Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871350 | XP_024641950.1 | 53.333 | 105 | 48 | 1 | 90 | 193 | 224 | 328 | 1.20e-28 | 129 |
| Msa0871350 | XP_024641950.1 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 2.99e-100 | 323 |
| Msa0871350 | XP_024641950.1 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 3.86e-121 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871350 | sp|Q3E7I5|FRS12_ARATH | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 1.69e-15 | 81.6 |
| Msa0871350 | sp|Q3E7I5|FRS12_ARATH | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 9.76e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871350 | A0A396HGW4 | 53.333 | 105 | 48 | 1 | 90 | 193 | 224 | 328 | 5.73e-29 | 129 |
| Msa0871350 | A0A396HGW4 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 1.43e-100 | 323 |
| Msa0871350 | A0A396HGW4 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 1.84e-121 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0871350 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871350 | MtrunA17_Chr6g0458391 | 90.769 | 195 | 18 | 0 | 1 | 195 | 1 | 195 | 3.55e-125 | 377 |
| Msa0871350 | MtrunA17_Chr6g0458391 | 89.506 | 162 | 17 | 0 | 192 | 353 | 544 | 705 | 2.75e-104 | 323 |
| Msa0871350 | MtrunA17_Chr6g0458391 | 53.333 | 105 | 48 | 1 | 90 | 193 | 224 | 328 | 1.10e-32 | 129 |
| Msa0871350 | MtrunA17_Chr1g0203721 | 34.568 | 162 | 106 | 0 | 192 | 353 | 402 | 563 | 2.43e-32 | 128 |
| Msa0871350 | MtrunA17_Chr1g0203721 | 47.656 | 128 | 63 | 2 | 93 | 216 | 65 | 192 | 4.02e-31 | 124 |
| Msa0871350 | MtrunA17_Chr3g0082121 | 41.007 | 139 | 78 | 3 | 64 | 198 | 14 | 152 | 7.47e-21 | 94.4 |
| Msa0871350 | MtrunA17_Chr3g0082121 | 35.714 | 126 | 80 | 1 | 195 | 319 | 375 | 500 | 5.17e-18 | 85.5 |
| Msa0871350 | MtrunA17_Chr5g0401121 | 36.090 | 133 | 80 | 3 | 65 | 192 | 27 | 159 | 6.03e-19 | 83.2 |
| Msa0871350 | MtrunA17_Chr7g0233911 | 34.416 | 154 | 93 | 4 | 54 | 204 | 2 | 150 | 1.17e-18 | 83.6 |
| Msa0871350 | MtrunA17_Chr2g0329421 | 34.615 | 130 | 84 | 1 | 65 | 194 | 1 | 129 | 2.32e-17 | 80.1 |
| Msa0871350 | MtrunA17_Chr4g0033611 | 31.818 | 154 | 87 | 3 | 91 | 242 | 76 | 213 | 1.27e-16 | 79.0 |
| Msa0871350 | MtrunA17_Chr2g0287061 | 37.037 | 108 | 56 | 1 | 84 | 191 | 176 | 271 | 3.01e-16 | 80.5 |
| Msa0871350 | MtrunA17_Chr2g0287061 | 33.333 | 123 | 70 | 1 | 67 | 189 | 5 | 115 | 1.05e-12 | 69.3 |
| Msa0871350 | MtrunA17_Chr7g0258861 | 40.187 | 107 | 59 | 3 | 91 | 194 | 10 | 114 | 1.74e-15 | 76.3 |
| Msa0871350 | MtrunA17_Chr8g0363841 | 30.935 | 139 | 95 | 1 | 191 | 328 | 352 | 490 | 3.23e-15 | 77.0 |
| Msa0871350 | MtrunA17_Chr5g0448761 | 29.530 | 149 | 105 | 0 | 203 | 351 | 414 | 562 | 4.87e-15 | 76.6 |
| Msa0871350 | MtrunA17_Chr5g0448761 | 37.705 | 122 | 67 | 4 | 89 | 201 | 58 | 179 | 2.25e-13 | 71.6 |
| Msa0871350 | MtrunA17_Chr5g0448511 | 27.517 | 149 | 108 | 0 | 203 | 351 | 186 | 334 | 7.75e-14 | 72.8 |
| Msa0871350 | MtrunA17_Chr3g0078041 | 37.143 | 105 | 64 | 2 | 91 | 193 | 50 | 154 | 2.71e-13 | 68.6 |
| Msa0871350 | MtrunA17_Chr2g0276841 | 34.615 | 130 | 73 | 4 | 91 | 214 | 70 | 193 | 2.85e-13 | 71.2 |
| Msa0871350 | MtrunA17_Chr2g0329361 | 26.708 | 161 | 107 | 4 | 37 | 194 | 15 | 167 | 5.44e-13 | 68.2 |
| Msa0871350 | MtrunA17_Chr2g0294841 | 32.836 | 134 | 79 | 4 | 70 | 192 | 22 | 155 | 6.36e-13 | 70.1 |
| Msa0871350 | MtrunA17_Chr2g0324011 | 27.848 | 158 | 113 | 1 | 192 | 348 | 346 | 503 | 1.08e-12 | 69.3 |
| Msa0871350 | MtrunA17_Chr2g0324011 | 39.806 | 103 | 58 | 4 | 91 | 191 | 10 | 110 | 4.03e-12 | 67.4 |
| Msa0871350 | MtrunA17_Chr7g0238821 | 39.394 | 99 | 56 | 4 | 95 | 191 | 1 | 97 | 2.38e-12 | 63.2 |
| Msa0871350 | MtrunA17_Chr1g0202341 | 29.054 | 148 | 105 | 0 | 203 | 350 | 398 | 545 | 2.62e-12 | 68.2 |
| Msa0871350 | MtrunA17_Chr1g0202341 | 35.455 | 110 | 65 | 3 | 89 | 194 | 49 | 156 | 3.16e-12 | 67.8 |
| Msa0871350 | MtrunA17_Chr2g0308841 | 22.561 | 164 | 126 | 1 | 191 | 353 | 3 | 166 | 1.17e-11 | 64.3 |
| Msa0871350 | MtrunA17_Chr2g0287651 | 35.135 | 111 | 66 | 4 | 93 | 199 | 77 | 185 | 8.43e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871350 | AT3G07500.1 | 39.496 | 119 | 71 | 1 | 75 | 192 | 17 | 135 | 2.16e-19 | 86.3 |
| Msa0871350 | AT3G59470.3 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 5.09e-19 | 85.9 |
| Msa0871350 | AT3G59470.1 | 36.923 | 130 | 80 | 1 | 63 | 192 | 44 | 171 | 5.09e-19 | 85.9 |
| Msa0871350 | AT3G59470.2 | 36.923 | 130 | 80 | 1 | 63 | 192 | 56 | 183 | 5.76e-19 | 85.9 |
| Msa0871350 | AT5G18960.2 | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 1.72e-16 | 81.6 |
| Msa0871350 | AT5G18960.2 | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 9.92e-14 | 73.2 |
| Msa0871350 | AT5G18960.1 | 37.864 | 103 | 52 | 1 | 89 | 191 | 41 | 131 | 1.72e-16 | 81.6 |
| Msa0871350 | AT5G18960.1 | 36.634 | 101 | 52 | 1 | 91 | 191 | 211 | 299 | 9.92e-14 | 73.2 |
| Msa0871350 | AT4G38180.1 | 31.169 | 154 | 106 | 0 | 200 | 353 | 420 | 573 | 4.27e-16 | 80.5 |
| Msa0871350 | AT4G38180.1 | 38.017 | 121 | 67 | 3 | 89 | 201 | 71 | 191 | 3.01e-15 | 77.8 |
| Msa0871350 | AT3G06250.2 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 5.84e-16 | 79.7 |
| Msa0871350 | AT3G06250.2 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 2.83e-13 | 71.6 |
| Msa0871350 | AT3G06250.1 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 5.84e-16 | 79.7 |
| Msa0871350 | AT3G06250.1 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 2.83e-13 | 71.6 |
| Msa0871350 | AT3G06250.3 | 35.780 | 109 | 58 | 1 | 83 | 191 | 20 | 116 | 5.84e-16 | 79.7 |
| Msa0871350 | AT3G06250.3 | 35.644 | 101 | 53 | 1 | 91 | 191 | 190 | 278 | 2.83e-13 | 71.6 |
| Msa0871350 | AT4G12850.4 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 1.04e-14 | 70.9 |
| Msa0871350 | AT4G12850.2 | 37.374 | 99 | 60 | 1 | 91 | 189 | 11 | 107 | 1.42e-14 | 70.5 |
| Msa0871350 | AT4G12850.1 | 36.634 | 101 | 62 | 1 | 91 | 191 | 11 | 109 | 1.48e-14 | 71.6 |
| Msa0871350 | AT4G38170.1 | 27.160 | 162 | 117 | 1 | 190 | 351 | 176 | 336 | 2.04e-13 | 71.6 |
| Msa0871350 | AT2G43280.1 | 32.231 | 121 | 76 | 2 | 77 | 193 | 8 | 126 | 5.20e-13 | 67.8 |
| Msa0871350 | AT1G10240.2 | 34.586 | 133 | 79 | 4 | 70 | 194 | 25 | 157 | 2.95e-12 | 68.6 |
| Msa0871350 | AT1G10240.1 | 34.586 | 133 | 79 | 4 | 70 | 194 | 25 | 157 | 2.95e-12 | 68.6 |
| Msa0871350 | AT1G76320.1 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.19e-11 | 66.6 |
| Msa0871350 | AT1G76320.4 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.19e-11 | 66.6 |
| Msa0871350 | AT1G76320.2 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.21e-11 | 66.6 |
| Msa0871350 | AT1G76320.3 | 28.387 | 155 | 111 | 0 | 195 | 349 | 328 | 482 | 1.98e-11 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATGCTTCATATTCTTTC+TGG | 0.098501 | 6_1:-6257447 | None:intergenic |
| TCGAATTCCATGCCAATATT+TGG | 0.165608 | 6_1:-6255690 | None:intergenic |
| GTTTCCTGTTGAAATTTCTT+TGG | 0.213769 | 6_1:-6255876 | None:intergenic |
| TGGAATATCTCAAATATCTT+TGG | 0.250238 | 6_1:-6257427 | None:intergenic |
| CCGGCATATGCCAGCCCTAA+TGG | 0.285010 | 6_1:+6257363 | Msa0871350:CDS |
| ATGTAATGATATCGCCCATT+AGG | 0.298549 | 6_1:-6257378 | None:intergenic |
| AATACGAAATTGGTCTTCAT+TGG | 0.304948 | 6_1:-6255571 | None:intergenic |
| GTCTATGGCAGGTGAATCTT+CGG | 0.322499 | 6_1:-6255821 | None:intergenic |
| TCAAATATCTTTGGTGTGTA+TGG | 0.331453 | 6_1:-6257418 | None:intergenic |
| CTTCCATTTCTCAAGCATCT+TGG | 0.339707 | 6_1:+6257286 | Msa0871350:CDS |
| ATATATGTGGCGCCAAATAT+TGG | 0.340354 | 6_1:+6255678 | Msa0871350:CDS |
| GGATTTGTATGGCCTTTGTT+AGG | 0.350707 | 6_1:-6255855 | None:intergenic |
| ATCAACAAAAGTAGGATAGA+TGG | 0.360653 | 6_1:+6255786 | Msa0871350:CDS |
| TGCTAGCGTCAATACGAAAT+TGG | 0.360891 | 6_1:-6255581 | None:intergenic |
| CGGCATATGCCAGCCCTAAT+GGG | 0.368995 | 6_1:+6257364 | Msa0871350:CDS |
| TTCCATTTCTCAAGCATCTT+GGG | 0.371604 | 6_1:+6257287 | Msa0871350:CDS |
| GTCTTCATTGGAAGTATTTG+AGG | 0.393019 | 6_1:-6255559 | None:intergenic |
| TGTAATGATATCGCCCATTA+GGG | 0.398727 | 6_1:-6257377 | None:intergenic |
| TTCCCAAGATGCTTGAGAAA+TGG | 0.402172 | 6_1:-6257289 | None:intergenic |
| TAGGACGAAAACCTTGTCTA+TGG | 0.403464 | 6_1:-6255836 | None:intergenic |
| GAAATTTCTTTGGATTTGTA+TGG | 0.410226 | 6_1:-6255866 | None:intergenic |
| CACTTTACTGTCTGCAGCAC+AGG | 0.414311 | 6_1:-6255451 | None:intergenic |
| GAAAGGTTTCAGCATAAGAA+AGG | 0.423022 | 6_1:+6255758 | Msa0871350:CDS |
| GTGACACGAAACTTGCCATT+TGG | 0.430039 | 6_1:-6255939 | None:intergenic |
| TCTGCAGCACAGGAATCCTT+CGG | 0.440191 | 6_1:-6255441 | None:intergenic |
| TCCATCTGAGTAAGGCCAAC+AGG | 0.444164 | 6_1:-6255516 | None:intergenic |
| CCATTAGGGCTGGCATATGC+CGG | 0.448770 | 6_1:-6257363 | None:intergenic |
| CAAAATCCTCTTCTTCCTCA+TGG | 0.453789 | 6_1:-6257069 | None:intergenic |
| CTGCAGCACAGGAATCCTTC+GGG | 0.455610 | 6_1:-6255440 | None:intergenic |
| TCTCAAGCATCTTGGGAAGA+TGG | 0.458795 | 6_1:+6257294 | Msa0871350:CDS |
| TCTATGGCAGGTGAATCTTC+GGG | 0.473803 | 6_1:-6255820 | None:intergenic |
| AGGATTTCATCAACAAAAGT+AGG | 0.483308 | 6_1:+6255778 | Msa0871350:CDS |
| AACATCAAGGTTGAGAGAAA+AGG | 0.485559 | 6_1:+6257854 | Msa0871350:CDS |
| TTTCGTATGCTATGGCCCAT+TGG | 0.485848 | 6_1:-6257171 | None:intergenic |
| AGTCAAATGTGCCAAGCAAC+CGG | 0.486331 | 6_1:-6255904 | None:intergenic |
| AAATCCAAAGAAATTTCAAC+AGG | 0.487037 | 6_1:+6255872 | Msa0871350:CDS |
| ACTATTTCTCGTCAGCCAAA+TGG | 0.488160 | 6_1:+6255924 | Msa0871350:CDS |
| AACAAGTATGCTATTATGAA+AGG | 0.494730 | 6_1:+6255741 | Msa0871350:CDS |
| TTTCAACAGGAAACAAGAAC+CGG | 0.495286 | 6_1:+6255885 | Msa0871350:CDS |
| TTACTTCCTGGAAAACATCA+AGG | 0.500581 | 6_1:+6257841 | Msa0871350:CDS |
| CTCTGCTATAGAGGTAGCAT+CGG | 0.505769 | 6_1:-6255625 | None:intergenic |
| TCCTGTTGGCCTTACTCAGA+TGG | 0.506262 | 6_1:+6255515 | Msa0871350:CDS |
| CAATGATTTCCATCTGAGTA+AGG | 0.506463 | 6_1:-6255524 | None:intergenic |
| GGAAACAAGAACCGGTTGCT+TGG | 0.507283 | 6_1:+6255893 | Msa0871350:CDS |
| TTGGGAAGATGGTGACTGAT+TGG | 0.508876 | 6_1:+6257305 | Msa0871350:CDS |
| TATTGGCATGGAATTCGAAT+CGG | 0.511843 | 6_1:+6255695 | Msa0871350:CDS |
| ATACGAAAGCAGAGACCAAT+GGG | 0.513423 | 6_1:+6257156 | Msa0871350:CDS |
| AGTAACGGTCTCTGCTATAG+AGG | 0.516564 | 6_1:-6255634 | None:intergenic |
| AATATGTCTTTCGTATGCTA+TGG | 0.517789 | 6_1:-6257179 | None:intergenic |
| ACGAAAACCTTGTCTATGGC+AGG | 0.521032 | 6_1:-6255832 | None:intergenic |
| TCTGCTATAGAGGTAGCATC+GGG | 0.521378 | 6_1:-6255624 | None:intergenic |
| ATGATATCGCCCATTAGGGC+TGG | 0.523553 | 6_1:-6257373 | None:intergenic |
| TGCAAGCAAGCTTGCCATGT+CGG | 0.539631 | 6_1:-6257209 | None:intergenic |
| CTCATTTGTTACATCAGTAA+CGG | 0.549751 | 6_1:-6255649 | None:intergenic |
| CATGGACATGTATAATCTGT+GGG | 0.560503 | 6_1:+6257111 | Msa0871350:CDS |
| TAATGCATGGAGTACTCTCA+TGG | 0.560601 | 6_1:+6257093 | Msa0871350:CDS |
| AGTAGTGATTGATATGGGGC+AGG | 0.561170 | 6_1:+6255407 | None:intergenic |
| AGTGCAAATGCTCATCCTGT+TGG | 0.564210 | 6_1:+6255501 | Msa0871350:CDS |
| AGCATGTCTAAATCTAGTGC+TGG | 0.569440 | 6_1:+6257462 | Msa0871350:CDS |
| TCATGGACATGTATAATCTG+TGG | 0.576180 | 6_1:+6257110 | Msa0871350:CDS |
| TATACGAAAGCAGAGACCAA+TGG | 0.578422 | 6_1:+6257155 | Msa0871350:CDS |
| GGTGACTGATTGGCACTACA+AGG | 0.591637 | 6_1:+6257315 | Msa0871350:CDS |
| CTGGAGCATTGCAGTGAGAG+TGG | 0.592335 | 6_1:+6257481 | Msa0871350:CDS |
| AAATGAGGAGGAAATATATG+TGG | 0.601435 | 6_1:+6255665 | Msa0871350:CDS |
| TACTGATGTAACAAATGAGG+AGG | 0.606710 | 6_1:+6255653 | Msa0871350:CDS |
| CGTTACTGATGTAACAAATG+AGG | 0.607025 | 6_1:+6255650 | Msa0871350:CDS |
| AAGCTAATTATGATGCAAGC+CGG | 0.611824 | 6_1:+6257344 | Msa0871350:CDS |
| AGATTCACCTGCCATAGACA+AGG | 0.613560 | 6_1:+6255825 | Msa0871350:CDS |
| TTTCGTATTGACGCTAGCAG+AGG | 0.623277 | 6_1:+6255585 | Msa0871350:CDS |
| TGTGGCGCCAAATATTGGCA+TGG | 0.636247 | 6_1:+6255683 | Msa0871350:CDS |
| AAGCACGTAAAGAATGACTC+AGG | 0.637372 | 6_1:+6257259 | Msa0871350:CDS |
| ATAATCTGTGGGAAAACGAA+TGG | 0.659852 | 6_1:+6257122 | Msa0871350:CDS |
| GCAGGAGAATCAATGCCCGA+AGG | 0.685839 | 6_1:+6255425 | Msa0871350:CDS |
| CTGCTATAGAGGTAGCATCG+GGG | 0.739070 | 6_1:-6255623 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAATAACAAACATATTT+TGG | + | chr6_1:6256645-6256664 | Msa0871350:intron | 15.0% |
| !!! | TCAAATAACAAACATATTTT+GGG | + | chr6_1:6256646-6256665 | Msa0871350:intron | 15.0% |
| !! | TTATCACAAAATACAAAAAA+TGG | - | chr6_1:6257799-6257818 | None:intergenic | 15.0% |
| !!! | AAATTCATTTTTTTCTGTGA+TGG | - | chr6_1:6256023-6256042 | None:intergenic | 20.0% |
| !! | TGAGAAAAGATTATGTAAAT+AGG | + | chr6_1:6256174-6256193 | Msa0871350:intron | 20.0% |
| !! | TGATTATTTATACCAAGAAA+TGG | - | chr6_1:6256767-6256786 | None:intergenic | 20.0% |
| !! | CAAATCATTTACAAAAGAAT+CGG | - | chr6_1:6257032-6257051 | None:intergenic | 20.0% |
| !! | TTCTTGATTATAGAAACATA+AGG | + | chr6_1:6257644-6257663 | Msa0871350:intron | 20.0% |
| !!! | TTTGAACTTTCAGTTTTTAA+AGG | + | chr6_1:6257716-6257735 | Msa0871350:intron | 20.0% |
| !!! | ATTTTAACATGTCATTTAGA+AGG | + | chr6_1:6257742-6257761 | Msa0871350:intron | 20.0% |
| ! | AACAAGTATGCTATTATGAA+AGG | + | chr6_1:6255741-6255760 | Msa0871350:CDS | 25.0% |
| ! | GAAATTTCTTTGGATTTGTA+TGG | - | chr6_1:6255869-6255888 | None:intergenic | 25.0% |
| ! | AAATCCAAAGAAATTTCAAC+AGG | + | chr6_1:6255872-6255891 | Msa0871350:CDS | 25.0% |
| ! | TTCTTGGTATAAATAATCAC+AGG | + | chr6_1:6256768-6256787 | Msa0871350:intron | 25.0% |
| ! | TGGAATATCTCAAATATCTT+TGG | - | chr6_1:6257430-6257449 | None:intergenic | 25.0% |
| !! | AATCAAGAACTTTTAATGCA+TGG | - | chr6_1:6257633-6257652 | None:intergenic | 25.0% |
| !!! | AGAAGGTTTTTAATTAACCA+AGG | + | chr6_1:6257759-6257778 | Msa0871350:intron | 25.0% |
| ! | TGTGATAATCTACTGATATA+AGG | + | chr6_1:6257811-6257830 | Msa0871350:intron | 25.0% |
| !! | AATACGAAATTGGTCTTCAT+TGG | - | chr6_1:6255574-6255593 | None:intergenic | 30.0% |
| ! | CTCATTTGTTACATCAGTAA+CGG | - | chr6_1:6255652-6255671 | None:intergenic | 30.0% |
| AAATGAGGAGGAAATATATG+TGG | + | chr6_1:6255665-6255684 | Msa0871350:CDS | 30.0% | |
| AGGATTTCATCAACAAAAGT+AGG | + | chr6_1:6255778-6255797 | Msa0871350:CDS | 30.0% | |
| ATCAACAAAAGTAGGATAGA+TGG | + | chr6_1:6255786-6255805 | Msa0871350:CDS | 30.0% | |
| GTTTCCTGTTGAAATTTCTT+TGG | - | chr6_1:6255879-6255898 | None:intergenic | 30.0% | |
| GTAAATAGGAGTAAAGTTGA+TGG | + | chr6_1:6256188-6256207 | Msa0871350:intron | 30.0% | |
| AAGAAGATTTACTTGCTTCA+GGG | + | chr6_1:6256223-6256242 | Msa0871350:intron | 30.0% | |
| GTTGATATTCACAATTCACA+GGG | - | chr6_1:6256505-6256524 | None:intergenic | 30.0% | |
| ! | AGTTGATATTCACAATTCAC+AGG | - | chr6_1:6256506-6256525 | None:intergenic | 30.0% |
| CTTTCAAAGCAAGAAATCAA+AGG | + | chr6_1:6256583-6256602 | Msa0871350:intron | 30.0% | |
| ! | ATAGTTGACTACAGTGATTT+TGG | + | chr6_1:6256683-6256702 | Msa0871350:intron | 30.0% |
| ! | CACAGGCAAATGATTATTTT+CGG | + | chr6_1:6256785-6256804 | Msa0871350:intron | 30.0% |
| ACTTCTATATGATGAATCTG+TGG | + | chr6_1:6256814-6256833 | Msa0871350:intron | 30.0% | |
| ! | AATCTGTGGAATCTTTTAAG+TGG | + | chr6_1:6256828-6256847 | Msa0871350:intron | 30.0% |
| !! | TTGATTTGTTTGAGGTAGTA+TGG | - | chr6_1:6256945-6256964 | None:intergenic | 30.0% |
| ! | AAGAGGATTTTGTTAATGCA+TGG | + | chr6_1:6257080-6257099 | Msa0871350:CDS | 30.0% |
| AATATGTCTTTCGTATGCTA+TGG | - | chr6_1:6257182-6257201 | None:intergenic | 30.0% | |
| ! | TCAAATATCTTTGGTGTGTA+TGG | - | chr6_1:6257421-6257440 | None:intergenic | 30.0% |
| CAATGATTTCCATCTGAGTA+AGG | - | chr6_1:6255527-6255546 | None:intergenic | 35.0% | |
| !! | GTCTTCATTGGAAGTATTTG+AGG | - | chr6_1:6255562-6255581 | None:intergenic | 35.0% |
| CGTTACTGATGTAACAAATG+AGG | + | chr6_1:6255650-6255669 | Msa0871350:CDS | 35.0% | |
| TACTGATGTAACAAATGAGG+AGG | + | chr6_1:6255653-6255672 | Msa0871350:CDS | 35.0% | |
| ATATATGTGGCGCCAAATAT+TGG | + | chr6_1:6255678-6255697 | Msa0871350:CDS | 35.0% | |
| TCGAATTCCATGCCAATATT+TGG | - | chr6_1:6255693-6255712 | None:intergenic | 35.0% | |
| TATTGGCATGGAATTCGAAT+CGG | + | chr6_1:6255695-6255714 | Msa0871350:CDS | 35.0% | |
| GAAAGGTTTCAGCATAAGAA+AGG | + | chr6_1:6255758-6255777 | Msa0871350:CDS | 35.0% | |
| TTTCAACAGGAAACAAGAAC+CGG | + | chr6_1:6255885-6255904 | Msa0871350:CDS | 35.0% | |
| TTATAATGCATATGCTGCAC+AGG | + | chr6_1:6256139-6256158 | Msa0871350:intron | 35.0% | |
| CAAGAAGATTTACTTGCTTC+AGG | + | chr6_1:6256222-6256241 | Msa0871350:intron | 35.0% | |
| AAAACACAATCATGAGCTTG+TGG | + | chr6_1:6256379-6256398 | Msa0871350:intron | 35.0% | |
| ATTTCTCTTGTGCGTTTGAA+AGG | - | chr6_1:6256530-6256549 | None:intergenic | 35.0% | |
| AGGAAGAAGTCGAAAAGATT+AGG | + | chr6_1:6256555-6256574 | Msa0871350:intron | 35.0% | |
| !! | GCTGTTTCATGTTTTTATCG+AGG | + | chr6_1:6256850-6256869 | Msa0871350:intron | 35.0% |
| TGATCTCTTAGGATTGTCTT+TGG | - | chr6_1:6256893-6256912 | None:intergenic | 35.0% | |
| CTATTGCATCTTGATCTCTT+AGG | - | chr6_1:6256904-6256923 | None:intergenic | 35.0% | |
| !! | CAAACTCGTTGATTTGTTTG+AGG | - | chr6_1:6256953-6256972 | None:intergenic | 35.0% |
| CAAATCAACGAGTTTGTGTA+TGG | + | chr6_1:6256957-6256976 | Msa0871350:intron | 35.0% | |
| ! | TTTTAACCATGAGGAAGAAG+AGG | + | chr6_1:6257063-6257082 | Msa0871350:CDS | 35.0% |
| TCATGGACATGTATAATCTG+TGG | + | chr6_1:6257110-6257129 | Msa0871350:CDS | 35.0% | |
| CATGGACATGTATAATCTGT+GGG | + | chr6_1:6257111-6257130 | Msa0871350:CDS | 35.0% | |
| ATAATCTGTGGGAAAACGAA+TGG | + | chr6_1:6257122-6257141 | Msa0871350:CDS | 35.0% | |
| !!! | ACATATTTTTTGTGCCGACA+TGG | + | chr6_1:6257195-6257214 | Msa0871350:CDS | 35.0% |
| TTCCATTTCTCAAGCATCTT+GGG | + | chr6_1:6257287-6257306 | Msa0871350:CDS | 35.0% | |
| AAGCTAATTATGATGCAAGC+CGG | + | chr6_1:6257344-6257363 | Msa0871350:CDS | 35.0% | |
| TGTAATGATATCGCCCATTA+GGG | - | chr6_1:6257380-6257399 | None:intergenic | 35.0% | |
| ATGTAATGATATCGCCCATT+AGG | - | chr6_1:6257381-6257400 | None:intergenic | 35.0% | |
| GACATGCTTCATATTCTTTC+TGG | - | chr6_1:6257450-6257469 | None:intergenic | 35.0% | |
| CGAAAGTAACTGTATACTCT+CGG | - | chr6_1:6257546-6257565 | None:intergenic | 35.0% | |
| TGTATGAAGTTTGAGTGTGT+GGG | + | chr6_1:6257595-6257614 | Msa0871350:intron | 35.0% | |
| !! | CTCTTTAAGATGTACTTGGA+TGG | - | chr6_1:6257676-6257695 | None:intergenic | 35.0% |
| !! | CCATCTCTTTAAGATGTACT+TGG | - | chr6_1:6257680-6257699 | None:intergenic | 35.0% |
| CCAAGTACATCTTAAAGAGA+TGG | + | chr6_1:6257677-6257696 | Msa0871350:intron | 35.0% | |
| AAAAAATGGCATCCATGTGT+GGG | - | chr6_1:6257785-6257804 | None:intergenic | 35.0% | |
| TTACTTCCTGGAAAACATCA+AGG | + | chr6_1:6257841-6257860 | Msa0871350:CDS | 35.0% | |
| AACATCAAGGTTGAGAGAAA+AGG | + | chr6_1:6257854-6257873 | Msa0871350:CDS | 35.0% | |
| TGCTAGCGTCAATACGAAAT+TGG | - | chr6_1:6255584-6255603 | None:intergenic | 40.0% | |
| TAGGACGAAAACCTTGTCTA+TGG | - | chr6_1:6255839-6255858 | None:intergenic | 40.0% | |
| ! | CAAGGTTTTCGTCCTAACAA+AGG | + | chr6_1:6255843-6255862 | Msa0871350:CDS | 40.0% |
| GGATTTGTATGGCCTTTGTT+AGG | - | chr6_1:6255858-6255877 | None:intergenic | 40.0% | |
| ! | ACTATTTCTCGTCAGCCAAA+TGG | + | chr6_1:6255924-6255943 | Msa0871350:CDS | 40.0% |
| ! | TTGGATGGAGTACCAAAACT+GGG | + | chr6_1:6256080-6256099 | Msa0871350:intron | 40.0% |
| ! | TCAAATCCCATTCCCAGTTT+TGG | - | chr6_1:6256095-6256114 | None:intergenic | 40.0% |
| ACTGGGAATGGGATTTGATT+CGG | + | chr6_1:6256097-6256116 | Msa0871350:intron | 40.0% | |
| AGATTTACTTGCTTCAGGGA+AGG | + | chr6_1:6256227-6256246 | Msa0871350:intron | 40.0% | |
| GCAGAAAGAGAAACGAGATA+CGG | + | chr6_1:6256256-6256275 | Msa0871350:intron | 40.0% | |
| ATACGGATGTAAAGAGACCT+CGG | + | chr6_1:6256273-6256292 | Msa0871350:intron | 40.0% | |
| ! | ATTATTTCTCGTCAGCCTGA+TGG | + | chr6_1:6256329-6256348 | Msa0871350:intron | 40.0% |
| GAAGACAACATTGTCGATGA+AGG | + | chr6_1:6256458-6256477 | Msa0871350:intron | 40.0% | |
| ! | CGATGAAGGTTTTCATGATC+TGG | + | chr6_1:6256472-6256491 | Msa0871350:intron | 40.0% |
| ACGCACAAGAGAAATACAAG+AGG | + | chr6_1:6256535-6256554 | Msa0871350:intron | 40.0% | |
| ATACCAAGAAATGGAGCGAA+TGG | - | chr6_1:6256758-6256777 | None:intergenic | 40.0% | |
| ! | GTTTTTATCGAGGCTATGTC+TGG | + | chr6_1:6256860-6256879 | Msa0871350:intron | 40.0% |
| TCTTAGGATTGTCTTTGGCT+TGG | - | chr6_1:6256888-6256907 | None:intergenic | 40.0% | |
| CATATGAGTCAGTTGCTTGA+GGG | - | chr6_1:6256999-6257018 | None:intergenic | 40.0% | |
| ACATATGAGTCAGTTGCTTG+AGG | - | chr6_1:6257000-6257019 | None:intergenic | 40.0% | |
| !!! | CAGCTGCTTTTTTAACCATG+AGG | + | chr6_1:6257054-6257073 | Msa0871350:intron | 40.0% |
| CAAAATCCTCTTCTTCCTCA+TGG | - | chr6_1:6257072-6257091 | None:intergenic | 40.0% | |
| ! | TAATGCATGGAGTACTCTCA+TGG | + | chr6_1:6257093-6257112 | Msa0871350:CDS | 40.0% |
| TATACGAAAGCAGAGACCAA+TGG | + | chr6_1:6257155-6257174 | Msa0871350:CDS | 40.0% | |
| ATACGAAAGCAGAGACCAAT+GGG | + | chr6_1:6257156-6257175 | Msa0871350:CDS | 40.0% | |
| AAGCACGTAAAGAATGACTC+AGG | + | chr6_1:6257259-6257278 | Msa0871350:CDS | 40.0% | |
| CTTCCATTTCTCAAGCATCT+TGG | + | chr6_1:6257286-6257305 | Msa0871350:CDS | 40.0% | |
| TTCCCAAGATGCTTGAGAAA+TGG | - | chr6_1:6257292-6257311 | None:intergenic | 40.0% | |
| AGCATGTCTAAATCTAGTGC+TGG | + | chr6_1:6257462-6257481 | Msa0871350:CDS | 40.0% | |
| CTGTATGAAGTTTGAGTGTG+TGG | + | chr6_1:6257594-6257613 | Msa0871350:intron | 40.0% | |
| CAAAAAATGGCATCCATGTG+TGG | - | chr6_1:6257786-6257805 | None:intergenic | 40.0% | |
| ! | TAAGGCAGCATTTTACTTCC+TGG | + | chr6_1:6257829-6257848 | Msa0871350:intron | 40.0% |
| ! | TCTCAACCTTGATGTTTTCC+AGG | - | chr6_1:6257850-6257869 | None:intergenic | 40.0% |
| AGTGCAAATGCTCATCCTGT+TGG | + | chr6_1:6255501-6255520 | Msa0871350:CDS | 45.0% | |
| ! | TTTCGTATTGACGCTAGCAG+AGG | + | chr6_1:6255585-6255604 | Msa0871350:CDS | 45.0% |
| TCTGCTATAGAGGTAGCATC+GGG | - | chr6_1:6255627-6255646 | None:intergenic | 45.0% | |
| CTCTGCTATAGAGGTAGCAT+CGG | - | chr6_1:6255628-6255647 | None:intergenic | 45.0% | |
| AGTAACGGTCTCTGCTATAG+AGG | - | chr6_1:6255637-6255656 | None:intergenic | 45.0% | |
| TCTATGGCAGGTGAATCTTC+GGG | - | chr6_1:6255823-6255842 | None:intergenic | 45.0% | |
| GTCTATGGCAGGTGAATCTT+CGG | - | chr6_1:6255824-6255843 | None:intergenic | 45.0% | |
| AGATTCACCTGCCATAGACA+AGG | + | chr6_1:6255825-6255844 | Msa0871350:CDS | 45.0% | |
| ACGAAAACCTTGTCTATGGC+AGG | - | chr6_1:6255835-6255854 | None:intergenic | 45.0% | |
| AGTCAAATGTGCCAAGCAAC+CGG | - | chr6_1:6255907-6255926 | None:intergenic | 45.0% | |
| GTGACACGAAACTTGCCATT+TGG | - | chr6_1:6255942-6255961 | None:intergenic | 45.0% | |
| GGCAGCATATGAGCATTACA+CGG | - | chr6_1:6256002-6256021 | None:intergenic | 45.0% | |
| ! | TTTTGGTACTCCATCCAACG+TGG | - | chr6_1:6256078-6256097 | None:intergenic | 45.0% |
| ! | GTTGGATGGAGTACCAAAAC+TGG | + | chr6_1:6256079-6256098 | Msa0871350:intron | 45.0% |
| ! | TGGAGTACCAAAACTGGGAA+TGG | + | chr6_1:6256085-6256104 | Msa0871350:intron | 45.0% |
| ! | GGAGTACCAAAACTGGGAAT+GGG | + | chr6_1:6256086-6256105 | Msa0871350:intron | 45.0% |
| AATGCATATGCTGCACAGGT+AGG | + | chr6_1:6256143-6256162 | Msa0871350:intron | 45.0% | |
| ! | CTTGCTTCAGGGAAGGTTTT+CGG | + | chr6_1:6256234-6256253 | Msa0871350:intron | 45.0% |
| CCAATTCTAGTATCCTTCCG+AGG | - | chr6_1:6256293-6256312 | None:intergenic | 45.0% | |
| CCTCGGAAGGATACTAGAAT+TGG | + | chr6_1:6256290-6256309 | Msa0871350:intron | 45.0% | |
| GTTACATGATACCTGCCATC+AGG | - | chr6_1:6256347-6256366 | None:intergenic | 45.0% | |
| AAGAAATGGAGCGAATGGTC+GGG | - | chr6_1:6256753-6256772 | None:intergenic | 45.0% | |
| CAAGAAATGGAGCGAATGGT+CGG | - | chr6_1:6256754-6256773 | None:intergenic | 45.0% | |
| !!! | TCAGTTGCTTGAGGGCATTT+TGG | - | chr6_1:6256991-6257010 | None:intergenic | 45.0% |
| TTTCGTATGCTATGGCCCAT+TGG | - | chr6_1:6257174-6257193 | None:intergenic | 45.0% | |
| TCTCAAGCATCTTGGGAAGA+TGG | + | chr6_1:6257294-6257313 | Msa0871350:CDS | 45.0% | |
| TTGGGAAGATGGTGACTGAT+TGG | + | chr6_1:6257305-6257324 | Msa0871350:CDS | 45.0% | |
| AATTAACCAAGGCCCACACA+TGG | + | chr6_1:6257770-6257789 | Msa0871350:intron | 45.0% | |
| TCTGCAGCACAGGAATCCTT+CGG | - | chr6_1:6255444-6255463 | None:intergenic | 50.0% | |
| CACTTTACTGTCTGCAGCAC+AGG | - | chr6_1:6255454-6255473 | None:intergenic | 50.0% | |
| !! | TCCTGTTGGCCTTACTCAGA+TGG | + | chr6_1:6255515-6255534 | Msa0871350:CDS | 50.0% |
| TCCATCTGAGTAAGGCCAAC+AGG | - | chr6_1:6255519-6255538 | None:intergenic | 50.0% | |
| !! | GCATCGGGGTTTTGACACAT+CGG | - | chr6_1:6255612-6255631 | None:intergenic | 50.0% |
| CTGCTATAGAGGTAGCATCG+GGG | - | chr6_1:6255626-6255645 | None:intergenic | 50.0% | |
| TGTGGCGCCAAATATTGGCA+TGG | + | chr6_1:6255683-6255702 | Msa0871350:CDS | 50.0% | |
| GGAAACAAGAACCGGTTGCT+TGG | + | chr6_1:6255893-6255912 | Msa0871350:CDS | 50.0% | |
| GAACATAACCGAGTCCACGT+TGG | + | chr6_1:6256061-6256080 | Msa0871350:intron | 50.0% | |
| ATAACCGAGTCCACGTTGGA+TGG | + | chr6_1:6256065-6256084 | Msa0871350:intron | 50.0% | |
| TACTCCATCCAACGTGGACT+CGG | - | chr6_1:6256072-6256091 | None:intergenic | 50.0% | |
| !! | GGGAATGGGATTTGATTCGG+AGG | + | chr6_1:6256100-6256119 | Msa0871350:intron | 50.0% |
| GGATGTAAAGAGACCTCGGA+AGG | + | chr6_1:6256277-6256296 | Msa0871350:intron | 50.0% | |
| CGACCATTCGCTCCATTTCT+TGG | + | chr6_1:6256752-6256771 | Msa0871350:intron | 50.0% | |
| TGCAAGCAAGCTTGCCATGT+CGG | - | chr6_1:6257212-6257231 | None:intergenic | 50.0% | |
| GGTGACTGATTGGCACTACA+AGG | + | chr6_1:6257315-6257334 | Msa0871350:CDS | 50.0% | |
| ATGATATCGCCCATTAGGGC+TGG | - | chr6_1:6257376-6257395 | None:intergenic | 50.0% | |
| GCAGGAGAATCAATGCCCGA+AGG | + | chr6_1:6255425-6255444 | Msa0871350:CDS | 55.0% | |
| CTGCAGCACAGGAATCCTTC+GGG | - | chr6_1:6255443-6255462 | None:intergenic | 55.0% | |
| TTTCTCGTCAGCCTGATGGC+AGG | + | chr6_1:6256333-6256352 | Msa0871350:intron | 55.0% | |
| ! | CCATTAGGGCTGGCATATGC+CGG | - | chr6_1:6257366-6257385 | None:intergenic | 55.0% |
| CGGCATATGCCAGCCCTAAT+GGG | + | chr6_1:6257364-6257383 | Msa0871350:CDS | 55.0% | |
| !! | CTGGAGCATTGCAGTGAGAG+TGG | + | chr6_1:6257481-6257500 | Msa0871350:CDS | 55.0% |
| CCGGCATATGCCAGCCCTAA+TGG | + | chr6_1:6257363-6257382 | Msa0871350:CDS | 60.0% | |
| TGGCATCCATGTGTGGGCCT+TGG | - | chr6_1:6257779-6257798 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6255420 | 6257880 | 6255420 | ID=Msa0871350;Name=Msa0871350 |
| chr6_1 | mRNA | 6255420 | 6257880 | 6255420 | ID=Msa0871350-mRNA-1;Parent=Msa0871350;Name=Msa0871350-mRNA-1;_AED=0.46;_eAED=0.62;_QI=0|0|0|0.33|1|1|3|0|364 |
| chr6_1 | exon | 6255420 | 6256000 | 6255420 | ID=Msa0871350-mRNA-1:exon:1874;Parent=Msa0871350-mRNA-1 |
| chr6_1 | exon | 6257057 | 6257522 | 6257057 | ID=Msa0871350-mRNA-1:exon:1875;Parent=Msa0871350-mRNA-1 |
| chr6_1 | exon | 6257833 | 6257880 | 6257833 | ID=Msa0871350-mRNA-1:exon:1876;Parent=Msa0871350-mRNA-1 |
| chr6_1 | CDS | 6255420 | 6256000 | 6255420 | ID=Msa0871350-mRNA-1:cds;Parent=Msa0871350-mRNA-1 |
| chr6_1 | CDS | 6257057 | 6257522 | 6257057 | ID=Msa0871350-mRNA-1:cds;Parent=Msa0871350-mRNA-1 |
| chr6_1 | CDS | 6257833 | 6257880 | 6257833 | ID=Msa0871350-mRNA-1:cds;Parent=Msa0871350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
