AlfalfaGEDB | Msa0871670

M. sativa cultivar zhongmu-4 / Msa0871670

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871670	KEH24990.1	91.422	443	30	1	1	443	1	435	0.0	811

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871670	sp\|F4J0D2\|PBL36_ARATH	54.545	440	168	10	2	422	38	464	2.77e-153	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871670	A0A072UGS2	91.422	443	30	1	1	443	1	435	0.0	811

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871670	MtrunA17_Chr3g0104091	92.029	414	33	0	31	444	9	422	0.0	763
Msa0871670	MtrunA17_Chr6g0453001	91.063	414	29	1	30	443	17	422	0.0	751
Msa0871670	MtrunA17_Chr8g0362661	56.728	379	140	3	4	360	41	417	1.19e-150	437
Msa0871670	MtrunA17_Chr5g0416011	51.204	457	190	6	4	438	43	488	2.56e-149	434
Msa0871670	MtrunA17_Chr7g0216551	63.497	326	113	3	40	360	83	407	6.94e-149	432
Msa0871670	MtrunA17_Chr6g0452761	59.375	352	135	3	15	360	67	416	4.87e-141	412
Msa0871670	MtrunA17_Chr4g0064201	56.695	351	149	3	15	365	51	398	5.34e-140	408
Msa0871670	MtrunA17_Chr2g0328171	58.308	331	131	4	35	360	31	359	2.71e-139	405
Msa0871670	MtrunA17_Chr7g0238671	63.279	305	108	3	58	360	56	358	1.31e-138	403
Msa0871670	MtrunA17_Chr7g0245571	61.589	302	111	3	57	358	73	369	5.98e-134	392

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0871670	AT3G28690.2	54.545	440	168	10	2	422	38	464	2.81e-154	446
Msa0871670	AT3G01300.1	57.713	376	138	5	4	360	46	419	2.44e-149	434
Msa0871670	AT3G28690.1	59.677	372	135	7	54	422	5	364	1.44e-148	427
Msa0871670	AT3G28690.3	58.747	383	142	8	44	422	43	413	3.27e-148	429
Msa0871670	AT5G15080.1	51.685	445	182	7	4	423	46	482	2.41e-147	429
Msa0871670	AT2G28930.1	55.372	363	156	4	4	364	11	369	3.54e-138	403
Msa0871670	AT1G07570.1	56.704	358	149	4	14	367	5	360	1.20e-137	401
Msa0871670	AT1G07570.5	56.704	358	149	4	14	367	5	360	1.20e-137	401
Msa0871670	AT1G07570.2	56.704	358	149	4	14	367	5	360	1.20e-137	401
Msa0871670	AT2G28930.2	62.338	308	112	3	59	364	53	358	6.00e-137	399

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Find 110 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATAGACATCACTCT+TGG	0.527295	6_1:+6617163	None:intergenic
AAAGGAGGAGTAAAGTTCAA+TGG	0.508200	6_1:+6616681	None:intergenic
AAAGGCTGGATAGGTCTAAA+TGG	0.299316	6_1:-6619367	Msa0871670:CDS
AACGATAATGGCGATGGCAT+TGG	0.460179	6_1:+6616846	None:intergenic
AACTATCTTCATTGCTTTGT+AGG	0.331226	6_1:+6616971	None:intergenic
AAGAGACTGAAAATTATGCT+TGG	0.559894	6_1:-6618258	Msa0871670:CDS
AAGAGTGATGTCTATAGCTT+TGG	0.427331	6_1:-6617161	Msa0871670:CDS
AAGGCTGGATAGGTCTAAAT+GGG	0.501974	6_1:-6619366	Msa0871670:CDS
AATAAATACGGTCCTACAAT+TGG	0.419049	6_1:-6616756	Msa0871670:CDS
AATGCAAAACTTTCTGACTT+TGG	0.359113	6_1:-6618058	Msa0871670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAACTCAAACAAGATTGG+TGG	+	chr6_1:6616770-6616789	None:intergenic	30.0%
GACATAAACTCAAACAAGAT+TGG	+	chr6_1:6616773-6616792	None:intergenic	30.0%
CTCGATACATTTCACAAAAT+TGG	-	chr6_1:6616848-6616867	Msa0871670:CDS	30.0%
TATAAGCATGATTTGAACCT+AGG	-	chr6_1:6616958-6616977	Msa0871670:CDS	30.0%
ATAAGCATGATTTGAACCTA+GGG	-	chr6_1:6616959-6616978	Msa0871670:CDS	30.0%
AAAACAACAATTGTAACCCT+AGG	+	chr6_1:6616978-6616997	None:intergenic	30.0%
ACTTCAAAATTAGGGATTCA+AGG	-	chr6_1:6617038-6617057	Msa0871670:CDS	30.0%
CTTCAAAATTAGGGATTCAA+GGG	-	chr6_1:6617039-6617058	Msa0871670:CDS	30.0%
TCCTTATGAAAAAGATCAGA+GGG	+	chr6_1:6617546-6617565	None:intergenic	30.0%
TTCCTTATGAAAAAGATCAG+AGG	+	chr6_1:6617547-6617566	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	6616644	6621122	6616644	ID=Msa0871670;Name=Msa0871670
chr6_1	mRNA	6616644	6621122	6616644	ID=Msa0871670-mRNA-1;Parent=Msa0871670;Name=Msa0871670-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|6\|0\|444
chr6_1	exon	6621035	6621122	6621035	ID=Msa0871670-mRNA-1:exon:2100;Parent=Msa0871670-mRNA-1
chr6_1	exon	6619279	6619571	6619279	ID=Msa0871670-mRNA-1:exon:2099;Parent=Msa0871670-mRNA-1
chr6_1	exon	6618691	6618826	6618691	ID=Msa0871670-mRNA-1:exon:2098;Parent=Msa0871670-mRNA-1
chr6_1	exon	6618167	6618306	6618167	ID=Msa0871670-mRNA-1:exon:2097;Parent=Msa0871670-mRNA-1
chr6_1	exon	6617963	6618086	6617963	ID=Msa0871670-mRNA-1:exon:2096;Parent=Msa0871670-mRNA-1
chr6_1	exon	6616644	6617197	6616644	ID=Msa0871670-mRNA-1:exon:2095;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6621035	6621122	6621035	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6619279	6619571	6619279	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6618691	6618826	6618691	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6618167	6618306	6618167	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6617963	6618086	6617963	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1
chr6_1	CDS	6616644	6617197	6616644	ID=Msa0871670-mRNA-1:cds;Parent=Msa0871670-mRNA-1

Gene Sequence

>Msa0871670

ATGGCAAATTCAGGATTTTGGATGAAGGTCAAGTTTTTATTTAGTTGCATGTCCAAAAGCTCATCTCGTGGCAAGCACACACAAAATGATGATAAGGTCATTGTTGGTGCTCAAAATTCTTCAACCAGCAGTAACACAAGATCACCAACTCCCGATGGTGTACATTATTATTCCAATCTTAACCAATTCACGTACCAAGAACTTAAGTCAGCAACAGGACATTTCGCACCAGAATGTTTTCTCGGTGAGGGTGGATTTGGTTCTGTGTATAAAGGCTGGATAGGTCTAAATGGGAGGATTTCTTCAAGACCTGGAATGGGGGTACCTGTTGCTGTAAAAACTTTAAACAAAGAAGGAAATCAAGGGCACAAAGAATGGCTGGCTGAAATTAACCATCTTGGTGCTCTTCAGCATCCAAATCTGGTTAGACTTGTTGGTTACTGCATTGAAGATGAAAATAGGCTGCTTGTTTATGAGTTCATGCCAAAAGGAAGTTTGGAAAATCATCTATTTAAGAGACGATCTGTACCCCTTACATGGGCTAAGAGACTGAAAATTATGCTTGGTGCTGCAAAAGGTCTTGCATTTCTGCATGAGGAAGCTGAGAAGCCAATCATATATAGAGATTTCAAAACTTCTAATATCCTATTGGATTCGGAATATAATGCAAAACTTTCTGACTTTGGACTTGCTAAGGATGGTCCAACGGGAGACAAAACACATGTGTCAACACAAGTAATAGGAACTCAAGGGTATGCTGATCCTGAATATGTCATGACAGGGCACCTTAGTTCCAAGAGTGATGTCTATAGCTTTGGCGTGGTTCTTCTAGAGATGTTAACCGGAAGGAAAGCCATTGATCGGAAAAGGCCGCAGAATGAACAAACCTTGATTGAATGGGTAAAACCCTTCTTAAAAAAACCTGGAGGAGGGTTCTGTGAAGTGATGGATCCGAGATTTCAAGAACAATATTCAAAAAGGGGAGCCTACAAAGCAATGAAGATAGTTGCGCAATGTGTTTACCGTGATAAAAGAGCAAGGCCTTTAATGAGTGAAGTTGTCAAGGAGCTCAAAACTATCATTGATTACAACAATGATATTCCTTGCTCACCAATGCCATCGCCATTATCGTTTAAGGTCTTGCATGATGGCGCTTCCTCTTCAAATTCCTCTAGACATGTTGGTGGCGGCAGCGGTGCTAATAAATACGGTCCTACAATTGGTTCATCATCTTCGGCTTCAACTCCATCAACTCCAGCTCGATTTCAAGGTTCACCATTGAACTTTACTCCTCCTTTACTTTCACCGATTCCTCCTCGTGGTGGAAATCCATGA

Protein sequence

>Msa0871670

MANSGFWMKVKFLFSCMSKSSSRGKHTQNDDKVIVGAQNSSTSSNTRSPTPDGVHYYSNLNQFTYQELKSATGHFAPECFLGEGGFGSVYKGWIGLNGRISSRPGMGVPVAVKTLNKEGNQGHKEWLAEINHLGALQHPNLVRLVGYCIEDENRLLVYEFMPKGSLENHLFKRRSVPLTWAKRLKIMLGAAKGLAFLHEEAEKPIIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKTHVSTQVIGTQGYADPEYVMTGHLSSKSDVYSFGVVLLEMLTGRKAIDRKRPQNEQTLIEWVKPFLKKPGGGFCEVMDPRFQEQYSKRGAYKAMKIVAQCVYRDKRARPLMSEVVKELKTIIDYNNDIPCSPMPSPLSFKVLHDGASSSNSSRHVGGGSGANKYGPTIGSSSSASTPSTPARFQGSPLNFTPPLLSPIPPRGGNP*