Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871180 | KEH24950.1 | 89.837 | 246 | 23 | 1 | 1 | 246 | 1 | 244 | 4.00e-161 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871180 | sp|Q9STS6|LBD27_ARATH | 53.061 | 98 | 43 | 2 | 9 | 106 | 36 | 130 | 3.43e-26 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871180 | A0A072UGP3 | 89.837 | 246 | 23 | 1 | 1 | 246 | 1 | 244 | 1.91e-161 | 457 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0871180 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871180 | MtrunA17_Chr6g0452661 | 89.837 | 246 | 23 | 1 | 1 | 246 | 1 | 244 | 3.68e-165 | 457 |
| Msa0871180 | MtrunA17_Chr5g0439111 | 54.286 | 245 | 92 | 6 | 1 | 236 | 1 | 234 | 1.05e-63 | 199 |
| Msa0871180 | MtrunA17_Chr6g0452691 | 62.590 | 139 | 50 | 1 | 1 | 139 | 1 | 137 | 3.71e-57 | 181 |
| Msa0871180 | MtrunA17_Chr6g0452671 | 56.338 | 142 | 59 | 2 | 7 | 148 | 9 | 147 | 2.16e-49 | 161 |
| Msa0871180 | MtrunA17_Chr4g0055441 | 46.032 | 189 | 58 | 4 | 10 | 197 | 3 | 148 | 1.41e-44 | 147 |
| Msa0871180 | MtrunA17_Chr4g0059901 | 47.706 | 109 | 54 | 2 | 8 | 116 | 9 | 114 | 7.17e-26 | 102 |
| Msa0871180 | MtrunA17_Chr5g0402611 | 46.226 | 106 | 47 | 3 | 7 | 105 | 6 | 108 | 1.12e-24 | 100 |
| Msa0871180 | MtrunA17_Chr3g0115431 | 44.231 | 104 | 55 | 2 | 10 | 113 | 10 | 110 | 2.02e-23 | 94.7 |
| Msa0871180 | MtrunA17_Chr6g0449311 | 47.244 | 127 | 53 | 3 | 37 | 154 | 1 | 122 | 6.70e-23 | 91.3 |
| Msa0871180 | MtrunA17_Chr8g0342351 | 46.226 | 106 | 54 | 2 | 8 | 113 | 11 | 113 | 1.69e-22 | 93.2 |
| Msa0871180 | MtrunA17_Chr2g0311601 | 38.182 | 110 | 65 | 2 | 10 | 119 | 14 | 120 | 3.96e-22 | 89.7 |
| Msa0871180 | MtrunA17_Chr7g0227511 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 1.59e-21 | 88.6 |
| Msa0871180 | MtrunA17_Chr8g0353981 | 43.820 | 89 | 47 | 2 | 3 | 91 | 1 | 86 | 2.43e-21 | 89.4 |
| Msa0871180 | MtrunA17_Chr3g0117121 | 41.414 | 99 | 55 | 2 | 7 | 105 | 8 | 103 | 2.71e-21 | 88.6 |
| Msa0871180 | MtrunA17_Chr4g0058651 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 3.12e-21 | 88.2 |
| Msa0871180 | MtrunA17_Chr6g0449651 | 41.414 | 99 | 55 | 2 | 7 | 105 | 65 | 160 | 3.41e-21 | 88.6 |
| Msa0871180 | MtrunA17_Chr6g0449641 | 40.404 | 99 | 56 | 2 | 7 | 105 | 7 | 102 | 8.12e-21 | 85.9 |
| Msa0871180 | MtrunA17_Chr2g0330201 | 43.243 | 111 | 56 | 2 | 8 | 116 | 18 | 123 | 1.16e-20 | 89.0 |
| Msa0871180 | MtrunA17_Chr3g0106101 | 41.667 | 96 | 53 | 2 | 10 | 105 | 8 | 100 | 1.25e-20 | 86.3 |
| Msa0871180 | MtrunA17_Chr7g0225111 | 36.364 | 110 | 67 | 2 | 10 | 119 | 6 | 112 | 3.35e-20 | 83.6 |
| Msa0871180 | MtrunA17_Chr3g0097221 | 40.187 | 107 | 61 | 2 | 7 | 113 | 5 | 108 | 1.97e-19 | 85.5 |
| Msa0871180 | MtrunA17_Chr4g0043421 | 43.902 | 82 | 43 | 2 | 10 | 91 | 16 | 94 | 2.08e-19 | 82.8 |
| Msa0871180 | MtrunA17_Chr4g0030001 | 40.678 | 118 | 62 | 4 | 10 | 126 | 25 | 135 | 8.24e-19 | 81.6 |
| Msa0871180 | MtrunA17_Chr5g0437571 | 37.374 | 99 | 59 | 2 | 7 | 105 | 4 | 99 | 1.01e-18 | 80.9 |
| Msa0871180 | MtrunA17_Chr1g0200201 | 39.669 | 121 | 66 | 3 | 10 | 130 | 73 | 186 | 1.12e-18 | 82.4 |
| Msa0871180 | MtrunA17_Chr8g0374591 | 40.187 | 107 | 58 | 3 | 3 | 109 | 5 | 105 | 1.78e-18 | 79.3 |
| Msa0871180 | MtrunA17_Chr5g0444351 | 33.654 | 104 | 66 | 2 | 10 | 113 | 6 | 106 | 1.84e-18 | 79.7 |
| Msa0871180 | MtrunA17_Chr5g0437401 | 36.036 | 111 | 68 | 2 | 5 | 115 | 7 | 114 | 8.11e-18 | 79.0 |
| Msa0871180 | MtrunA17_Chr3g0114061 | 37.500 | 96 | 57 | 2 | 10 | 105 | 9 | 101 | 8.18e-18 | 78.2 |
| Msa0871180 | MtrunA17_Chr5g0432451 | 36.522 | 115 | 66 | 4 | 1 | 114 | 38 | 146 | 9.27e-18 | 79.7 |
| Msa0871180 | MtrunA17_Chr5g0438091 | 31.875 | 160 | 90 | 6 | 10 | 168 | 40 | 181 | 2.35e-17 | 78.2 |
| Msa0871180 | MtrunA17_Chr4g0040831 | 31.515 | 165 | 96 | 6 | 2 | 161 | 4 | 156 | 4.91e-17 | 77.4 |
| Msa0871180 | MtrunA17_Chr3g0129071 | 35.780 | 109 | 64 | 3 | 1 | 109 | 42 | 144 | 8.22e-17 | 77.4 |
| Msa0871180 | MtrunA17_Chr8g0374601 | 36.937 | 111 | 64 | 3 | 3 | 113 | 23 | 127 | 4.67e-15 | 73.2 |
| Msa0871180 | MtrunA17_Chr3g0113891 | 37.079 | 89 | 53 | 2 | 5 | 93 | 10 | 95 | 5.18e-15 | 71.2 |
| Msa0871180 | MtrunA17_Chr7g0260971 | 33.962 | 106 | 66 | 3 | 10 | 114 | 15 | 117 | 2.55e-13 | 67.4 |
| Msa0871180 | MtrunA17_Chr1g0184271 | 38.053 | 113 | 63 | 5 | 10 | 121 | 13 | 119 | 5.64e-13 | 66.6 |
| Msa0871180 | MtrunA17_Chr1g0184281 | 34.653 | 101 | 62 | 3 | 10 | 109 | 16 | 113 | 2.05e-12 | 64.7 |
| Msa0871180 | MtrunA17_Chr7g0245871 | 36.634 | 101 | 60 | 3 | 10 | 109 | 28 | 125 | 1.33e-11 | 62.8 |
| Msa0871180 | MtrunA17_Chr5g0435641 | 35.955 | 89 | 51 | 4 | 8 | 95 | 6 | 89 | 5.23e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871180 | AT3G47870.1 | 53.061 | 98 | 43 | 2 | 9 | 106 | 36 | 130 | 3.49e-27 | 107 |
| Msa0871180 | AT3G26660.1 | 38.136 | 118 | 69 | 3 | 8 | 125 | 4 | 117 | 2.27e-23 | 92.4 |
| Msa0871180 | AT3G13850.1 | 42.000 | 150 | 73 | 5 | 8 | 147 | 35 | 180 | 3.49e-23 | 95.9 |
| Msa0871180 | AT3G26620.1 | 38.679 | 106 | 62 | 2 | 8 | 113 | 4 | 106 | 3.62e-23 | 91.7 |
| Msa0871180 | AT5G66870.1 | 35.948 | 153 | 92 | 4 | 10 | 159 | 8 | 157 | 1.84e-22 | 94.7 |
| Msa0871180 | AT1G65620.1 | 48.235 | 85 | 41 | 2 | 7 | 91 | 7 | 88 | 8.55e-22 | 90.5 |
| Msa0871180 | AT1G65620.4 | 48.235 | 85 | 41 | 2 | 7 | 91 | 7 | 88 | 8.55e-22 | 90.5 |
| Msa0871180 | AT1G65620.3 | 48.235 | 85 | 41 | 2 | 7 | 91 | 7 | 88 | 8.55e-22 | 90.5 |
| Msa0871180 | AT1G65620.5 | 48.235 | 85 | 41 | 2 | 7 | 91 | 7 | 88 | 8.55e-22 | 90.5 |
| Msa0871180 | AT1G65620.2 | 48.235 | 85 | 41 | 2 | 7 | 91 | 7 | 88 | 8.55e-22 | 90.5 |
| Msa0871180 | AT3G27650.1 | 40.594 | 101 | 57 | 2 | 7 | 107 | 37 | 134 | 1.82e-21 | 88.6 |
| Msa0871180 | AT5G63090.4 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 1.75e-20 | 86.7 |
| Msa0871180 | AT5G63090.3 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 1.75e-20 | 86.7 |
| Msa0871180 | AT5G63090.2 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 1.75e-20 | 86.7 |
| Msa0871180 | AT5G63090.1 | 40.404 | 99 | 56 | 2 | 7 | 105 | 9 | 104 | 1.75e-20 | 86.7 |
| Msa0871180 | AT1G31320.1 | 45.122 | 82 | 42 | 2 | 10 | 91 | 14 | 92 | 5.27e-19 | 82.4 |
| Msa0871180 | AT3G50510.1 | 38.393 | 112 | 65 | 3 | 5 | 115 | 8 | 116 | 9.09e-19 | 82.4 |
| Msa0871180 | AT3G50510.2 | 38.393 | 112 | 65 | 3 | 5 | 115 | 8 | 116 | 9.09e-19 | 82.4 |
| Msa0871180 | AT2G23660.2 | 48.780 | 82 | 39 | 2 | 10 | 91 | 6 | 84 | 1.14e-18 | 84.0 |
| Msa0871180 | AT2G23660.3 | 48.780 | 82 | 39 | 2 | 10 | 91 | 6 | 84 | 1.14e-18 | 84.0 |
| Msa0871180 | AT2G23660.1 | 48.780 | 82 | 39 | 2 | 10 | 91 | 6 | 84 | 1.14e-18 | 84.0 |
| Msa0871180 | AT1G07900.1 | 40.000 | 100 | 57 | 2 | 10 | 109 | 34 | 130 | 2.03e-18 | 81.3 |
| Msa0871180 | AT1G72980.1 | 40.496 | 121 | 66 | 3 | 9 | 126 | 13 | 130 | 5.20e-18 | 80.5 |
| Msa0871180 | AT2G28500.1 | 40.000 | 100 | 57 | 2 | 10 | 109 | 56 | 152 | 1.06e-17 | 80.1 |
| Msa0871180 | AT2G30130.1 | 42.683 | 82 | 44 | 2 | 10 | 91 | 9 | 87 | 3.28e-17 | 77.8 |
| Msa0871180 | AT2G40470.2 | 34.746 | 118 | 71 | 3 | 1 | 118 | 15 | 126 | 3.84e-17 | 77.8 |
| Msa0871180 | AT2G30340.2 | 36.697 | 109 | 63 | 3 | 1 | 109 | 48 | 150 | 8.47e-17 | 78.2 |
| Msa0871180 | AT2G30340.1 | 36.697 | 109 | 63 | 3 | 1 | 109 | 47 | 149 | 8.96e-17 | 78.2 |
| Msa0871180 | AT2G40470.1 | 34.746 | 118 | 71 | 3 | 1 | 118 | 40 | 151 | 1.01e-16 | 77.4 |
| Msa0871180 | AT1G16530.1 | 36.134 | 119 | 64 | 5 | 10 | 127 | 15 | 122 | 3.38e-16 | 74.3 |
| Msa0871180 | AT3G11090.1 | 31.915 | 141 | 91 | 4 | 5 | 144 | 7 | 143 | 1.43e-15 | 72.8 |
| Msa0871180 | AT1G06280.1 | 42.169 | 83 | 45 | 2 | 7 | 89 | 22 | 101 | 5.50e-15 | 72.0 |
| Msa0871180 | AT5G15060.1 | 44.000 | 75 | 39 | 2 | 10 | 83 | 18 | 90 | 7.63e-14 | 67.4 |
| Msa0871180 | AT2G42430.1 | 32.381 | 105 | 67 | 3 | 10 | 113 | 16 | 117 | 1.47e-11 | 63.2 |
| Msa0871180 | AT3G03760.1 | 36.145 | 83 | 49 | 3 | 10 | 91 | 52 | 131 | 6.12e-11 | 61.6 |
Find 47 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGCAAATTTCCCAATTCA+TGG | 0.256731 | 6_1:-6075667 | Msa0871180:CDS |
| TACTGATGAATTACCTAGTT+TGG | 0.263223 | 6_1:-6075200 | Msa0871180:CDS |
| GGTTTATCGGCTGGAAAATA+AGG | 0.282995 | 6_1:+6075820 | None:intergenic |
| GCCGAACATCTTTGGTTTAT+CGG | 0.291655 | 6_1:+6075807 | None:intergenic |
| CATGCTGCACAAGCCTTGTT+TGG | 0.313109 | 6_1:+6075886 | None:intergenic |
| AAGAGTTAAAACAATTAAAA+TGG | 0.318507 | 6_1:-6075594 | Msa0871180:CDS |
| GAAGATACTAAACGAAATTA+AGG | 0.321068 | 6_1:-6075743 | Msa0871180:CDS |
| TGAGCATCGCCGAACATCTT+TGG | 0.322571 | 6_1:+6075799 | None:intergenic |
| AAACTTGAATATAAATTCTA+TGG | 0.323327 | 6_1:-6075368 | Msa0871180:CDS |
| ACACCAAGACATCCATGAAT+TGG | 0.323416 | 6_1:+6075655 | None:intergenic |
| ATTGGACAAGAATGAAGATT+TGG | 0.351373 | 6_1:-6075284 | Msa0871180:CDS |
| ATATTCAAGTTTGTATCAAT+TGG | 0.365326 | 6_1:+6075379 | None:intergenic |
| GGACAATGTCAAATTAGAAT+TGG | 0.404194 | 6_1:-6075302 | Msa0871180:CDS |
| TTCCCAATTCATGGATGTCT+TGG | 0.407544 | 6_1:-6075658 | Msa0871180:CDS |
| TTTGGTTTGATAATATTCAT+TGG | 0.408519 | 6_1:+6075904 | None:intergenic |
| AAATTAGAACAACATTTGAT+TGG | 0.409230 | 6_1:-6075246 | Msa0871180:CDS |
| TTTAACAATTATAGTGATGT+TGG | 0.420923 | 6_1:-6075490 | Msa0871180:CDS |
| AACATCTTTGGTTTATCGGC+TGG | 0.432668 | 6_1:+6075811 | None:intergenic |
| TCTAATATTGATGAACTTGT+GGG | 0.443652 | 6_1:-6075175 | Msa0871180:CDS |
| CACCAAGACATCCATGAATT+GGG | 0.452237 | 6_1:+6075656 | None:intergenic |
| AATTAGAACAACATTTGATT+GGG | 0.452331 | 6_1:-6075245 | Msa0871180:CDS |
| AACACTTGAAAACTACTAGA+AGG | 0.466023 | 6_1:+6075511 | None:intergenic |
| GGTGTTATTCATCTGTATGC+AGG | 0.466954 | 6_1:-6075637 | Msa0871180:CDS |
| GCCGATAAACCAAAGATGTT+CGG | 0.484421 | 6_1:-6075808 | Msa0871180:CDS |
| ATATAAATTCTATGGATACA+AGG | 0.500818 | 6_1:-6075360 | Msa0871180:CDS |
| TTGAAAACTACTAGAAGGTA+TGG | 0.504565 | 6_1:+6075516 | None:intergenic |
| TTCTAATATTGATGAACTTG+TGG | 0.511241 | 6_1:-6075176 | Msa0871180:CDS |
| GGAGAATTATTAACATCATG+AGG | 0.523658 | 6_1:+6075400 | None:intergenic |
| AATTTGACATTGTCCCCACC+AGG | 0.540239 | 6_1:+6075310 | None:intergenic |
| TAGAACAACATTTGATTGGG+AGG | 0.541236 | 6_1:-6075242 | Msa0871180:CDS |
| TCACTAACATAAGAAGAAGA+TGG | 0.561786 | 6_1:+6075430 | None:intergenic |
| TTGAGTGGTGATAACAATCC+TGG | 0.564202 | 6_1:-6075328 | Msa0871180:CDS |
| GAGAATTATTAACATCATGA+GGG | 0.568165 | 6_1:+6075401 | None:intergenic |
| TATTGATGAACTTGTGGGAA+AGG | 0.569531 | 6_1:-6075170 | Msa0871180:CDS |
| TATAAATTCTATGGATACAA+GGG | 0.572771 | 6_1:-6075359 | Msa0871180:CDS |
| TTTGATTGGGAGGAAACAGA+AGG | 0.575589 | 6_1:-6075232 | Msa0871180:CDS |
| ATTATTAACATCATGAGGGG+TGG | 0.592676 | 6_1:+6075405 | None:intergenic |
| GAATATTATCAAACCAAACA+AGG | 0.593100 | 6_1:-6075899 | Msa0871180:CDS |
| TCAATATTAGAATCCAAACT+AGG | 0.608624 | 6_1:+6075187 | None:intergenic |
| ATACTAAACGAAATTAAGGA+TGG | 0.622219 | 6_1:-6075739 | Msa0871180:CDS |
| AGAATTATTAACATCATGAG+GGG | 0.645064 | 6_1:+6075402 | None:intergenic |
| AAAACTACTAGAAGGTATGG+AGG | 0.653437 | 6_1:+6075519 | None:intergenic |
| ACAAGGGTTGCAAAATTGAG+TGG | 0.655912 | 6_1:-6075343 | Msa0871180:CDS |
| GATGCATCTGAATTCAACAC+AGG | 0.671652 | 6_1:-6075148 | Msa0871180:CDS |
| GTGGTGATAACAATCCTGGT+GGG | 0.677314 | 6_1:-6075324 | Msa0871180:CDS |
| AGTGGTGATAACAATCCTGG+TGG | 0.728841 | 6_1:-6075325 | Msa0871180:CDS |
| TGGTGATAACAATCCTGGTG+GGG | 0.737923 | 6_1:-6075323 | Msa0871180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGTTAAAACAATTAAAA+TGG | - | chr6_1:6075436-6075455 | Msa0871180:CDS | 15.0% |
| !! | AAACTTGAATATAAATTCTA+TGG | - | chr6_1:6075662-6075681 | Msa0871180:CDS | 15.0% |
| !! | AAGAGTTAAAACAATTAAAA+TGG | - | chr6_1:6075436-6075455 | Msa0871180:CDS | 15.0% |
| !! | AAACTTGAATATAAATTCTA+TGG | - | chr6_1:6075662-6075681 | Msa0871180:CDS | 15.0% |
| !! | TTTAACAATTATAGTGATGT+TGG | - | chr6_1:6075540-6075559 | Msa0871180:CDS | 20.0% |
| !!! | ATATTCAAGTTTGTATCAAT+TGG | + | chr6_1:6075654-6075673 | None:intergenic | 20.0% |
| !! | ATATAAATTCTATGGATACA+AGG | - | chr6_1:6075670-6075689 | Msa0871180:CDS | 20.0% |
| !! | TATAAATTCTATGGATACAA+GGG | - | chr6_1:6075671-6075690 | Msa0871180:CDS | 20.0% |
| !! | AAATTAGAACAACATTTGAT+TGG | - | chr6_1:6075784-6075803 | Msa0871180:CDS | 20.0% |
| !! | AATTAGAACAACATTTGATT+GGG | - | chr6_1:6075785-6075804 | Msa0871180:CDS | 20.0% |
| !! | TTTAACAATTATAGTGATGT+TGG | - | chr6_1:6075540-6075559 | Msa0871180:CDS | 20.0% |
| !!! | ATATTCAAGTTTGTATCAAT+TGG | + | chr6_1:6075654-6075673 | None:intergenic | 20.0% |
| !! | ATATAAATTCTATGGATACA+AGG | - | chr6_1:6075670-6075689 | Msa0871180:CDS | 20.0% |
| !! | TATAAATTCTATGGATACAA+GGG | - | chr6_1:6075671-6075690 | Msa0871180:CDS | 20.0% |
| !! | AAATTAGAACAACATTTGAT+TGG | - | chr6_1:6075784-6075803 | Msa0871180:CDS | 20.0% |
| !! | AATTAGAACAACATTTGATT+GGG | - | chr6_1:6075785-6075804 | Msa0871180:CDS | 20.0% |
| ! | GAATATTATCAAACCAAACA+AGG | - | chr6_1:6075131-6075150 | Msa0871180:CDS | 25.0% |
| ! | GAAGATACTAAACGAAATTA+AGG | - | chr6_1:6075287-6075306 | Msa0871180:CDS | 25.0% |
| ! | ATACTAAACGAAATTAAGGA+TGG | - | chr6_1:6075291-6075310 | Msa0871180:CDS | 25.0% |
| ! | AGAATTATTAACATCATGAG+GGG | + | chr6_1:6075631-6075650 | None:intergenic | 25.0% |
| ! | GAGAATTATTAACATCATGA+GGG | + | chr6_1:6075632-6075651 | None:intergenic | 25.0% |
| ! | TCAATATTAGAATCCAAACT+AGG | + | chr6_1:6075846-6075865 | None:intergenic | 25.0% |
| ! | TTCTAATATTGATGAACTTG+TGG | - | chr6_1:6075854-6075873 | Msa0871180:CDS | 25.0% |
| ! | TCTAATATTGATGAACTTGT+GGG | - | chr6_1:6075855-6075874 | Msa0871180:CDS | 25.0% |
| ! | GAATATTATCAAACCAAACA+AGG | - | chr6_1:6075131-6075150 | Msa0871180:CDS | 25.0% |
| ! | GAAGATACTAAACGAAATTA+AGG | - | chr6_1:6075287-6075306 | Msa0871180:CDS | 25.0% |
| ! | ATACTAAACGAAATTAAGGA+TGG | - | chr6_1:6075291-6075310 | Msa0871180:CDS | 25.0% |
| ! | AGAATTATTAACATCATGAG+GGG | + | chr6_1:6075631-6075650 | None:intergenic | 25.0% |
| ! | GAGAATTATTAACATCATGA+GGG | + | chr6_1:6075632-6075651 | None:intergenic | 25.0% |
| ! | TCAATATTAGAATCCAAACT+AGG | + | chr6_1:6075846-6075865 | None:intergenic | 25.0% |
| ! | TTCTAATATTGATGAACTTG+TGG | - | chr6_1:6075854-6075873 | Msa0871180:CDS | 25.0% |
| ! | TCTAATATTGATGAACTTGT+GGG | - | chr6_1:6075855-6075874 | Msa0871180:CDS | 25.0% |
| !!! | GAAGATTTTGCTGTTGTAAA+TGG | + | chr6_1:6075488-6075507 | None:intergenic | 30.0% |
| TTGAAAACTACTAGAAGGTA+TGG | + | chr6_1:6075517-6075536 | None:intergenic | 30.0% | |
| AACACTTGAAAACTACTAGA+AGG | + | chr6_1:6075522-6075541 | None:intergenic | 30.0% | |
| TCACTAACATAAGAAGAAGA+TGG | + | chr6_1:6075603-6075622 | None:intergenic | 30.0% | |
| GGAGAATTATTAACATCATG+AGG | + | chr6_1:6075633-6075652 | None:intergenic | 30.0% | |
| GGACAATGTCAAATTAGAAT+TGG | - | chr6_1:6075728-6075747 | Msa0871180:CDS | 30.0% | |
| ATTGGACAAGAATGAAGATT+TGG | - | chr6_1:6075746-6075765 | Msa0871180:CDS | 30.0% | |
| TACTGATGAATTACCTAGTT+TGG | - | chr6_1:6075830-6075849 | Msa0871180:CDS | 30.0% | |
| !!! | GAAGATTTTGCTGTTGTAAA+TGG | + | chr6_1:6075488-6075507 | None:intergenic | 30.0% |
| TTGAAAACTACTAGAAGGTA+TGG | + | chr6_1:6075517-6075536 | None:intergenic | 30.0% | |
| AACACTTGAAAACTACTAGA+AGG | + | chr6_1:6075522-6075541 | None:intergenic | 30.0% | |
| TCACTAACATAAGAAGAAGA+TGG | + | chr6_1:6075603-6075622 | None:intergenic | 30.0% | |
| GGAGAATTATTAACATCATG+AGG | + | chr6_1:6075633-6075652 | None:intergenic | 30.0% | |
| GGACAATGTCAAATTAGAAT+TGG | - | chr6_1:6075728-6075747 | Msa0871180:CDS | 30.0% | |
| ATTGGACAAGAATGAAGATT+TGG | - | chr6_1:6075746-6075765 | Msa0871180:CDS | 30.0% | |
| TACTGATGAATTACCTAGTT+TGG | - | chr6_1:6075830-6075849 | Msa0871180:CDS | 30.0% | |
| ! | AAAACTACTAGAAGGTATGG+AGG | + | chr6_1:6075514-6075533 | None:intergenic | 35.0% |
| ATTATTAACATCATGAGGGG+TGG | + | chr6_1:6075628-6075647 | None:intergenic | 35.0% | |
| TAGAACAACATTTGATTGGG+AGG | - | chr6_1:6075788-6075807 | Msa0871180:CDS | 35.0% | |
| TATTGATGAACTTGTGGGAA+AGG | - | chr6_1:6075860-6075879 | Msa0871180:CDS | 35.0% | |
| ! | AAAACTACTAGAAGGTATGG+AGG | + | chr6_1:6075514-6075533 | None:intergenic | 35.0% |
| ATTATTAACATCATGAGGGG+TGG | + | chr6_1:6075628-6075647 | None:intergenic | 35.0% | |
| TAGAACAACATTTGATTGGG+AGG | - | chr6_1:6075788-6075807 | Msa0871180:CDS | 35.0% | |
| TATTGATGAACTTGTGGGAA+AGG | - | chr6_1:6075860-6075879 | Msa0871180:CDS | 35.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | + | chr6_1:6075213-6075232 | None:intergenic | 40.0% |
| ! | AACATCTTTGGTTTATCGGC+TGG | + | chr6_1:6075222-6075241 | None:intergenic | 40.0% |
| GCCGATAAACCAAAGATGTT+CGG | - | chr6_1:6075222-6075241 | Msa0871180:CDS | 40.0% | |
| ! | GCCGAACATCTTTGGTTTAT+CGG | + | chr6_1:6075226-6075245 | None:intergenic | 40.0% |
| CGTGCAAATTTCCCAATTCA+TGG | - | chr6_1:6075363-6075382 | Msa0871180:CDS | 40.0% | |
| TTCCCAATTCATGGATGTCT+TGG | - | chr6_1:6075372-6075391 | Msa0871180:CDS | 40.0% | |
| CACCAAGACATCCATGAATT+GGG | + | chr6_1:6075377-6075396 | None:intergenic | 40.0% | |
| ACACCAAGACATCCATGAAT+TGG | + | chr6_1:6075378-6075397 | None:intergenic | 40.0% | |
| !! | GGTGTTATTCATCTGTATGC+AGG | - | chr6_1:6075393-6075412 | Msa0871180:CDS | 40.0% |
| ACAAGGGTTGCAAAATTGAG+TGG | - | chr6_1:6075687-6075706 | Msa0871180:CDS | 40.0% | |
| TTGAGTGGTGATAACAATCC+TGG | - | chr6_1:6075702-6075721 | Msa0871180:CDS | 40.0% | |
| TTTGATTGGGAGGAAACAGA+AGG | - | chr6_1:6075798-6075817 | Msa0871180:CDS | 40.0% | |
| GATGCATCTGAATTCAACAC+AGG | - | chr6_1:6075882-6075901 | Msa0871180:CDS | 40.0% | |
| ! | GGTTTATCGGCTGGAAAATA+AGG | + | chr6_1:6075213-6075232 | None:intergenic | 40.0% |
| ! | AACATCTTTGGTTTATCGGC+TGG | + | chr6_1:6075222-6075241 | None:intergenic | 40.0% |
| GCCGATAAACCAAAGATGTT+CGG | - | chr6_1:6075222-6075241 | Msa0871180:CDS | 40.0% | |
| ! | GCCGAACATCTTTGGTTTAT+CGG | + | chr6_1:6075226-6075245 | None:intergenic | 40.0% |
| CGTGCAAATTTCCCAATTCA+TGG | - | chr6_1:6075363-6075382 | Msa0871180:CDS | 40.0% | |
| TTCCCAATTCATGGATGTCT+TGG | - | chr6_1:6075372-6075391 | Msa0871180:CDS | 40.0% | |
| CACCAAGACATCCATGAATT+GGG | + | chr6_1:6075377-6075396 | None:intergenic | 40.0% | |
| ACACCAAGACATCCATGAAT+TGG | + | chr6_1:6075378-6075397 | None:intergenic | 40.0% | |
| !! | GGTGTTATTCATCTGTATGC+AGG | - | chr6_1:6075393-6075412 | Msa0871180:CDS | 40.0% |
| ACAAGGGTTGCAAAATTGAG+TGG | - | chr6_1:6075687-6075706 | Msa0871180:CDS | 40.0% | |
| TTGAGTGGTGATAACAATCC+TGG | - | chr6_1:6075702-6075721 | Msa0871180:CDS | 40.0% | |
| TTTGATTGGGAGGAAACAGA+AGG | - | chr6_1:6075798-6075817 | Msa0871180:CDS | 40.0% | |
| GATGCATCTGAATTCAACAC+AGG | - | chr6_1:6075882-6075901 | Msa0871180:CDS | 40.0% | |
| ! | GGCGATGCTCATCTTTTGTT+TGG | - | chr6_1:6075243-6075262 | Msa0871180:CDS | 45.0% |
| AGTGGTGATAACAATCCTGG+TGG | - | chr6_1:6075705-6075724 | Msa0871180:CDS | 45.0% | |
| GTGGTGATAACAATCCTGGT+GGG | - | chr6_1:6075706-6075725 | Msa0871180:CDS | 45.0% | |
| TGGTGATAACAATCCTGGTG+GGG | - | chr6_1:6075707-6075726 | Msa0871180:CDS | 45.0% | |
| AATTTGACATTGTCCCCACC+AGG | + | chr6_1:6075723-6075742 | None:intergenic | 45.0% | |
| ! | GGCGATGCTCATCTTTTGTT+TGG | - | chr6_1:6075243-6075262 | Msa0871180:CDS | 45.0% |
| AGTGGTGATAACAATCCTGG+TGG | - | chr6_1:6075705-6075724 | Msa0871180:CDS | 45.0% | |
| GTGGTGATAACAATCCTGGT+GGG | - | chr6_1:6075706-6075725 | Msa0871180:CDS | 45.0% | |
| TGGTGATAACAATCCTGGTG+GGG | - | chr6_1:6075707-6075726 | Msa0871180:CDS | 45.0% | |
| AATTTGACATTGTCCCCACC+AGG | + | chr6_1:6075723-6075742 | None:intergenic | 45.0% | |
| !! | CATGCTGCACAAGCCTTGTT+TGG | + | chr6_1:6075147-6075166 | None:intergenic | 50.0% |
| ! | TGAGCATCGCCGAACATCTT+TGG | + | chr6_1:6075234-6075253 | None:intergenic | 50.0% |
| !! | CATGCTGCACAAGCCTTGTT+TGG | + | chr6_1:6075147-6075166 | None:intergenic | 50.0% |
| ! | TGAGCATCGCCGAACATCTT+TGG | + | chr6_1:6075234-6075253 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6075129 | 6075923 | 6075129 | ID=Msa0871180;Name=Msa0871180 |
| chr6_1 | mRNA | 6075129 | 6075923 | 6075129 | ID=Msa0871180-mRNA-1;Parent=Msa0871180;Name=Msa0871180-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|264 |
| chr6_1 | exon | 6075129 | 6075923 | 6075129 | ID=Msa0871180-mRNA-1:exon:1818;Parent=Msa0871180-mRNA-1 |
| chr6_1 | CDS | 6075129 | 6075923 | 6075129 | ID=Msa0871180-mRNA-1:cds;Parent=Msa0871180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
