Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871190 | XP_013450912.1 | 83.636 | 220 | 17 | 3 | 1 | 219 | 1 | 202 | 2.37e-126 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871190 | sp|Q9STS6|LBD27_ARATH | 55.340 | 103 | 46 | 0 | 5 | 107 | 30 | 132 | 3.24e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871190 | A0A072U5L7 | 83.636 | 220 | 17 | 3 | 1 | 219 | 1 | 202 | 1.13e-126 | 366 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0871190 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871190 | MtrunA17_Chr6g0452671 | 83.636 | 220 | 17 | 3 | 1 | 219 | 1 | 202 | 2.18e-130 | 366 |
| Msa0871190 | MtrunA17_Chr6g0452661 | 47.541 | 244 | 88 | 7 | 9 | 226 | 7 | 236 | 9.72e-63 | 196 |
| Msa0871190 | MtrunA17_Chr5g0439111 | 45.992 | 237 | 98 | 7 | 9 | 224 | 7 | 234 | 1.75e-52 | 169 |
| Msa0871190 | MtrunA17_Chr6g0452691 | 51.786 | 168 | 68 | 4 | 1 | 164 | 1 | 159 | 2.69e-49 | 159 |
| Msa0871190 | MtrunA17_Chr4g0055441 | 50.568 | 176 | 59 | 5 | 12 | 186 | 3 | 151 | 3.12e-49 | 158 |
| Msa0871190 | MtrunA17_Chr4g0059901 | 50.450 | 111 | 55 | 0 | 5 | 115 | 4 | 114 | 8.48e-35 | 125 |
| Msa0871190 | MtrunA17_Chr8g0342351 | 55.000 | 100 | 45 | 0 | 8 | 107 | 9 | 108 | 1.03e-33 | 122 |
| Msa0871190 | MtrunA17_Chr2g0330201 | 47.706 | 109 | 57 | 0 | 8 | 116 | 16 | 124 | 1.16e-30 | 115 |
| Msa0871190 | MtrunA17_Chr3g0115431 | 44.000 | 100 | 56 | 0 | 9 | 108 | 7 | 106 | 9.10e-27 | 102 |
| Msa0871190 | MtrunA17_Chr2g0311601 | 46.988 | 83 | 44 | 0 | 8 | 90 | 10 | 92 | 1.41e-26 | 100 |
| Msa0871190 | MtrunA17_Chr6g0449651 | 41.176 | 102 | 60 | 0 | 6 | 107 | 62 | 163 | 2.14e-26 | 101 |
| Msa0871190 | MtrunA17_Chr5g0402611 | 43.299 | 97 | 55 | 0 | 12 | 108 | 9 | 105 | 2.44e-26 | 103 |
| Msa0871190 | MtrunA17_Chr7g0227511 | 41.000 | 100 | 59 | 0 | 8 | 107 | 8 | 107 | 2.45e-26 | 100 |
| Msa0871190 | MtrunA17_Chr4g0043421 | 35.915 | 142 | 79 | 3 | 12 | 150 | 16 | 148 | 5.37e-26 | 99.8 |
| Msa0871190 | MtrunA17_Chr8g0353981 | 50.633 | 79 | 39 | 0 | 12 | 90 | 8 | 86 | 1.49e-25 | 99.8 |
| Msa0871190 | MtrunA17_Chr3g0106101 | 41.414 | 99 | 58 | 0 | 6 | 104 | 2 | 100 | 1.96e-25 | 98.2 |
| Msa0871190 | MtrunA17_Chr7g0225111 | 40.566 | 106 | 63 | 0 | 12 | 117 | 6 | 111 | 3.07e-25 | 95.9 |
| Msa0871190 | MtrunA17_Chr6g0449641 | 40.000 | 100 | 60 | 0 | 8 | 107 | 6 | 105 | 3.13e-25 | 96.7 |
| Msa0871190 | MtrunA17_Chr5g0444351 | 40.206 | 97 | 58 | 0 | 12 | 108 | 6 | 102 | 3.30e-25 | 96.7 |
| Msa0871190 | MtrunA17_Chr3g0114061 | 44.706 | 85 | 47 | 0 | 6 | 90 | 3 | 87 | 5.31e-25 | 96.7 |
| Msa0871190 | MtrunA17_Chr3g0117121 | 41.667 | 96 | 56 | 0 | 12 | 107 | 11 | 106 | 6.56e-25 | 97.4 |
| Msa0871190 | MtrunA17_Chr4g0058651 | 32.237 | 152 | 83 | 2 | 12 | 163 | 12 | 143 | 7.60e-25 | 97.1 |
| Msa0871190 | MtrunA17_Chr3g0097221 | 41.584 | 101 | 59 | 0 | 8 | 108 | 4 | 104 | 1.48e-24 | 98.6 |
| Msa0871190 | MtrunA17_Chr6g0449311 | 51.261 | 119 | 47 | 3 | 39 | 149 | 1 | 116 | 1.70e-24 | 94.7 |
| Msa0871190 | MtrunA17_Chr5g0437571 | 46.835 | 79 | 42 | 0 | 12 | 90 | 7 | 85 | 6.52e-24 | 94.0 |
| Msa0871190 | MtrunA17_Chr4g0030001 | 35.032 | 157 | 89 | 4 | 12 | 160 | 25 | 176 | 2.00e-23 | 93.2 |
| Msa0871190 | MtrunA17_Chr5g0438091 | 37.255 | 102 | 64 | 0 | 7 | 108 | 35 | 136 | 2.09e-23 | 93.6 |
| Msa0871190 | MtrunA17_Chr5g0432451 | 37.963 | 108 | 66 | 1 | 7 | 113 | 39 | 146 | 1.74e-22 | 92.0 |
| Msa0871190 | MtrunA17_Chr5g0437401 | 38.318 | 107 | 66 | 0 | 8 | 114 | 8 | 114 | 2.56e-22 | 90.1 |
| Msa0871190 | MtrunA17_Chr1g0200201 | 34.965 | 143 | 85 | 2 | 12 | 150 | 73 | 211 | 2.56e-22 | 91.3 |
| Msa0871190 | MtrunA17_Chr3g0129071 | 37.255 | 102 | 64 | 0 | 7 | 108 | 43 | 144 | 5.78e-22 | 90.5 |
| Msa0871190 | MtrunA17_Chr3g0113891 | 43.529 | 85 | 48 | 0 | 8 | 92 | 11 | 95 | 9.61e-22 | 89.0 |
| Msa0871190 | MtrunA17_Chr8g0374591 | 36.364 | 99 | 63 | 0 | 10 | 108 | 7 | 105 | 4.89e-21 | 85.5 |
| Msa0871190 | MtrunA17_Chr4g0040831 | 42.683 | 82 | 47 | 0 | 4 | 85 | 8 | 89 | 6.34e-21 | 87.0 |
| Msa0871190 | MtrunA17_Chr7g0260971 | 36.283 | 113 | 71 | 1 | 2 | 113 | 5 | 117 | 3.94e-19 | 82.8 |
| Msa0871190 | MtrunA17_Chr8g0374601 | 37.374 | 99 | 62 | 0 | 10 | 108 | 25 | 123 | 1.68e-18 | 82.0 |
| Msa0871190 | MtrunA17_Chr6g0460951 | 34.259 | 108 | 70 | 1 | 12 | 118 | 41 | 148 | 3.72e-18 | 80.1 |
| Msa0871190 | MtrunA17_Chr8g0351721 | 38.614 | 101 | 61 | 1 | 12 | 111 | 19 | 119 | 1.81e-17 | 78.2 |
| Msa0871190 | MtrunA17_Chr4g0046201 | 40.000 | 80 | 48 | 0 | 11 | 90 | 6 | 85 | 2.20e-16 | 76.3 |
| Msa0871190 | MtrunA17_Chr8g0374581 | 36.000 | 100 | 63 | 1 | 10 | 108 | 7 | 106 | 5.73e-16 | 74.3 |
| Msa0871190 | MtrunA17_Chr5g0435641 | 32.990 | 97 | 64 | 1 | 10 | 105 | 6 | 102 | 6.80e-16 | 73.2 |
| Msa0871190 | MtrunA17_Chr1g0184271 | 28.652 | 178 | 111 | 4 | 12 | 185 | 13 | 178 | 7.63e-16 | 73.9 |
| Msa0871190 | MtrunA17_Chr1g0184281 | 30.899 | 178 | 96 | 7 | 12 | 177 | 16 | 178 | 1.03e-15 | 73.2 |
| Msa0871190 | MtrunA17_Chr6g0460941 | 32.979 | 94 | 62 | 1 | 6 | 98 | 2 | 95 | 1.06e-15 | 70.1 |
| Msa0871190 | MtrunA17_Chr8g0351701 | 34.694 | 98 | 63 | 1 | 12 | 108 | 24 | 121 | 3.55e-15 | 72.0 |
| Msa0871190 | MtrunA17_Chr7g0261031 | 40.741 | 81 | 47 | 1 | 12 | 91 | 9 | 89 | 5.27e-15 | 71.6 |
| Msa0871190 | MtrunA17_Chr7g0245871 | 34.951 | 103 | 59 | 2 | 12 | 113 | 28 | 123 | 1.19e-14 | 70.9 |
| Msa0871190 | MtrunA17_Chr2g0326041 | 56.250 | 48 | 21 | 0 | 12 | 59 | 34 | 81 | 1.44e-14 | 67.0 |
| Msa0871190 | MtrunA17_Chr7g0245861 | 37.363 | 91 | 53 | 3 | 1 | 87 | 1 | 91 | 8.45e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871190 | AT3G47870.1 | 55.340 | 103 | 46 | 0 | 5 | 107 | 30 | 132 | 3.29e-34 | 125 |
| Msa0871190 | AT3G13850.1 | 43.137 | 153 | 82 | 3 | 10 | 159 | 35 | 185 | 1.02e-30 | 114 |
| Msa0871190 | AT1G72980.1 | 45.238 | 126 | 65 | 2 | 6 | 128 | 8 | 132 | 2.16e-29 | 110 |
| Msa0871190 | AT3G26660.1 | 43.158 | 95 | 54 | 0 | 10 | 104 | 4 | 98 | 1.74e-26 | 99.8 |
| Msa0871190 | AT3G27650.1 | 44.330 | 97 | 54 | 0 | 8 | 104 | 36 | 132 | 1.81e-26 | 100 |
| Msa0871190 | AT1G65620.1 | 49.398 | 83 | 42 | 0 | 8 | 90 | 6 | 88 | 1.82e-26 | 102 |
| Msa0871190 | AT1G65620.4 | 49.398 | 83 | 42 | 0 | 8 | 90 | 6 | 88 | 1.82e-26 | 102 |
| Msa0871190 | AT1G65620.3 | 49.398 | 83 | 42 | 0 | 8 | 90 | 6 | 88 | 1.82e-26 | 102 |
| Msa0871190 | AT1G65620.5 | 49.398 | 83 | 42 | 0 | 8 | 90 | 6 | 88 | 1.82e-26 | 102 |
| Msa0871190 | AT1G65620.2 | 49.398 | 83 | 42 | 0 | 8 | 90 | 6 | 88 | 1.82e-26 | 102 |
| Msa0871190 | AT3G26620.1 | 43.158 | 95 | 54 | 0 | 10 | 104 | 4 | 98 | 2.23e-26 | 99.4 |
| Msa0871190 | AT5G66870.1 | 38.835 | 103 | 63 | 0 | 6 | 108 | 2 | 104 | 3.60e-25 | 101 |
| Msa0871190 | AT2G30130.1 | 36.719 | 128 | 74 | 1 | 6 | 133 | 3 | 123 | 4.97e-25 | 97.8 |
| Msa0871190 | AT1G31320.1 | 44.578 | 83 | 46 | 0 | 8 | 90 | 10 | 92 | 1.33e-24 | 96.3 |
| Msa0871190 | AT1G16530.1 | 46.512 | 86 | 45 | 1 | 6 | 90 | 9 | 94 | 2.44e-23 | 92.8 |
| Msa0871190 | AT5G63090.4 | 38.542 | 96 | 59 | 0 | 12 | 107 | 12 | 107 | 2.46e-23 | 93.2 |
| Msa0871190 | AT5G63090.3 | 38.542 | 96 | 59 | 0 | 12 | 107 | 12 | 107 | 2.46e-23 | 93.2 |
| Msa0871190 | AT5G63090.2 | 38.542 | 96 | 59 | 0 | 12 | 107 | 12 | 107 | 2.46e-23 | 93.2 |
| Msa0871190 | AT5G63090.1 | 38.542 | 96 | 59 | 0 | 12 | 107 | 12 | 107 | 2.46e-23 | 93.2 |
| Msa0871190 | AT1G07900.1 | 38.462 | 117 | 62 | 2 | 12 | 125 | 34 | 143 | 3.45e-22 | 90.5 |
| Msa0871190 | AT2G30340.2 | 36.275 | 102 | 65 | 0 | 7 | 108 | 49 | 150 | 7.48e-22 | 91.3 |
| Msa0871190 | AT2G23660.2 | 38.614 | 101 | 62 | 0 | 8 | 108 | 2 | 102 | 7.54e-22 | 92.0 |
| Msa0871190 | AT2G23660.3 | 38.614 | 101 | 62 | 0 | 8 | 108 | 2 | 102 | 7.54e-22 | 92.0 |
| Msa0871190 | AT2G23660.1 | 38.614 | 101 | 62 | 0 | 8 | 108 | 2 | 102 | 7.54e-22 | 92.0 |
| Msa0871190 | AT2G30340.1 | 36.275 | 102 | 65 | 0 | 7 | 108 | 48 | 149 | 7.83e-22 | 91.3 |
| Msa0871190 | AT2G40470.2 | 36.275 | 102 | 65 | 0 | 7 | 108 | 16 | 117 | 2.17e-21 | 88.6 |
| Msa0871190 | AT2G40470.1 | 36.275 | 102 | 65 | 0 | 7 | 108 | 41 | 142 | 5.00e-21 | 88.2 |
| Msa0871190 | AT3G50510.1 | 38.532 | 109 | 66 | 1 | 9 | 116 | 10 | 118 | 5.23e-21 | 87.4 |
| Msa0871190 | AT3G50510.2 | 38.532 | 109 | 66 | 1 | 9 | 116 | 10 | 118 | 5.23e-21 | 87.4 |
| Msa0871190 | AT2G28500.1 | 39.048 | 105 | 57 | 1 | 12 | 116 | 56 | 153 | 6.83e-21 | 88.2 |
| Msa0871190 | AT5G15060.1 | 45.122 | 82 | 43 | 1 | 3 | 82 | 9 | 90 | 1.14e-19 | 82.4 |
| Msa0871190 | AT3G11090.1 | 39.759 | 83 | 50 | 0 | 8 | 90 | 8 | 90 | 1.49e-19 | 82.8 |
| Msa0871190 | AT1G06280.1 | 46.053 | 76 | 41 | 0 | 10 | 85 | 23 | 98 | 5.34e-19 | 82.4 |
| Msa0871190 | AT2G42430.1 | 40.659 | 91 | 53 | 1 | 2 | 91 | 6 | 96 | 1.44e-17 | 79.3 |
| Msa0871190 | AT3G03760.1 | 34.906 | 106 | 68 | 1 | 12 | 116 | 52 | 157 | 2.53e-17 | 79.3 |
| Msa0871190 | AT4G00220.1 | 36.190 | 105 | 59 | 2 | 14 | 117 | 20 | 117 | 1.72e-16 | 76.3 |
| Msa0871190 | AT2G42440.1 | 33.094 | 139 | 74 | 4 | 12 | 149 | 8 | 128 | 9.77e-16 | 74.3 |
| Msa0871190 | AT3G58190.1 | 27.979 | 193 | 111 | 5 | 12 | 197 | 12 | 183 | 1.02e-15 | 73.9 |
| Msa0871190 | AT5G35900.1 | 29.000 | 100 | 71 | 0 | 9 | 108 | 3 | 102 | 1.12e-15 | 73.6 |
| Msa0871190 | AT5G06080.1 | 34.737 | 95 | 61 | 1 | 11 | 104 | 7 | 101 | 1.82e-15 | 72.4 |
| Msa0871190 | AT4G00210.1 | 32.090 | 134 | 83 | 2 | 12 | 144 | 12 | 138 | 2.40e-15 | 72.8 |
| Msa0871190 | AT2G19820.1 | 35.088 | 114 | 65 | 3 | 1 | 112 | 1 | 107 | 2.78e-15 | 70.5 |
| Msa0871190 | AT2G31310.1 | 35.632 | 87 | 55 | 1 | 6 | 91 | 2 | 88 | 4.47e-14 | 68.6 |
| Msa0871190 | AT2G45420.1 | 37.975 | 79 | 48 | 1 | 14 | 91 | 40 | 118 | 7.32e-14 | 69.3 |
| Msa0871190 | AT2G45410.1 | 33.621 | 116 | 74 | 3 | 14 | 127 | 19 | 133 | 2.60e-13 | 66.6 |
Find 43 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTGTGAAGAATTAT+TGG | 0.161734 | 6_1:-6088445 | Msa0871190:CDS |
| CTTTCTTCTTTGGAATTTGC+AGG | 0.258062 | 6_1:+6088995 | None:intergenic |
| TCCTTGTGTTACCATCAAAT+TGG | 0.269697 | 6_1:+6088470 | None:intergenic |
| CAAAATTTGTACTACCATTA+AGG | 0.279065 | 6_1:+6088421 | None:intergenic |
| GAAGAATTATTGGACCTTAA+TGG | 0.283903 | 6_1:-6088435 | Msa0871190:CDS |
| AGACTTTGAAACTAATTCTA+TGG | 0.287560 | 6_1:-6088547 | Msa0871190:CDS |
| GGTTTATCAGCAGGAAAATA+AGG | 0.329247 | 6_1:+6088948 | None:intergenic |
| AAGTCTTGTTTGGTATCAAT+TGG | 0.340541 | 6_1:+6088564 | None:intergenic |
| ATTAGTTTCAAAGTCTTGTT+TGG | 0.388382 | 6_1:+6088554 | None:intergenic |
| CTTTAATATCTTCGATATGT+TGG | 0.391762 | 6_1:+6088887 | None:intergenic |
| TTATGAGGGATGTCATAATA+AGG | 0.392849 | 6_1:+6088600 | None:intergenic |
| GGGTTAATAGTAACATTATG+AGG | 0.404840 | 6_1:+6088585 | None:intergenic |
| GATGTTATTATGATGTATTA+TGG | 0.406805 | 6_1:-6088774 | Msa0871190:CDS |
| TCAGCCGATCATTTAGCAAT+TGG | 0.409945 | 6_1:+6086996 | None:intergenic |
| ACATCAAGACATCCGCCAAC+GGG | 0.422560 | 6_1:+6088792 | None:intergenic |
| ATTCTTACTAGATTATTGTA+AGG | 0.440710 | 6_1:-6088712 | Msa0871190:CDS |
| GGCAACGCTCATCGTTTGTT+CGG | 0.441079 | 6_1:-6088915 | Msa0871190:CDS |
| GAAGATATTAAAGCAAGTTA+AGG | 0.448622 | 6_1:-6088877 | Msa0871190:CDS |
| AGAATGATCGATTGATAAGT+AGG | 0.452412 | 6_1:+6088656 | None:intergenic |
| AACACTTGTGGTTTATCAGC+AGG | 0.459111 | 6_1:+6088939 | None:intergenic |
| GGAACTTGAGTGCTACTAGA+AGG | 0.476590 | 6_1:+6088627 | None:intergenic |
| AGTCTTGTTTGGTATCAATT+GGG | 0.476905 | 6_1:+6088565 | None:intergenic |
| GCTGATAAACCACAAGTGTT+CGG | 0.498732 | 6_1:-6088936 | Msa0871190:CDS |
| GGGATGTCATAATAAGGATT+CGG | 0.510856 | 6_1:+6088606 | None:intergenic |
| CGTGCTCAATTCCCCGTTGG+CGG | 0.542072 | 6_1:-6088804 | Msa0871190:CDS |
| GGTTAATAGTAACATTATGA+GGG | 0.554191 | 6_1:+6088586 | None:intergenic |
| GTTATACAATTGATCGGTGG+TGG | 0.566006 | 6_1:-6088513 | Msa0871190:CDS |
| CTAATTCTATGGATGCAACA+AGG | 0.571579 | 6_1:-6088536 | Msa0871190:CDS |
| GAATGATCGATTGATAAGTA+GGG | 0.582026 | 6_1:+6088657 | None:intergenic |
| TGAGCGTTGCCGAACACTTG+TGG | 0.583347 | 6_1:+6088927 | None:intergenic |
| GGTCCAATAATTCTTCACAA+TGG | 0.586783 | 6_1:+6088442 | None:intergenic |
| ATGCGTGCTCAATTCCCCGT+TGG | 0.595015 | 6_1:-6088807 | Msa0871190:CDS |
| AACATCAAGACATCCGCCAA+CGG | 0.606412 | 6_1:+6088791 | None:intergenic |
| ACAAGGGTTATACAATTGAT+CGG | 0.617732 | 6_1:-6088519 | Msa0871190:CDS |
| TTGAGTGCTACTAGAAGGAG+CGG | 0.625473 | 6_1:+6088632 | None:intergenic |
| TAATTCTATGGATGCAACAA+GGG | 0.625530 | 6_1:-6088535 | Msa0871190:CDS |
| GATCGGTGGTGGCAATGCAA+TGG | 0.634656 | 6_1:-6088502 | Msa0871190:CDS |
| TCCAATTTGATGGTAACACA+AGG | 0.642779 | 6_1:-6088471 | Msa0871190:CDS |
| CAACAGAGGAGACACAAGCA+AGG | 0.679554 | 6_1:-6089027 | Msa0871190:CDS |
| TGTTGATAAAGTAGTAACTG+AGG | 0.694825 | 6_1:-6088370 | Msa0871190:intron |
| TACCTAATGAATATCAACAG+AGG | 0.696712 | 6_1:-6089041 | None:intergenic |
| CATCAAGACATCCGCCAACG+GGG | 0.705383 | 6_1:+6088793 | None:intergenic |
| AGGGTTATACAATTGATCGG+TGG | 0.726517 | 6_1:-6088516 | Msa0871190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTATTATTATTTTT+TGG | - | chr6_1:6087711-6087730 | Msa0871190:intron | 0.0% |
| !!! | TTTAATTATTATTATTTTTT+GGG | - | chr6_1:6087712-6087731 | Msa0871190:intron | 0.0% |
| !!! | TTTTAATTATTATTATTTTT+TGG | - | chr6_1:6087711-6087730 | Msa0871190:intron | 0.0% |
| !!! | TTTAATTATTATTATTTTTT+GGG | - | chr6_1:6087712-6087731 | Msa0871190:intron | 0.0% |
| !!! | TTTTGCTAAAAAATTTATTA+TGG | + | chr6_1:6088105-6088124 | None:intergenic | 10.0% |
| !!! | GATTTTTTAAAAAACATATT+CGG | + | chr6_1:6088443-6088462 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTAAAAAATCAAT+CGG | - | chr6_1:6088446-6088465 | Msa0871190:CDS | 10.0% |
| !!! | TTTTGCTAAAAAATTTATTA+TGG | + | chr6_1:6088105-6088124 | None:intergenic | 10.0% |
| !!! | GATTTTTTAAAAAACATATT+CGG | + | chr6_1:6088443-6088462 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTAAAAAATCAAT+CGG | - | chr6_1:6088446-6088465 | Msa0871190:CDS | 10.0% |
| !!! | TAGTACAAATTTTGATTTAA+GGG | - | chr6_1:6087627-6087646 | Msa0871190:intron | 15.0% |
| !! | TAAAGATATGTAATTAATGA+AGG | + | chr6_1:6087834-6087853 | None:intergenic | 15.0% |
| !! | TACATATCTTTAATCAATAT+AGG | - | chr6_1:6087842-6087861 | Msa0871190:intron | 15.0% |
| !!! | TTTAAGTTTAACCATTTTTT+CGG | - | chr6_1:6088140-6088159 | Msa0871190:intron | 15.0% |
| !!! | TTAACATTTTTAACCTAAAA+AGG | - | chr6_1:6088261-6088280 | Msa0871190:intron | 15.0% |
| !! | ACATTAAAACTAATCAAATT+AGG | - | chr6_1:6088645-6088664 | Msa0871190:CDS | 15.0% |
| !! | CATTAAAACTAATCAAATTA+GGG | - | chr6_1:6088646-6088665 | Msa0871190:CDS | 15.0% |
| !! | ATTAAAACTAATCAAATTAG+GGG | - | chr6_1:6088647-6088666 | Msa0871190:CDS | 15.0% |
| !!! | GTTTTTATAAGTTCTATATA+TGG | - | chr6_1:6088884-6088903 | Msa0871190:CDS | 15.0% |
| !!! | TAGTACAAATTTTGATTTAA+GGG | - | chr6_1:6087627-6087646 | Msa0871190:intron | 15.0% |
| !! | TAAAGATATGTAATTAATGA+AGG | + | chr6_1:6087834-6087853 | None:intergenic | 15.0% |
| !! | TACATATCTTTAATCAATAT+AGG | - | chr6_1:6087842-6087861 | Msa0871190:intron | 15.0% |
| !!! | TTTAAGTTTAACCATTTTTT+CGG | - | chr6_1:6088140-6088159 | Msa0871190:intron | 15.0% |
| !!! | TTAACATTTTTAACCTAAAA+AGG | - | chr6_1:6088261-6088280 | Msa0871190:intron | 15.0% |
| !! | ACATTAAAACTAATCAAATT+AGG | - | chr6_1:6088645-6088664 | Msa0871190:CDS | 15.0% |
| !! | CATTAAAACTAATCAAATTA+GGG | - | chr6_1:6088646-6088665 | Msa0871190:CDS | 15.0% |
| !! | ATTAAAACTAATCAAATTAG+GGG | - | chr6_1:6088647-6088666 | Msa0871190:CDS | 15.0% |
| !!! | GTTTTTATAAGTTCTATATA+TGG | - | chr6_1:6088884-6088903 | Msa0871190:CDS | 15.0% |
| !!! | GAAATCAATTATTTTTGAGT+CGG | - | chr6_1:6087207-6087226 | Msa0871190:intron | 20.0% |
| !! | GATGTTATTATGATGTATTA+TGG | - | chr6_1:6087265-6087284 | Msa0871190:intron | 20.0% |
| !! | ATTCTTACTAGATTATTGTA+AGG | - | chr6_1:6087327-6087346 | Msa0871190:intron | 20.0% |
| !!! | GTAGTACAAATTTTGATTTA+AGG | - | chr6_1:6087626-6087645 | Msa0871190:intron | 20.0% |
| !! | TTAAACGAAATTCAAAAGAA+AGG | + | chr6_1:6088200-6088219 | None:intergenic | 20.0% |
| !!! | AGAAAGTATGAAAGTTTTTA+GGG | + | chr6_1:6088512-6088531 | None:intergenic | 20.0% |
| !!! | AAGAAAGTATGAAAGTTTTT+AGG | + | chr6_1:6088513-6088532 | None:intergenic | 20.0% |
| !!! | TGATTAGTTTTAATGTAACA+AGG | + | chr6_1:6088641-6088660 | None:intergenic | 20.0% |
| !! | AAATAAAAGACAATGTGTTA+AGG | + | chr6_1:6088726-6088745 | None:intergenic | 20.0% |
| !!! | GAAATCAATTATTTTTGAGT+CGG | - | chr6_1:6087207-6087226 | Msa0871190:intron | 20.0% |
| !! | GATGTTATTATGATGTATTA+TGG | - | chr6_1:6087265-6087284 | Msa0871190:intron | 20.0% |
| !! | ATTCTTACTAGATTATTGTA+AGG | - | chr6_1:6087327-6087346 | Msa0871190:intron | 20.0% |
| !!! | GTAGTACAAATTTTGATTTA+AGG | - | chr6_1:6087626-6087645 | Msa0871190:intron | 20.0% |
| !! | TTAAACGAAATTCAAAAGAA+AGG | + | chr6_1:6088200-6088219 | None:intergenic | 20.0% |
| !!! | AGAAAGTATGAAAGTTTTTA+GGG | + | chr6_1:6088512-6088531 | None:intergenic | 20.0% |
| !!! | AAGAAAGTATGAAAGTTTTT+AGG | + | chr6_1:6088513-6088532 | None:intergenic | 20.0% |
| !!! | TGATTAGTTTTAATGTAACA+AGG | + | chr6_1:6088641-6088660 | None:intergenic | 20.0% |
| !! | AAATAAAAGACAATGTGTTA+AGG | + | chr6_1:6088726-6088745 | None:intergenic | 20.0% |
| ! | CTTTAATATCTTCGATATGT+TGG | + | chr6_1:6087155-6087174 | None:intergenic | 25.0% |
| ! | GAAGATATTAAAGCAAGTTA+AGG | - | chr6_1:6087162-6087181 | Msa0871190:intron | 25.0% |
| ! | GGTTAATAGTAACATTATGA+GGG | + | chr6_1:6087456-6087475 | None:intergenic | 25.0% |
| !!! | ATTAGTTTCAAAGTCTTGTT+TGG | + | chr6_1:6087488-6087507 | None:intergenic | 25.0% |
| !!! | AGACTTTGAAACTAATTCTA+TGG | - | chr6_1:6087492-6087511 | Msa0871190:intron | 25.0% |
| ! | ATTCCATTGTGAAGAATTAT+TGG | - | chr6_1:6087594-6087613 | Msa0871190:intron | 25.0% |
| ! | CAAAATTTGTACTACCATTA+AGG | + | chr6_1:6087621-6087640 | None:intergenic | 25.0% |
| !!! | AAATTTTGATTTAAGGGAAG+AGG | - | chr6_1:6087633-6087652 | Msa0871190:intron | 25.0% |
| ! | TACTTAAATAACTTGGAATG+AGG | + | chr6_1:6087991-6088010 | None:intergenic | 25.0% |
| ! | TCGACAATACTTAAATAACT+TGG | + | chr6_1:6087998-6088017 | None:intergenic | 25.0% |
| !! | TGATTCTTTTAGTCCTTTTT+AGG | + | chr6_1:6088277-6088296 | None:intergenic | 25.0% |
| !!! | AGATCAATCTGAAACAATTT+TGG | - | chr6_1:6088319-6088338 | Msa0871190:intron | 25.0% |
| ! | AAAAATCAATCGGAAAAAAG+AGG | - | chr6_1:6088456-6088475 | Msa0871190:CDS | 25.0% |
| ! | TTAATGTAACAAGGAAACTA+AGG | + | chr6_1:6088632-6088651 | None:intergenic | 25.0% |
| ! | CTTTAATATCTTCGATATGT+TGG | + | chr6_1:6087155-6087174 | None:intergenic | 25.0% |
| ! | GAAGATATTAAAGCAAGTTA+AGG | - | chr6_1:6087162-6087181 | Msa0871190:intron | 25.0% |
| ! | GGTTAATAGTAACATTATGA+GGG | + | chr6_1:6087456-6087475 | None:intergenic | 25.0% |
| !!! | ATTAGTTTCAAAGTCTTGTT+TGG | + | chr6_1:6087488-6087507 | None:intergenic | 25.0% |
| !!! | AGACTTTGAAACTAATTCTA+TGG | - | chr6_1:6087492-6087511 | Msa0871190:intron | 25.0% |
| ! | ATTCCATTGTGAAGAATTAT+TGG | - | chr6_1:6087594-6087613 | Msa0871190:intron | 25.0% |
| ! | CAAAATTTGTACTACCATTA+AGG | + | chr6_1:6087621-6087640 | None:intergenic | 25.0% |
| !!! | AAATTTTGATTTAAGGGAAG+AGG | - | chr6_1:6087633-6087652 | Msa0871190:intron | 25.0% |
| ! | TACTTAAATAACTTGGAATG+AGG | + | chr6_1:6087991-6088010 | None:intergenic | 25.0% |
| ! | TCGACAATACTTAAATAACT+TGG | + | chr6_1:6087998-6088017 | None:intergenic | 25.0% |
| !! | TGATTCTTTTAGTCCTTTTT+AGG | + | chr6_1:6088277-6088296 | None:intergenic | 25.0% |
| !!! | AGATCAATCTGAAACAATTT+TGG | - | chr6_1:6088319-6088338 | Msa0871190:intron | 25.0% |
| ! | AAAAATCAATCGGAAAAAAG+AGG | - | chr6_1:6088456-6088475 | Msa0871190:CDS | 25.0% |
| ! | TTAATGTAACAAGGAAACTA+AGG | + | chr6_1:6088632-6088651 | None:intergenic | 25.0% |
| ! | CTTTTGAACACTTTCTTCTT+TGG | + | chr6_1:6087057-6087076 | None:intergenic | 30.0% |
| !!! | CAAGATTTTGTTGTTGCAAA+GGG | + | chr6_1:6087360-6087379 | None:intergenic | 30.0% |
| !!! | TCAAGATTTTGTTGTTGCAA+AGG | + | chr6_1:6087361-6087380 | None:intergenic | 30.0% |
| GAATGATCGATTGATAAGTA+GGG | + | chr6_1:6087385-6087404 | None:intergenic | 30.0% | |
| AGAATGATCGATTGATAAGT+AGG | + | chr6_1:6087386-6087405 | None:intergenic | 30.0% | |
| TTATGAGGGATGTCATAATA+AGG | + | chr6_1:6087442-6087461 | None:intergenic | 30.0% | |
| GGGTTAATAGTAACATTATG+AGG | + | chr6_1:6087457-6087476 | None:intergenic | 30.0% | |
| !! | AGTCTTGTTTGGTATCAATT+GGG | + | chr6_1:6087477-6087496 | None:intergenic | 30.0% |
| !! | AAGTCTTGTTTGGTATCAAT+TGG | + | chr6_1:6087478-6087497 | None:intergenic | 30.0% |
| TAATTCTATGGATGCAACAA+GGG | - | chr6_1:6087504-6087523 | Msa0871190:intron | 30.0% | |
| ACAAGGGTTATACAATTGAT+CGG | - | chr6_1:6087520-6087539 | Msa0871190:intron | 30.0% | |
| GGAAGAAAAATCCAATTTGA+TGG | - | chr6_1:6087558-6087577 | Msa0871190:intron | 30.0% | |
| GAAGAATTATTGGACCTTAA+TGG | - | chr6_1:6087604-6087623 | Msa0871190:intron | 30.0% | |
| ! | TGTTGATAAAGTAGTAACTG+AGG | - | chr6_1:6087669-6087688 | Msa0871190:intron | 30.0% |
| CAGTAAAGATACGTTAATGA+AGG | + | chr6_1:6087928-6087947 | None:intergenic | 30.0% | |
| ACGTATCTTTACTGTAGTTA+AGG | - | chr6_1:6087934-6087953 | Msa0871190:intron | 30.0% | |
| !!! | GTTTAACCATTTTTTCGGAT+TGG | - | chr6_1:6088145-6088164 | Msa0871190:intron | 30.0% |
| GAATCAATGCGAAAAAGTAA+TGG | - | chr6_1:6088291-6088310 | Msa0871190:intron | 30.0% | |
| AAAAAAGAGGTCCAACTTAA+AGG | - | chr6_1:6088469-6088488 | Msa0871190:CDS | 30.0% | |
| !!! | TCTCTCTTATTTTGATCACA+TGG | - | chr6_1:6088792-6088811 | Msa0871190:CDS | 30.0% |
| ! | CTTTTGAACACTTTCTTCTT+TGG | + | chr6_1:6087057-6087076 | None:intergenic | 30.0% |
| !!! | CAAGATTTTGTTGTTGCAAA+GGG | + | chr6_1:6087360-6087379 | None:intergenic | 30.0% |
| !!! | TCAAGATTTTGTTGTTGCAA+AGG | + | chr6_1:6087361-6087380 | None:intergenic | 30.0% |
| GAATGATCGATTGATAAGTA+GGG | + | chr6_1:6087385-6087404 | None:intergenic | 30.0% | |
| AGAATGATCGATTGATAAGT+AGG | + | chr6_1:6087386-6087405 | None:intergenic | 30.0% | |
| TTATGAGGGATGTCATAATA+AGG | + | chr6_1:6087442-6087461 | None:intergenic | 30.0% | |
| GGGTTAATAGTAACATTATG+AGG | + | chr6_1:6087457-6087476 | None:intergenic | 30.0% | |
| !! | AGTCTTGTTTGGTATCAATT+GGG | + | chr6_1:6087477-6087496 | None:intergenic | 30.0% |
| !! | AAGTCTTGTTTGGTATCAAT+TGG | + | chr6_1:6087478-6087497 | None:intergenic | 30.0% |
| TAATTCTATGGATGCAACAA+GGG | - | chr6_1:6087504-6087523 | Msa0871190:intron | 30.0% | |
| ACAAGGGTTATACAATTGAT+CGG | - | chr6_1:6087520-6087539 | Msa0871190:intron | 30.0% | |
| GGAAGAAAAATCCAATTTGA+TGG | - | chr6_1:6087558-6087577 | Msa0871190:intron | 30.0% | |
| GAAGAATTATTGGACCTTAA+TGG | - | chr6_1:6087604-6087623 | Msa0871190:intron | 30.0% | |
| ! | TGTTGATAAAGTAGTAACTG+AGG | - | chr6_1:6087669-6087688 | Msa0871190:intron | 30.0% |
| CAGTAAAGATACGTTAATGA+AGG | + | chr6_1:6087928-6087947 | None:intergenic | 30.0% | |
| ACGTATCTTTACTGTAGTTA+AGG | - | chr6_1:6087934-6087953 | Msa0871190:intron | 30.0% | |
| !!! | GTTTAACCATTTTTTCGGAT+TGG | - | chr6_1:6088145-6088164 | Msa0871190:intron | 30.0% |
| GAATCAATGCGAAAAAGTAA+TGG | - | chr6_1:6088291-6088310 | Msa0871190:intron | 30.0% | |
| AAAAAAGAGGTCCAACTTAA+AGG | - | chr6_1:6088469-6088488 | Msa0871190:CDS | 30.0% | |
| !!! | TCTCTCTTATTTTGATCACA+TGG | - | chr6_1:6088792-6088811 | Msa0871190:CDS | 30.0% |
| !! | CTTTCTTCTTTGGAATTTGC+AGG | + | chr6_1:6087047-6087066 | None:intergenic | 35.0% |
| GGTTTATCAGCAGGAAAATA+AGG | + | chr6_1:6087094-6087113 | None:intergenic | 35.0% | |
| GGGATGTCATAATAAGGATT+CGG | + | chr6_1:6087436-6087455 | None:intergenic | 35.0% | |
| CTAATTCTATGGATGCAACA+AGG | - | chr6_1:6087503-6087522 | Msa0871190:intron | 35.0% | |
| ! | TCCAATTTGATGGTAACACA+AGG | - | chr6_1:6087568-6087587 | Msa0871190:intron | 35.0% |
| TCCTTGTGTTACCATCAAAT+TGG | + | chr6_1:6087572-6087591 | None:intergenic | 35.0% | |
| GGTCCAATAATTCTTCACAA+TGG | + | chr6_1:6087600-6087619 | None:intergenic | 35.0% | |
| TAAGGAGTGACACAATAAGA+AGG | - | chr6_1:6087952-6087971 | Msa0871190:intron | 35.0% | |
| TGACACAATAAGAAGGTTGA+GGG | - | chr6_1:6087959-6087978 | Msa0871190:intron | 35.0% | |
| !! | AAACCTTGTGTTAGTTTGTG+CGG | + | chr6_1:6088025-6088044 | None:intergenic | 35.0% |
| ATTATGGAAGAGAATGTGCA+CGG | + | chr6_1:6088089-6088108 | None:intergenic | 35.0% | |
| GTCTCAAAACTTGTACATCT+TGG | - | chr6_1:6088173-6088192 | Msa0871190:intron | 35.0% | |
| ATTCTCAGATAAAACGTCCT+TGG | - | chr6_1:6088411-6088430 | Msa0871190:CDS | 35.0% | |
| ATGTCTACCATCCTTTAAGT+TGG | + | chr6_1:6088483-6088502 | None:intergenic | 35.0% | |
| AATTTCATGAAGTGTGTCAC+TGG | - | chr6_1:6088571-6088590 | Msa0871190:CDS | 35.0% | |
| ACACTAGATTGTGGAGAATA+GGG | + | chr6_1:6088608-6088627 | None:intergenic | 35.0% | |
| GCATGATCAAAAAATTGGTC+AGG | + | chr6_1:6088758-6088777 | None:intergenic | 35.0% | |
| GTCGAGCATGATCAAAAAAT+TGG | + | chr6_1:6088763-6088782 | None:intergenic | 35.0% | |
| !! | CTTTCTTCTTTGGAATTTGC+AGG | + | chr6_1:6087047-6087066 | None:intergenic | 35.0% |
| GGTTTATCAGCAGGAAAATA+AGG | + | chr6_1:6087094-6087113 | None:intergenic | 35.0% | |
| GGGATGTCATAATAAGGATT+CGG | + | chr6_1:6087436-6087455 | None:intergenic | 35.0% | |
| CTAATTCTATGGATGCAACA+AGG | - | chr6_1:6087503-6087522 | Msa0871190:intron | 35.0% | |
| ! | TCCAATTTGATGGTAACACA+AGG | - | chr6_1:6087568-6087587 | Msa0871190:intron | 35.0% |
| TCCTTGTGTTACCATCAAAT+TGG | + | chr6_1:6087572-6087591 | None:intergenic | 35.0% | |
| GGTCCAATAATTCTTCACAA+TGG | + | chr6_1:6087600-6087619 | None:intergenic | 35.0% | |
| TAAGGAGTGACACAATAAGA+AGG | - | chr6_1:6087952-6087971 | Msa0871190:intron | 35.0% | |
| TGACACAATAAGAAGGTTGA+GGG | - | chr6_1:6087959-6087978 | Msa0871190:intron | 35.0% | |
| !! | AAACCTTGTGTTAGTTTGTG+CGG | + | chr6_1:6088025-6088044 | None:intergenic | 35.0% |
| ATTATGGAAGAGAATGTGCA+CGG | + | chr6_1:6088089-6088108 | None:intergenic | 35.0% | |
| GTCTCAAAACTTGTACATCT+TGG | - | chr6_1:6088173-6088192 | Msa0871190:intron | 35.0% | |
| ATTCTCAGATAAAACGTCCT+TGG | - | chr6_1:6088411-6088430 | Msa0871190:CDS | 35.0% | |
| ATGTCTACCATCCTTTAAGT+TGG | + | chr6_1:6088483-6088502 | None:intergenic | 35.0% | |
| AATTTCATGAAGTGTGTCAC+TGG | - | chr6_1:6088571-6088590 | Msa0871190:CDS | 35.0% | |
| ACACTAGATTGTGGAGAATA+GGG | + | chr6_1:6088608-6088627 | None:intergenic | 35.0% | |
| GCATGATCAAAAAATTGGTC+AGG | + | chr6_1:6088758-6088777 | None:intergenic | 35.0% | |
| GTCGAGCATGATCAAAAAAT+TGG | + | chr6_1:6088763-6088782 | None:intergenic | 35.0% | |
| AACACTTGTGGTTTATCAGC+AGG | + | chr6_1:6087103-6087122 | None:intergenic | 40.0% | |
| GCTGATAAACCACAAGTGTT+CGG | - | chr6_1:6087103-6087122 | Msa0871190:intron | 40.0% | |
| AGGGTTATACAATTGATCGG+TGG | - | chr6_1:6087523-6087542 | Msa0871190:intron | 40.0% | |
| GTTATACAATTGATCGGTGG+TGG | - | chr6_1:6087526-6087545 | Msa0871190:intron | 40.0% | |
| GTGACACAATAAGAAGGTTG+AGG | - | chr6_1:6087958-6087977 | Msa0871190:intron | 40.0% | |
| GCACAAACTAACACAAGGTT+TGG | - | chr6_1:6088024-6088043 | Msa0871190:intron | 40.0% | |
| AGTCGAAGCAAGACTATGTA+TGG | + | chr6_1:6088354-6088373 | None:intergenic | 40.0% | |
| AGATAAAACGTCCTTGGACT+GGG | - | chr6_1:6088417-6088436 | Msa0871190:CDS | 40.0% | |
| AAGAGGTCCAACTTAAAGGA+TGG | - | chr6_1:6088473-6088492 | Msa0871190:CDS | 40.0% | |
| CACACTAGATTGTGGAGAAT+AGG | + | chr6_1:6088609-6088628 | None:intergenic | 40.0% | |
| AACTAAGGCACACTAGATTG+TGG | + | chr6_1:6088617-6088636 | None:intergenic | 40.0% | |
| AACACTTGTGGTTTATCAGC+AGG | + | chr6_1:6087103-6087122 | None:intergenic | 40.0% | |
| GCTGATAAACCACAAGTGTT+CGG | - | chr6_1:6087103-6087122 | Msa0871190:intron | 40.0% | |
| AGGGTTATACAATTGATCGG+TGG | - | chr6_1:6087523-6087542 | Msa0871190:intron | 40.0% | |
| GTTATACAATTGATCGGTGG+TGG | - | chr6_1:6087526-6087545 | Msa0871190:intron | 40.0% | |
| GTGACACAATAAGAAGGTTG+AGG | - | chr6_1:6087958-6087977 | Msa0871190:intron | 40.0% | |
| GCACAAACTAACACAAGGTT+TGG | - | chr6_1:6088024-6088043 | Msa0871190:intron | 40.0% | |
| AGTCGAAGCAAGACTATGTA+TGG | + | chr6_1:6088354-6088373 | None:intergenic | 40.0% | |
| AGATAAAACGTCCTTGGACT+GGG | - | chr6_1:6088417-6088436 | Msa0871190:CDS | 40.0% | |
| AAGAGGTCCAACTTAAAGGA+TGG | - | chr6_1:6088473-6088492 | Msa0871190:CDS | 40.0% | |
| CACACTAGATTGTGGAGAAT+AGG | + | chr6_1:6088609-6088628 | None:intergenic | 40.0% | |
| AACTAAGGCACACTAGATTG+TGG | + | chr6_1:6088617-6088636 | None:intergenic | 40.0% | |
| AACATCAAGACATCCGCCAA+CGG | + | chr6_1:6087251-6087270 | None:intergenic | 45.0% | |
| ! | TTGAGTGCTACTAGAAGGAG+CGG | + | chr6_1:6087410-6087429 | None:intergenic | 45.0% |
| ! | GGAACTTGAGTGCTACTAGA+AGG | + | chr6_1:6087415-6087434 | None:intergenic | 45.0% |
| TGTCCGCACAAACTAACACA+AGG | - | chr6_1:6088019-6088038 | Msa0871190:intron | 45.0% | |
| !!! | CAAGGTTTGGTTTTCTGCCA+TGG | - | chr6_1:6088037-6088056 | Msa0871190:intron | 45.0% |
| ATAGGTCTGGGAGATTTCCA+TGG | + | chr6_1:6088057-6088076 | None:intergenic | 45.0% | |
| CGTGAGCCAATCCGAAAAAA+TGG | + | chr6_1:6088154-6088173 | None:intergenic | 45.0% | |
| TCTTGCTTCGACTGTGAATG+AGG | - | chr6_1:6088361-6088380 | Msa0871190:intron | 45.0% | |
| CAGATAAAACGTCCTTGGAC+TGG | - | chr6_1:6088416-6088435 | Msa0871190:CDS | 45.0% | |
| AACATCAAGACATCCGCCAA+CGG | + | chr6_1:6087251-6087270 | None:intergenic | 45.0% | |
| ! | TTGAGTGCTACTAGAAGGAG+CGG | + | chr6_1:6087410-6087429 | None:intergenic | 45.0% |
| ! | GGAACTTGAGTGCTACTAGA+AGG | + | chr6_1:6087415-6087434 | None:intergenic | 45.0% |
| TGTCCGCACAAACTAACACA+AGG | - | chr6_1:6088019-6088038 | Msa0871190:intron | 45.0% | |
| !!! | CAAGGTTTGGTTTTCTGCCA+TGG | - | chr6_1:6088037-6088056 | Msa0871190:intron | 45.0% |
| ATAGGTCTGGGAGATTTCCA+TGG | + | chr6_1:6088057-6088076 | None:intergenic | 45.0% | |
| CGTGAGCCAATCCGAAAAAA+TGG | + | chr6_1:6088154-6088173 | None:intergenic | 45.0% | |
| TCTTGCTTCGACTGTGAATG+AGG | - | chr6_1:6088361-6088380 | Msa0871190:intron | 45.0% | |
| CAGATAAAACGTCCTTGGAC+TGG | - | chr6_1:6088416-6088435 | Msa0871190:CDS | 45.0% | |
| CAACAGAGGAGACACAAGCA+AGG | - | chr6_1:6087012-6087031 | Msa0871190:intron | 50.0% | |
| GGCAACGCTCATCGTTTGTT+CGG | - | chr6_1:6087124-6087143 | Msa0871190:intron | 50.0% | |
| ACATCAAGACATCCGCCAAC+GGG | + | chr6_1:6087250-6087269 | None:intergenic | 50.0% | |
| ! | CGGCTGAAAGGTATAGGTCT+GGG | + | chr6_1:6088069-6088088 | None:intergenic | 50.0% |
| ! | ACGGCTGAAAGGTATAGGTC+TGG | + | chr6_1:6088070-6088089 | None:intergenic | 50.0% |
| ! | TGTGCACGGCTGAAAGGTAT+AGG | + | chr6_1:6088075-6088094 | None:intergenic | 50.0% |
| AGAGAATGTGCACGGCTGAA+AGG | + | chr6_1:6088081-6088100 | None:intergenic | 50.0% | |
| GTGAATGAGGCTCATGCAAG+TGG | - | chr6_1:6088374-6088393 | Msa0871190:CDS | 50.0% | |
| AACATATTCGGCCCAGTCCA+AGG | + | chr6_1:6088431-6088450 | None:intergenic | 50.0% | |
| CAACAGAGGAGACACAAGCA+AGG | - | chr6_1:6087012-6087031 | Msa0871190:intron | 50.0% | |
| GGCAACGCTCATCGTTTGTT+CGG | - | chr6_1:6087124-6087143 | Msa0871190:intron | 50.0% | |
| ACATCAAGACATCCGCCAAC+GGG | + | chr6_1:6087250-6087269 | None:intergenic | 50.0% | |
| ! | CGGCTGAAAGGTATAGGTCT+GGG | + | chr6_1:6088069-6088088 | None:intergenic | 50.0% |
| ! | ACGGCTGAAAGGTATAGGTC+TGG | + | chr6_1:6088070-6088089 | None:intergenic | 50.0% |
| ! | TGTGCACGGCTGAAAGGTAT+AGG | + | chr6_1:6088075-6088094 | None:intergenic | 50.0% |
| AGAGAATGTGCACGGCTGAA+AGG | + | chr6_1:6088081-6088100 | None:intergenic | 50.0% | |
| GTGAATGAGGCTCATGCAAG+TGG | - | chr6_1:6088374-6088393 | Msa0871190:CDS | 50.0% | |
| AACATATTCGGCCCAGTCCA+AGG | + | chr6_1:6088431-6088450 | None:intergenic | 50.0% | |
| ! | TGAGCGTTGCCGAACACTTG+TGG | + | chr6_1:6087115-6087134 | None:intergenic | 55.0% |
| ATGCGTGCTCAATTCCCCGT+TGG | - | chr6_1:6087232-6087251 | Msa0871190:intron | 55.0% | |
| CATCAAGACATCCGCCAACG+GGG | + | chr6_1:6087249-6087268 | None:intergenic | 55.0% | |
| ! | GATCGGTGGTGGCAATGCAA+TGG | - | chr6_1:6087537-6087556 | Msa0871190:intron | 55.0% |
| ! | TGAGCGTTGCCGAACACTTG+TGG | + | chr6_1:6087115-6087134 | None:intergenic | 55.0% |
| ATGCGTGCTCAATTCCCCGT+TGG | - | chr6_1:6087232-6087251 | Msa0871190:intron | 55.0% | |
| CATCAAGACATCCGCCAACG+GGG | + | chr6_1:6087249-6087268 | None:intergenic | 55.0% | |
| ! | GATCGGTGGTGGCAATGCAA+TGG | - | chr6_1:6087537-6087556 | Msa0871190:intron | 55.0% |
| CGTGCTCAATTCCCCGTTGG+CGG | - | chr6_1:6087235-6087254 | Msa0871190:intron | 60.0% | |
| CGTGCTCAATTCCCCGTTGG+CGG | - | chr6_1:6087235-6087254 | Msa0871190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6087004 | 6089057 | 6087004 | ID=Msa0871190;Name=Msa0871190 |
| chr6_1 | mRNA | 6087004 | 6089057 | 6087004 | ID=Msa0871190-mRNA-1;Parent=Msa0871190;Name=Msa0871190-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|235 |
| chr6_1 | exon | 6088371 | 6089057 | 6088371 | ID=Msa0871190-mRNA-1:exon:1812;Parent=Msa0871190-mRNA-1 |
| chr6_1 | exon | 6087004 | 6087024 | 6087004 | ID=Msa0871190-mRNA-1:exon:1811;Parent=Msa0871190-mRNA-1 |
| chr6_1 | CDS | 6088371 | 6089057 | 6088371 | ID=Msa0871190-mRNA-1:cds;Parent=Msa0871190-mRNA-1 |
| chr6_1 | CDS | 6087004 | 6087024 | 6087004 | ID=Msa0871190-mRNA-1:cds;Parent=Msa0871190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
