102123-5102142 | Msa0870580:intron | 40.0% | |
| AACGCTTTCGTGGAAAAAAG+CGG | - | chr6_1:5102484-5102503 | Msa0870580:intron | 40.0% | |
| AAGAAATTGAAGGGAGGATG+TGG | - | chr6_1:5102714-5102733 | Msa0870580:intron | 40.0% | |
| AGGTTTACAAGTGAAGGAGA+AGG | - | chr6_1:5102788-5102807 | Msa0870580:CDS | 40.0% | |
| AGGAGATGAATCGTTGAAGT+TGG | + | chr6_1:5103475-5103494 | None:intergenic | 40.0% | |
| ! | TGAGGTACACGACTTTAAGA+GGG | + | chr6_1:5103569-5103588 | None:intergenic | 40.0% |
| ! | TTTAAGGTGGCATAATCGTG+AGG | + | chr6_1:5103587-5103606 | None:intergenic | 40.0% |
| !! | TCAAGATTAGGTTGGGGATA+GGG | + | chr6_1:5103611-5103630 | None:intergenic | 40.0% |
| ! | GACATGTCAAGATTAGGTTG+GGG | + | chr6_1:5103617-5103636 | None:intergenic | 40.0% |
| CTGACATGTCAAGATTAGGT+TGG | + | chr6_1:5103619-5103638 | None:intergenic | 40.0% | |
| AAAGGTTACCTTGGCATATG+TGG | + | chr6_1:5103645-5103664 | None:intergenic | 40.0% | |
| AAGAGAAAAACGAGCTAGAG+GGG | + | chr6_1:5103905-5103924 | None:intergenic | 40.0% | |
| GAAAGAGAAAAACGAGCTAG+AGG | + | chr6_1:5103907-5103926 | None:intergenic | 40.0% | |
| !!! | GTACTTTTTTGTGTGGTGTC+CGG | - | chr6_1:5104113-5104132 | Msa0870580:intron | 40.0% |
| !!! | TACTTTTTTGTGTGGTGTCC+GGG | - | chr6_1:5104114-5104133 | Msa0870580:intron | 40.0% |
| AATGTCTCGTGGACTTAGTT+CGG | + | chr6_1:5104185-5104204 | None:intergenic | 40.0% | |
| TGCTGAGAAAACAAAGAGAG+GGG | + | chr6_1:5104364-5104383 | None:intergenic | 40.0% | |
| GTGCTGAGAAAACAAAGAGA+GGG | + | chr6_1:5104365-5104384 | None:intergenic | 40.0% | |
| TGTGCTGAGAAAACAAAGAG+AGG | + | chr6_1:5104366-5104385 | None:intergenic | 40.0% | |
| TCAGCTCTTGATGAACCTAT+GGG | + | chr6_1:5104565-5104584 | None:intergenic | 40.0% | |
| TTCAGCTCTTGATGAACCTA+TGG | + | chr6_1:5104566-5104585 | None:intergenic | 40.0% | |
| TTAAACTCGATATCCTGCTC+TGG | - | chr6_1:5104811-5104830 | Msa0870580:intron | 40.0% | |
| !! | AGATTAGTAGGTTCTAGAGC+CGG | + | chr6_1:5104903-5104922 | None:intergenic | 40.0% |
| !! | CTCTAGAACCTACTAATCTG+AGG | - | chr6_1:5104904-5104923 | Msa0870580:intron | 40.0% |
| CTAGAACCTACTAATCTGAG+GGG | - | chr6_1:5104906-5104925 | Msa0870580:intron | 40.0% | |
| ATTTAGCCCCTCAGATTAGT+AGG | + | chr6_1:5104915-5104934 | None:intergenic | 40.0% | |
| ! | TGACTACGATTTTTGAACCC+TGG | - | chr6_1:5105157-5105176 | Msa0870580:intron | 40.0% |
| CTATGAAGCTGTGAAAATGG+AGG | - | chr6_1:5105271-5105290 | Msa0870580:intron | 40.0% | |
| GGAAGTGAAAAACACGTTTC+CGG | - | chr6_1:5099716-5099735 | Msa0870580:CDS | 40.0% | |
| ! | AGGGATCTCAGTATTTTGTG+TGG | - | chr6_1:5105533-5105552 | Msa0870580:intron | 40.0% |
| GCTGTCAAGGAACTATTCAA+AGG | - | chr6_1:5099926-5099945 | Msa0870580:CDS | 40.0% | |
| TTCAACGCTTACCTACCAAA+AGG | - | chr6_1:5099971-5099990 | Msa0870580:CDS | 40.0% | |
| TAGTTTCGTGGGCAAGATAA+AGG | - | chr6_1:5100060-5100079 | Msa0870580:intron | 40.0% | |
| AGAACACAAGACCATTACTG+AGG | - | chr6_1:5105897-5105916 | Msa0870580:intron | 40.0% | |
| CTCACTGTAAACCTCAGTAA+TGG | + | chr6_1:5105911-5105930 | None:intergenic | 40.0% | |
| CATTACTGAGGTTTACAGTG+AGG | - | chr6_1:5105909-5105928 | Msa0870580:intron | 40.0% | |
| ! | TGGTTTGTCCTCTATACGTT+TGG | - | chr6_1:5105937-5105956 | Msa0870580:intron | 40.0% |
| ! | ACAAAGTGCCAAACGTATAG+AGG | + | chr6_1:5105948-5105967 | None:intergenic | 40.0% |
| ! | CTAGGTTGCTACCCTTTTTA+AGG | - | chr6_1:5106053-5106072 | Msa0870580:intron | 40.0% |
| CTCAGATCATGATGACCAAA+TGG | + | chr6_1:5106153-5106172 | None:intergenic | 40.0% | |
| AGCAAAGGAAACGTGAGATA+AGG | - | chr6_1:5106223-5106242 | Msa0870580:intron | 40.0% | |
| GCAAAGGAAACGTGAGATAA+GGG | - | chr6_1:5106224-5106243 | Msa0870580:intron | 40.0% | |
| GTTAAGAAGGCTGAAGCTAA+TGG | - | chr6_1:5106297-5106316 | Msa0870580:intron | 40.0% | |
| TCGTGTAACAGGAGAACTAT+AGG | - | chr6_1:5106867-5106886 | Msa0870580:intron | 40.0% | |
| CGTGTAACAGGAGAACTATA+GGG | - | chr6_1:5106868-5106887 | Msa0870580:intron | 40.0% | |
| GTGTAACAGGAGAACTATAG+GGG | - | chr6_1:5106869-5106888 | Msa0870580:intron | 40.0% | |
| TGTAACAGGAGAACTATAGG+GGG | - | chr6_1:5106870-5106889 | Msa0870580:intron | 40.0% | |
| ATACATGACTGGCACGAATA+CGG | + | chr6_1:5107203-5107222 | None:intergenic | 40.0% | |
| AACGCTTGACTATACATGAC+TGG | + | chr6_1:5107214-5107233 | None:intergenic | 40.0% | |
| !! | GAAGGCACTTCAAGAATGTT+TGG | + | chr6_1:5107285-5107304 | None:intergenic | 40.0% |
| AAATCATGCTGCGACTATGA+AGG | - | chr6_1:5107582-5107601 | Msa0870580:intron | 40.0% | |
| TTACCTTGCGAGTTCTATTG+CGG | - | chr6_1:5107718-5107737 | Msa0870580:intron | 40.0% | |
| !! | TTGGAGCGTTGTGAAAATAC+TGG | - | chr6_1:5107834-5107853 | Msa0870580:intron | 40.0% |
| ATAGGCAGAATGAAACCTCA+AGG | + | chr6_1:5107907-5107926 | None:intergenic | 40.0% | |
| !!! | GCCTATTTGTTTTTGCAGAC+GGG | - | chr6_1:5107921-5107940 | Msa0870580:intron | 40.0% |
| ACCCGTCTGCAAAAACAAAT+AGG | + | chr6_1:5107925-5107944 | None:intergenic | 40.0% | |
| ! | AAATGACCATCAGTATCGAG+TGG | + | chr6_1:5108120-5108139 | None:intergenic | 40.0% |
| CAAAGAACACAAGCGTAAGA+TGG | - | chr6_1:5108173-5108192 | Msa0870580:intron | 40.0% | |
| GCTAAGGTCAAGTTCTTGAA+TGG | + | chr6_1:5108247-5108266 | None:intergenic | 40.0% | |
| TGTCATCAGTAGGTATAAGC+TGG | + | chr6_1:5108296-5108315 | None:intergenic | 40.0% | |
| AGCTTATACCTACTGATGAC+AGG | - | chr6_1:5108295-5108314 | Msa0870580:intron | 40.0% | |
| AAGGTTTACCTGTCATCAGT+AGG | + | chr6_1:5108306-5108325 | None:intergenic | 40.0% | |
| ACAGGTAAACCTTGCGTTAT+CGG | - | chr6_1:5108313-5108332 | Msa0870580:intron | 40.0% | |
| ATTGTTATACACATTGCGCG+CGG | - | chr6_1:5108462-5108481 | Msa0870580:CDS | 40.0% | |
| ATGGCAGGTGGAGTTGTTAA+TGG | - | chr6_1:5099633-5099652 | Msa0870580:CDS | 45.0% | |
| GTGGGCAAGATAAAGGTTGT+TGG | - | chr6_1:5100067-5100086 | Msa0870580:intron | 45.0% | |
| TGTAAGTTCGAAAGATGCGG+TGG | + | chr6_1:5100118-5100137 | None:intergenic | 45.0% | |
| TCTCTTGGAGTCACATGAGA+TGG | + | chr6_1:5100184-5100203 | None:intergenic | 45.0% | |
| CTCACTTGCACATCATCTCT+TGG | + | chr6_1:5100199-5100218 | None:intergenic | 45.0% | |
| ACCTTACCCATGAGGATTGA+AGG | - | chr6_1:5100238-5100257 | Msa0870580:intron | 45.0% | |
| ACCTTCAATCCTCATGGGTA+AGG | + | chr6_1:5100242-5100261 | None:intergenic | 45.0% | |
| TCACGACCTTCAATCCTCAT+GGG | + | chr6_1:5100247-5100266 | None:intergenic | 45.0% | |
| TCCCAAACGACTTTCACAAG+AGG | + | chr6_1:5100298-5100317 | None:intergenic | 45.0% | |
| CTTGTGAAAGTCGTTTGGGA+AGG | - | chr6_1:5100298-5100317 | Msa0870580:intron | 45.0% | |
| TGAAAGTTTGACGTGGGAGT+TGG | - | chr6_1:5100330-5100349 | Msa0870580:intron | 45.0% | |
| GGAGAAAAAGGGAGAAAGTG+AGG | - | chr6_1:5100687-5100706 | Msa0870580:intron | 45.0% | |
| ! | CAACCAATCTAAGGTAAGGG+TGG | - | chr6_1:5100752-5100771 | Msa0870580:intron | 45.0% |
| !! | GGGACTAGCTTCTCTAATAG+TGG | - | chr6_1:5100773-5100792 | Msa0870580:intron | 45.0% |
| TTGGGACCAAATTTGGGCTT+AGG | - | chr6_1:5101097-5101116 | Msa0870580:intron | 45.0% | |
| TGGGACCAAATTTGGGCTTA+GGG | - | chr6_1:5101098-5101117 | Msa0870580:intron | 45.0% | |
| GAAACACTCCAAGTAGGTCT+TGG | - | chr6_1:5101298-5101317 | Msa0870580:intron | 45.0% | |
| TCTGCATGTTACCCACATAG+AGG | + | chr6_1:5102077-5102096 | None:intergenic | 45.0% | |
| TGGGTAACATGCAGATAACC+AGG | - | chr6_1:5102082-5102101 | Msa0870580:CDS | 45.0% | |
| GAGGAATCAACTCACATCAG+CGG | + | chr6_1:5102113-5102132 | None:intergenic | 45.0% | |
| ACGCTTTCGTGGAAAAAAGC+GGG | - | chr6_1:5102485-5102504 | Msa0870580:intron | 45.0% | |
| GCAGCTAGGTTTACAAGTGA+AGG | - | chr6_1:5102782-5102801 | Msa0870580:CDS | 45.0% | |
| GGACAACATTGCAACGAAAG+CGG | - | chr6_1:5102809-5102828 | Msa0870580:CDS | 45.0% | |
| !! | GTTGAAGTTGGCTTGTACTC+AGG | + | chr6_1:5103463-5103482 | None:intergenic | 45.0% |
| ACACGAATGGAGAAGAGAAG+AGG | + | chr6_1:5103495-5103514 | None:intergenic | 45.0% | |
| GTGAGGTACACGACTTTAAG+AGG | + | chr6_1:5103570-5103589 | None:intergenic | 45.0% | |
| !!! | TTGGGGATAGGGTTTTAAGG+TGG | + | chr6_1:5103600-5103619 | None:intergenic | 45.0% |
| ! | AGGTTGGGGATAGGGTTTTA+AGG | + | chr6_1:5103603-5103622 | None:intergenic | 45.0% |
| !! | GTCAAGATTAGGTTGGGGAT+AGG | + | chr6_1:5103612-5103631 | None:intergenic | 45.0% |
| GACGCTGACATGTCAAGATT+AGG | + | chr6_1:5103623-5103642 | None:intergenic | 45.0% | |
| CACCAAAGAGGGATGATCTA+TGG | - | chr6_1:5103858-5103877 | Msa0870580:intron | 45.0% | |
| GACCATAGATCATCCCTCTT+TGG | + | chr6_1:5103863-5103882 | None:intergenic | 45.0% | |
| CATGATATATGCAAGGTCCG+CGG | + | chr6_1:5104147-5104166 | None:intergenic | 45.0% | |
| TGAAGCTGTGAAAATGGAGG+TGG | - | chr6_1:5105274-5105293 | Msa0870580:intron | 45.0% | |
| GGTGAAGGTGGAGTTGTTAA+TGG | - | chr6_1:5105301-5105320 | Msa0870580:intron | 45.0% | |
| GAAGGTGGAGTTGTTAATGG+CGG | - | chr6_1:5105304-5105323 | Msa0870580:intron | 45.0% | |
| TCAATGGTTGTCAGCTTCCT+GGG | + | chr6_1:5105346-5105365 | None:intergenic | 45.0% | |
| ATCAATGGTTGTCAGCTTCC+TGG | + | chr6_1:5105347-5105366 | None:intergenic | 45.0% | |
| TTTGTGTGGCGATTGTTTCC+AGG | - | chr6_1:5105547-5105566 | Msa0870580:intron | 45.0% | |
| !! | GAAGGTGCTAGCGAATTATC+TGG | + | chr6_1:5106117-5106136 | None:intergenic | 45.0% |
| AATGGAGCATGTTCTGTGGA+AGG | + | chr6_1:5106135-5106154 | None:intergenic | 45.0% | |
| TCCACAGAACATGCTCCATT+TGG | - | chr6_1:5106135-5106154 | Msa0870580:intron | 45.0% | |
| ACCAAATGGAGCATGTTCTG+TGG | + | chr6_1:5106139-5106158 | None:intergenic | 45.0% | |
| GTTTCGTCGTCATCCAAATC+AGG | + | chr6_1:5106186-5106205 | None:intergenic | 45.0% | |
| CGAAACAATGAACATGCGCA+AGG | - | chr6_1:5106200-5106219 | Msa0870580:intron | 45.0% | |
| GTTGAAGAAGCTCGTGTAAC+AGG | - | chr6_1:5106856-5106875 | Msa0870580:intron | 45.0% | |
| GTCAGCAAGGATACACGAAA+AGG | + | chr6_1:5107365-5107384 | None:intergenic | 45.0% | |
| TCGTATTTACTCGTGCCTTG+AGG | - | chr6_1:5107889-5107908 | Msa0870580:intron | 45.0% | |
| ! | ATCGGAATCATCCAAGTTGG+AGG | - | chr6_1:5108140-5108159 | Msa0870580:intron | 45.0% |
| GAACACAAGCGTAAGATGGA+TGG | - | chr6_1:5108177-5108196 | Msa0870580:intron | 45.0% | |
| CAAGAACTTGACCTTAGCGT+CGG | - | chr6_1:5108249-5108268 | Msa0870580:intron | 45.0% | |
| TGATAGAAGCCGATAACGCA+AGG | + | chr6_1:5108325-5108344 | None:intergenic | 45.0% | |
| AAGATGAACATTCAGGAGGC+AGG | + | chr6_1:5108353-5108372 | None:intergenic | 45.0% | |
| TGCCTCCTGAATGTTCATCT+TGG | - | chr6_1:5108352-5108371 | Msa0870580:intron | 45.0% | |
| CTCCAAGATGAACATTCAGG+AGG | + | chr6_1:5108357-5108376 | None:intergenic | 45.0% | |
| TGGCTCCAAGATGAACATTC+AGG | + | chr6_1:5108360-5108379 | None:intergenic | 45.0% | |
| TTTCTGATGTAGGCCTAAGC+TGG | - | chr6_1:5108437-5108456 | Msa0870580:CDS | 45.0% | |
| !! | TCTTTATATAAATTTATTAT+TGG | - | chr6_1:5102207-5102226 | Msa0870580:intron | 5.0% |
| !!! | ATTTTATAATATTTATATGT+TGG | - | chr6_1:5102439-5102458 | Msa0870580:intron | 5.0% |
| !!! | TTTTATAATATTTATATGTT+GGG | - | chr6_1:5102440-5102459 | Msa0870580:intron | 5.0% |
| !!! | TTATACAAAAATTTAAAATT+AGG | - | chr6_1:5102955-5102974 | Msa0870580:intron | 5.0% |
| !!! | TATACAAAAATTTAAAATTA+GGG | - | chr6_1:5102956-5102975 | Msa0870580:intron | 5.0% |
| !!! | ATCAATTAAATTTTAATTTT+TGG | - | chr6_1:5104494-5104513 | Msa0870580:intron | 5.0% |
| !! | AAAAATTGTAATAATATTTA+TGG | + | chr6_1:5107985-5108004 | None:intergenic | 5.0% |
| GCAGGTGGAGTTGTTAATGG+TGG | - | chr6_1:5099636-5099655 | Msa0870580:CDS | 50.0% | |
| GGTGGAGTTGTTAATGGTGG+TGG | - | chr6_1:5099639-5099658 | Msa0870580:CDS | 50.0% | |
| !! | GGAGTTGTTAATGGTGGTGG+AGG | - | chr6_1:5099642-5099661 | Msa0870580:CDS | 50.0% |
| TTGACAGCAGCTATGACACC+AGG | + | chr6_1:5099914-5099933 | None:intergenic | 50.0% | |
| !! | TGGTGTCATAGCTGCTGTCA+AGG | - | chr6_1:5099913-5099932 | Msa0870580:CDS | 50.0% |
| CGATTGAGACCTTACCCATG+AGG | - | chr6_1:5100230-5100249 | Msa0870580:CDS | 50.0% | |
| CTCACGACCTTCAATCCTCA+TGG | + | chr6_1:5100248-5100267 | None:intergenic | 50.0% | |
| CATGAGGATTGAAGGTCGTG+AGG | - | chr6_1:5100246-5100265 | Msa0870580:intron | 50.0% | |
| GAAAGTCGTTTGGGAAGGAG+CGG | - | chr6_1:5100303-5100322 | Msa0870580:intron | 50.0% | |
| GGCTGGTGAAAGTTTGACGT+GGG | - | chr6_1:5100324-5100343 | Msa0870580:intron | 50.0% | |
| GGAGTTGGAGAGTAAGATGC+TGG | - | chr6_1:5100345-5100364 | Msa0870580:CDS | 50.0% | |
| TGAGGGGCAGAATGGGAATA+AGG | - | chr6_1:5100597-5100616 | Msa0870580:intron | 50.0% | |
| GAGGGGCAGAATGGGAATAA+GGG | - | chr6_1:5100598-5100617 | Msa0870580:intron | 50.0% | |
| GAGGAGTCAGAGAAGAGAAG+AGG | - | chr6_1:5100706-5100725 | Msa0870580:intron | 50.0% | |
| GTCCCACCCTTACCTTAGAT+TGG | + | chr6_1:5100758-5100777 | None:intergenic | 50.0% | |
| ! | CTGTCAGACAGTTAGCTCTC+GGG | + | chr6_1:5101163-5101182 | None:intergenic | 50.0% |
| ! | GCTGTCAGACAGTTAGCTCT+CGG | + | chr6_1:5101164-5101183 | None:intergenic | 50.0% |
| TCACGTCAAACCAAAGCCAC+TGG | + | chr6_1:5101249-5101268 | None:intergenic | 50.0% | |
| !! | CATAGGGTTTCGGGTTGACT+TGG | + | chr6_1:5101357-5101376 | None:intergenic | 50.0% |
| CAAGTCAACCCGAAACCCTA+TGG | - | chr6_1:5101355-5101374 | Msa0870580:intron | 50.0% | |
| AGGAGAGCTTGATGCTCTGA+TGG | - | chr6_1:5101843-5101862 | Msa0870580:CDS | 50.0% | |
| GGAGTCGCTCTGATACGTAA+CGG | - | chr6_1:5102144-5102163 | Msa0870580:intron | 50.0% | |
| GAGTCGCTCTGATACGTAAC+GGG | - | chr6_1:5102145-5102164 | Msa0870580:intron | 50.0% | |
| ! | GCTCTGATACGTAACGGGAT+GGG | - | chr6_1:5102150-5102169 | Msa0870580:intron | 50.0% |
| ! | CTCTGATACGTAACGGGATG+GGG | - | chr6_1:5102151-5102170 | Msa0870580:intron | 50.0% |
| ! | ATATAAGGGAGGGTGCAGCT+AGG | - | chr6_1:5102768-5102787 | Msa0870580:CDS | 50.0% |
| ! | TGGACTTAGTTCGGTTGGTG+GGG | + | chr6_1:5104176-5104195 | None:intergenic | 50.0% |
| GTGGACTTAGTTCGGTTGGT+GGG | + | chr6_1:5104177-5104196 | None:intergenic | 50.0% | |
| TCTCGTGGACTTAGTTCGGT+TGG | + | chr6_1:5104181-5104200 | None:intergenic | 50.0% | |
| !! | CTCGATATCCTGCTCTGGAA+CGG | - | chr6_1:5104816-5104835 | Msa0870580:intron | 50.0% |
| ! | TGATTAGTCCGTTCCAGAGC+AGG | + | chr6_1:5104827-5104846 | None:intergenic | 50.0% |
| !! | CTGGAACGGACTAATCAGAG+TGG | - | chr6_1:5104830-5104849 | Msa0870580:intron | 50.0% |
| AATCAGAGTGGACCAGACCT+AGG | - | chr6_1:5104842-5104861 | Msa0870580:intron | 50.0% | |
| TGTGAAAATGGAGGTGGCAG+TGG | - | chr6_1:5105280-5105299 | Msa0870580:intron | 50.0% | |
| TGTGGCGATTGTTTCCAGGA+CGG | - | chr6_1:5105551-5105570 | Msa0870580:intron | 50.0% | |
| ACTCCTCGAGCAAATCACTG+TGG | + | chr6_1:5106080-5106099 | None:intergenic | 50.0% | |
| !! | GAGCGTCGAACATCCTGATT+TGG | - | chr6_1:5106170-5106189 | Msa0870580:intron | 50.0% |
| TGAACATGCGCAAGGAGCAA+AGG | - | chr6_1:5106208-5106227 | Msa0870580:intron | 50.0% | |
| AGACCGCAATAGAACTCGCA+AGG | + | chr6_1:5107724-5107743 | None:intergenic | 50.0% | |
| TTTCACTTGCGACACCAGCA+AGG | + | chr6_1:5107949-5107968 | None:intergenic | 50.0% | |
| TCAGAGCCACTCGATACTGA+TGG | - | chr6_1:5108111-5108130 | Msa0870580:intron | 50.0% | |
| AACAACGTTTGCCGACGCTA+AGG | + | chr6_1:5108263-5108282 | None:intergenic | 50.0% | |
| GTAGGTATAAGCTGGTAGCC+CGG | + | chr6_1:5108288-5108307 | None:intergenic | 50.0% | |
| GTTTGCAGGACTGACACTCC+TGG | - | chr6_1:5099893-5099912 | Msa0870580:CDS | 55.0% | |
| TGGGACGGTTGCGTATAGAG+TGG | - | chr6_1:5100087-5100106 | Msa0870580:intron | 55.0% | |
| GGGACGGTTGCGTATAGAGT+GGG | - | chr6_1:5100088-5100107 | Msa0870580:intron | 55.0% | |
| CGTGAGGTGAAGAAGCTGAG+AGG | - | chr6_1:5100262-5100281 | Msa0870580:intron | 55.0% | |
| GGTGAAGAAGCTGAGAGGCA+AGG | - | chr6_1:5100267-5100286 | Msa0870580:intron | 55.0% | |
| CGGCTGGTGAAAGTTTGACG+TGG | - | chr6_1:5100323-5100342 | Msa0870580:intron | 55.0% | |
| ATAGAGGCTGAGGGGCAGAA+TGG | - | chr6_1:5100589-5100608 | Msa0870580:intron | 55.0% | |
| TAGAGGCTGAGGGGCAGAAT+GGG | - | chr6_1:5100590-5100609 | Msa0870580:intron | 55.0% | |
| CTCACATCAGCGGTTACTCC+TGG | + | chr6_1:5102103-5102122 | None:intergenic | 55.0% | |
| GCGACTCCTAAGACGACAAG+AGG | + | chr6_1:5102132-5102151 | None:intergenic | 55.0% | |
| ! | CGCTCTGATACGTAACGGGA+TGG | - | chr6_1:5102149-5102168 | Msa0870580:intron | 55.0% |
| GTCAGCGTCCACATATGCCA+AGG | - | chr6_1:5103634-5103653 | Msa0870580:intron | 55.0% | |
| CGTGGACTTAGTTCGGTTGG+TGG | + | chr6_1:5104178-5104197 | None:intergenic | 55.0% | |
| AATGGAGGTGGCAGTGGTGA+AGG | - | chr6_1:5105286-5105305 | Msa0870580:intron | 55.0% | |
| GGTGGAGTTGTTAATGGCGG+TGG | - | chr6_1:5105307-5105326 | Msa0870580:intron | 55.0% | |
| GGAGTTGTTAATGGCGGTGG+AGG | - | chr6_1:5105310-5105329 | Msa0870580:intron | 55.0% | |
| GTTTCCAGGACGGACACTCA+TGG | - | chr6_1:5105561-5105580 | Msa0870580:intron | 55.0% | |
| TGGCGTCATAGCTGCTGTCA+AGG | - | chr6_1:5105581-5105600 | Msa0870580:intron | 55.0% | |
| !! | GGACCACAGTGATTTGCTCG+AGG | - | chr6_1:5106074-5106093 | Msa0870580:intron | 55.0% |
| ! | TTTGCAGACGGGTTCCTTGC+TGG | - | chr6_1:5107932-5107951 | Msa0870580:intron | 55.0% |
| GTCTTCGTCGTCCTCCAACT+TGG | + | chr6_1:5108154-5108173 | None:intergenic | 55.0% | |
| CGTCGGCAAACGTTGTTCTC+CGG | - | chr6_1:5108266-5108285 | Msa0870580:intron | 55.0% | |
| GTCGGCAAACGTTGTTCTCC+GGG | - | chr6_1:5108267-5108286 | Msa0870580:intron | 55.0% | |
| GTCGTAGCCAGCAATCACTG+TGG | - | chr6_1:5108514-5108533 | Msa0870580:CDS | 55.0% | |
| GTAGCCAGCAATCACTGTGG+AGG | - | chr6_1:5108517-5108536 | Msa0870580:CDS | 55.0% | |
| ACTGCCTCCACAGTGATTGC+TGG | + | chr6_1:5108524-5108543 | None:intergenic | 55.0% | |
| AAGGTCCGCGGTTCGAATCC+CGG | + | chr6_1:5104135-5104154 | None:intergenic | 60.0% | |
| ! | GTGGAGGTGCAAGTACTCCC+AGG | - | chr6_1:5099658-5099677 | Msa0870580:CDS | 60.0% |
| GGAGAAGTTGAGCTGCGCTG+AGG | - | chr6_1:5107255-5107274 | Msa0870580:intron | 60.0% | |
| TGGAGGCAGTGCGCATGGAT+TGG | - | chr6_1:5108534-5108553 | Msa0870580:CDS | 60.0% | |
| GTCGTTTGGGAAGGAGCGGC+TGG | - | chr6_1:5100307-5100326 | Msa0870580:intron | 65.0% | |
| GGTGTCCGGGATTCGAACCG+CGG | - | chr6_1:5104127-5104146 | Msa0870580:intron | 65.0% | |
| GGAGGTGGCAGTGGTGAAGG+TGG | - | chr6_1:5105289-5105308 | Msa0870580:intron | 65.0% | |
| GACGCCATGAGTGTCCGTCC+TGG | + | chr6_1:5105568-5105587 | None:intergenic | 65.0% | |
| GGTGACAAGTCAGCCGTCGC+AGG | - | chr6_1:5108483-5108502 | Msa0870580:CDS | 65.0% | |
| TCAGCCGTCGCAGGTTGCAG+CGG | - | chr6_1:5108492-5108511 | Msa0870580:CDS | 65.0% | |
| ACGACCGCTGCAACCTGCGA+CGG | + | chr6_1:5108499-5108518 | None:intergenic | 65.0% | |
| CACTGTGGAGGCAGTGCGCA+TGG | - | chr6_1:5108529-5108548 | Msa0870580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 5099627 | 5108564 | 5099627 | ID=Msa0870580;Name=Msa0870580 |
| chr6_1 | mRNA | 5099627 | 5108564 | 5099627 | ID=Msa0870580-mRNA-1;Parent=Msa0870580;Name=Msa0870580-mRNA-1;_AED=0.20;_eAED=0.29;_QI=0|0.12|0|1|1|1|9|0|442 |
| chr6_1 | exon | 5108395 | 5108564 | 5108395 | ID=Msa0870580-mRNA-1:exon:1665;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5102753 | 5102912 | 5102753 | ID=Msa0870580-mRNA-1:exon:1664;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5102261 | 5102359 | 5102261 | ID=Msa0870580-mRNA-1:exon:1663;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5101825 | 5102134 | 5101825 | ID=Msa0870580-mRNA-1:exon:1662;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5100840 | 5100976 | 5100840 | ID=Msa0870580-mRNA-1:exon:1661;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5100336 | 5100411 | 5100336 | ID=Msa0870580-mRNA-1:exon:1660;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5100223 | 5100252 | 5100223 | ID=Msa0870580-mRNA-1:exon:1659;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5099875 | 5100076 | 5099875 | ID=Msa0870580-mRNA-1:exon:1658;Parent=Msa0870580-mRNA-1 |
| chr6_1 | exon | 5099627 | 5099771 | 5099627 | ID=Msa0870580-mRNA-1:exon:1657;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5108395 | 5108564 | 5108395 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5102753 | 5102912 | 5102753 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5102261 | 5102359 | 5102261 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5101825 | 5102134 | 5101825 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5100840 | 5100976 | 5100840 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5100336 | 5100411 | 5100336 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5100223 | 5100252 | 5100223 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5099875 | 5100076 | 5099875 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| chr6_1 | CDS | 5099627 | 5099771 | 5099627 | ID=Msa0870580-mRNA-1:cds;Parent=Msa0870580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
