Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871170 | KEH24950.1 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 1.85e-82 | 259 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871170 | sp|Q9STS6|LBD27_ARATH | 50.476 | 105 | 51 | 1 | 3 | 107 | 33 | 136 | 1.11e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871170 | A0A072UGP3 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 8.83e-83 | 259 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0871170 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871170 | MtrunA17_Chr6g0452661 | 59.657 | 233 | 77 | 4 | 1 | 223 | 4 | 229 | 1.70e-86 | 259 |
| Msa0871170 | MtrunA17_Chr6g0452691 | 65.672 | 134 | 46 | 0 | 1 | 134 | 4 | 137 | 1.84e-56 | 181 |
| Msa0871170 | MtrunA17_Chr5g0439111 | 65.341 | 176 | 40 | 4 | 1 | 157 | 4 | 177 | 4.12e-56 | 181 |
| Msa0871170 | MtrunA17_Chr6g0452671 | 58.824 | 136 | 55 | 1 | 3 | 138 | 8 | 142 | 1.19e-52 | 171 |
| Msa0871170 | MtrunA17_Chr4g0055441 | 60.156 | 128 | 44 | 2 | 7 | 134 | 3 | 123 | 5.04e-45 | 150 |
| Msa0871170 | MtrunA17_Chr4g0059901 | 51.351 | 111 | 49 | 3 | 3 | 111 | 7 | 114 | 2.44e-30 | 115 |
| Msa0871170 | MtrunA17_Chr8g0342351 | 50.943 | 106 | 51 | 1 | 3 | 108 | 9 | 113 | 9.53e-29 | 111 |
| Msa0871170 | MtrunA17_Chr2g0330201 | 50.450 | 111 | 50 | 2 | 3 | 111 | 16 | 123 | 3.63e-27 | 108 |
| Msa0871170 | MtrunA17_Chr6g0449641 | 41.176 | 119 | 66 | 2 | 3 | 121 | 6 | 120 | 4.25e-26 | 100 |
| Msa0871170 | MtrunA17_Chr5g0402611 | 38.312 | 154 | 85 | 4 | 3 | 148 | 5 | 156 | 1.07e-25 | 104 |
| Msa0871170 | MtrunA17_Chr7g0227511 | 40.952 | 105 | 61 | 1 | 3 | 107 | 8 | 111 | 1.18e-25 | 100 |
| Msa0871170 | MtrunA17_Chr6g0449651 | 43.137 | 102 | 57 | 1 | 3 | 104 | 64 | 164 | 1.37e-25 | 101 |
| Msa0871170 | MtrunA17_Chr3g0115431 | 45.098 | 102 | 55 | 1 | 7 | 108 | 10 | 110 | 1.04e-24 | 99.4 |
| Msa0871170 | MtrunA17_Chr8g0353981 | 36.735 | 147 | 82 | 3 | 3 | 147 | 4 | 141 | 2.09e-24 | 99.0 |
| Msa0871170 | MtrunA17_Chr2g0311601 | 33.333 | 150 | 85 | 4 | 3 | 140 | 10 | 156 | 2.13e-24 | 97.1 |
| Msa0871170 | MtrunA17_Chr3g0106101 | 33.548 | 155 | 95 | 4 | 4 | 157 | 5 | 152 | 1.81e-23 | 95.1 |
| Msa0871170 | MtrunA17_Chr3g0097221 | 43.396 | 106 | 59 | 1 | 3 | 108 | 4 | 108 | 7.01e-23 | 96.3 |
| Msa0871170 | MtrunA17_Chr4g0043421 | 45.000 | 80 | 43 | 1 | 7 | 86 | 16 | 94 | 1.06e-22 | 92.8 |
| Msa0871170 | MtrunA17_Chr4g0058651 | 40.187 | 107 | 62 | 2 | 4 | 109 | 9 | 114 | 1.12e-22 | 93.2 |
| Msa0871170 | MtrunA17_Chr3g0117121 | 40.385 | 104 | 61 | 1 | 4 | 107 | 8 | 110 | 1.68e-22 | 92.8 |
| Msa0871170 | MtrunA17_Chr3g0114061 | 36.207 | 116 | 72 | 2 | 3 | 118 | 5 | 118 | 4.17e-22 | 90.9 |
| Msa0871170 | MtrunA17_Chr5g0437571 | 40.000 | 95 | 56 | 1 | 1 | 95 | 1 | 94 | 4.69e-22 | 90.9 |
| Msa0871170 | MtrunA17_Chr6g0449311 | 51.136 | 88 | 40 | 1 | 34 | 121 | 1 | 85 | 4.98e-22 | 90.1 |
| Msa0871170 | MtrunA17_Chr5g0437401 | 29.932 | 147 | 94 | 2 | 2 | 140 | 7 | 152 | 7.07e-22 | 90.9 |
| Msa0871170 | MtrunA17_Chr1g0200201 | 41.739 | 115 | 62 | 2 | 7 | 121 | 73 | 182 | 1.43e-21 | 91.3 |
| Msa0871170 | MtrunA17_Chr3g0129071 | 39.216 | 102 | 61 | 1 | 1 | 102 | 42 | 142 | 3.58e-21 | 90.5 |
| Msa0871170 | MtrunA17_Chr5g0438091 | 37.624 | 101 | 62 | 1 | 1 | 101 | 34 | 133 | 6.35e-21 | 88.6 |
| Msa0871170 | MtrunA17_Chr5g0432451 | 37.607 | 117 | 71 | 2 | 1 | 116 | 38 | 153 | 1.10e-20 | 89.0 |
| Msa0871170 | MtrunA17_Chr7g0225111 | 37.037 | 108 | 67 | 1 | 7 | 114 | 6 | 112 | 2.64e-20 | 84.7 |
| Msa0871170 | MtrunA17_Chr4g0030001 | 44.211 | 95 | 51 | 2 | 7 | 100 | 25 | 118 | 8.39e-20 | 85.5 |
| Msa0871170 | MtrunA17_Chr5g0444351 | 34.127 | 126 | 80 | 2 | 7 | 130 | 6 | 130 | 1.09e-19 | 84.0 |
| Msa0871170 | MtrunA17_Chr4g0040831 | 46.154 | 78 | 41 | 1 | 4 | 81 | 13 | 89 | 1.37e-19 | 85.1 |
| Msa0871170 | MtrunA17_Chr4g0058441 | 56.522 | 69 | 30 | 0 | 213 | 281 | 120 | 188 | 1.95e-19 | 88.6 |
| Msa0871170 | MtrunA17_Chr3g0113891 | 35.294 | 102 | 65 | 1 | 2 | 103 | 10 | 110 | 2.55e-19 | 84.0 |
| Msa0871170 | MtrunA17_Chr4g0075191 | 52.055 | 73 | 35 | 0 | 210 | 282 | 403 | 475 | 2.83e-19 | 88.6 |
| Msa0871170 | MtrunA17_Chr8g0341191 | 53.425 | 73 | 34 | 0 | 209 | 281 | 431 | 503 | 6.95e-19 | 87.4 |
| Msa0871170 | MtrunA17_Chr8g0374591 | 36.792 | 106 | 65 | 2 | 5 | 109 | 7 | 111 | 4.33e-18 | 79.0 |
| Msa0871170 | MtrunA17_Chr8g0381211 | 50.685 | 73 | 36 | 0 | 210 | 282 | 43 | 115 | 5.36e-18 | 84.3 |
| Msa0871170 | MtrunA17_Chr8g0392081 | 46.512 | 86 | 46 | 0 | 210 | 295 | 164 | 249 | 5.97e-18 | 83.6 |
| Msa0871170 | MtrunA17_Chr8g0351721 | 37.383 | 107 | 65 | 2 | 7 | 112 | 19 | 124 | 8.57e-17 | 77.8 |
| Msa0871170 | MtrunA17_Chr6g0460951 | 35.075 | 134 | 76 | 5 | 7 | 134 | 41 | 169 | 5.09e-16 | 75.9 |
| Msa0871170 | MtrunA17_Chr8g0374601 | 41.026 | 78 | 45 | 1 | 5 | 82 | 25 | 101 | 5.76e-16 | 76.6 |
| Msa0871170 | MtrunA17_Chr7g0260971 | 38.889 | 90 | 52 | 3 | 3 | 90 | 11 | 99 | 1.41e-15 | 74.3 |
| Msa0871170 | MtrunA17_Chr8g0374581 | 37.383 | 107 | 64 | 3 | 5 | 109 | 7 | 112 | 3.51e-15 | 73.6 |
| Msa0871170 | MtrunA17_Chr6g0460941 | 38.272 | 81 | 48 | 2 | 7 | 86 | 8 | 87 | 8.34e-15 | 68.9 |
| Msa0871170 | MtrunA17_Chr7g0245871 | 36.458 | 96 | 59 | 2 | 7 | 101 | 28 | 122 | 1.27e-14 | 72.4 |
| Msa0871170 | MtrunA17_Chr1g0184281 | 36.842 | 95 | 58 | 2 | 7 | 100 | 16 | 109 | 1.63e-14 | 71.2 |
| Msa0871170 | MtrunA17_Chr8g0351701 | 34.951 | 103 | 65 | 2 | 7 | 108 | 24 | 125 | 2.23e-14 | 71.2 |
| Msa0871170 | MtrunA17_Chr2g0326041 | 56.250 | 48 | 21 | 0 | 7 | 54 | 34 | 81 | 3.41e-14 | 67.4 |
| Msa0871170 | MtrunA17_Chr5g0435641 | 29.524 | 105 | 72 | 2 | 5 | 108 | 6 | 109 | 5.05e-14 | 69.7 |
| Msa0871170 | MtrunA17_Chr4g0046201 | 34.940 | 83 | 53 | 1 | 1 | 83 | 1 | 82 | 1.90e-13 | 69.3 |
| Msa0871170 | MtrunA17_Chr1g0184271 | 35.955 | 89 | 54 | 3 | 7 | 93 | 13 | 100 | 1.99e-13 | 68.6 |
| Msa0871170 | MtrunA17_Chr7g0261031 | 33.333 | 99 | 64 | 2 | 3 | 100 | 5 | 102 | 4.26e-13 | 67.8 |
| Msa0871170 | MtrunA17_Chr7g0245861 | 38.636 | 88 | 49 | 4 | 7 | 90 | 13 | 99 | 2.41e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871170 | AT3G47870.1 | 50.476 | 105 | 51 | 1 | 3 | 107 | 33 | 136 | 1.13e-28 | 113 |
| Msa0871170 | AT3G27650.1 | 45.098 | 102 | 55 | 1 | 3 | 104 | 36 | 136 | 4.08e-26 | 102 |
| Msa0871170 | AT3G13850.1 | 43.802 | 121 | 64 | 2 | 5 | 125 | 35 | 151 | 5.01e-26 | 104 |
| Msa0871170 | AT1G72980.1 | 42.969 | 128 | 65 | 3 | 3 | 127 | 10 | 132 | 7.99e-25 | 100 |
| Msa0871170 | AT1G65620.1 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 1.25e-24 | 99.0 |
| Msa0871170 | AT1G65620.4 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 1.25e-24 | 99.0 |
| Msa0871170 | AT1G65620.3 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 1.25e-24 | 99.0 |
| Msa0871170 | AT1G65620.5 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 1.25e-24 | 99.0 |
| Msa0871170 | AT1G65620.2 | 48.810 | 84 | 42 | 1 | 3 | 86 | 6 | 88 | 1.25e-24 | 99.0 |
| Msa0871170 | AT5G66870.1 | 43.956 | 91 | 50 | 1 | 3 | 93 | 4 | 93 | 3.66e-23 | 97.8 |
| Msa0871170 | AT3G26660.1 | 37.931 | 116 | 70 | 2 | 5 | 120 | 4 | 117 | 5.19e-23 | 92.4 |
| Msa0871170 | AT5G63090.4 | 39.623 | 106 | 63 | 1 | 4 | 109 | 9 | 113 | 1.13e-22 | 93.6 |
| Msa0871170 | AT5G63090.3 | 39.623 | 106 | 63 | 1 | 4 | 109 | 9 | 113 | 1.13e-22 | 93.6 |
| Msa0871170 | AT5G63090.2 | 39.623 | 106 | 63 | 1 | 4 | 109 | 9 | 113 | 1.13e-22 | 93.6 |
| Msa0871170 | AT5G63090.1 | 39.623 | 106 | 63 | 1 | 4 | 109 | 9 | 113 | 1.13e-22 | 93.6 |
| Msa0871170 | AT3G26620.1 | 38.462 | 104 | 63 | 1 | 5 | 108 | 4 | 106 | 1.30e-22 | 91.3 |
| Msa0871170 | AT1G31320.1 | 46.250 | 80 | 42 | 1 | 7 | 86 | 14 | 92 | 5.21e-22 | 91.3 |
| Msa0871170 | AT1G16530.1 | 33.333 | 159 | 92 | 7 | 2 | 152 | 10 | 162 | 6.66e-21 | 88.2 |
| Msa0871170 | AT3G11090.1 | 33.562 | 146 | 94 | 3 | 2 | 146 | 7 | 150 | 8.35e-21 | 87.8 |
| Msa0871170 | AT2G30130.1 | 33.613 | 119 | 78 | 1 | 4 | 122 | 6 | 123 | 1.02e-20 | 88.6 |
| Msa0871170 | AT2G28500.1 | 42.574 | 101 | 57 | 1 | 7 | 107 | 56 | 155 | 2.47e-20 | 88.2 |
| Msa0871170 | AT1G07900.1 | 43.617 | 94 | 52 | 1 | 7 | 100 | 34 | 126 | 3.20e-20 | 87.0 |
| Msa0871170 | AT2G23660.2 | 44.048 | 84 | 46 | 1 | 3 | 86 | 2 | 84 | 1.57e-19 | 87.8 |
| Msa0871170 | AT2G23660.3 | 44.048 | 84 | 46 | 1 | 3 | 86 | 2 | 84 | 1.57e-19 | 87.8 |
| Msa0871170 | AT2G23660.1 | 44.048 | 84 | 46 | 1 | 3 | 86 | 2 | 84 | 1.57e-19 | 87.8 |
| Msa0871170 | AT2G40470.2 | 40.698 | 86 | 50 | 1 | 1 | 86 | 15 | 99 | 2.49e-19 | 84.7 |
| Msa0871170 | AT2G40470.1 | 36.283 | 113 | 70 | 2 | 1 | 112 | 40 | 151 | 6.63e-19 | 84.3 |
| Msa0871170 | AT5G15060.1 | 47.945 | 73 | 37 | 1 | 7 | 78 | 18 | 90 | 9.33e-19 | 81.6 |
| Msa0871170 | AT3G50510.1 | 33.566 | 143 | 86 | 4 | 2 | 137 | 8 | 148 | 1.36e-18 | 82.8 |
| Msa0871170 | AT3G50510.2 | 33.566 | 143 | 86 | 4 | 2 | 137 | 8 | 148 | 1.36e-18 | 82.8 |
| Msa0871170 | AT2G30340.2 | 36.000 | 100 | 63 | 1 | 1 | 100 | 48 | 146 | 3.72e-18 | 83.2 |
| Msa0871170 | AT2G30340.1 | 36.000 | 100 | 63 | 1 | 1 | 100 | 47 | 145 | 4.01e-18 | 82.8 |
| Msa0871170 | AT1G06280.1 | 46.154 | 78 | 41 | 1 | 4 | 81 | 22 | 98 | 7.23e-18 | 80.9 |
| Msa0871170 | AT3G03760.1 | 35.294 | 102 | 64 | 2 | 7 | 107 | 52 | 152 | 1.25e-15 | 75.9 |
| Msa0871170 | AT4G00220.1 | 35.644 | 101 | 63 | 2 | 9 | 108 | 20 | 119 | 2.20e-15 | 74.7 |
| Msa0871170 | AT5G06080.1 | 35.165 | 91 | 56 | 3 | 5 | 93 | 6 | 95 | 8.43e-14 | 68.9 |
| Msa0871170 | AT2G42430.1 | 36.667 | 90 | 54 | 3 | 3 | 90 | 12 | 100 | 1.08e-13 | 70.1 |
| Msa0871170 | AT4G00210.1 | 31.250 | 128 | 86 | 2 | 7 | 133 | 12 | 138 | 1.53e-13 | 69.3 |
| Msa0871170 | AT2G42440.1 | 36.905 | 84 | 50 | 3 | 7 | 88 | 8 | 90 | 2.04e-13 | 69.3 |
| Msa0871170 | AT3G58190.1 | 34.021 | 97 | 62 | 2 | 7 | 102 | 12 | 107 | 2.74e-13 | 68.6 |
| Msa0871170 | AT2G45420.1 | 33.663 | 101 | 65 | 2 | 9 | 108 | 40 | 139 | 4.32e-13 | 68.6 |
| Msa0871170 | AT2G19820.1 | 36.250 | 80 | 51 | 0 | 7 | 86 | 13 | 92 | 1.30e-12 | 64.3 |
| Msa0871170 | AT2G31310.1 | 31.959 | 97 | 64 | 2 | 7 | 102 | 8 | 103 | 6.72e-12 | 63.9 |
| Msa0871170 | AT5G35900.1 | 27.068 | 133 | 88 | 2 | 7 | 139 | 6 | 129 | 5.64e-11 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCAAAATTTCCAGTAAA+TGG | 0.156816 | 6_1:-6070440 | Msa0871170:CDS |
| GGTGGTGTTGATGGCGTATA+TGG | 0.171314 | 6_1:-6069122 | Msa0871170:CDS |
| GGTTTATCTGCTGGGAAATA+AGG | 0.255580 | 6_1:+6070587 | None:intergenic |
| TCTCAAATTCCAAACAATTA+TGG | 0.259758 | 6_1:-6070272 | Msa0871170:CDS |
| TGGCGATAAATTTGATAGTT+TGG | 0.276950 | 6_1:-6070096 | Msa0871170:CDS |
| TATTACAAGTTTGGTCGATT+AGG | 0.287078 | 6_1:-6069093 | Msa0871170:CDS |
| GGCCTATATATGCTTCAATT+TGG | 0.287385 | 6_1:-6069058 | Msa0871170:CDS |
| GTATTCAAAGAGAATTTCTT+TGG | 0.329098 | 6_1:-6069309 | Msa0871170:intron |
| TCGATTAGGGAAGTGTTTCT+TGG | 0.330606 | 6_1:-6069079 | Msa0871170:CDS |
| GGAATTTGAGAACTAGTATA+AGG | 0.340003 | 6_1:+6070284 | None:intergenic |
| TGGGGAATATATTACAAGTT+TGG | 0.350549 | 6_1:-6069102 | Msa0871170:CDS |
| CTAACCCTAGTTGTATTCAT+AGG | 0.358430 | 6_1:+6070155 | None:intergenic |
| ACATGAAGACATCCATTTAC+TGG | 0.360415 | 6_1:+6070428 | None:intergenic |
| ATTACAAGTTTGGTCGATTA+GGG | 0.361593 | 6_1:-6069092 | Msa0871170:CDS |
| ATATTATCACCATAATTGTT+TGG | 0.367383 | 6_1:+6070263 | None:intergenic |
| CCGAAAAGCAATGGGAGATT+AGG | 0.383261 | 6_1:-6069229 | Msa0871170:CDS |
| GGCGACGCTCATCGTTTGTT+TGG | 0.384725 | 6_1:-6070554 | Msa0871170:CDS |
| TCCAAACGGAGTCCTCGTTT+TGG | 0.393833 | 6_1:-6069147 | Msa0871170:CDS |
| CACCAAATTGAAGCATATAT+AGG | 0.407169 | 6_1:+6069056 | None:intergenic |
| GTATTCATAGGATTTATATT+CGG | 0.419731 | 6_1:+6070167 | None:intergenic |
| TCCAAAACGAGGACTCCGTT+TGG | 0.426699 | 6_1:+6069146 | None:intergenic |
| TTTCTTTGGAGAGGGGTAAG+AGG | 0.442388 | 6_1:-6069295 | Msa0871170:CDS |
| AGGCAGTGCAAAAGTTTGTT+GGG | 0.452396 | 6_1:-6069275 | Msa0871170:CDS |
| TCTGTCTCCACTTTGTCAAA+AGG | 0.454118 | 6_1:+6069176 | None:intergenic |
| GTGGTGTTGATGGCGTATAT+GGG | 0.456208 | 6_1:-6069121 | Msa0871170:CDS |
| GAGGCAGTGCAAAAGTTTGT+TGG | 0.457695 | 6_1:-6069276 | Msa0871170:CDS |
| GATGTCATAAAAGAATTTGA+TGG | 0.461807 | 6_1:-6070116 | Msa0871170:CDS |
| CATGTTATTATGCTATATGA+AGG | 0.472351 | 6_1:-6070410 | Msa0871170:CDS |
| AAAGAGAATTTCTTTGGAGA+GGG | 0.490109 | 6_1:-6069303 | Msa0871170:intron |
| ATCAAAGAAGGAAGTGTACA+AGG | 0.491716 | 6_1:-6070625 | Msa0871170:CDS |
| TATGCTTCAATTTGGTGGAA+AGG | 0.494408 | 6_1:-6069050 | Msa0871170:CDS |
| AGGAGTGAAAGATGTTAGAA+TGG | 0.497014 | 6_1:-6069209 | Msa0871170:CDS |
| CAAAAGTTTGTTGGGAGATG+TGG | 0.505098 | 6_1:-6069267 | Msa0871170:CDS |
| TTTCAACATAGATGACCTCA+TGG | 0.512239 | 6_1:-6070060 | Msa0871170:CDS |
| CTATATATGCTTCAATTTGG+TGG | 0.513997 | 6_1:-6069055 | Msa0871170:CDS |
| AAAGATACTAAACGAAATCA+AGG | 0.515917 | 6_1:-6070516 | Msa0871170:CDS |
| TTTGTCAACCGAAAAGCAAT+GGG | 0.520392 | 6_1:-6069237 | Msa0871170:CDS |
| AGAGTATTATTAACATCATG+AGG | 0.523658 | 6_1:+6070203 | None:intergenic |
| CAAAGAGAATTTCTTTGGAG+AGG | 0.544868 | 6_1:-6069304 | Msa0871170:intron |
| TAAATCCTATGAATACAACT+AGG | 0.545521 | 6_1:-6070160 | Msa0871170:CDS |
| ATTTGTCAACCGAAAAGCAA+TGG | 0.555004 | 6_1:-6069238 | Msa0871170:CDS |
| TGGATGATGTTGACTTCAGA+AGG | 0.581921 | 6_1:-6070040 | Msa0871170:intron |
| AAATCCTATGAATACAACTA+GGG | 0.586418 | 6_1:-6070159 | Msa0871170:CDS |
| AAGAGAATTTCTTTGGAGAG+GGG | 0.586631 | 6_1:-6069302 | Msa0871170:CDS |
| CAGCATGCAAGTATCAAAGA+AGG | 0.595919 | 6_1:-6070637 | Msa0871170:CDS |
| TGGTGTTGATGGCGTATATG+GGG | 0.597565 | 6_1:-6069120 | Msa0871170:CDS |
| GAGACAGAAGTTGATCCAAA+CGG | 0.620828 | 6_1:-6069161 | Msa0871170:CDS |
| AGAACTAGTATAAGGTGGTG+AGG | 0.621247 | 6_1:+6070292 | None:intergenic |
| ATTTGAGAACTAGTATAAGG+TGG | 0.636229 | 6_1:+6070287 | None:intergenic |
| TCAAAGAAGGAAGTGTACAA+GGG | 0.643253 | 6_1:-6070624 | Msa0871170:CDS |
| GAGTATTATTAACATCATGA+GGG | 0.644601 | 6_1:+6070204 | None:intergenic |
| ACAACTAGGGTTAGCAACAG+TGG | 0.645530 | 6_1:-6070146 | Msa0871170:CDS |
| GACGATCATGAAAACAAACA+AGG | 0.674347 | 6_1:-6070666 | None:intergenic |
| CAACACCACCTTCCAAAACG+AGG | 0.674668 | 6_1:+6069135 | None:intergenic |
| CTAAACGAAATCAAGGACAA+AGG | 0.675964 | 6_1:-6070509 | Msa0871170:CDS |
| TGAAGTCAACATCATCCATG+AGG | 0.701852 | 6_1:+6070045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATTTTGTTTAACTT+TGG | - | chr6_1:6069674-6069693 | Msa0871170:intron | 10.0% |
| !!! | TTTTCAAAAAGATTTTTTTT+AGG | - | chr6_1:6070037-6070056 | Msa0871170:intron | 10.0% |
| !!! | ATATTTATTTTGTTTAACTT+TGG | - | chr6_1:6069674-6069693 | Msa0871170:intron | 10.0% |
| !!! | TTTTCAAAAAGATTTTTTTT+AGG | - | chr6_1:6070037-6070056 | Msa0871170:intron | 10.0% |
| !! | CATACATATACTTAATTATA+AGG | + | chr6_1:6069755-6069774 | None:intergenic | 15.0% |
| !! | CTTATAATTAAGTATATGTA+TGG | - | chr6_1:6069753-6069772 | Msa0871170:intron | 15.0% |
| !!! | ATCCCAATATATTTTATATA+TGG | - | chr6_1:6070090-6070109 | Msa0871170:CDS | 15.0% |
| !! | CACCATATATAAAATATATT+GGG | + | chr6_1:6070095-6070114 | None:intergenic | 15.0% |
| !! | TCACCATATATAAAATATAT+TGG | + | chr6_1:6070096-6070115 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATATGGTGA+TGG | - | chr6_1:6070096-6070115 | Msa0871170:CDS | 15.0% |
| !! | TCAATTCTGTTTAAATATTT+AGG | - | chr6_1:6070148-6070167 | Msa0871170:CDS | 15.0% |
| !! | CATACATATACTTAATTATA+AGG | + | chr6_1:6069755-6069774 | None:intergenic | 15.0% |
| !! | CTTATAATTAAGTATATGTA+TGG | - | chr6_1:6069753-6069772 | Msa0871170:intron | 15.0% |
| !!! | ATCCCAATATATTTTATATA+TGG | - | chr6_1:6070090-6070109 | Msa0871170:CDS | 15.0% |
| !! | CACCATATATAAAATATATT+GGG | + | chr6_1:6070095-6070114 | None:intergenic | 15.0% |
| !! | TCACCATATATAAAATATAT+TGG | + | chr6_1:6070096-6070115 | None:intergenic | 15.0% |
| !!! | ATATATTTTATATATGGTGA+TGG | - | chr6_1:6070096-6070115 | Msa0871170:CDS | 15.0% |
| !! | TCAATTCTGTTTAAATATTT+AGG | - | chr6_1:6070148-6070167 | Msa0871170:CDS | 15.0% |
| !! | ATATTATCACCATAATTGTT+TGG | + | chr6_1:6069411-6069430 | None:intergenic | 20.0% |
| !! | GTATTCATAGGATTTATATT+CGG | + | chr6_1:6069507-6069526 | None:intergenic | 20.0% |
| !! | GATTAAAAGATATGCAATAA+AGG | + | chr6_1:6069720-6069739 | None:intergenic | 20.0% |
| !! | ACCATTTATATGACAATTTA+TGG | - | chr6_1:6069842-6069861 | Msa0871170:intron | 20.0% |
| !! | CCATTTATATGACAATTTAT+GGG | - | chr6_1:6069843-6069862 | Msa0871170:intron | 20.0% |
| !!! | GTTTAAATATTTAGGTTTAC+TGG | - | chr6_1:6070156-6070175 | Msa0871170:CDS | 20.0% |
| !! | GAATTTAATCTCCTATTAAA+GGG | + | chr6_1:6070217-6070236 | None:intergenic | 20.0% |
| !! | AGAATTTAATCTCCTATTAA+AGG | + | chr6_1:6070218-6070237 | None:intergenic | 20.0% |
| !! | TTAATAGGAGATTAAATTCT+TGG | - | chr6_1:6070218-6070237 | Msa0871170:CDS | 20.0% |
| !! | TAATAGGAGATTAAATTCTT+GGG | - | chr6_1:6070219-6070238 | Msa0871170:CDS | 20.0% |
| !!! | GAGAAAAAGTATATTAGTTT+TGG | - | chr6_1:6070241-6070260 | Msa0871170:CDS | 20.0% |
| !!! | AAAAAGTATATTAGTTTTGG+TGG | - | chr6_1:6070244-6070263 | Msa0871170:CDS | 20.0% |
| !!! | AAAAGTATATTAGTTTTGGT+GGG | - | chr6_1:6070245-6070264 | Msa0871170:CDS | 20.0% |
| !! | ATATTATCACCATAATTGTT+TGG | + | chr6_1:6069411-6069430 | None:intergenic | 20.0% |
| !! | GTATTCATAGGATTTATATT+CGG | + | chr6_1:6069507-6069526 | None:intergenic | 20.0% |
| !! | GATTAAAAGATATGCAATAA+AGG | + | chr6_1:6069720-6069739 | None:intergenic | 20.0% |
| !! | ACCATTTATATGACAATTTA+TGG | - | chr6_1:6069842-6069861 | Msa0871170:intron | 20.0% |
| !! | CCATTTATATGACAATTTAT+GGG | - | chr6_1:6069843-6069862 | Msa0871170:intron | 20.0% |
| !!! | GTTTAAATATTTAGGTTTAC+TGG | - | chr6_1:6070156-6070175 | Msa0871170:CDS | 20.0% |
| !! | GAATTTAATCTCCTATTAAA+GGG | + | chr6_1:6070217-6070236 | None:intergenic | 20.0% |
| !! | AGAATTTAATCTCCTATTAA+AGG | + | chr6_1:6070218-6070237 | None:intergenic | 20.0% |
| !! | TTAATAGGAGATTAAATTCT+TGG | - | chr6_1:6070218-6070237 | Msa0871170:CDS | 20.0% |
| !! | TAATAGGAGATTAAATTCTT+GGG | - | chr6_1:6070219-6070238 | Msa0871170:CDS | 20.0% |
| !!! | GAGAAAAAGTATATTAGTTT+TGG | - | chr6_1:6070241-6070260 | Msa0871170:CDS | 20.0% |
| !!! | AAAAAGTATATTAGTTTTGG+TGG | - | chr6_1:6070244-6070263 | Msa0871170:CDS | 20.0% |
| !!! | AAAAGTATATTAGTTTTGGT+GGG | - | chr6_1:6070245-6070264 | Msa0871170:CDS | 20.0% |
| !! | GTTTAGTATCTTTTGTATGT+TGG | + | chr6_1:6069148-6069167 | None:intergenic | 25.0% |
| ! | AAAGATACTAAACGAAATCA+AGG | - | chr6_1:6069155-6069174 | Msa0871170:CDS | 25.0% |
| ! | CATGTTATTATGCTATATGA+AGG | - | chr6_1:6069261-6069280 | Msa0871170:CDS | 25.0% |
| ! | TCTCAAATTCCAAACAATTA+TGG | - | chr6_1:6069399-6069418 | Msa0871170:intron | 25.0% |
| ! | GAGTATTATTAACATCATGA+GGG | + | chr6_1:6069470-6069489 | None:intergenic | 25.0% |
| !! | AGAGTATTATTAACATCATG+AGG | + | chr6_1:6069471-6069490 | None:intergenic | 25.0% |
| ! | TAAATCCTATGAATACAACT+AGG | - | chr6_1:6069511-6069530 | Msa0871170:intron | 25.0% |
| ! | AAATCCTATGAATACAACTA+GGG | - | chr6_1:6069512-6069531 | Msa0871170:intron | 25.0% |
| ! | GATGTCATAAAAGAATTTGA+TGG | - | chr6_1:6069555-6069574 | Msa0871170:intron | 25.0% |
| ! | TGTTTGTTCAATGAGTATTT+GGG | - | chr6_1:6069780-6069799 | Msa0871170:intron | 25.0% |
| ! | CCCATAAATTGTCATATAAA+TGG | + | chr6_1:6069846-6069865 | None:intergenic | 25.0% |
| ! | GAAAAGTAGATAGTGTAATT+TGG | - | chr6_1:6069885-6069904 | Msa0871170:intron | 25.0% |
| ! | CATAAAGAGTTACTTCTAAT+AGG | - | chr6_1:6069908-6069927 | Msa0871170:intron | 25.0% |
| ! | AAGAAACTTTAGATAACCAT+TGG | - | chr6_1:6069960-6069979 | Msa0871170:intron | 25.0% |
| !! | TAGGAAACTTTTCAAATGTT+TGG | - | chr6_1:6070056-6070075 | Msa0871170:CDS | 25.0% |
| !! | AAACTTTTCAAATGTTTGGT+GGG | - | chr6_1:6070060-6070079 | Msa0871170:CDS | 25.0% |
| !!! | AATTTCTAAGATTGTAGTGA+AGG | - | chr6_1:6070124-6070143 | Msa0871170:CDS | 25.0% |
| !! | AAATATTTAGGTTTACTGGT+TGG | - | chr6_1:6070160-6070179 | Msa0871170:CDS | 25.0% |
| !! | AATATTTAGGTTTACTGGTT+GGG | - | chr6_1:6070161-6070180 | Msa0871170:CDS | 25.0% |
| !! | TTCAATGTAGACAATTTTCT+TGG | + | chr6_1:6070193-6070212 | None:intergenic | 25.0% |
| ! | AAAAAGAGAGACAAAAAATG+GGG | + | chr6_1:6070306-6070325 | None:intergenic | 25.0% |
| ! | CAAAAAGAGAGACAAAAAAT+GGG | + | chr6_1:6070307-6070326 | None:intergenic | 25.0% |
| ! | GTATTCAAAGAGAATTTCTT+TGG | - | chr6_1:6070362-6070381 | Msa0871170:CDS | 25.0% |
| !! | GTTTAGTATCTTTTGTATGT+TGG | + | chr6_1:6069148-6069167 | None:intergenic | 25.0% |
| ! | AAAGATACTAAACGAAATCA+AGG | - | chr6_1:6069155-6069174 | Msa0871170:CDS | 25.0% |
| ! | CATGTTATTATGCTATATGA+AGG | - | chr6_1:6069261-6069280 | Msa0871170:CDS | 25.0% |
| ! | TCTCAAATTCCAAACAATTA+TGG | - | chr6_1:6069399-6069418 | Msa0871170:intron | 25.0% |
| ! | GAGTATTATTAACATCATGA+GGG | + | chr6_1:6069470-6069489 | None:intergenic | 25.0% |
| !! | AGAGTATTATTAACATCATG+AGG | + | chr6_1:6069471-6069490 | None:intergenic | 25.0% |
| ! | TAAATCCTATGAATACAACT+AGG | - | chr6_1:6069511-6069530 | Msa0871170:intron | 25.0% |
| ! | AAATCCTATGAATACAACTA+GGG | - | chr6_1:6069512-6069531 | Msa0871170:intron | 25.0% |
| ! | GATGTCATAAAAGAATTTGA+TGG | - | chr6_1:6069555-6069574 | Msa0871170:intron | 25.0% |
| ! | TGTTTGTTCAATGAGTATTT+GGG | - | chr6_1:6069780-6069799 | Msa0871170:intron | 25.0% |
| ! | CCCATAAATTGTCATATAAA+TGG | + | chr6_1:6069846-6069865 | None:intergenic | 25.0% |
| ! | GAAAAGTAGATAGTGTAATT+TGG | - | chr6_1:6069885-6069904 | Msa0871170:intron | 25.0% |
| ! | CATAAAGAGTTACTTCTAAT+AGG | - | chr6_1:6069908-6069927 | Msa0871170:intron | 25.0% |
| ! | AAGAAACTTTAGATAACCAT+TGG | - | chr6_1:6069960-6069979 | Msa0871170:intron | 25.0% |
| !! | TAGGAAACTTTTCAAATGTT+TGG | - | chr6_1:6070056-6070075 | Msa0871170:CDS | 25.0% |
| !! | AAACTTTTCAAATGTTTGGT+GGG | - | chr6_1:6070060-6070079 | Msa0871170:CDS | 25.0% |
| !!! | AATTTCTAAGATTGTAGTGA+AGG | - | chr6_1:6070124-6070143 | Msa0871170:CDS | 25.0% |
| !! | AAATATTTAGGTTTACTGGT+TGG | - | chr6_1:6070160-6070179 | Msa0871170:CDS | 25.0% |
| !! | AATATTTAGGTTTACTGGTT+GGG | - | chr6_1:6070161-6070180 | Msa0871170:CDS | 25.0% |
| !! | TTCAATGTAGACAATTTTCT+TGG | + | chr6_1:6070193-6070212 | None:intergenic | 25.0% |
| ! | AAAAAGAGAGACAAAAAATG+GGG | + | chr6_1:6070306-6070325 | None:intergenic | 25.0% |
| ! | CAAAAAGAGAGACAAAAAAT+GGG | + | chr6_1:6070307-6070326 | None:intergenic | 25.0% |
| ! | GTATTCAAAGAGAATTTCTT+TGG | - | chr6_1:6070362-6070381 | Msa0871170:CDS | 25.0% |
| !!! | ACATTTTTGGTTTATCTGCT+GGG | + | chr6_1:6069095-6069114 | None:intergenic | 30.0% |
| !!! | AACATTTTTGGTTTATCTGC+TGG | + | chr6_1:6069096-6069115 | None:intergenic | 30.0% |
| GCAGATAAACCAAAAATGTT+TGG | - | chr6_1:6069096-6069115 | Msa0871170:CDS | 30.0% | |
| ATTTGAGAACTAGTATAAGG+TGG | + | chr6_1:6069387-6069406 | None:intergenic | 30.0% | |
| GGAATTTGAGAACTAGTATA+AGG | + | chr6_1:6069390-6069409 | None:intergenic | 30.0% | |
| ! | TGGCGATAAATTTGATAGTT+TGG | - | chr6_1:6069575-6069594 | Msa0871170:intron | 30.0% |
| GTGTTTGTTCAATGAGTATT+TGG | - | chr6_1:6069779-6069798 | Msa0871170:intron | 30.0% | |
| GTTTGTTCAATGAGTATTTG+GGG | - | chr6_1:6069781-6069800 | Msa0871170:intron | 30.0% | |
| TTTGTTCAATGAGTATTTGG+GGG | - | chr6_1:6069782-6069801 | Msa0871170:intron | 30.0% | |
| ACTTCTAATAGGATTGCATT+TGG | - | chr6_1:6069919-6069938 | Msa0871170:intron | 30.0% | |
| TGAAAAGTTAAACGTCAAAC+CGG | + | chr6_1:6070023-6070042 | None:intergenic | 30.0% | |
| ! | GAAACTTTTCAAATGTTTGG+TGG | - | chr6_1:6070059-6070078 | Msa0871170:CDS | 30.0% |
| !! | AACTTTTCAAATGTTTGGTG+GGG | - | chr6_1:6070061-6070080 | Msa0871170:CDS | 30.0% |
| ! | ATATTTAGGTTTACTGGTTG+GGG | - | chr6_1:6070162-6070181 | Msa0871170:CDS | 30.0% |
| CTACATTGAATCCCTTTAAT+AGG | - | chr6_1:6070203-6070222 | Msa0871170:CDS | 30.0% | |
| !! | TTATCGACTTTAGTGCTAAA+TGG | - | chr6_1:6070277-6070296 | Msa0871170:CDS | 30.0% |
| CCAAAAAGAGAGACAAAAAA+TGG | + | chr6_1:6070308-6070327 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTCTCTCTTTT+TGG | - | chr6_1:6070305-6070324 | Msa0871170:CDS | 30.0% |
| ! | AAAGAGAATTTCTTTGGAGA+GGG | - | chr6_1:6070368-6070387 | Msa0871170:CDS | 30.0% |
| TGGGGAATATATTACAAGTT+TGG | - | chr6_1:6070569-6070588 | Msa0871170:CDS | 30.0% | |
| TATTACAAGTTTGGTCGATT+AGG | - | chr6_1:6070578-6070597 | Msa0871170:CDS | 30.0% | |
| ATTACAAGTTTGGTCGATTA+GGG | - | chr6_1:6070579-6070598 | Msa0871170:CDS | 30.0% | |
| CACCAAATTGAAGCATATAT+AGG | + | chr6_1:6070618-6070637 | None:intergenic | 30.0% | |
| CTATATATGCTTCAATTTGG+TGG | - | chr6_1:6070616-6070635 | Msa0871170:CDS | 30.0% | |
| !!! | TGGAAAGGATTTAGCTTTTT+CGG | - | chr6_1:6070636-6070655 | Msa0871170:CDS | 30.0% |
| !!! | TTTAGCTTTTTCGGAAAATC+TGG | - | chr6_1:6070645-6070664 | Msa0871170:CDS | 30.0% |
| !!! | ACATTTTTGGTTTATCTGCT+GGG | + | chr6_1:6069095-6069114 | None:intergenic | 30.0% |
| !!! | AACATTTTTGGTTTATCTGC+TGG | + | chr6_1:6069096-6069115 | None:intergenic | 30.0% |
| GCAGATAAACCAAAAATGTT+TGG | - | chr6_1:6069096-6069115 | Msa0871170:CDS | 30.0% | |
| ATTTGAGAACTAGTATAAGG+TGG | + | chr6_1:6069387-6069406 | None:intergenic | 30.0% | |
| GGAATTTGAGAACTAGTATA+AGG | + | chr6_1:6069390-6069409 | None:intergenic | 30.0% | |
| ! | TGGCGATAAATTTGATAGTT+TGG | - | chr6_1:6069575-6069594 | Msa0871170:intron | 30.0% |
| GTGTTTGTTCAATGAGTATT+TGG | - | chr6_1:6069779-6069798 | Msa0871170:intron | 30.0% | |
| GTTTGTTCAATGAGTATTTG+GGG | - | chr6_1:6069781-6069800 | Msa0871170:intron | 30.0% | |
| TTTGTTCAATGAGTATTTGG+GGG | - | chr6_1:6069782-6069801 | Msa0871170:intron | 30.0% | |
| ACTTCTAATAGGATTGCATT+TGG | - | chr6_1:6069919-6069938 | Msa0871170:intron | 30.0% | |
| TGAAAAGTTAAACGTCAAAC+CGG | + | chr6_1:6070023-6070042 | None:intergenic | 30.0% | |
| ! | GAAACTTTTCAAATGTTTGG+TGG | - | chr6_1:6070059-6070078 | Msa0871170:CDS | 30.0% |
| !! | AACTTTTCAAATGTTTGGTG+GGG | - | chr6_1:6070061-6070080 | Msa0871170:CDS | 30.0% |
| ! | ATATTTAGGTTTACTGGTTG+GGG | - | chr6_1:6070162-6070181 | Msa0871170:CDS | 30.0% |
| CTACATTGAATCCCTTTAAT+AGG | - | chr6_1:6070203-6070222 | Msa0871170:CDS | 30.0% | |
| !! | TTATCGACTTTAGTGCTAAA+TGG | - | chr6_1:6070277-6070296 | Msa0871170:CDS | 30.0% |
| CCAAAAAGAGAGACAAAAAA+TGG | + | chr6_1:6070308-6070327 | None:intergenic | 30.0% | |
| !!! | CCATTTTTTGTCTCTCTTTT+TGG | - | chr6_1:6070305-6070324 | Msa0871170:CDS | 30.0% |
| ! | AAAGAGAATTTCTTTGGAGA+GGG | - | chr6_1:6070368-6070387 | Msa0871170:CDS | 30.0% |
| TGGGGAATATATTACAAGTT+TGG | - | chr6_1:6070569-6070588 | Msa0871170:CDS | 30.0% | |
| TATTACAAGTTTGGTCGATT+AGG | - | chr6_1:6070578-6070597 | Msa0871170:CDS | 30.0% | |
| ATTACAAGTTTGGTCGATTA+GGG | - | chr6_1:6070579-6070598 | Msa0871170:CDS | 30.0% | |
| CACCAAATTGAAGCATATAT+AGG | + | chr6_1:6070618-6070637 | None:intergenic | 30.0% | |
| CTATATATGCTTCAATTTGG+TGG | - | chr6_1:6070616-6070635 | Msa0871170:CDS | 30.0% | |
| !!! | TGGAAAGGATTTAGCTTTTT+CGG | - | chr6_1:6070636-6070655 | Msa0871170:CDS | 30.0% |
| !!! | TTTAGCTTTTTCGGAAAATC+TGG | - | chr6_1:6070645-6070664 | Msa0871170:CDS | 30.0% |
| ! | ATCAAAGAAGGAAGTGTACA+AGG | - | chr6_1:6069046-6069065 | Msa0871170:CDS | 35.0% |
| ! | TCAAAGAAGGAAGTGTACAA+GGG | - | chr6_1:6069047-6069066 | Msa0871170:CDS | 35.0% |
| CTAAACGAAATCAAGGACAA+AGG | - | chr6_1:6069162-6069181 | Msa0871170:CDS | 35.0% | |
| CGTGCAAAATTTCCAGTAAA+TGG | - | chr6_1:6069231-6069250 | Msa0871170:CDS | 35.0% | |
| ACATGAAGACATCCATTTAC+TGG | + | chr6_1:6069246-6069265 | None:intergenic | 35.0% | |
| CTAACCCTAGTTGTATTCAT+AGG | + | chr6_1:6069519-6069538 | None:intergenic | 35.0% | |
| TTTCAACATAGATGACCTCA+TGG | - | chr6_1:6069611-6069630 | Msa0871170:intron | 35.0% | |
| AGATAACCATTGGACGTTAA+CGG | - | chr6_1:6069970-6069989 | Msa0871170:intron | 35.0% | |
| CATCTCTAAACCTATCAACA+TGG | + | chr6_1:6069996-6070015 | None:intergenic | 35.0% | |
| ! | CATGTTGATAGGTTTAGAGA+TGG | - | chr6_1:6069994-6070013 | Msa0871170:intron | 35.0% |
| !! | TTTTTGGAAGATGTCGATCA+AGG | - | chr6_1:6070321-6070340 | Msa0871170:CDS | 35.0% |
| ! | CAAAGAGAATTTCTTTGGAG+AGG | - | chr6_1:6070367-6070386 | Msa0871170:CDS | 35.0% |
| ! | AAGAGAATTTCTTTGGAGAG+GGG | - | chr6_1:6070369-6070388 | Msa0871170:CDS | 35.0% |
| ATTTGTCAACCGAAAAGCAA+TGG | - | chr6_1:6070433-6070452 | Msa0871170:CDS | 35.0% | |
| TTTGTCAACCGAAAAGCAAT+GGG | - | chr6_1:6070434-6070453 | Msa0871170:CDS | 35.0% | |
| AGGAGTGAAAGATGTTAGAA+TGG | - | chr6_1:6070462-6070481 | Msa0871170:CDS | 35.0% | |
| ! | ATCTAAGCCTTTTGACAAAG+TGG | - | chr6_1:6070488-6070507 | Msa0871170:CDS | 35.0% |
| GGCCTATATATGCTTCAATT+TGG | - | chr6_1:6070613-6070632 | Msa0871170:CDS | 35.0% | |
| ! | TATGCTTCAATTTGGTGGAA+AGG | - | chr6_1:6070621-6070640 | Msa0871170:CDS | 35.0% |
| ! | ATCAAAGAAGGAAGTGTACA+AGG | - | chr6_1:6069046-6069065 | Msa0871170:CDS | 35.0% |
| ! | TCAAAGAAGGAAGTGTACAA+GGG | - | chr6_1:6069047-6069066 | Msa0871170:CDS | 35.0% |
| CTAAACGAAATCAAGGACAA+AGG | - | chr6_1:6069162-6069181 | Msa0871170:CDS | 35.0% | |
| CGTGCAAAATTTCCAGTAAA+TGG | - | chr6_1:6069231-6069250 | Msa0871170:CDS | 35.0% | |
| ACATGAAGACATCCATTTAC+TGG | + | chr6_1:6069246-6069265 | None:intergenic | 35.0% | |
| CTAACCCTAGTTGTATTCAT+AGG | + | chr6_1:6069519-6069538 | None:intergenic | 35.0% | |
| TTTCAACATAGATGACCTCA+TGG | - | chr6_1:6069611-6069630 | Msa0871170:intron | 35.0% | |
| AGATAACCATTGGACGTTAA+CGG | - | chr6_1:6069970-6069989 | Msa0871170:intron | 35.0% | |
| CATCTCTAAACCTATCAACA+TGG | + | chr6_1:6069996-6070015 | None:intergenic | 35.0% | |
| ! | CATGTTGATAGGTTTAGAGA+TGG | - | chr6_1:6069994-6070013 | Msa0871170:intron | 35.0% |
| !! | TTTTTGGAAGATGTCGATCA+AGG | - | chr6_1:6070321-6070340 | Msa0871170:CDS | 35.0% |
| ! | CAAAGAGAATTTCTTTGGAG+AGG | - | chr6_1:6070367-6070386 | Msa0871170:CDS | 35.0% |
| ! | AAGAGAATTTCTTTGGAGAG+GGG | - | chr6_1:6070369-6070388 | Msa0871170:CDS | 35.0% |
| ATTTGTCAACCGAAAAGCAA+TGG | - | chr6_1:6070433-6070452 | Msa0871170:CDS | 35.0% | |
| TTTGTCAACCGAAAAGCAAT+GGG | - | chr6_1:6070434-6070453 | Msa0871170:CDS | 35.0% | |
| AGGAGTGAAAGATGTTAGAA+TGG | - | chr6_1:6070462-6070481 | Msa0871170:CDS | 35.0% | |
| ! | ATCTAAGCCTTTTGACAAAG+TGG | - | chr6_1:6070488-6070507 | Msa0871170:CDS | 35.0% |
| GGCCTATATATGCTTCAATT+TGG | - | chr6_1:6070613-6070632 | Msa0871170:CDS | 35.0% | |
| ! | TATGCTTCAATTTGGTGGAA+AGG | - | chr6_1:6070621-6070640 | Msa0871170:CDS | 35.0% |
| CAGCATGCAAGTATCAAAGA+AGG | - | chr6_1:6069034-6069053 | Msa0871170:CDS | 40.0% | |
| GGTTTATCTGCTGGGAAATA+AGG | + | chr6_1:6069087-6069106 | None:intergenic | 40.0% | |
| AGAACTAGTATAAGGTGGTG+AGG | + | chr6_1:6069382-6069401 | None:intergenic | 40.0% | |
| TGAAGTCAACATCATCCATG+AGG | + | chr6_1:6069629-6069648 | None:intergenic | 40.0% | |
| !! | TGGATGATGTTGACTTCAGA+AGG | - | chr6_1:6069631-6069650 | Msa0871170:intron | 40.0% |
| ATAGGTTTAGAGATGGCATC+CGG | - | chr6_1:6070001-6070020 | Msa0871170:intron | 40.0% | |
| ! | AGGCAGTGCAAAAGTTTGTT+GGG | - | chr6_1:6070396-6070415 | Msa0871170:CDS | 40.0% |
| !! | CAAAAGTTTGTTGGGAGATG+TGG | - | chr6_1:6070404-6070423 | Msa0871170:CDS | 40.0% |
| !! | CCTAATCTCCCATTGCTTTT+CGG | + | chr6_1:6070445-6070464 | None:intergenic | 40.0% |
| TCTGTCTCCACTTTGTCAAA+AGG | + | chr6_1:6070498-6070517 | None:intergenic | 40.0% | |
| ! | GAGACAGAAGTTGATCCAAA+CGG | - | chr6_1:6070510-6070529 | Msa0871170:CDS | 40.0% |
| !! | TCGATTAGGGAAGTGTTTCT+TGG | - | chr6_1:6070592-6070611 | Msa0871170:CDS | 40.0% |
| !!! | GCTTTTTCGGAAAATCTGGT+TGG | - | chr6_1:6070649-6070668 | Msa0871170:CDS | 40.0% |
| CAGCATGCAAGTATCAAAGA+AGG | - | chr6_1:6069034-6069053 | Msa0871170:CDS | 40.0% | |
| GGTTTATCTGCTGGGAAATA+AGG | + | chr6_1:6069087-6069106 | None:intergenic | 40.0% | |
| AGAACTAGTATAAGGTGGTG+AGG | + | chr6_1:6069382-6069401 | None:intergenic | 40.0% | |
| TGAAGTCAACATCATCCATG+AGG | + | chr6_1:6069629-6069648 | None:intergenic | 40.0% | |
| !! | TGGATGATGTTGACTTCAGA+AGG | - | chr6_1:6069631-6069650 | Msa0871170:intron | 40.0% |
| ATAGGTTTAGAGATGGCATC+CGG | - | chr6_1:6070001-6070020 | Msa0871170:intron | 40.0% | |
| ! | AGGCAGTGCAAAAGTTTGTT+GGG | - | chr6_1:6070396-6070415 | Msa0871170:CDS | 40.0% |
| !! | CAAAAGTTTGTTGGGAGATG+TGG | - | chr6_1:6070404-6070423 | Msa0871170:CDS | 40.0% |
| !! | CCTAATCTCCCATTGCTTTT+CGG | + | chr6_1:6070445-6070464 | None:intergenic | 40.0% |
| TCTGTCTCCACTTTGTCAAA+AGG | + | chr6_1:6070498-6070517 | None:intergenic | 40.0% | |
| ! | GAGACAGAAGTTGATCCAAA+CGG | - | chr6_1:6070510-6070529 | Msa0871170:CDS | 40.0% |
| !! | TCGATTAGGGAAGTGTTTCT+TGG | - | chr6_1:6070592-6070611 | Msa0871170:CDS | 40.0% |
| !!! | GCTTTTTCGGAAAATCTGGT+TGG | - | chr6_1:6070649-6070668 | Msa0871170:CDS | 40.0% |
| !! | TGAGCGTCGCCAAACATTTT+TGG | + | chr6_1:6069108-6069127 | None:intergenic | 45.0% |
| ! | ACAACTAGGGTTAGCAACAG+TGG | - | chr6_1:6069525-6069544 | Msa0871170:intron | 45.0% |
| CATTTGGATGACGCTAGCAT+AGG | - | chr6_1:6069935-6069954 | Msa0871170:intron | 45.0% | |
| ACGTTAACGGCCATGTTGAT+AGG | - | chr6_1:6069983-6070002 | Msa0871170:intron | 45.0% | |
| ! | TTTCTTTGGAGAGGGGTAAG+AGG | - | chr6_1:6070376-6070395 | Msa0871170:CDS | 45.0% |
| GAGGCAGTGCAAAAGTTTGT+TGG | - | chr6_1:6070395-6070414 | Msa0871170:CDS | 45.0% | |
| CCGAAAAGCAATGGGAGATT+AGG | - | chr6_1:6070442-6070461 | Msa0871170:CDS | 45.0% | |
| !!! | GTTTTGGAAGGTGGTGTTGA+TGG | - | chr6_1:6070540-6070559 | Msa0871170:CDS | 45.0% |
| !! | GTGGTGTTGATGGCGTATAT+GGG | - | chr6_1:6070550-6070569 | Msa0871170:CDS | 45.0% |
| !! | TGGTGTTGATGGCGTATATG+GGG | - | chr6_1:6070551-6070570 | Msa0871170:CDS | 45.0% |
| !! | TGAGCGTCGCCAAACATTTT+TGG | + | chr6_1:6069108-6069127 | None:intergenic | 45.0% |
| ! | ACAACTAGGGTTAGCAACAG+TGG | - | chr6_1:6069525-6069544 | Msa0871170:intron | 45.0% |
| CATTTGGATGACGCTAGCAT+AGG | - | chr6_1:6069935-6069954 | Msa0871170:intron | 45.0% | |
| ACGTTAACGGCCATGTTGAT+AGG | - | chr6_1:6069983-6070002 | Msa0871170:intron | 45.0% | |
| ! | TTTCTTTGGAGAGGGGTAAG+AGG | - | chr6_1:6070376-6070395 | Msa0871170:CDS | 45.0% |
| GAGGCAGTGCAAAAGTTTGT+TGG | - | chr6_1:6070395-6070414 | Msa0871170:CDS | 45.0% | |
| CCGAAAAGCAATGGGAGATT+AGG | - | chr6_1:6070442-6070461 | Msa0871170:CDS | 45.0% | |
| !!! | GTTTTGGAAGGTGGTGTTGA+TGG | - | chr6_1:6070540-6070559 | Msa0871170:CDS | 45.0% |
| !! | GTGGTGTTGATGGCGTATAT+GGG | - | chr6_1:6070550-6070569 | Msa0871170:CDS | 45.0% |
| !! | TGGTGTTGATGGCGTATATG+GGG | - | chr6_1:6070551-6070570 | Msa0871170:CDS | 45.0% |
| ACATGGCCGTTAACGTCCAA+TGG | + | chr6_1:6069979-6069998 | None:intergenic | 50.0% | |
| GGAAGATGTCGATCAAGGTG+TGG | - | chr6_1:6070326-6070345 | Msa0871170:CDS | 50.0% | |
| ! | TCCAAACGGAGTCCTCGTTT+TGG | - | chr6_1:6070524-6070543 | Msa0871170:CDS | 50.0% |
| TCCAAAACGAGGACTCCGTT+TGG | + | chr6_1:6070528-6070547 | None:intergenic | 50.0% | |
| !! | AACGGAGTCCTCGTTTTGGA+AGG | - | chr6_1:6070528-6070547 | Msa0871170:CDS | 50.0% |
| CAACACCACCTTCCAAAACG+AGG | + | chr6_1:6070539-6070558 | None:intergenic | 50.0% | |
| !! | GGTGGTGTTGATGGCGTATA+TGG | - | chr6_1:6070549-6070568 | Msa0871170:CDS | 50.0% |
| ACATGGCCGTTAACGTCCAA+TGG | + | chr6_1:6069979-6069998 | None:intergenic | 50.0% | |
| GGAAGATGTCGATCAAGGTG+TGG | - | chr6_1:6070326-6070345 | Msa0871170:CDS | 50.0% | |
| ! | TCCAAACGGAGTCCTCGTTT+TGG | - | chr6_1:6070524-6070543 | Msa0871170:CDS | 50.0% |
| TCCAAAACGAGGACTCCGTT+TGG | + | chr6_1:6070528-6070547 | None:intergenic | 50.0% | |
| !! | AACGGAGTCCTCGTTTTGGA+AGG | - | chr6_1:6070528-6070547 | Msa0871170:CDS | 50.0% |
| CAACACCACCTTCCAAAACG+AGG | + | chr6_1:6070539-6070558 | None:intergenic | 50.0% | |
| !! | GGTGGTGTTGATGGCGTATA+TGG | - | chr6_1:6070549-6070568 | Msa0871170:CDS | 50.0% |
| GGCGACGCTCATCGTTTGTT+TGG | - | chr6_1:6069117-6069136 | Msa0871170:CDS | 55.0% | |
| !!! | GGAGTCCTCGTTTTGGAAGG+TGG | - | chr6_1:6070531-6070550 | Msa0871170:CDS | 55.0% |
| GGCGACGCTCATCGTTTGTT+TGG | - | chr6_1:6069117-6069136 | Msa0871170:CDS | 55.0% | |
| !!! | GGAGTCCTCGTTTTGGAAGG+TGG | - | chr6_1:6070531-6070550 | Msa0871170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6069012 | 6070681 | 6069012 | ID=Msa0871170;Name=Msa0871170 |
| chr6_1 | mRNA | 6069012 | 6070681 | 6069012 | ID=Msa0871170-mRNA-1;Parent=Msa0871170;Name=Msa0871170-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|0|0|0.5|1|1|2|0|316 |
| chr6_1 | exon | 6070041 | 6070681 | 6070041 | ID=Msa0871170-mRNA-1:exon:1828;Parent=Msa0871170-mRNA-1 |
| chr6_1 | exon | 6069012 | 6069321 | 6069012 | ID=Msa0871170-mRNA-1:exon:1827;Parent=Msa0871170-mRNA-1 |
| chr6_1 | CDS | 6070041 | 6070681 | 6070041 | ID=Msa0871170-mRNA-1:cds;Parent=Msa0871170-mRNA-1 |
| chr6_1 | CDS | 6069012 | 6069321 | 6069012 | ID=Msa0871170-mRNA-1:cds;Parent=Msa0871170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
