AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871370 MtrunA17_Chr6g0452881 97.738 840 19 0 1 840 1 840 0.0 1693
Msa0871370 MtrunA17_Chr6g0452891 73.469 245 37 3 569 813 1 217 8.97e-119 358
Msa0871370 MtrunA17_Chr4g0037071 89.796 196 20 0 631 826 1 196 2.56e-113 345
Msa0871370 MtrunA17_Chr4g0037081 77.976 168 34 1 295 462 15 179 2.47e-80 256
Msa0871370 MtrunA17_Chr7g0265781 37.978 366 172 11 37 388 78 402 3.84e-60 221
Msa0871370 MtrunA17_Chr7g0265781 36.782 174 106 3 645 816 847 1018 9.75e-33 136
Msa0871370 MtrunA17_Chr1g0179281 37.534 365 186 11 40 394 80 412 6.53e-57 211
Msa0871370 MtrunA17_Chr1g0179281 35.632 174 106 4 645 814 838 1009 7.17e-31 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871370 AT4G04885.1 45.915 869 359 22 1 840 22 808 0.0 637
Msa0871370 AT2G36480.2 35.754 358 180 10 41 379 88 414 5.84e-50 191
Msa0871370 AT2G36480.2 33.140 172 106 3 645 816 785 947 2.07e-25 113
Msa0871370 AT2G36480.1 35.754 358 180 10 41 379 88 414 5.84e-50 191
Msa0871370 AT2G36480.1 33.140 172 106 3 645 816 785 947 2.07e-25 113
Msa0871370 AT1G66500.1 34.959 369 159 16 495 821 67 396 8.24e-49 179
Msa0871370 AT5G43620.1 45.355 183 79 4 648 821 220 390 7.07e-46 170

Find 251 sgRNAs with CRISPR-Local

Find 465 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTATGGCCTAGTTAA+AGG 0.199059 6_1:-6263840 Msa0871370:CDS
GGAAAATTGAGAGAGAAATT+AGG 0.204170 6_1:+6267282 None:intergenic
CACATAATGCACATGTATTT+TGG 0.204278 6_1:+6262308 None:intergenic
CATCGTCACAATTTACTTAT+AGG 0.228217 6_1:-6263062 Msa0871370:CDS
TCTATTTGTCTTACGTATCT+TGG 0.237116 6_1:+6264534 None:intergenic
CATCAATGCACCATTTATAT+TGG 0.241138 6_1:+6261080 None:intergenic
AAGAGTTGTTTCCGATTCTT+TGG 0.278868 6_1:+6262959 None:intergenic
TAATTTGATTAATTCACTTA+TGG 0.281069 6_1:-6262812 Msa0871370:CDS
CCCCATCATGCTGTTGATTA+TGG 0.284990 6_1:-6263852 Msa0871370:CDS
AGCAGAAGCCCTCTCGTAAA+TGG 0.298225 6_1:-6262462 Msa0871370:CDS
TCAGTGTCAAGGGTGTTTCC+TGG 0.301890 6_1:-6263438 Msa0871370:CDS
GCTTACTGCCAGAAGTTTCT+TGG 0.305569 6_1:+6263661 None:intergenic
CCTATACATGTACATAATTT+AGG 0.307610 6_1:+6261320 None:intergenic
CCTGATGGTTGATTATTAAC+TGG 0.309564 6_1:+6264615 None:intergenic
TAGGCATATGCCCTCATATA+TGG 0.310130 6_1:-6263925 Msa0871370:CDS
GAAAATTGAGAGAGAAATTA+GGG 0.313585 6_1:+6267283 None:intergenic
ATGCCTGTTGTTATTCCATT+AGG 0.320007 6_1:+6262211 None:intergenic
GGGGTGTGAAATTGAGAAAT+TGG 0.329039 6_1:+6267260 None:intergenic
GATTGGGATGAGGTGGCATC+TGG 0.331410 6_1:+6262878 None:intergenic
GATTCGAATGGATTCCTAAC+AGG 0.333615 6_1:+6263294 None:intergenic
CTGCATTTAGCATGAATAAT+GGG 0.336904 6_1:+6262169 None:intergenic
TGGGATGGAGCAGTAATTAC+TGG 0.337629 6_1:-6261171 Msa0871370:three_prime_UTR
AGATGAAGAGTTGGCTGTTC+CGG 0.339955 6_1:-6262341 Msa0871370:CDS
TGAACAATTTCTTCCGTTGA+AGG 0.350956 6_1:+6267126 None:intergenic
CCACTGTAACTTATGAGTTT+CGG 0.352733 6_1:-6261408 Msa0871370:three_prime_UTR
TCTAGGAAGATTACCGTATA+AGG 0.356434 6_1:+6262582 None:intergenic
TCTGCTATGCGACATCTCTT+TGG 0.357635 6_1:-6264705 Msa0871370:CDS
TCTTTGACTGCCTTCGTCAT+AGG 0.357947 6_1:+6261469 None:intergenic
TTATTCCATTAGGCGCATTA+AGG 0.358655 6_1:+6262221 None:intergenic
GGTTTCCTGCAACCAACTAT+TGG 0.360158 6_1:-6263507 Msa0871370:CDS
TTGAGAGAGAAATTAGGGTT+AGG 0.360280 6_1:+6267288 None:intergenic
CCTAAATTATGTACATGTAT+AGG 0.366794 6_1:-6261320 Msa0871370:three_prime_UTR
TATGGCCTAGTTAAAGGATT+AGG 0.367937 6_1:-6263834 Msa0871370:CDS
TCTGCATTTAGCATGAATAA+TGG 0.369592 6_1:+6262168 None:intergenic
TGCCTATCAAGTCCAATTCT+TGG 0.377024 6_1:+6263942 None:intergenic
CTATTTGTCTTACGTATCTT+GGG 0.379077 6_1:+6264535 None:intergenic
TGAGAGAGAAATTAGGGTTA+GGG 0.380815 6_1:+6267289 None:intergenic
GTTTCATCCTCACAGGTTGC+AGG 0.381654 6_1:-6264071 Msa0871370:intron
TACGAGAGGGCTTCTGCTTA+CGG 0.385096 6_1:+6262467 None:intergenic
GTAAGGAACTGAAAATTTGC+AGG 0.385387 6_1:+6261247 None:intergenic
TAGGCATCAATTAGTGCTCT+TGG 0.388516 6_1:+6263699 None:intergenic
ATGACTCACAATGGTACTAT+TGG 0.398029 6_1:+6263263 None:intergenic
AGAAACCAATAGTTGGTTGC+AGG 0.398885 6_1:+6263502 None:intergenic
TCTTCGTCACCACCAAGAAT+TGG 0.400029 6_1:-6263954 Msa0871370:CDS
GGCTGTTGGCTTGGTACAAA+TGG 0.400747 6_1:+6262850 None:intergenic
GGCATAACAGGTCGTACATT+TGG 0.402384 6_1:+6262997 None:intergenic
CAGCTACCTAATCAGCTTCC+TGG 0.402588 6_1:-6263156 Msa0871370:CDS
TCTGCAATCAGTGCCTTATA+CGG 0.402883 6_1:-6262595 Msa0871370:CDS
ACGTGGAGCATGCACATTTA+CGG 0.404948 6_1:+6263353 None:intergenic
GCTGATTAGGTAGCTGATAC+AGG 0.407419 6_1:+6263163 None:intergenic
GTGACTGCTGTGCTCGTCTT+GGG 0.407489 6_1:+6262528 None:intergenic
CGATTCTTTGGCCTGGCAAA+GGG 0.408289 6_1:+6262971 None:intergenic
CGCATAGCAGAATGTAAACT+TGG 0.411538 6_1:+6264717 None:intergenic
ATTGTTGTATCCAATATAAA+TGG 0.413298 6_1:-6261090 Msa0871370:three_prime_UTR
TAAATATTCATCCATATATG+AGG 0.415257 6_1:+6263914 None:intergenic
GACAAAAGCCAAGAAACTTC+TGG 0.416293 6_1:-6263669 Msa0871370:CDS
GAAGATCTTCCAACCCTACT+TGG 0.416371 6_1:+6263972 None:intergenic
GGCAAAGGGAGTGGCATAAC+AGG 0.420754 6_1:+6262985 None:intergenic
GACGGTGTTTGTACACTGTT+TGG 0.421276 6_1:+6263114 None:intergenic
AAAGAAAGAAGATGAAGAGT+TGG 0.422834 6_1:-6262350 Msa0871370:CDS
AGAAGTATCGAACATATTCC+TGG 0.424947 6_1:+6264865 None:intergenic
TGTGACTGCTGTGCTCGTCT+TGG 0.427292 6_1:+6262527 None:intergenic
GGATTCTTCGATGGAAATAT+AGG 0.431337 6_1:+6263315 None:intergenic
CTTAGTGGTGCAGAGGCATT+GGG 0.433928 6_1:-6262418 Msa0871370:CDS
GACGTGGTTGTCCGTTACTA+AGG 0.434804 6_1:+6263727 None:intergenic
ATCAGACCAGGAAGCTGATT+AGG 0.435569 6_1:+6263150 None:intergenic
GTATACCTTAATGCGCCTAA+TGG 0.441302 6_1:-6262226 Msa0871370:CDS
GCATTGGCTGCAACAGTAGC+AGG 0.444681 6_1:+6263468 None:intergenic
CCGATTCTTTGGCCTGGCAA+AGG 0.444884 6_1:+6262970 None:intergenic
CATCAGGCGTTAATTCCCTT+AGG 0.446704 6_1:-6264599 Msa0871370:CDS
AATCCTCGTTGGTCGATTCA+AGG 0.447934 6_1:-6267199 Msa0871370:CDS
TGACGAACCTTCAGAGTGTC+TGG 0.448661 6_1:+6262622 None:intergenic
GCCATAATCAACAGCATGAT+GGG 0.449248 6_1:+6263851 None:intergenic
GCTTAGTGGTGCAGAGGCAT+TGG 0.449928 6_1:-6262419 Msa0871370:CDS
ACTGTTGGAAATGCAAATTT+CGG 0.451845 6_1:-6264026 Msa0871370:CDS
AATCGACCAACGAGGATTGA+TGG 0.453327 6_1:+6267204 None:intergenic
TATAGTTTATTGCAGTCAAA+AGG 0.456065 6_1:-6261280 Msa0871370:three_prime_UTR
GCTCGTCTTGGGATTTGAAT+CGG 0.457134 6_1:+6262539 None:intergenic
GCCTTTGTTAGTTGAGCGGC+TGG 0.457470 6_1:-6263640 Msa0871370:CDS
AGCCAATGAGATTACACCTT+GGG 0.459714 6_1:+6262789 None:intergenic
TGGAAATATAGGAGTTATGC+TGG 0.461860 6_1:+6263326 None:intergenic
TAACAGGTCGTACATTTGGC+AGG 0.462054 6_1:+6263001 None:intergenic
TCTTCCCTCCTTCTGTCTTA+CGG 0.462978 6_1:-6264668 Msa0871370:CDS
TTGGGAGCCGAATCAGCTCC+AGG 0.463136 6_1:-6262400 Msa0871370:CDS
TTCCATCGAAGAATCCTGTT+AGG 0.463431 6_1:-6263308 Msa0871370:CDS
GGGTGTGAAATTGAGAAATT+GGG 0.466361 6_1:+6267261 None:intergenic
CCAACAGTTGGCTGTTGGCT+TGG 0.468279 6_1:+6262841 None:intergenic
GTTATGCCACTCCCTTTGCC+AGG 0.474289 6_1:-6262982 Msa0871370:CDS
CTTTGGCCTGGCAAAGGGAG+TGG 0.476898 6_1:+6262976 None:intergenic
CTCTACCTAATCCTTTAACT+AGG 0.477129 6_1:+6263829 None:intergenic
TGGTACAAATGGACTAGGAT+TGG 0.478050 6_1:+6262861 None:intergenic
GGTGAAAGGTTAGACTCAAC+AGG 0.478337 6_1:-6264050 Msa0871370:CDS
TTGGCATTTATTGATTCGAA+TGG 0.478491 6_1:+6263282 None:intergenic
ACTTATAGGCCATCTTTGCC+AGG 0.479835 6_1:-6263048 Msa0871370:CDS
CCAGTTAATAATCAACCATC+AGG 0.481608 6_1:-6264615 Msa0871370:CDS
GGTTGTTCATGCACAGGAAA+AGG 0.482614 6_1:+6263225 None:intergenic
TCTGATGAGAAACCAATAGT+TGG 0.483041 6_1:+6263495 None:intergenic
CTGAAGAAGAGGAGTTCGAT+TGG 0.483295 6_1:-6263572 Msa0871370:CDS
TAAGTAAATTGTGACGATGC+TGG 0.483338 6_1:+6263066 None:intergenic
ATCAGGCGTTAATTCCCTTA+GGG 0.483589 6_1:-6264598 Msa0871370:CDS
GGCCCAAGGTGTAATCTCAT+TGG 0.483897 6_1:-6262791 Msa0871370:CDS
GCTACCTTCACTCTATCTCT+TGG 0.484585 6_1:-6264910 Msa0871370:CDS
GAGAAATTCGCAACCTTCAA+CGG 0.486784 6_1:-6267139 Msa0871370:CDS
CTGAACAATCTCATTGCTCA+TGG 0.488976 6_1:+6267236 None:intergenic
GAATCTCCTCGACCTACTCA+TGG 0.489388 6_1:-6264570 Msa0871370:CDS
GGCATAGACAGGTCGCAGTT+AGG 0.489584 6_1:-6262193 Msa0871370:CDS
GGATAGAAATGGTATGGATA+AGG 0.494929 6_1:-6263619 Msa0871370:CDS
CAACATCGTAATCATGCTAA+AGG 0.497052 6_1:-6267027 Msa0871370:CDS
GCGCCTAATGGAATAACAAC+AGG 0.497466 6_1:-6262214 Msa0871370:CDS
TATTGTGAAGAATGTTGGCC+AGG 0.499257 6_1:-6264883 Msa0871370:CDS
TTAGACTCAACAGGAACTGT+TGG 0.499630 6_1:-6264041 Msa0871370:CDS
ATAGTAAGATCAGTGATGAT+AGG 0.500445 6_1:+6267060 None:intergenic
GGTACAAATGGACTAGGATT+GGG 0.500633 6_1:+6262862 None:intergenic
TGTAGGCCAGGTGGAGGTAA+AGG 0.501114 6_1:+6262910 None:intergenic
GGCCATAATCAACAGCATGA+TGG 0.502882 6_1:+6263850 None:intergenic
ACGGAGGAGTGGATGTATAG+AGG 0.502902 6_1:-6262253 Msa0871370:CDS
TGAATTCTTCAATTGTTCAA+AGG 0.503051 6_1:+6267380 None:intergenic
CCACAAGTTGTGCACTGTCT+AGG 0.505428 6_1:+6262565 None:intergenic
TCACTGTAAAACTCCTCAAA+AGG 0.506831 6_1:+6262280 None:intergenic
GGATGAGGTGGCATCTGGGA+TGG 0.507178 6_1:+6262883 None:intergenic
TGACCATGTCCTGGCAAAGA+TGG 0.508872 6_1:+6263039 None:intergenic
TGCGACATCTCTTTGGTACC+TGG 0.510544 6_1:-6264698 Msa0871370:CDS
CACCAAGAATTGGACTTGAT+AGG 0.511974 6_1:-6263944 Msa0871370:CDS
TAATCAATTTGTCCCAAGTA+GGG 0.514638 6_1:-6263985 Msa0871370:CDS
CCTTTGCCAGGCCAAAGAAT+CGG 0.515014 6_1:-6262970 Msa0871370:CDS
TGGGATGGAGCGTGTAGGCC+AGG 0.515113 6_1:+6262898 None:intergenic
GGATCCTTTGTAAATGCTCA+TGG 0.515592 6_1:+6261132 None:intergenic
CAATTTGTCCCAAGTAGGGT+TGG 0.520932 6_1:-6263981 Msa0871370:CDS
GGAGTTATGCTGGGAGGACG+TGG 0.523802 6_1:+6263336 None:intergenic
ATTCAAACAGTAAATGCTCA+TGG 0.523956 6_1:+6261111 None:intergenic
TTGTTTCCGATTCTTTGGCC+TGG 0.524049 6_1:+6262964 None:intergenic
GTGTTTGTACACTGTTTGGC+GGG 0.527616 6_1:+6263118 None:intergenic
TGAAGAAGAGGAGTTCGATT+GGG 0.528053 6_1:-6263571 Msa0871370:CDS
TGCCTCATTTCAAAAGCTGC+AGG 0.528790 6_1:+6263378 None:intergenic
AGAGCACTAATTGATGCCTA+TGG 0.528940 6_1:-6263696 Msa0871370:CDS
CAAAATACATGTGCATTATG+TGG 0.529245 6_1:-6262307 Msa0871370:CDS
AACAATCTCATTGCTCATGG+TGG 0.529348 6_1:+6267239 None:intergenic
AAAGCTGCAGGCAAAACTGT+TGG 0.529877 6_1:+6263390 None:intergenic
AGGCCATCTTTGCCAGGACA+TGG 0.529945 6_1:-6263042 Msa0871370:CDS
TTCCGACTATCACCAGAAAA+CGG 0.530968 6_1:+6263777 None:intergenic
GTTGAGCGGCTGGATAGAAA+TGG 0.532637 6_1:-6263630 Msa0871370:CDS
TAGATTTAGTTACCTGTGAA+GGG 0.535484 6_1:+6262758 None:intergenic
ACAATCTCATTGCTCATGGT+GGG 0.535495 6_1:+6267240 None:intergenic
AAGGTCGCAAAGCTCCTCCC+TGG 0.535607 6_1:+6262929 None:intergenic
ATTAATTCACTTATGGCCCA+AGG 0.541882 6_1:-6262805 Msa0871370:CDS
CCATCACAAAATCTTCAGAC+GGG 0.543390 6_1:+6262134 None:intergenic
GAGGAGATTCAGAAGCCCTA+AGG 0.544074 6_1:+6264583 None:intergenic
AGCACAGCAGTCACATGGAT+TGG 0.544101 6_1:-6262519 Msa0871370:CDS
AATATCCAACAGTTGGCTGT+TGG 0.544187 6_1:+6262836 None:intergenic
GTAGATTTAGTTACCTGTGA+AGG 0.544427 6_1:+6262757 None:intergenic
AAATTAGAATATCCAACAGT+TGG 0.545058 6_1:+6262829 None:intergenic
GGTGTTTGTACACTGTTTGG+CGG 0.545314 6_1:+6263117 None:intergenic
TTAATCAATTTGTCCCAAGT+AGG 0.545867 6_1:-6263986 Msa0871370:CDS
CTCATAGCATGACCATGTCC+TGG 0.547495 6_1:+6263030 None:intergenic
GACAGTATTGTGAAGAATGT+TGG 0.548430 6_1:-6264888 Msa0871370:CDS
TGACACTGAAGAAGTTGCAT+TGG 0.548483 6_1:+6263452 None:intergenic
TGGCTTGGTACAAATGGACT+AGG 0.548518 6_1:+6262856 None:intergenic
GAATAACAACAGGCATAGAC+AGG 0.548628 6_1:-6262204 Msa0871370:CDS
GAGAAGAAGAGTTGAGTGAG+TGG 0.550334 6_1:-6263809 Msa0871370:CDS
GGCTAATCAAGCCCCTTCAC+AGG 0.551075 6_1:-6262770 Msa0871370:intron
GCGGCTGGATAGAAATGGTA+TGG 0.551376 6_1:-6263625 Msa0871370:CDS
GTAGACCATGGTAGAAGTAA+TGG 0.552062 6_1:-6263528 Msa0871370:CDS
CCTCACAGGTTGCAGGTGAA+AGG 0.553428 6_1:-6264064 Msa0871370:intron
GGGATGGAGCAGTAATTACT+GGG 0.554304 6_1:-6261170 Msa0871370:three_prime_UTR
ATGCAACTTCTTCAGTGTCA+AGG 0.556856 6_1:-6263449 Msa0871370:CDS
TGCTGCGGTTGTTCATGCAC+AGG 0.560692 6_1:+6263219 None:intergenic
TTGCGACCTTTACCTCCACC+TGG 0.561617 6_1:-6262916 Msa0871370:CDS
ATCTTCCGTAAGACAGAAGG+AGG 0.562765 6_1:+6264663 None:intergenic
TATTTAGCTGACAATTCCAC+TGG 0.562774 6_1:-6263897 Msa0871370:CDS
TTCCTAACAGGATTCTTCGA+TGG 0.563320 6_1:+6263306 None:intergenic
CTAAGGGAATTAACGCCTGA+TGG 0.563337 6_1:+6264600 None:intergenic
ATTGGGATGAGGTGGCATCT+GGG 0.564645 6_1:+6262879 None:intergenic
TGCAACTTCTTCAGTGTCAA+GGG 0.565136 6_1:-6263448 Msa0871370:CDS
CCAAGCCAACAGCCAACTGT+TGG 0.566173 6_1:-6262841 Msa0871370:CDS
TATTTGCAACCGTATTGTTG+AGG 0.569428 6_1:-6266992 Msa0871370:intron
GGAGCGTGTAGGCCAGGTGG+AGG 0.571119 6_1:+6262904 None:intergenic
CTATCAAGTCCAATTCTTGG+TGG 0.571361 6_1:+6263945 None:intergenic
TCCATCACAAAATCTTCAGA+CGG 0.571706 6_1:+6262133 None:intergenic
ATGCAGGGCACCTATGACGA+AGG 0.573164 6_1:-6261479 Msa0871370:intron
TCAATATTTGAATTGAGACC+AGG 0.575901 6_1:+6263420 None:intergenic
AAGATCTTCCAACCCTACTT+GGG 0.576601 6_1:+6263973 None:intergenic
GTAAGCCTTTGTTAGTTGAG+CGG 0.577243 6_1:-6263644 Msa0871370:CDS
AACAGGTCGTACATTTGGCA+GGG 0.583155 6_1:+6263002 None:intergenic
CCTAGACAGTGCACAACTTG+TGG 0.586792 6_1:-6262565 Msa0871370:CDS
ATGGCAGAATACTGAAGAAG+AGG 0.586832 6_1:-6263583 Msa0871370:CDS
AATAGTACCATTGTGAGTCA+TGG 0.588735 6_1:-6263261 Msa0871370:CDS
ACAGGTCGTACATTTGGCAG+GGG 0.590048 6_1:+6263003 None:intergenic
AGCAGTAATTACTGGGGACA+TGG 0.590558 6_1:-6261163 Msa0871370:three_prime_UTR
GGACTAGGATTGGGATGAGG+TGG 0.594447 6_1:+6262871 None:intergenic
AATTACTGGGGACATGGCAA+AGG 0.594802 6_1:-6261157 Msa0871370:three_prime_UTR
TAGCTGACAATTCCACTGGT+AGG 0.595215 6_1:-6263893 Msa0871370:CDS
AACGTCGTGAAGAAGATCCT+AGG 0.595573 6_1:-6267164 Msa0871370:CDS
AGATTTAGTTACCTGTGAAG+GGG 0.598702 6_1:+6262759 None:intergenic
AGACGAGCACAGCAGTCACA+TGG 0.599845 6_1:-6262524 Msa0871370:CDS
AGTGAGACGATGTGGCTTAG+TGG 0.601641 6_1:-6262433 Msa0871370:CDS
AATCTCCTCGACCTACTCAT+GGG 0.602277 6_1:-6264569 Msa0871370:CDS
AGGAGATTCAGAAGCCCTAA+GGG 0.603089 6_1:+6264584 None:intergenic
GATGGAGCGTGTAGGCCAGG+TGG 0.605223 6_1:+6262901 None:intergenic
TCAATCTTCCGTAAGACAGA+AGG 0.606789 6_1:+6264660 None:intergenic
CTCACAAACCATTTACGAGA+GGG 0.607148 6_1:+6262454 None:intergenic
GGAAACCATTACTTCTACCA+TGG 0.608961 6_1:+6263523 None:intergenic
TCCAGCCGCTCAACTAACAA+AGG 0.610598 6_1:+6263639 None:intergenic
CTACCATGGTCTACTACTGT+CGG 0.610600 6_1:+6263537 None:intergenic
GCAGAATCTTCTGAAATACA+TGG 0.610774 6_1:-6261350 Msa0871370:three_prime_UTR
GGGTTAGATGAAATCAGACC+AGG 0.611439 6_1:+6263138 None:intergenic
GGAAATATAGGAGTTATGCT+GGG 0.611878 6_1:+6263327 None:intergenic
GTTTGATCCAGACACTCTGA+AGG 0.612852 6_1:-6262629 Msa0871370:CDS
TTGTTCTCAACACCGTGCTG+CGG 0.615224 6_1:+6263204 None:intergenic
CCAACGAGGATTGATGGTGG+AGG 0.616757 6_1:+6267210 None:intergenic
GCATCTGGGATGGAGCGTGT+AGG 0.618464 6_1:+6262893 None:intergenic
AAATATTCATCCATATATGA+GGG 0.620513 6_1:+6263915 None:intergenic
TGTATCCCATGAGTAGGTCG+AGG 0.621605 6_1:+6264564 None:intergenic
ATGTACATAATTTAGGCAAG+AGG 0.623567 6_1:+6261327 None:intergenic
CCTCCACCATCAATCCTCGT+TGG 0.625396 6_1:-6267210 Msa0871370:CDS
CGACCAACGAGGATTGATGG+TGG 0.625674 6_1:+6267207 None:intergenic
TTAACATGTATCCCATGAGT+AGG 0.630712 6_1:+6264558 None:intergenic
TGCATTTAGCATGAATAATG+GGG 0.635399 6_1:+6262170 None:intergenic
ACAGTGATGAAACGGAGGAG+TGG 0.635697 6_1:-6262264 Msa0871370:CDS
CAATCTCATTGCTCATGGTG+GGG 0.637259 6_1:+6267241 None:intergenic
CGTCTTGGGATTTGAATCGG+AGG 0.638892 6_1:+6262542 None:intergenic
AATGGACTAGGATTGGGATG+AGG 0.642770 6_1:+6262868 None:intergenic
GTTGGCTGTTCCGGCCGACG+AGG 0.646045 6_1:-6262332 Msa0871370:CDS
TCTCTCAACTGTCCTACCAG+TGG 0.650741 6_1:+6263881 None:intergenic
CCGAAACTCATAAGTTACAG+TGG 0.652773 6_1:+6261408 None:intergenic
TGTCTTACGGAAGATTGACG+TGG 0.654293 6_1:-6264655 Msa0871370:CDS
ATAAGGTTATGACAACATCA+TGG 0.656509 6_1:-6263602 Msa0871370:CDS
GGTTGCGAATTTCTCAACCT+AGG 0.656958 6_1:+6267147 None:intergenic
CTGTCCAAGAGATAGAGTGA+AGG 0.659112 6_1:+6264906 None:intergenic
ATAAACTATAGATGTTACAC+AGG 0.660062 6_1:+6261293 None:intergenic
ATGACATATAGCCTTAGTAA+CGG 0.660592 6_1:-6263738 Msa0871370:CDS
TAGCCAATGAGATTACACCT+TGG 0.661273 6_1:+6262788 None:intergenic
CTGCAGGCAAAACTGTTGGA+CGG 0.661666 6_1:+6263394 None:intergenic
GATGTGGCTTAGTGGTGCAG+AGG 0.663497 6_1:-6262425 Msa0871370:CDS
GACGATGCTGGATCCTGAGG+TGG 0.665612 6_1:+6263078 None:intergenic
TGTGACGATGCTGGATCCTG+AGG 0.668027 6_1:+6263075 None:intergenic
TAACCTACTTCGGGTAGACG+CGG 0.669168 6_1:+6264840 None:intergenic
GATTAGACCATGACTCACAA+TGG 0.673650 6_1:+6263254 None:intergenic
CATCACAAAATCTTCAGACG+GGG 0.674739 6_1:+6262135 None:intergenic
CCATAATCAACAGCATGATG+GGG 0.676024 6_1:+6263852 None:intergenic
CAGGTCGTACATTTGGCAGG+GGG 0.677425 6_1:+6263004 None:intergenic
GTGCATGAACAACCGCAGCA+CGG 0.680455 6_1:-6263216 Msa0871370:CDS
ACTCACAAACCATTTACGAG+AGG 0.681960 6_1:+6262453 None:intergenic
GGATCCATGAGCATTTACAA+AGG 0.684536 6_1:-6261136 Msa0871370:three_prime_UTR
AGTCCGACAGTAGTAGACCA+TGG 0.699248 6_1:-6263540 Msa0871370:CDS
GCAGTCAAAGAAAACGAATG+CGG 0.700511 6_1:-6261457 Msa0871370:CDS
GGTTTGTGAGTGAGACGATG+TGG 0.720083 6_1:-6262441 Msa0871370:CDS
TCTTCCGTAAGACAGAAGGA+GGG 0.728444 6_1:+6264664 None:intergenic
AATATAGGAGTTATGCTGGG+AGG 0.735215 6_1:+6263330 None:intergenic
GGATGGAGCAGTAATTACTG+GGG 0.757111 6_1:-6261169 Msa0871370:three_prime_UTR
AAGCCTTGAATCGACCAACG+AGG 0.765396 6_1:+6267196 None:intergenic
TTTGCCAACCGAGACCACTG+AGG 0.774441 6_1:-6262374 Msa0871370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATTAATAATTGTTTATT+TGG - chr6_1:6261740-6261759 Msa0871370:intron 10.0%
!! TGATTAATAATTGTTTATTT+GGG - chr6_1:6261741-6261760 Msa0871370:intron 10.0%
!! ATATAATATAATTACAAAGT+TGG + chr6_1:6265809-6265828 None:intergenic 10.0%
!! TGTAATTATATTATATTTGT+AGG - chr6_1:6265813-6265832 Msa0871370:intron 10.0%
!!! ACAATTTTAAAAGATTTTTT+GGG + chr6_1:6267270-6267289 None:intergenic 10.0%
!! ATAATTTCGTGTAATAATAA+TGG - chr6_1:6262170-6262189 Msa0871370:CDS 15.0%
!! TAATTTCGTGTAATAATAAT+GGG - chr6_1:6262171-6262190 Msa0871370:CDS 15.0%
!! ACAAAATAACATATTAACAT+AGG + chr6_1:6262683-6262702 None:intergenic 15.0%
!! AGATATTTATAGAAAATGAT+AGG + chr6_1:6262946-6262965 None:intergenic 15.0%
!! TCTTCTTATTAAGTTTATAT+GGG - chr6_1:6263117-6263136 Msa0871370:CDS 15.0%
!!! TCTAAAATCAAAATTGATAT+GGG + chr6_1:6263236-6263255 None:intergenic 15.0%
!! AGAAAAAATAGAAAAGAAAA+AGG + chr6_1:6263434-6263453 None:intergenic 15.0%
!! ATAACAGAATTAAATCATTT+AGG + chr6_1:6263685-6263704 None:intergenic 15.0%
!!! AAATATTTTAATTTCTGTTG+AGG - chr6_1:6264231-6264250 Msa0871370:intron 15.0%
!! TAATTTGATTAATTCACTTA+TGG - chr6_1:6265669-6265688 Msa0871370:intron 15.0%
!!! CAATTTTAAAAGATTTTTTG+GGG + chr6_1:6267269-6267288 None:intergenic 15.0%
!!! GACAATTTTAAAAGATTTTT+TGG + chr6_1:6267271-6267290 None:intergenic 15.0%
!!! ATTTCTTTTACATTATTTCT+GGG - chr6_1:6267291-6267310 Msa0871370:five_prime_UTR 15.0%
!!! TTTTAGTTCATTTCATTTGA+TGG - chr6_1:6261681-6261700 Msa0871370:intron 20.0%
!!! TTTAGTTCATTTCATTTGAT+GGG - chr6_1:6261682-6261701 Msa0871370:intron 20.0%
!! ATAATTGTTTATTTGGGAAT+TGG - chr6_1:6261747-6261766 Msa0871370:intron 20.0%
!!! TTGATAACATTGTTAACAAA+TGG - chr6_1:6262020-6262039 Msa0871370:intron 20.0%
!!! AGTACTTAAAAATCGATTTT+TGG - chr6_1:6262090-6262109 Msa0871370:intron 20.0%
!!! TGAAATAGTTAGTTTATCAA+TGG - chr6_1:6262125-6262144 Msa0871370:intron 20.0%
!! AATTTCGTGTAATAATAATG+GGG - chr6_1:6262172-6262191 Msa0871370:CDS 20.0%
!! ACTGAAAATACTATAATATC+TGG - chr6_1:6262290-6262309 Msa0871370:CDS 20.0%
!!! ATATCTGGAGTAATTTTTAA+AGG - chr6_1:6262305-6262324 Msa0871370:CDS 20.0%
!! CAAAATCATTCAATTTATTC+AGG + chr6_1:6262552-6262571 None:intergenic 20.0%
!! TATTTATAGAAAATGATAGG+TGG + chr6_1:6262943-6262962 None:intergenic 20.0%
!! CATATAAACTTAATAAGAAG+AGG + chr6_1:6263118-6263137 None:intergenic 20.0%
!! CTCTTCTTATTAAGTTTATA+TGG - chr6_1:6263116-6263135 Msa0871370:CDS 20.0%
!! AAATAAGTTTGATTCTTTGT+TGG - chr6_1:6263163-6263182 Msa0871370:CDS 20.0%
!! CTAAAATCAAAATTGATATG+GGG + chr6_1:6263235-6263254 None:intergenic 20.0%
!!! CTCTAAAATCAAAATTGATA+TGG + chr6_1:6263237-6263256 None:intergenic 20.0%
!! TAAGAATTGGTTAAAGAATT+CGG - chr6_1:6263297-6263316 Msa0871370:CDS 20.0%
!! CCTGAAAAATAATAAACAAT+TGG + chr6_1:6263535-6263554 None:intergenic 20.0%
!!! CCAATTGTTTATTATTTTTC+AGG - chr6_1:6263532-6263551 Msa0871370:CDS 20.0%
!! AAATATTCATCCATATATGA+GGG + chr6_1:6264569-6264588 None:intergenic 20.0%
!! TAAATATTCATCCATATATG+AGG + chr6_1:6264570-6264589 None:intergenic 20.0%
!!! TTATATTTGTAGGATTTTGT+TGG - chr6_1:6265823-6265842 Msa0871370:intron 20.0%
!!! TATTTTTTTTACTTTCCCAA+TGG - chr6_1:6266603-6266622 Msa0871370:intron 20.0%
!!! CATTTCTTTTACATTATTTC+TGG - chr6_1:6267290-6267309 Msa0871370:five_prime_UTR 20.0%
!! ATTGTTGTATCCAATATAAA+TGG - chr6_1:6267391-6267410 Msa0871370:five_prime_UTR 20.0%
! TGAATTCTTCAATTGTTCAA+AGG + chr6_1:6261104-6261123 None:intergenic 25.0%
!!! AAACATTAAGGGTTTTGAAA+CGG + chr6_1:6261151-6261170 None:intergenic 25.0%
! GAAAATTGAGAGAGAAATTA+GGG + chr6_1:6261201-6261220 None:intergenic 25.0%
! AAACAAAAACCTCAACAATA+CGG + chr6_1:6261501-6261520 None:intergenic 25.0%
! ATAACTCTTAATCTGAACAA+TGG + chr6_1:6261552-6261571 None:intergenic 25.0%
!! TTAGTTTATTGCTATTCGAT+AGG - chr6_1:6261645-6261664 Msa0871370:intron 25.0%
! TAAGTACTCAATTGTGTTAT+TGG + chr6_1:6262078-6262097 None:intergenic 25.0%
! ACTAACTATTTCACTTTCAT+TGG + chr6_1:6262118-6262137 None:intergenic 25.0%
!! AATAGTTAGTTTATCAATGG+TGG - chr6_1:6262128-6262147 Msa0871370:CDS 25.0%
!! TGTAATAATAATGGGGTTTA+CGG - chr6_1:6262179-6262198 Msa0871370:CDS 25.0%
! ATAATAGGAATTAGGAATTC+AGG - chr6_1:6262214-6262233 Msa0871370:CDS 25.0%
! ACAAACATTTCATCTGAAAA+GGG - chr6_1:6262334-6262353 Msa0871370:CDS 25.0%
!! GCTGAAATGATTAAGTATTT+TGG - chr6_1:6262376-6262395 Msa0871370:CDS 25.0%
! GAAATATATATGAAGTAAGC+TGG + chr6_1:6262657-6262676 None:intergenic 25.0%
! GTAGTATAAGAAACGAAAAT+TGG + chr6_1:6262975-6262994 None:intergenic 25.0%
!! GAATCAAACTTATTTCTCAT+TGG + chr6_1:6263158-6263177 None:intergenic 25.0%
! TTTGTTGGAAAAATCATACA+GGG - chr6_1:6263178-6263197 Msa0871370:CDS 25.0%
! AAATTACAATAACCTACTTC+GGG + chr6_1:6263653-6263672 None:intergenic 25.0%
! CAAATTACAATAACCTACTT+CGG + chr6_1:6263654-6263673 None:intergenic 25.0%
!!! TCCTTACAAAATATTTTGGA+TGG - chr6_1:6264024-6264043 Msa0871370:CDS 25.0%
!! TCCATCCAAAATATTTTGTA+AGG + chr6_1:6264028-6264047 None:intergenic 25.0%
! ATTTAGTTGCGGATTTAATA+AGG - chr6_1:6264058-6264077 Msa0871370:CDS 25.0%
!! TTTTCCACAAAAATCACATT+GGG + chr6_1:6264157-6264176 None:intergenic 25.0%
!! ATTTTCCACAAAAATCACAT+TGG + chr6_1:6264158-6264177 None:intergenic 25.0%
! AAATTAGAATATCCAACAGT+TGG + chr6_1:6265655-6265674 None:intergenic 25.0%
!! CAAAAACAAGTTTTACCATT+GGG + chr6_1:6266621-6266640 None:intergenic 25.0%
!!! CAATGGTAAAACTTGTTTTT+GGG - chr6_1:6266620-6266639 Msa0871370:intron 25.0%
!!! AATGGTAAAACTTGTTTTTG+GGG - chr6_1:6266621-6266640 Msa0871370:intron 25.0%
! TGTGCAATTTACGATATAAT+TGG + chr6_1:6266710-6266729 None:intergenic 25.0%
!! ATATCGTAAATTGCACATTT+TGG - chr6_1:6266713-6266732 Msa0871370:intron 25.0%
! CATGATGTTATTATTTCAAG+TGG - chr6_1:6266917-6266936 Msa0871370:intron 25.0%
! CCTATACATGTACATAATTT+AGG + chr6_1:6267164-6267183 None:intergenic 25.0%
! CCTAAATTATGTACATGTAT+AGG - chr6_1:6267161-6267180 Msa0871370:CDS 25.0%
! ATAAACTATAGATGTTACAC+AGG + chr6_1:6267191-6267210 None:intergenic 25.0%
! TATAGTTTATTGCAGTCAAA+AGG - chr6_1:6267201-6267220 Msa0871370:CDS 25.0%
GGAAAATTGAGAGAGAAATT+AGG + chr6_1:6261202-6261221 None:intergenic 30.0%
ATAGTAAGATCAGTGATGAT+AGG + chr6_1:6261424-6261443 None:intergenic 30.0%
! TGGTGTGGAATTTTACAAAA+GGG + chr6_1:6261532-6261551 None:intergenic 30.0%
! ATGGTGTGGAATTTTACAAA+AGG + chr6_1:6261533-6261552 None:intergenic 30.0%
TTAAACCAATTAGTAGCATC+TGG - chr6_1:6261808-6261827 Msa0871370:intron 30.0%
TAAACCAATTAGTAGCATCT+GGG - chr6_1:6261809-6261828 Msa0871370:intron 30.0%
TGAATGATGTTGTCAAATAC+CGG - chr6_1:6261859-6261878 Msa0871370:intron 30.0%
ATTCCTATTATATCCACCAT+AGG + chr6_1:6262205-6262224 None:intergenic 30.0%
! TGGTGGATATAATAGGAATT+AGG - chr6_1:6262206-6262225 Msa0871370:CDS 30.0%
GACAAACATTTCATCTGAAA+AGG - chr6_1:6262333-6262352 Msa0871370:CDS 30.0%
GAAATAAACGAGAATGAACA+AGG - chr6_1:6262502-6262521 Msa0871370:CDS 30.0%
ACTTGCTTGGAGTAAATATT+AGG - chr6_1:6262586-6262605 Msa0871370:CDS 30.0%
TTTAGACAAGCTGTTAACTA+AGG - chr6_1:6262725-6262744 Msa0871370:intron 30.0%
AGCTTATGCTAGAAGATAAT+TGG - chr6_1:6262763-6262782 Msa0871370:intron 30.0%
GCTTATGCTAGAAGATAATT+GGG - chr6_1:6262764-6262783 Msa0871370:intron 30.0%
AAAACTGGTATGGATACATT+AGG + chr6_1:6262897-6262916 None:intergenic 30.0%
CTTTGTTGGAAAAATCATAC+AGG - chr6_1:6263177-6263196 Msa0871370:CDS 30.0%
ATCAAAATTGATATGGGGTT+AGG + chr6_1:6263230-6263249 None:intergenic 30.0%
AATGGGAACTTTGTAAGAAT+TGG - chr6_1:6263284-6263303 Msa0871370:CDS 30.0%
CTATTTGTCTTACGTATCTT+GGG + chr6_1:6263949-6263968 None:intergenic 30.0%
TCTATTTGTCTTACGTATCT+TGG + chr6_1:6263950-6263969 None:intergenic 30.0%
! GCACTCCTTACAAAATATTT+TGG - chr6_1:6264020-6264039 Msa0871370:CDS 30.0%
GGATTTAATAAGGATGTGTT+TGG - chr6_1:6264068-6264087 Msa0871370:intron 30.0%
CTATTTCCTTGTATTCAGTA+AGG - chr6_1:6264285-6264304 Msa0871370:intron 30.0%
ACTGTTGGAAATGCAAATTT+CGG - chr6_1:6264455-6264474 Msa0871370:intron 30.0%
TTAATCAATTTGTCCCAAGT+AGG - chr6_1:6264495-6264514 Msa0871370:intron 30.0%
TAATCAATTTGTCCCAAGTA+GGG - chr6_1:6264496-6264515 Msa0871370:intron 30.0%
! ATGACATATAGCCTTAGTAA+CGG - chr6_1:6264743-6264762 Msa0871370:CDS 30.0%
ATAAGGTTATGACAACATCA+TGG - chr6_1:6264879-6264898 Msa0871370:CDS 30.0%
TCAATATTTGAATTGAGACC+AGG + chr6_1:6265064-6265083 None:intergenic 30.0%
!! TTGGCATTTATTGATTCGAA+TGG + chr6_1:6265202-6265221 None:intergenic 30.0%
CATCGTCACAATTTACTTAT+AGG - chr6_1:6265419-6265438 Msa0871370:intron 30.0%
! AAACAACTCTTTTCATTTCC+AGG - chr6_1:6265534-6265553 Msa0871370:intron 30.0%
! AACAACTCTTTTCATTTCCA+GGG - chr6_1:6265535-6265554 Msa0871370:intron 30.0%
TAGATTTAGTTACCTGTGAA+GGG + chr6_1:6265726-6265745 None:intergenic 30.0%
GTCAAAAATGGAAGGAAAAT+GGG + chr6_1:6265775-6265794 None:intergenic 30.0%
AGTCAAAAATGGAAGGAAAA+TGG + chr6_1:6265776-6265795 None:intergenic 30.0%
AAAGAAAGAAGATGAAGAGT+TGG - chr6_1:6266131-6266150 Msa0871370:intron 30.0%
! CACATAATGCACATGTATTT+TGG + chr6_1:6266176-6266195 None:intergenic 30.0%
CAAAATACATGTGCATTATG+TGG - chr6_1:6266174-6266193 Msa0871370:intron 30.0%
TGCATTTAGCATGAATAATG+GGG + chr6_1:6266314-6266333 None:intergenic 30.0%
CTGCATTTAGCATGAATAAT+GGG + chr6_1:6266315-6266334 None:intergenic 30.0%
TCTGCATTTAGCATGAATAA+TGG + chr6_1:6266316-6266335 None:intergenic 30.0%
! GAATAAATCTAGTTCAATGC+TGG + chr6_1:6266576-6266595 None:intergenic 30.0%
! CCAAAAACAAGTTTTACCAT+TGG + chr6_1:6266622-6266641 None:intergenic 30.0%
!! CCAATGGTAAAACTTGTTTT+TGG - chr6_1:6266619-6266638 Msa0871370:intron 30.0%
!!! ATGGTAAAACTTGTTTTTGG+GGG - chr6_1:6266622-6266641 Msa0871370:intron 30.0%
TTTGCAAAACATGACATAGA+AGG + chr6_1:6266777-6266796 None:intergenic 30.0%
! TATGTCATGTTTTGCAAATG+TGG - chr6_1:6266779-6266798 Msa0871370:intron 30.0%
! TTTTGCAAATGTGGATATCA+TGG - chr6_1:6266788-6266807 Msa0871370:intron 30.0%
TAAGTTACAGTGGACAAAAA+TGG + chr6_1:6267066-6267085 None:intergenic 30.0%
ATGTACATAATTTAGGCAAG+AGG + chr6_1:6267157-6267176 None:intergenic 30.0%
!!! CTTTTACATTATTTCTGGGA+TGG - chr6_1:6267295-6267314 Msa0871370:five_prime_UTR 30.0%
ATTCAAACAGTAAATGCTCA+TGG + chr6_1:6267373-6267392 None:intergenic 30.0%
CATCAATGCACCATTTATAT+TGG + chr6_1:6267404-6267423 None:intergenic 30.0%
GGGGGAAAATGAAACATTAA+GGG + chr6_1:6261162-6261181 None:intergenic 35.0%
TGGGGGAAAATGAAACATTA+AGG + chr6_1:6261163-6261182 None:intergenic 35.0%
!!! AGGGTTAGGGTTTTGAATTT+GGG + chr6_1:6261182-6261201 None:intergenic 35.0%
!!! TAGGGTTAGGGTTTTGAATT+TGG + chr6_1:6261183-6261202 None:intergenic 35.0%
TGAGAGAGAAATTAGGGTTA+GGG + chr6_1:6261195-6261214 None:intergenic 35.0%
TTGAGAGAGAAATTAGGGTT+AGG + chr6_1:6261196-6261215 None:intergenic 35.0%
GGGTGTGAAATTGAGAAATT+GGG + chr6_1:6261223-6261242 None:intergenic 35.0%
TGAACAATTTCTTCCGTTGA+AGG + chr6_1:6261358-6261377 None:intergenic 35.0%
CAACATCGTAATCATGCTAA+AGG - chr6_1:6261454-6261473 Msa0871370:CDS 35.0%
TATTTGCAACCGTATTGTTG+AGG - chr6_1:6261489-6261508 Msa0871370:intron 35.0%
! GTGTGGAATTTTACAAAAGG+GGG + chr6_1:6261530-6261549 None:intergenic 35.0%
! GGTGTGGAATTTTACAAAAG+GGG + chr6_1:6261531-6261550 None:intergenic 35.0%
TCTTAATCTGAACAATGGTG+TGG + chr6_1:6261547-6261566 None:intergenic 35.0%
!!! TTTGATGGGTTTCACAGTTT+TGG - chr6_1:6261696-6261715 Msa0871370:intron 35.0%
GAATGATGTTGTCAAATACC+GGG - chr6_1:6261860-6261879 Msa0871370:intron 35.0%
TCACAAATCGCAGAAAATAG+TGG + chr6_1:6262000-6262019 None:intergenic 35.0%
! AAATCCTCACAGCTTTTCAT+CGG - chr6_1:6262429-6262448 Msa0871370:CDS 35.0%
AACATTAGCGTATACTTGCT+TGG - chr6_1:6262573-6262592 Msa0871370:CDS 35.0%
! CTAGAAGATAATTGGGTTGT+TGG - chr6_1:6262771-6262790 Msa0871370:CDS 35.0%
TGCTGTATCTTTGTCAACAT+TGG - chr6_1:6263043-6263062 Msa0871370:CDS 35.0%
! AGGGATTCTTACAGAAGTAT+TGG - chr6_1:6263197-6263216 Msa0871370:CDS 35.0%
TTACAAAGTTCCCATTTCAG+AGG + chr6_1:6263280-6263299 None:intergenic 35.0%
! GCATGATGAGTTATGTGTTT+TGG + chr6_1:6263357-6263376 None:intergenic 35.0%
AGTTTCCACACTAAACTTAG+TGG + chr6_1:6263400-6263419 None:intergenic 35.0%
ATTGGAGACCATACAAATAG+CGG + chr6_1:6263517-6263536 None:intergenic 35.0%
GACAGTATTGTGAAGAATGT+TGG - chr6_1:6263593-6263612 Msa0871370:CDS 35.0%
!! AGAAGTATCGAACATATTCC+TGG + chr6_1:6263619-6263638 None:intergenic 35.0%
! TATAGTTCTATTGTCTGCCT+AGG - chr6_1:6263712-6263731 Msa0871370:CDS 35.0%
CCTGATGGTTGATTATTAAC+TGG + chr6_1:6263869-6263888 None:intergenic 35.0%
CCAGTTAATAATCAACCATC+AGG - chr6_1:6263866-6263885 Msa0871370:CDS 35.0%
TTAACATGTATCCCATGAGT+AGG + chr6_1:6263926-6263945 None:intergenic 35.0%
AACTGCATCTCATTTAGTTG+CGG - chr6_1:6264047-6264066 Msa0871370:CDS 35.0%
ACAAAAATCACATTGGGTTC+TGG + chr6_1:6264151-6264170 None:intergenic 35.0%
! AGAACCCAATGTGATTTTTG+TGG - chr6_1:6264150-6264169 Msa0871370:intron 35.0%
CAAAGTCCTTACTGAATACA+AGG + chr6_1:6264294-6264313 None:intergenic 35.0%
TATTTAGCTGACAATTCCAC+TGG - chr6_1:6264584-6264603 Msa0871370:CDS 35.0%
GTTGATTATGGCCTAGTTAA+AGG - chr6_1:6264641-6264660 Msa0871370:CDS 35.0%
TATGGCCTAGTTAAAGGATT+AGG - chr6_1:6264647-6264666 Msa0871370:CDS 35.0%
CTCTACCTAATCCTTTAACT+AGG + chr6_1:6264655-6264674 None:intergenic 35.0%
GGATAGAAATGGTATGGATA+AGG - chr6_1:6264862-6264881 Msa0871370:CDS 35.0%
TCTGATGAGAAACCAATAGT+TGG + chr6_1:6264989-6265008 None:intergenic 35.0%
GGAAATATAGGAGTTATGCT+GGG + chr6_1:6265157-6265176 None:intergenic 35.0%
TGGAAATATAGGAGTTATGC+TGG + chr6_1:6265158-6265177 None:intergenic 35.0%
GGATTCTTCGATGGAAATAT+AGG + chr6_1:6265169-6265188 None:intergenic 35.0%
ATGACTCACAATGGTACTAT+TGG + chr6_1:6265221-6265240 None:intergenic 35.0%
AATAGTACCATTGTGAGTCA+TGG - chr6_1:6265220-6265239 Msa0871370:intron 35.0%
TAAGTAAATTGTGACGATGC+TGG + chr6_1:6265418-6265437 None:intergenic 35.0%
! AAGAGTTGTTTCCGATTCTT+TGG + chr6_1:6265525-6265544 None:intergenic 35.0%
ATTAATTCACTTATGGCCCA+AGG - chr6_1:6265676-6265695 Msa0871370:intron 35.0%
AGATTTAGTTACCTGTGAAG+GGG + chr6_1:6265725-6265744 None:intergenic 35.0%
GTAGATTTAGTTACCTGTGA+AGG + chr6_1:6265727-6265746 None:intergenic 35.0%
TCTAGGAAGATTACCGTATA+AGG + chr6_1:6265902-6265921 None:intergenic 35.0%
!! GCTTACGGTTTTTAGACATA+CGG + chr6_1:6266002-6266021 None:intergenic 35.0%
! ATCTTCTTTCTTTTCCTCAG+TGG + chr6_1:6266124-6266143 None:intergenic 35.0%
! ATTATGTGGAGAACCTTTTG+AGG - chr6_1:6266188-6266207 Msa0871370:intron 35.0%
TCACTGTAAAACTCCTCAAA+AGG + chr6_1:6266204-6266223 None:intergenic 35.0%
! GGAGTTTTACAGTGATGAAA+CGG - chr6_1:6266209-6266228 Msa0871370:intron 35.0%
TTATTCCATTAGGCGCATTA+AGG + chr6_1:6266263-6266282 None:intergenic 35.0%
! ATGCCTGTTGTTATTCCATT+AGG + chr6_1:6266273-6266292 None:intergenic 35.0%
TCCATCACAAAATCTTCAGA+CGG + chr6_1:6266351-6266370 None:intergenic 35.0%
!!! AAGATTTTGTGATGGACGAA+GGG - chr6_1:6266355-6266374 Msa0871370:intron 35.0%
! GAAGAAATCTAGTTCAATGC+TGG + chr6_1:6266454-6266473 None:intergenic 35.0%
ATAATATGACTGCCGAATTC+TGG + chr6_1:6266654-6266673 None:intergenic 35.0%
CGGCAGTCATATTATTCATT+TGG - chr6_1:6266659-6266678 Msa0871370:intron 35.0%
TCACAATAGATTGCAACACT+AGG - chr6_1:6266812-6266831 Msa0871370:intron 35.0%
GAAGTTAGCAGCGATTAAAT+AGG + chr6_1:6266896-6266915 None:intergenic 35.0%
CCACTGTAACTTATGAGTTT+CGG - chr6_1:6267073-6267092 Msa0871370:CDS 35.0%
!! GCAGAATCTTCTGAAATACA+TGG - chr6_1:6267131-6267150 Msa0871370:CDS 35.0%
GTAAGGAACTGAAAATTTGC+AGG + chr6_1:6267237-6267256 None:intergenic 35.0%
!!! AGATTTTTTGGGGACAGTAA+AGG + chr6_1:6267259-6267278 None:intergenic 35.0%
!!! GGTTAGGGTTTTGAATTTGG+GGG + chr6_1:6261180-6261199 None:intergenic 40.0%
!!! GGGTTAGGGTTTTGAATTTG+GGG + chr6_1:6261181-6261200 None:intergenic 40.0%
GGGGTGTGAAATTGAGAAAT+TGG + chr6_1:6261224-6261243 None:intergenic 40.0%
ACAATCTCATTGCTCATGGT+GGG + chr6_1:6261244-6261263 None:intergenic 40.0%
AACAATCTCATTGCTCATGG+TGG + chr6_1:6261245-6261264 None:intergenic 40.0%
CTGAACAATCTCATTGCTCA+TGG + chr6_1:6261248-6261267 None:intergenic 40.0%
GAGAAATTCGCAACCTTCAA+CGG - chr6_1:6261342-6261361 Msa0871370:three_prime_UTR 40.0%
ATTGCCCAGATGCTACTAAT+TGG + chr6_1:6261816-6261835 None:intergenic 40.0%
TTTGTTCAAATTCCGCTACC+CGG + chr6_1:6261881-6261900 None:intergenic 40.0%
! TATGCTACAGTGCTGCTATA+GGG + chr6_1:6261961-6261980 None:intergenic 40.0%
!! AATGGTGGATTATAGAAGCC+AGG - chr6_1:6262143-6262162 Msa0871370:CDS 40.0%
!! ATGGTGGATTATAGAAGCCA+GGG - chr6_1:6262144-6262163 Msa0871370:CDS 40.0%
TTACACGAAATTATGTGCCC+TGG + chr6_1:6262164-6262183 None:intergenic 40.0%
TTAGGAATTCAGGACGATGA+TGG - chr6_1:6262224-6262243 Msa0871370:CDS 40.0%
GTGTTGTCAAATTGCCACTA+TGG + chr6_1:6262272-6262291 None:intergenic 40.0%
!! TTTTGGCAACTTGCTCAAGT+TGG - chr6_1:6262393-6262412 Msa0871370:CDS 40.0%
GATGAAAAGCTGTGAGGATT+TGG + chr6_1:6262430-6262449 None:intergenic 40.0%
! GAAAATGATAGGTGGTGATG+AGG + chr6_1:6262935-6262954 None:intergenic 40.0%
!! ACCAATCTCTCCTCTGAAAT+GGG - chr6_1:6263267-6263286 Msa0871370:CDS 40.0%
TCGAATCTCCGCTATTTGTA+TGG - chr6_1:6263506-6263525 Msa0871370:CDS 40.0%
TATTGTGAAGAATGTTGGCC+AGG - chr6_1:6263598-6263617 Msa0871370:CDS 40.0%
CGCATAGCAGAATGTAAACT+TGG + chr6_1:6263767-6263786 None:intergenic 40.0%
TCAATCTTCCGTAAGACAGA+AGG + chr6_1:6263824-6263843 None:intergenic 40.0%
ATCAGGCGTTAATTCCCTTA+GGG - chr6_1:6263883-6263902 Msa0871370:CDS 40.0%
! GTAAGGAGTGCAGATTTGAA+GGG + chr6_1:6264011-6264030 None:intergenic 40.0%
! TGTAAGGAGTGCAGATTTGA+AGG + chr6_1:6264012-6264031 None:intergenic 40.0%
GACTTTGTTCTACGTGAAAC+TGG - chr6_1:6264307-6264326 Msa0871370:intron 40.0%
AAGAGTTCTCTGTTGCTAGA+GGG + chr6_1:6264354-6264373 None:intergenic 40.0%
GATGTATTCTGACAGTGTGT+TGG - chr6_1:6264388-6264407 Msa0871370:intron 40.0%
TTAGACTCAACAGGAACTGT+TGG - chr6_1:6264440-6264459 Msa0871370:intron 40.0%
AAGATCTTCCAACCCTACTT+GGG + chr6_1:6264511-6264530 None:intergenic 40.0%
CTATCAAGTCCAATTCTTGG+TGG + chr6_1:6264539-6264558 None:intergenic 40.0%
CACCAAGAATTGGACTTGAT+AGG - chr6_1:6264537-6264556 Msa0871370:CDS 40.0%
TGCCTATCAAGTCCAATTCT+TGG + chr6_1:6264542-6264561 None:intergenic 40.0%
TAGGCATATGCCCTCATATA+TGG - chr6_1:6264556-6264575 Msa0871370:CDS 40.0%
CCATAATCAACAGCATGATG+GGG + chr6_1:6264632-6264651 None:intergenic 40.0%
GCCATAATCAACAGCATGAT+GGG + chr6_1:6264633-6264652 None:intergenic 40.0%
TTCCGACTATCACCAGAAAA+CGG + chr6_1:6264707-6264726 None:intergenic 40.0%
TAGGCATCAATTAGTGCTCT+TGG + chr6_1:6264785-6264804 None:intergenic 40.0%
! AGAGCACTAATTGATGCCTA+TGG - chr6_1:6264785-6264804 Msa0871370:intron 40.0%
!! TTGGCTTTTGTCACTACCAT+AGG + chr6_1:6264804-6264823 None:intergenic 40.0%
GACAAAAGCCAAGAAACTTC+TGG - chr6_1:6264812-6264831 Msa0871370:intron 40.0%
GTAAGCCTTTGTTAGTTGAG+CGG - chr6_1:6264837-6264856 Msa0871370:intron 40.0%
ATGGCAGAATACTGAAGAAG+AGG - chr6_1:6264898-6264917 Msa0871370:CDS 40.0%
TGAAGAAGAGGAGTTCGATT+GGG - chr6_1:6264910-6264929 Msa0871370:CDS 40.0%
GTAGACCATGGTAGAAGTAA+TGG - chr6_1:6264953-6264972 Msa0871370:intron 40.0%
GGAAACCATTACTTCTACCA+TGG + chr6_1:6264961-6264980 None:intergenic 40.0%
AGAAACCAATAGTTGGTTGC+AGG + chr6_1:6264982-6265001 None:intergenic 40.0%
TGACACTGAAGAAGTTGCAT+TGG + chr6_1:6265032-6265051 None:intergenic 40.0%
ATGCAACTTCTTCAGTGTCA+AGG - chr6_1:6265032-6265051 Msa0871370:intron 40.0%
TGCAACTTCTTCAGTGTCAA+GGG - chr6_1:6265033-6265052 Msa0871370:intron 40.0%
AATATAGGAGTTATGCTGGG+AGG + chr6_1:6265154-6265173 None:intergenic 40.0%
TTCCATCGAAGAATCCTGTT+AGG - chr6_1:6265173-6265192 Msa0871370:intron 40.0%
TTCCTAACAGGATTCTTCGA+TGG + chr6_1:6265178-6265197 None:intergenic 40.0%
! GATTCGAATGGATTCCTAAC+AGG + chr6_1:6265190-6265209 None:intergenic 40.0%
GATTAGACCATGACTCACAA+TGG + chr6_1:6265230-6265249 None:intergenic 40.0%
GGTGGAAAAAACTGGAATGA+CGG + chr6_1:6265388-6265407 None:intergenic 40.0%
!!! ATTCCAGTTTTTTCCACCTC+AGG - chr6_1:6265390-6265409 Msa0871370:intron 40.0%
! AACTCTTTTCATTTCCAGGG+AGG - chr6_1:6265538-6265557 Msa0871370:intron 40.0%
!! GGTACAAATGGACTAGGATT+GGG + chr6_1:6265622-6265641 None:intergenic 40.0%
!! TGGTACAAATGGACTAGGAT+TGG + chr6_1:6265623-6265642 None:intergenic 40.0%
AATATCCAACAGTTGGCTGT+TGG + chr6_1:6265648-6265667 None:intergenic 40.0%
AGCCAATGAGATTACACCTT+GGG + chr6_1:6265695-6265714 None:intergenic 40.0%
TAGCCAATGAGATTACACCT+TGG + chr6_1:6265696-6265715 None:intergenic 40.0%
GCAAGCAAGTCAAAAATGGA+AGG + chr6_1:6265783-6265802 None:intergenic 40.0%
GTTCGCAAGCAAGTCAAAAA+TGG + chr6_1:6265787-6265806 None:intergenic 40.0%
TCTGCAATCAGTGCCTTATA+CGG - chr6_1:6265886-6265905 Msa0871370:intron 40.0%
CTCACAAACCATTTACGAGA+GGG + chr6_1:6266030-6266049 None:intergenic 40.0%
ACTCACAAACCATTTACGAG+AGG + chr6_1:6266031-6266050 None:intergenic 40.0%
CAAAAAACCTGGAGCTGATT+CGG + chr6_1:6266091-6266110 None:intergenic 40.0%
! TTTCTTTTCCTCAGTGGTCT+CGG + chr6_1:6266118-6266137 None:intergenic 40.0%
!!! ACATGTATTTTGGTCCTCGT+CGG + chr6_1:6266166-6266185 None:intergenic 40.0%
! GTTTTACAGTGATGAAACGG+AGG - chr6_1:6266212-6266231 Msa0871370:intron 40.0%
GTATACCTTAATGCGCCTAA+TGG - chr6_1:6266255-6266274 Msa0871370:intron 40.0%
GAATAACAACAGGCATAGAC+AGG - chr6_1:6266277-6266296 Msa0871370:intron 40.0%
CATCACAAAATCTTCAGACG+GGG + chr6_1:6266349-6266368 None:intergenic 40.0%
CCATCACAAAATCTTCAGAC+GGG + chr6_1:6266350-6266369 None:intergenic 40.0%
!!! GAAGATTTTGTGATGGACGA+AGG - chr6_1:6266354-6266373 Msa0871370:intron 40.0%
!!! AGATTTTGTGATGGACGAAG+GGG - chr6_1:6266356-6266375 Msa0871370:intron 40.0%
GCAAAACATGACATAGAAGG+CGG + chr6_1:6266774-6266793 None:intergenic 40.0%
TTGTTTCCCTCTTTGTATGC+AGG - chr6_1:6266986-6267005 Msa0871370:intron 40.0%
TGTTTCCCTCTTTGTATGCA+GGG - chr6_1:6266987-6267006 Msa0871370:intron 40.0%
GCAGTCAAAGAAAACGAATG+CGG - chr6_1:6267024-6267043 Msa0871370:CDS 40.0%
CCGAAACTCATAAGTTACAG+TGG + chr6_1:6267076-6267095 None:intergenic 40.0%
!! TTTTGGGGACAGTAAAGGTA+AGG + chr6_1:6267254-6267273 None:intergenic 40.0%
GGATCCATGAGCATTTACAA+AGG - chr6_1:6267345-6267364 Msa0871370:five_prime_UTR 40.0%
GGATCCTTTGTAAATGCTCA+TGG + chr6_1:6267352-6267371 None:intergenic 40.0%
CAATCTCATTGCTCATGGTG+GGG + chr6_1:6261243-6261262 None:intergenic 45.0%
AATCGACCAACGAGGATTGA+TGG + chr6_1:6261280-6261299 None:intergenic 45.0%
! AATCCTCGTTGGTCGATTCA+AGG - chr6_1:6261282-6261301 Msa0871370:three_prime_UTR 45.0%
AACGTCGTGAAGAAGATCCT+AGG - chr6_1:6261317-6261336 Msa0871370:three_prime_UTR 45.0%
GGTTGCGAATTTCTCAACCT+AGG + chr6_1:6261337-6261356 None:intergenic 45.0%
TGTTGTCAAATACCGGGTAG+CGG - chr6_1:6261866-6261885 Msa0871370:intron 45.0%
! CTATGCTACAGTGCTGCTAT+AGG + chr6_1:6261962-6261981 None:intergenic 45.0%
ATAGCAGCACTGTAGCATAG+CGG - chr6_1:6261962-6261981 Msa0871370:intron 45.0%
! ATAATGGGGTTTACGGCCTA+TGG - chr6_1:6262186-6262205 Msa0871370:CDS 45.0%
!! CGGCCTATGGTGGATATAAT+AGG - chr6_1:6262199-6262218 Msa0871370:CDS 45.0%
ACCATGTTGTACTGCCATAG+TGG - chr6_1:6262255-6262274 Msa0871370:CDS 45.0%
AACTCCGATGAAAAGCTGTG+AGG + chr6_1:6262436-6262455 None:intergenic 45.0%
! GTGAATGCTACCTGGGTTTT+AGG - chr6_1:6262467-6262486 Msa0871370:CDS 45.0%
CTACAAGCAACCTAAAACCC+AGG + chr6_1:6262480-6262499 None:intergenic 45.0%
GAGAGAACGCAAAACTGGTA+TGG + chr6_1:6262907-6262926 None:intergenic 45.0%
! CACCAATCTCTCCTCTGAAA+TGG - chr6_1:6263266-6263285 Msa0871370:CDS 45.0%
TCCCATTTCAGAGGAGAGAT+TGG + chr6_1:6263271-6263290 None:intergenic 45.0%
ACACGCCACTAAGTTTAGTG+TGG - chr6_1:6263392-6263411 Msa0871370:CDS 45.0%
GCTACCTTCACTCTATCTCT+TGG - chr6_1:6263571-6263590 Msa0871370:CDS 45.0%
CTGTCCAAGAGATAGAGTGA+AGG + chr6_1:6263578-6263597 None:intergenic 45.0%
TCTGCTATGCGACATCTCTT+TGG - chr6_1:6263776-6263795 Msa0871370:CDS 45.0%
TCTTCCCTCCTTCTGTCTTA+CGG - chr6_1:6263813-6263832 Msa0871370:CDS 45.0%
TCTTCCGTAAGACAGAAGGA+GGG + chr6_1:6263820-6263839 None:intergenic 45.0%
ATCTTCCGTAAGACAGAAGG+AGG + chr6_1:6263821-6263840 None:intergenic 45.0%
TGTCTTACGGAAGATTGACG+TGG - chr6_1:6263826-6263845 Msa0871370:CDS 45.0%
CTAAGGGAATTAACGCCTGA+TGG + chr6_1:6263884-6263903 None:intergenic 45.0%
CATCAGGCGTTAATTCCCTT+AGG - chr6_1:6263882-6263901 Msa0871370:CDS 45.0%
AGGAGATTCAGAAGCCCTAA+GGG + chr6_1:6263900-6263919 None:intergenic 45.0%
AATCTCCTCGACCTACTCAT+GGG - chr6_1:6263912-6263931 Msa0871370:CDS 45.0%
CAAGAGTTCTCTGTTGCTAG+AGG + chr6_1:6264355-6264374 None:intergenic 45.0%
!! TGTGTTGGTTTCATCCTCAC+AGG - chr6_1:6264403-6264422 Msa0871370:intron 45.0%
GGTGAAAGGTTAGACTCAAC+AGG - chr6_1:6264431-6264450 Msa0871370:intron 45.0%
CAATTTGTCCCAAGTAGGGT+TGG - chr6_1:6264500-6264519 Msa0871370:intron 45.0%
GAAGATCTTCCAACCCTACT+TGG + chr6_1:6264512-6264531 None:intergenic 45.0%
TCTTCGTCACCACCAAGAAT+TGG - chr6_1:6264527-6264546 Msa0871370:CDS 45.0%
TAGCTGACAATTCCACTGGT+AGG - chr6_1:6264588-6264607 Msa0871370:CDS 45.0%
! CCCCATCATGCTGTTGATTA+TGG - chr6_1:6264629-6264648 Msa0871370:CDS 45.0%
GGCCATAATCAACAGCATGA+TGG + chr6_1:6264634-6264653 None:intergenic 45.0%
GAGAAGAAGAGTTGAGTGAG+TGG - chr6_1:6264672-6264691 Msa0871370:CDS 45.0%
!! AGCCGTTTTCTGGTGATAGT+CGG - chr6_1:6264702-6264721 Msa0871370:CDS 45.0%
!! AGTGCTCTTGGATTTTGACG+TGG + chr6_1:6264773-6264792 None:intergenic 45.0%
GCTTACTGCCAGAAGTTTCT+TGG + chr6_1:6264823-6264842 None:intergenic 45.0%
CTGAAGAAGAGGAGTTCGAT+TGG - chr6_1:6264909-6264928 Msa0871370:CDS 45.0%
CTACCATGGTCTACTACTGT+CGG + chr6_1:6264947-6264966 None:intergenic 45.0%
GGTTTCCTGCAACCAACTAT+TGG - chr6_1:6264974-6264993 Msa0871370:intron 45.0%
AAAGCTGCAGGCAAAACTGT+TGG + chr6_1:6265094-6265113 None:intergenic 45.0%
!!! TGCCTGCAGCTTTTGAAATG+AGG - chr6_1:6265101-6265120 Msa0871370:intron 45.0%
TGCCTCATTTCAAAAGCTGC+AGG + chr6_1:6265106-6265125 None:intergenic 45.0%
ACGTGGAGCATGCACATTTA+CGG + chr6_1:6265131-6265150 None:intergenic 45.0%
GGTTGTTCATGCACAGGAAA+AGG + chr6_1:6265259-6265278 None:intergenic 45.0%
GCTGATTAGGTAGCTGATAC+AGG + chr6_1:6265321-6265340 None:intergenic 45.0%
ATCAGACCAGGAAGCTGATT+AGG + chr6_1:6265334-6265353 None:intergenic 45.0%
GGGTTAGATGAAATCAGACC+AGG + chr6_1:6265346-6265365 None:intergenic 45.0%
GTGTTTGTACACTGTTTGGC+GGG + chr6_1:6265366-6265385 None:intergenic 45.0%
GGTGTTTGTACACTGTTTGG+CGG + chr6_1:6265367-6265386 None:intergenic 45.0%
GACGGTGTTTGTACACTGTT+TGG + chr6_1:6265370-6265389 None:intergenic 45.0%
GATCCTGAGGTGGAAAAAAC+TGG + chr6_1:6265396-6265415 None:intergenic 45.0%
ACTTATAGGCCATCTTTGCC+AGG - chr6_1:6265433-6265452 Msa0871370:intron 45.0%
AACAGGTCGTACATTTGGCA+GGG + chr6_1:6265482-6265501 None:intergenic 45.0%
TAACAGGTCGTACATTTGGC+AGG + chr6_1:6265483-6265502 None:intergenic 45.0%
GGCATAACAGGTCGTACATT+TGG + chr6_1:6265487-6265506 None:intergenic 45.0%
TTGTTTCCGATTCTTTGGCC+TGG + chr6_1:6265520-6265539 None:intergenic 45.0%
!! AATGGACTAGGATTGGGATG+AGG + chr6_1:6265616-6265635 None:intergenic 45.0%
!! TGGCTTGGTACAAATGGACT+AGG + chr6_1:6265628-6265647 None:intergenic 45.0%
GTTTGATCCAGACACTCTGA+AGG - chr6_1:6265852-6265871 Msa0871370:intron 45.0%
GCTCGTCTTGGGATTTGAAT+CGG + chr6_1:6265945-6265964 None:intergenic 45.0%
AGATGAAGAGTTGGCTGTTC+CGG - chr6_1:6266140-6266159 Msa0871370:intron 45.0%
GCGCCTAATGGAATAACAAC+AGG - chr6_1:6266267-6266286 Msa0871370:intron 45.0%
! CCCGTCTGAAGATTTTGTGA+TGG - chr6_1:6266347-6266366 Msa0871370:intron 45.0%
AAACATGACATAGAAGGCGG+CGG + chr6_1:6266771-6266790 None:intergenic 45.0%
ATAGATTGCAACACTAGGCG+TGG - chr6_1:6266817-6266836 Msa0871370:intron 45.0%
TCTTTGACTGCCTTCGTCAT+AGG + chr6_1:6267015-6267034 None:intergenic 45.0%
TGGGATGGAGCAGTAATTAC+TGG - chr6_1:6267310-6267329 Msa0871370:five_prime_UTR 45.0%
GGGATGGAGCAGTAATTACT+GGG - chr6_1:6267311-6267330 Msa0871370:five_prime_UTR 45.0%
GGATGGAGCAGTAATTACTG+GGG - chr6_1:6267312-6267331 Msa0871370:five_prime_UTR 45.0%
AGCAGTAATTACTGGGGACA+TGG - chr6_1:6267318-6267337 Msa0871370:five_prime_UTR 45.0%
AATTACTGGGGACATGGCAA+AGG - chr6_1:6267324-6267343 Msa0871370:five_prime_UTR 45.0%
!! TTAAAAAAAAAAAAAACTTA+GGG + chr6_1:6265749-6265768 None:intergenic 5.0%
!! TTTAAAAAAAAAAAAAACTT+AGG + chr6_1:6265750-6265769 None:intergenic 5.0%
AAGCCTTGAATCGACCAACG+AGG + chr6_1:6261288-6261307 None:intergenic 50.0%
GCCACTATGGCAGTACAACA+TGG + chr6_1:6262259-6262278 None:intergenic 50.0%
TGCGTGTGTGAATGCTACCT+GGG - chr6_1:6262460-6262479 Msa0871370:CDS 50.0%
CTTGGGAGAGAACGCAAAAC+TGG + chr6_1:6262912-6262931 None:intergenic 50.0%
! GATAGGTGGTGATGAGGCTT+GGG + chr6_1:6262929-6262948 None:intergenic 50.0%
! TGATAGGTGGTGATGAGGCT+TGG + chr6_1:6262930-6262949 None:intergenic 50.0%
GTCAACATTGGCGATCTCAG+AGG - chr6_1:6263055-6263074 Msa0871370:CDS 50.0%
TAACCTACTTCGGGTAGACG+CGG + chr6_1:6263644-6263663 None:intergenic 50.0%
GTATGCCACGCAGAAAACCT+AGG + chr6_1:6263732-6263751 None:intergenic 50.0%
TGCGACATCTCTTTGGTACC+TGG - chr6_1:6263783-6263802 Msa0871370:CDS 50.0%
! AGGAGGGAAGACTTTTGACC+AGG + chr6_1:6263804-6263823 None:intergenic 50.0%
GAGGAGATTCAGAAGCCCTA+AGG + chr6_1:6263901-6263920 None:intergenic 50.0%
GAATCTCCTCGACCTACTCA+TGG - chr6_1:6263911-6263930 Msa0871370:CDS 50.0%
TGTATCCCATGAGTAGGTCG+AGG + chr6_1:6263920-6263939 None:intergenic 50.0%
GTTTCATCCTCACAGGTTGC+AGG - chr6_1:6264410-6264429 Msa0871370:intron 50.0%
TCTCTCAACTGTCCTACCAG+TGG + chr6_1:6264603-6264622 None:intergenic 50.0%
GACGTGGTTGTCCGTTACTA+AGG + chr6_1:6264757-6264776 None:intergenic 50.0%
TCCAGCCGCTCAACTAACAA+AGG + chr6_1:6264845-6264864 None:intergenic 50.0%
GTTGAGCGGCTGGATAGAAA+TGG - chr6_1:6264851-6264870 Msa0871370:CDS 50.0%
GCGGCTGGATAGAAATGGTA+TGG - chr6_1:6264856-6264875 Msa0871370:CDS 50.0%
AGTCCGACAGTAGTAGACCA+TGG - chr6_1:6264941-6264960 Msa0871370:intron 50.0%
CTGCAGGCAAAACTGTTGGA+CGG + chr6_1:6265090-6265109 None:intergenic 50.0%
TTGTTCTCAACACCGTGCTG+CGG + chr6_1:6265280-6265299 None:intergenic 50.0%
CAGCTACCTAATCAGCTTCC+TGG - chr6_1:6265325-6265344 Msa0871370:intron 50.0%
TGACCATGTCCTGGCAAAGA+TGG + chr6_1:6265445-6265464 None:intergenic 50.0%
CTCATAGCATGACCATGTCC+TGG + chr6_1:6265454-6265473 None:intergenic 50.0%
ACAGGTCGTACATTTGGCAG+GGG + chr6_1:6265481-6265500 None:intergenic 50.0%
CGATTCTTTGGCCTGGCAAA+GGG + chr6_1:6265513-6265532 None:intergenic 50.0%
CCTTTGCCAGGCCAAAGAAT+CGG - chr6_1:6265511-6265530 Msa0871370:intron 50.0%
ATTGGGATGAGGTGGCATCT+GGG + chr6_1:6265605-6265624 None:intergenic 50.0%
!! GGCTGTTGGCTTGGTACAAA+TGG + chr6_1:6265634-6265653 None:intergenic 50.0%
GGCCCAAGGTGTAATCTCAT+TGG - chr6_1:6265690-6265709 Msa0871370:intron 50.0%
! TGACGAACCTTCAGAGTGTC+TGG + chr6_1:6265862-6265881 None:intergenic 50.0%
CCACAAGTTGTGCACTGTCT+AGG + chr6_1:6265919-6265938 None:intergenic 50.0%
CCTAGACAGTGCACAACTTG+TGG - chr6_1:6265916-6265935 Msa0871370:intron 50.0%
CGTCTTGGGATTTGAATCGG+AGG + chr6_1:6265942-6265961 None:intergenic 50.0%
AGCACAGCAGTCACATGGAT+TGG - chr6_1:6265962-6265981 Msa0871370:intron 50.0%
TACGAGAGGGCTTCTGCTTA+CGG + chr6_1:6266017-6266036 None:intergenic 50.0%
AGCAGAAGCCCTCTCGTAAA+TGG - chr6_1:6266019-6266038 Msa0871370:intron 50.0%
GGTTTGTGAGTGAGACGATG+TGG - chr6_1:6266040-6266059 Msa0871370:intron 50.0%
AGTGAGACGATGTGGCTTAG+TGG - chr6_1:6266048-6266067 Msa0871370:intron 50.0%
!! CTTAGTGGTGCAGAGGCATT+GGG - chr6_1:6266063-6266082 Msa0871370:intron 50.0%
GTCTCGGTTGGCAAAAAACC+TGG + chr6_1:6266102-6266121 None:intergenic 50.0%
! TTTTCCTCAGTGGTCTCGGT+TGG + chr6_1:6266114-6266133 None:intergenic 50.0%
ACAGTGATGAAACGGAGGAG+TGG - chr6_1:6266217-6266236 Msa0871370:intron 50.0%
ACGGAGGAGTGGATGTATAG+AGG - chr6_1:6266228-6266247 Msa0871370:intron 50.0%
TGGGGGAGAGATCCAGAATT+CGG - chr6_1:6266639-6266658 Msa0871370:intron 50.0%
AGGTGCCCTGCATACAAAGA+GGG + chr6_1:6266995-6267014 None:intergenic 50.0%
TAGGTGCCCTGCATACAAAG+AGG + chr6_1:6266996-6267015 None:intergenic 50.0%
!! CCAACGAGGATTGATGGTGG+AGG + chr6_1:6261274-6261293 None:intergenic 55.0%
CCTCCACCATCAATCCTCGT+TGG - chr6_1:6261271-6261290 Msa0871370:three_prime_UTR 55.0%
CGACCAACGAGGATTGATGG+TGG + chr6_1:6261277-6261296 None:intergenic 55.0%
ATGGGGTTTACGGCCTATGG+TGG - chr6_1:6262189-6262208 Msa0871370:CDS 55.0%
GTGCGTGTGTGAATGCTACC+TGG - chr6_1:6262459-6262478 Msa0871370:CDS 55.0%
! GTCTGCCTAGGTTTTCTGCG+TGG - chr6_1:6263724-6263743 Msa0871370:CDS 55.0%
CCTTTCACCTGCAACCTGTG+AGG + chr6_1:6264420-6264439 None:intergenic 55.0%
CCTCACAGGTTGCAGGTGAA+AGG - chr6_1:6264417-6264436 Msa0871370:intron 55.0%
!! TGGTCGCGAAAGCCGTTTTC+TGG - chr6_1:6264692-6264711 Msa0871370:CDS 55.0%
GCCTTTGTTAGTTGAGCGGC+TGG - chr6_1:6264841-6264860 Msa0871370:intron 55.0%
!! GCATTGGCTGCAACAGTAGC+AGG + chr6_1:6265016-6265035 None:intergenic 55.0%
TGCTGCGGTTGTTCATGCAC+AGG + chr6_1:6265265-6265284 None:intergenic 55.0%
GTGCATGAACAACCGCAGCA+CGG - chr6_1:6265265-6265284 Msa0871370:intron 55.0%
TGTGACGATGCTGGATCCTG+AGG + chr6_1:6265409-6265428 None:intergenic 55.0%
AGGCCATCTTTGCCAGGACA+TGG - chr6_1:6265439-6265458 Msa0871370:intron 55.0%
CAGGTCGTACATTTGGCAGG+GGG + chr6_1:6265480-6265499 None:intergenic 55.0%
GGCAAAGGGAGTGGCATAAC+AGG + chr6_1:6265499-6265518 None:intergenic 55.0%
GTTATGCCACTCCCTTTGCC+AGG - chr6_1:6265499-6265518 Msa0871370:intron 55.0%
CCGATTCTTTGGCCTGGCAA+AGG + chr6_1:6265514-6265533 None:intergenic 55.0%
TTGCGACCTTTACCTCCACC+TGG - chr6_1:6265565-6265584 Msa0871370:intron 55.0%
TGTAGGCCAGGTGGAGGTAA+AGG + chr6_1:6265574-6265593 None:intergenic 55.0%
GATTGGGATGAGGTGGCATC+TGG + chr6_1:6265606-6265625 None:intergenic 55.0%
GGACTAGGATTGGGATGAGG+TGG + chr6_1:6265613-6265632 None:intergenic 55.0%
! CCAACAGTTGGCTGTTGGCT+TGG + chr6_1:6265643-6265662 None:intergenic 55.0%
CCAAGCCAACAGCCAACTGT+TGG - chr6_1:6265640-6265659 Msa0871370:intron 55.0%
GGCTAATCAAGCCCCTTCAC+AGG - chr6_1:6265711-6265730 Msa0871370:intron 55.0%
GTGACTGCTGTGCTCGTCTT+GGG + chr6_1:6265956-6265975 None:intergenic 55.0%
TGTGACTGCTGTGCTCGTCT+TGG + chr6_1:6265957-6265976 None:intergenic 55.0%
AGACGAGCACAGCAGTCACA+TGG - chr6_1:6265957-6265976 Msa0871370:intron 55.0%
GATGTGGCTTAGTGGTGCAG+AGG - chr6_1:6266056-6266075 Msa0871370:intron 55.0%
! GCTTAGTGGTGCAGAGGCAT+TGG - chr6_1:6266062-6266081 Msa0871370:intron 55.0%
TTTGCCAACCGAGACCACTG+AGG - chr6_1:6266107-6266126 Msa0871370:intron 55.0%
!!! GTATTTTGGTCCTCGTCGGC+CGG + chr6_1:6266162-6266181 None:intergenic 55.0%
GGCATAGACAGGTCGCAGTT+AGG - chr6_1:6266288-6266307 Msa0871370:intron 55.0%
! ATGCAGGGCACCTATGACGA+AGG - chr6_1:6267002-6267021 Msa0871370:CDS 55.0%
TCACCGCGTCTACCCGAAGT+AGG - chr6_1:6263638-6263657 Msa0871370:CDS 60.0%
GGAGTTATGCTGGGAGGACG+TGG + chr6_1:6265148-6265167 None:intergenic 60.0%
GACGATGCTGGATCCTGAGG+TGG + chr6_1:6265406-6265425 None:intergenic 60.0%
CTTTGGCCTGGCAAAGGGAG+TGG + chr6_1:6265508-6265527 None:intergenic 60.0%
AAGGTCGCAAAGCTCCTCCC+TGG + chr6_1:6265555-6265574 None:intergenic 60.0%
! GCATCTGGGATGGAGCGTGT+AGG + chr6_1:6265591-6265610 None:intergenic 60.0%
GGATGAGGTGGCATCTGGGA+TGG + chr6_1:6265601-6265620 None:intergenic 60.0%
TTGGGAGCCGAATCAGCTCC+AGG - chr6_1:6266081-6266100 Msa0871370:intron 60.0%
GATGGAGCGTGTAGGCCAGG+TGG + chr6_1:6265583-6265602 None:intergenic 65.0%
TGGGATGGAGCGTGTAGGCC+AGG + chr6_1:6265586-6265605 None:intergenic 65.0%
GGAGCGTGTAGGCCAGGTGG+AGG + chr6_1:6265580-6265599 None:intergenic 70.0%
GTTGGCTGTTCCGGCCGACG+AGG - chr6_1:6266149-6266168 Msa0871370:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6261059 6267444 6261059 ID=Msa0871370;Name=Msa0871370
chr6_1 mRNA 6261059 6267444 6261059 ID=Msa0871370-mRNA-1;Parent=Msa0871370;Name=Msa0871370-mRNA-1;_AED=0.06;_eAED=0.06;_QI=188|1|1|1|1|1|6|392|840
chr6_1 exon 6261059 6261495 6261059 ID=Msa0871370-mRNA-1:exon:1882;Parent=Msa0871370-mRNA-1
chr6_1 exon 6262126 6262668 6262126 ID=Msa0871370-mRNA-1:exon:1881;Parent=Msa0871370-mRNA-1
chr6_1 exon 6262771 6264078 6262771 ID=Msa0871370-mRNA-1:exon:1880;Parent=Msa0871370-mRNA-1
chr6_1 exon 6264509 6264769 6264509 ID=Msa0871370-mRNA-1:exon:1879;Parent=Msa0871370-mRNA-1
chr6_1 exon 6264848 6264949 6264848 ID=Msa0871370-mRNA-1:exon:1878;Parent=Msa0871370-mRNA-1
chr6_1 exon 6266993 6267444 6266993 ID=Msa0871370-mRNA-1:exon:1877;Parent=Msa0871370-mRNA-1
chr6_1 five_prime_UTR 6267257 6267444 6267257 ID=Msa0871370-mRNA-1:five_prime_utr;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6266993 6267256 6266993 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6264848 6264949 6264848 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6264509 6264769 6264509 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6262771 6264078 6262771 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6262126 6262668 6262126 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 CDS 6261451 6261495 6261451 ID=Msa0871370-mRNA-1:cds;Parent=Msa0871370-mRNA-1
chr6_1 three_prime_UTR 6261059 6261450 6261059 ID=Msa0871370-mRNA-1:three_prime_utr;Parent=Msa0871370-mRNA-1
Gene Sequence

>Msa0871370

ATGAGCAATGAGATTGTTCAGAAACCTCCACCATCAATCCTCGTTGGTCGATTCAAGGCTTTGTTGAATCAACGTCGTGAAGAAGATCCTAGGTTGAGAAATTCGCAACCTTCAACGGAAGAAATTGTTCAGATTTACGAGCTTTTGTTGTCTGAACTCACGTGTAATGTTAAACCTATCATCACTGATCTTACTATCATTGCTGAACAACATCGTAATCATGCTAAAGGAATCGCTTTTGCTATTTGCAACCGTATTGTTGAGGTGTCTGCAGATCAAAAGCTACCTTCACTCTATCTCTTGGACAGTATTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCACCGCGTCTACCCGAAGTTTTCTGCGTGGCATACAGACAAGTTGATCCAAGTTTACATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCTTCTGTCTTACGGAAGATTGACGTGGAATTGCAATTTTCTAAACCAGTTAATAATCAACCATCAGGCGTTAATTCCCTTAGGGCTTCTGAATCTCCTCGACCTACTCATGGGATACATGTTAACCCAAGATACGTAAGACAAATAGAACACTCTACTTCAGTTATTGATAGTGTTGCAGGTGAAAGGTTAGACTCAACAGGAACTGTTGGAAATGCAAATTTCGGTCTTCTTGCTAGTAAGATTAATCAATTTGTCCCAAGTAGGGTTGGAAGATCTTCGTCACCACCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATTTAGCTGACAATTCCACTGGTAGGACAGTTGAGAGAGAATCTCCCCATCATGCTGTTGATTATGGCCTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGAGTGAGTGGTCGCGAAAGCCGTTTTCTGGTGATAGTCGGAAGAGATTTCAAACTTCTATGACATATAGCCTTAGTAACGGACAACCACGTCAAAATCCAAGAGCACTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTATGACAACATCATGGCAGAATACTGAAGAAGAGGAGTTCGATTGGGAAGATATGAGTCCGACAGTAGTAGACCATGGTAGAAGTAATGGTTTCCTGCAACCAACTATTGGTTTCTCATCAGAAAAGCCTGCTACTGTTGCAGCCAATGCAACTTCTTCAGTGTCAAGGGTGTTTCCTGGTCTCAATTCAAATATTGAGTACCGTCCAACAGTTTTGCCTGCAGCTTTTGAAATGAGGCATTCCGTAAATGTGCATGCTCCACGTCCTCCCAGCATAACTCCTATATTTCCATCGAAGAATCCTGTTAGGAATCCATTCGAATCAATAAATGCCAATAGTACCATTGTGAGTCATGGTCTAATCAATAGACCTTTTCCTGTGCATGAACAACCGCAGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACCTGTATCAGCTACCTAATCAGCTTCCTGGTCTGATTTCATCTAACCCGCCAAACAGTGTACAAACACCGTCATTCCAGTTTTTTCCACCTCAGGATCCAGCATCGTCACAATTTACTTATAGGCCATCTTTGCCAGGACATGGTCATGCTATGAGTAACCCCCTGCCAAATGTACGACCTGTTATGCCACTCCCTTTGCCAGGCCAAAGAATCGGAAACAACTCTTTTCATTTCCAGGGAGGAGCTTTGCGACCTTTACCTCCACCTGGCCTACACGCTCCATCCCAGATGCCACCTCATCCCAATCCTAGTCCATTTGTACCAAGCCAACAGCCAACTGTTGGATATTCTAATTTGATTAATTCACTTATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTTCACAGGATTTTGTTGGCATTGAGTTTGATCCAGACACTCTGAAGGTTCGTCATGAATCTGCAATCAGTGCCTTATACGGTAATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGACGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAGCCCTCTCGTAAATGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCCGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCTGTTCCGGCCGACGAGGACCAAAATACATGTGCATTATGTGGAGAACCTTTTGAGGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAACAACAGGCATAGACAGGTCGCAGTTAGGCCCCATTATTCATGCTAAATGCAGATCTGAATCTACCCCGTCTGAAGATTTTGTGATGGACGAAGGGGGCACCTATGACGAAGGCAGTCAAAGAAAACGAATGCGGAGCTGA
Protein sequence

>Msa0871370

MSNEIVQKPPPSILVGRFKALLNQRREEDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHRNHAKGIAFAICNRIVEVSADQKLPSLYLLDSIVKNVGQEYVRYFSPRLPEVFCVAYRQVDPSLHSAMRHLFGTWSKVFPPSVLRKIDVELQFSKPVNNQPSGVNSLRASESPRPTHGIHVNPRYVRQIEHSTSVIDSVAGERLDSTGTVGNANFGLLASKINQFVPSRVGRSSSPPRIGLDRHMPSYMDEYLADNSTGRTVERESPHHAVDYGLVKGLGREEELSEWSRKPFSGDSRKRFQTSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVMTTSWQNTEEEEFDWEDMSPTVVDHGRSNGFLQPTIGFSSEKPATVAANATSSVSRVFPGLNSNIEYRPTVLPAAFEMRHSVNVHAPRPPSITPIFPSKNPVRNPFESINANSTIVSHGLINRPFPVHEQPQHGVENNDINKRNLYQLPNQLPGLISSNPPNSVQTPSFQFFPPQDPASSQFTYRPSLPGHGHAMSNPLPNVRPVMPLPLPGQRIGNNSFHFQGGALRPLPPPGLHAPSQMPPHPNPSPFVPSQQPTVGYSNLINSLMAQGVISLANQAPSQDFVGIEFDPDTLKVRHESAISALYGNLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNAPNGITTGIDRSQLGPIIHAKCRSESTPSEDFVMDEGGTYDEGSQRKRMRS*