AlfalfaGEDB | Msa0871370

M. sativa cultivar zhongmu-4 / Msa0871370

KEGG: K14400
GO: GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243
PFAM: PF04818.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871370	XP_013450939.1	97.738	840	19	0	1	840	1	840	0.0	1693

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871370	sp\|Q0WPF2\|PCFS4_ARATH	45.915	869	359	22	1	840	22	808	0.0	637

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871370	A0A072U797	97.738	840	19	0	1	840	1	840	0.0	1693

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TFs/TRs:

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Gene ID	Type	Classification
Msa0871370	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871370	MtrunA17_Chr6g0452881	97.738	840	19	0	1	840	1	840	0.0	1693
Msa0871370	MtrunA17_Chr6g0452891	73.469	245	37	3	569	813	1	217	8.97e-119	358
Msa0871370	MtrunA17_Chr4g0037071	89.796	196	20	0	631	826	1	196	2.56e-113	345
Msa0871370	MtrunA17_Chr4g0037081	77.976	168	34	1	295	462	15	179	2.47e-80	256
Msa0871370	MtrunA17_Chr7g0265781	37.978	366	172	11	37	388	78	402	3.84e-60	221
Msa0871370	MtrunA17_Chr7g0265781	36.782	174	106	3	645	816	847	1018	9.75e-33	136
Msa0871370	MtrunA17_Chr1g0179281	37.534	365	186	11	40	394	80	412	6.53e-57	211
Msa0871370	MtrunA17_Chr1g0179281	35.632	174	106	4	645	814	838	1009	7.17e-31	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871370	AT4G04885.1	45.915	869	359	22	1	840	22	808	0.0	637
Msa0871370	AT2G36480.2	35.754	358	180	10	41	379	88	414	5.84e-50	191
Msa0871370	AT2G36480.2	33.140	172	106	3	645	816	785	947	2.07e-25	113
Msa0871370	AT2G36480.1	35.754	358	180	10	41	379	88	414	5.84e-50	191
Msa0871370	AT2G36480.1	33.140	172	106	3	645	816	785	947	2.07e-25	113
Msa0871370	AT1G66500.1	34.959	369	159	16	495	821	67	396	8.24e-49	179
Msa0871370	AT5G43620.1	45.355	183	79	4	648	821	220	390	7.07e-46	170

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Find 251 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGAAGATGAAGAGT+TGG	0.422834	6_1:-6262350	Msa0871370:CDS
AAAGCTGCAGGCAAAACTGT+TGG	0.529877	6_1:+6263390	None:intergenic
AAATATTCATCCATATATGA+GGG	0.620513	6_1:+6263915	None:intergenic
AAATTAGAATATCCAACAGT+TGG	0.545058	6_1:+6262829	None:intergenic
AACAATCTCATTGCTCATGG+TGG	0.529348	6_1:+6267239	None:intergenic
AACAGGTCGTACATTTGGCA+GGG	0.583155	6_1:+6263002	None:intergenic
AACGTCGTGAAGAAGATCCT+AGG	0.595573	6_1:-6267164	Msa0871370:CDS
AAGAGTTGTTTCCGATTCTT+TGG	0.278868	6_1:+6262959	None:intergenic
AAGATCTTCCAACCCTACTT+GGG	0.576601	6_1:+6263973	None:intergenic
AAGCCTTGAATCGACCAACG+AGG	0.765396	6_1:+6267196	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAAATTGAGAGAGAAATT+AGG	+	chr6_1:6261202-6261221	None:intergenic	30.0%
ATAGTAAGATCAGTGATGAT+AGG	+	chr6_1:6261424-6261443	None:intergenic	30.0%
TTAAACCAATTAGTAGCATC+TGG	-	chr6_1:6261808-6261827	Msa0871370:intron	30.0%
TAAACCAATTAGTAGCATCT+GGG	-	chr6_1:6261809-6261828	Msa0871370:intron	30.0%
TGAATGATGTTGTCAAATAC+CGG	-	chr6_1:6261859-6261878	Msa0871370:intron	30.0%
ATTCCTATTATATCCACCAT+AGG	+	chr6_1:6262205-6262224	None:intergenic	30.0%
GACAAACATTTCATCTGAAA+AGG	-	chr6_1:6262333-6262352	Msa0871370:CDS	30.0%
GAAATAAACGAGAATGAACA+AGG	-	chr6_1:6262502-6262521	Msa0871370:CDS	30.0%
ACTTGCTTGGAGTAAATATT+AGG	-	chr6_1:6262586-6262605	Msa0871370:CDS	30.0%
TTTAGACAAGCTGTTAACTA+AGG	-	chr6_1:6262725-6262744	Msa0871370:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	6261059	6267444	6261059	ID=Msa0871370;Name=Msa0871370
chr6_1	mRNA	6261059	6267444	6261059	ID=Msa0871370-mRNA-1;Parent=Msa0871370;Name=Msa0871370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=188\|1\|1\|1\|1\|1\|6\|392\|840
chr6_1	exon	6261059	6261495	6261059	ID=Msa0871370-mRNA-1:exon:1882;Parent=Msa0871370-mRNA-1
chr6_1	exon	6262126	6262668	6262126	ID=Msa0871370-mRNA-1:exon:1881;Parent=Msa0871370-mRNA-1
chr6_1	exon	6262771	6264078	6262771	ID=Msa0871370-mRNA-1:exon:1880;Parent=Msa0871370-mRNA-1
chr6_1	exon	6264509	6264769	6264509	ID=Msa0871370-mRNA-1:exon:1879;Parent=Msa0871370-mRNA-1
chr6_1	exon	6264848	6264949	6264848	ID=Msa0871370-mRNA-1:exon:1878;Parent=Msa0871370-mRNA-1
chr6_1	exon	6266993	6267444	6266993	ID=Msa0871370-mRNA-1:exon:1877;Parent=Msa0871370-mRNA-1
chr6_1	five_prime_UTR	6267257	6267444	6267257	ID=Msa0871370-mRNA-1:five_prime_utr;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6266993	6267256	6266993	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6264848	6264949	6264848	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6264509	6264769	6264509	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6262771	6264078	6262771	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6262126	6262668	6262126	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	CDS	6261451	6261495	6261451	ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1	three_prime_UTR	6261059	6261450	6261059	ID=Msa0871370-mRNA-1:three_prime_utr;Parent=Msa0871370-mRNA-1

Gene Sequence

>Msa0871370

ATGAGCAATGAGATTGTTCAGAAACCTCCACCATCAATCCTCGTTGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTAGGTTGAGAAATTCGCAACCTTCAACGGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTACCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCTACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCTTCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCCACTGGTAGGACAGTTGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAAGAGGAGTTCGATTGGGAAGATATGAGTCCGACAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATTGGTTTCTCATCAGAAAAGCCTGCTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCAACAGTTTTGCCTGCAGCTTTTGAAATGAGGCATTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATCAATAGACCTTTTCCTGTGCATGAACAACCGCAGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCATCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCATGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGAGGAGCTTTGCGACCTTTACCTCCACCTGGCCTACACGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTTATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGACACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTCTGAAGATTTTGTGATGGACGAAGGGGGCACCTATGACGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA

Protein sequence

>Msa0871370

MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEELSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPATVAANATSSVSRVFPGLNSNIEYRPTVLPAAFEMRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEQPQHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPASSQFTYRPSLPGHGHAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGLHAPSQMPPHPNPSPFVPSQQPTVGYSNLINSLMAQGVISLANQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPIIHAKCRSESTPSEDFVMDEGGTYDEGSQRKRMRS*