Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871680 | XP_013450953.1 | 97.842 | 278 | 5 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871680 | sp|Q00466|HAT7_ARATH | 52.027 | 296 | 102 | 11 | 1 | 271 | 22 | 302 | 9.31e-82 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871680 | A0A072U5Q1 | 97.842 | 278 | 5 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0871680 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871680 | MtrunA17_Chr6g0453021 | 97.842 | 278 | 5 | 1 | 1 | 278 | 1 | 277 | 0.0 | 561 |
| Msa0871680 | MtrunA17_Chr7g0217111 | 58.904 | 292 | 78 | 10 | 1 | 270 | 1 | 272 | 9.59e-105 | 305 |
| Msa0871680 | MtrunA17_Chr8g0362151 | 50.166 | 301 | 100 | 9 | 1 | 273 | 1 | 279 | 1.27e-78 | 239 |
| Msa0871680 | MtrunA17_Chr5g0416391 | 52.941 | 255 | 78 | 6 | 49 | 273 | 38 | 280 | 1.91e-70 | 218 |
| Msa0871680 | MtrunA17_Chr3g0119291 | 45.960 | 198 | 92 | 4 | 83 | 266 | 42 | 238 | 3.44e-40 | 140 |
| Msa0871680 | MtrunA17_Chr5g0415941 | 44.215 | 242 | 93 | 10 | 42 | 260 | 39 | 261 | 6.45e-40 | 141 |
| Msa0871680 | MtrunA17_Chr8g0381741 | 60.748 | 107 | 41 | 1 | 87 | 192 | 43 | 149 | 4.78e-37 | 133 |
| Msa0871680 | MtrunA17_Chr6g0450991 | 64.000 | 100 | 36 | 0 | 93 | 192 | 63 | 162 | 1.34e-36 | 131 |
| Msa0871680 | MtrunA17_Chr3g0123691 | 54.032 | 124 | 48 | 1 | 78 | 192 | 32 | 155 | 6.97e-36 | 130 |
| Msa0871680 | MtrunA17_Chr8g0362751 | 68.750 | 96 | 30 | 0 | 97 | 192 | 89 | 184 | 8.77e-36 | 129 |
| Msa0871680 | MtrunA17_Chr4g0060031 | 57.143 | 112 | 48 | 0 | 81 | 192 | 79 | 190 | 1.53e-34 | 127 |
| Msa0871680 | MtrunA17_Chr7g0265521 | 55.435 | 92 | 41 | 0 | 96 | 187 | 62 | 153 | 3.33e-28 | 108 |
| Msa0871680 | MtrunA17_Chr3g0127511 | 56.044 | 91 | 40 | 0 | 99 | 189 | 40 | 130 | 6.87e-28 | 107 |
| Msa0871680 | MtrunA17_Chr1g0179581 | 60.494 | 81 | 32 | 0 | 96 | 176 | 27 | 107 | 1.55e-26 | 100 |
| Msa0871680 | MtrunA17_Chr8g0346251 | 53.488 | 86 | 40 | 0 | 104 | 189 | 48 | 133 | 1.73e-25 | 101 |
| Msa0871680 | MtrunA17_Chr4g0055851 | 46.154 | 104 | 55 | 1 | 81 | 184 | 105 | 207 | 2.39e-20 | 88.2 |
| Msa0871680 | MtrunA17_Chr5g0403701 | 51.579 | 95 | 46 | 0 | 97 | 191 | 53 | 147 | 9.32e-20 | 85.1 |
| Msa0871680 | MtrunA17_Chr5g0403691 | 51.064 | 94 | 46 | 0 | 97 | 190 | 53 | 146 | 1.97e-19 | 84.3 |
| Msa0871680 | MtrunA17_Chr2g0308611 | 42.276 | 123 | 48 | 2 | 84 | 190 | 171 | 286 | 7.66e-18 | 82.0 |
| Msa0871680 | MtrunA17_Chr5g0400781 | 46.154 | 104 | 49 | 1 | 87 | 190 | 113 | 209 | 1.32e-17 | 80.5 |
| Msa0871680 | MtrunA17_Chr7g0258831 | 39.726 | 146 | 77 | 3 | 45 | 190 | 112 | 246 | 1.55e-17 | 80.9 |
| Msa0871680 | MtrunA17_Chr5g0399491 | 46.000 | 100 | 53 | 1 | 85 | 184 | 125 | 223 | 1.94e-17 | 80.5 |
| Msa0871680 | MtrunA17_Chr1g0151971 | 50.000 | 94 | 40 | 1 | 97 | 190 | 130 | 216 | 6.99e-17 | 78.6 |
| Msa0871680 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 100 | 190 | 91 | 174 | 9.52e-17 | 77.0 |
| Msa0871680 | MtrunA17_Chr4g0054421 | 45.192 | 104 | 49 | 2 | 87 | 190 | 118 | 213 | 1.01e-16 | 78.2 |
| Msa0871680 | MtrunA17_Chr8g0335131 | 48.864 | 88 | 45 | 0 | 97 | 184 | 146 | 233 | 1.04e-16 | 78.6 |
| Msa0871680 | MtrunA17_Chr1g0175651 | 44.348 | 115 | 51 | 3 | 76 | 190 | 139 | 240 | 1.29e-16 | 78.2 |
| Msa0871680 | MtrunA17_Chr4g0044091 | 50.000 | 88 | 44 | 0 | 97 | 184 | 65 | 152 | 4.90e-16 | 74.7 |
| Msa0871680 | MtrunA17_Chr3g0135331 | 38.136 | 118 | 58 | 2 | 97 | 199 | 145 | 262 | 9.41e-14 | 70.1 |
| Msa0871680 | MtrunA17_Chr2g0299031 | 43.182 | 88 | 50 | 0 | 97 | 184 | 82 | 169 | 1.79e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0871680 | AT5G15150.1 | 52.027 | 296 | 102 | 11 | 1 | 271 | 22 | 302 | 9.46e-83 | 251 |
| Msa0871680 | AT3G01220.1 | 48.611 | 288 | 103 | 10 | 1 | 271 | 16 | 275 | 1.49e-78 | 239 |
| Msa0871680 | AT1G69780.1 | 45.603 | 307 | 115 | 9 | 1 | 275 | 7 | 293 | 9.32e-68 | 212 |
| Msa0871680 | AT1G26960.1 | 50.235 | 213 | 86 | 5 | 74 | 275 | 51 | 254 | 6.11e-59 | 188 |
| Msa0871680 | AT5G65310.2 | 55.469 | 128 | 50 | 1 | 92 | 212 | 49 | 176 | 3.30e-39 | 139 |
| Msa0871680 | AT5G65310.1 | 52.448 | 143 | 57 | 2 | 81 | 212 | 52 | 194 | 4.01e-39 | 139 |
| Msa0871680 | AT2G22430.1 | 64.078 | 103 | 37 | 0 | 90 | 192 | 55 | 157 | 1.59e-38 | 137 |
| Msa0871680 | AT4G40060.1 | 63.636 | 99 | 36 | 0 | 94 | 192 | 56 | 154 | 8.10e-38 | 135 |
| Msa0871680 | AT3G01470.1 | 62.000 | 100 | 38 | 0 | 93 | 192 | 64 | 163 | 2.43e-37 | 133 |
| Msa0871680 | AT2G46680.1 | 55.319 | 94 | 42 | 0 | 98 | 191 | 33 | 126 | 5.63e-29 | 111 |
| Msa0871680 | AT3G61890.1 | 55.556 | 90 | 40 | 0 | 100 | 189 | 33 | 122 | 3.57e-27 | 105 |
| Msa0871680 | AT1G27045.1 | 35.814 | 215 | 98 | 6 | 9 | 217 | 12 | 192 | 5.70e-27 | 105 |
| Msa0871680 | AT2G46680.2 | 54.545 | 88 | 40 | 0 | 98 | 185 | 33 | 120 | 1.68e-26 | 104 |
| Msa0871680 | AT1G27045.5 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 9.07e-26 | 100 |
| Msa0871680 | AT1G27045.3 | 46.400 | 125 | 63 | 1 | 97 | 217 | 25 | 149 | 9.07e-26 | 100 |
| Msa0871680 | AT1G27045.2 | 46.400 | 125 | 63 | 1 | 97 | 217 | 17 | 141 | 1.03e-25 | 100 |
| Msa0871680 | AT1G27045.4 | 37.297 | 185 | 80 | 5 | 9 | 191 | 12 | 162 | 2.31e-25 | 101 |
| Msa0871680 | AT5G03790.1 | 46.847 | 111 | 56 | 2 | 97 | 205 | 77 | 186 | 7.97e-24 | 97.1 |
| Msa0871680 | AT2G18550.1 | 43.357 | 143 | 64 | 3 | 97 | 222 | 61 | 203 | 1.55e-22 | 93.2 |
| Msa0871680 | AT2G36610.1 | 44.348 | 115 | 53 | 3 | 96 | 199 | 70 | 184 | 3.54e-22 | 91.3 |
| Msa0871680 | AT5G03790.2 | 49.462 | 93 | 40 | 1 | 97 | 189 | 77 | 162 | 4.54e-22 | 91.3 |
| Msa0871680 | AT4G36740.2 | 52.222 | 90 | 43 | 0 | 97 | 186 | 56 | 145 | 7.30e-21 | 88.6 |
| Msa0871680 | AT4G36740.1 | 52.222 | 90 | 43 | 0 | 97 | 186 | 55 | 144 | 7.84e-21 | 88.6 |
| Msa0871680 | AT5G66700.1 | 47.573 | 103 | 52 | 1 | 86 | 186 | 58 | 160 | 6.65e-20 | 86.3 |
| Msa0871680 | AT5G53980.1 | 46.000 | 100 | 54 | 0 | 88 | 187 | 2 | 101 | 7.49e-20 | 84.3 |
| Msa0871680 | AT2G01430.1 | 45.045 | 111 | 53 | 2 | 80 | 190 | 123 | 225 | 1.11e-18 | 84.0 |
| Msa0871680 | AT4G37790.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 118 | 212 | 7.21e-18 | 81.6 |
| Msa0871680 | AT2G22800.1 | 47.115 | 104 | 46 | 2 | 87 | 190 | 105 | 199 | 3.58e-17 | 79.7 |
| Msa0871680 | AT5G47370.1 | 41.322 | 121 | 56 | 2 | 81 | 190 | 103 | 219 | 3.61e-17 | 79.7 |
| Msa0871680 | AT4G17460.1 | 46.667 | 105 | 51 | 2 | 87 | 190 | 124 | 224 | 5.74e-17 | 79.3 |
| Msa0871680 | AT3G60390.1 | 41.322 | 121 | 69 | 2 | 64 | 184 | 131 | 249 | 7.55e-17 | 79.3 |
| Msa0871680 | AT5G06710.1 | 35.673 | 171 | 100 | 3 | 70 | 234 | 161 | 327 | 1.23e-16 | 79.0 |
| Msa0871680 | AT2G44910.1 | 46.591 | 88 | 47 | 0 | 97 | 184 | 163 | 250 | 2.06e-15 | 75.5 |
| Msa0871680 | AT4G16780.1 | 43.878 | 98 | 53 | 1 | 87 | 184 | 121 | 216 | 4.81e-15 | 73.9 |
| Msa0871680 | AT1G70920.1 | 48.864 | 88 | 45 | 0 | 97 | 184 | 69 | 156 | 2.91e-14 | 70.5 |
| Msa0871680 | AT1G70920.2 | 48.864 | 88 | 45 | 0 | 97 | 184 | 39 | 126 | 3.50e-14 | 69.7 |
| Msa0871680 | AT2G01430.2 | 48.571 | 70 | 35 | 1 | 80 | 149 | 123 | 191 | 1.82e-12 | 65.5 |
| Msa0871680 | AT5G06710.4 | 44.444 | 81 | 43 | 1 | 70 | 148 | 161 | 241 | 8.65e-11 | 61.6 |
Find 77 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTTGCTCTTCTATTT+TGG | 0.086155 | 6_1:+6642268 | None:intergenic |
| CAAAATATTAGATTTGAATT+TGG | 0.155547 | 6_1:+6640193 | None:intergenic |
| TTGATGAGCAGCAGAGTTTA+TGG | 0.202182 | 6_1:-6640447 | Msa0871680:CDS |
| AAAAGGGATTGCTTTGAAAA+TGG | 0.232266 | 6_1:-6640655 | Msa0871680:CDS |
| GTGTGAATACAACATGAATT+TGG | 0.268969 | 6_1:-6640099 | Msa0871680:three_prime_UTR |
| ATGCAATTGGCTAAAGCTTT+GGG | 0.280624 | 6_1:-6642321 | Msa0871680:CDS |
| ATCCTTTCTTCGAGTCTTAA+CGG | 0.311677 | 6_1:+6640395 | None:intergenic |
| CCACCTCATCAACACTTTCA+AGG | 0.311971 | 6_1:-6642907 | Msa0871680:intron |
| CTTGTAGGCTTAAGTGAATT+TGG | 0.316425 | 6_1:+6640544 | None:intergenic |
| AGCAGCAGAGTTTATGGCCT+TGG | 0.338430 | 6_1:-6640441 | Msa0871680:CDS |
| GAAGCAATTTGATTCTCTTA+AGG | 0.348897 | 6_1:-6642208 | Msa0871680:CDS |
| CAATTTATGTTTGTGTAGAT+TGG | 0.354618 | 6_1:-6640003 | Msa0871680:three_prime_UTR |
| ACAGATAGAGAGAGAGAATA+AGG | 0.356776 | 6_1:+6643349 | None:intergenic |
| GTGAACATCAATGAATATTT+CGG | 0.362591 | 6_1:-6640300 | Msa0871680:three_prime_UTR |
| TCTTCGAGTCTTAACGGAAT+TGG | 0.375678 | 6_1:+6640401 | None:intergenic |
| AATGCAATTGGCTAAAGCTT+TGG | 0.380110 | 6_1:-6642322 | Msa0871680:CDS |
| CTGATCTTGAAGAGCATTGA+AGG | 0.381692 | 6_1:+6640509 | None:intergenic |
| AACCTAGACAAGTAGCTATA+TGG | 0.403297 | 6_1:-6642293 | Msa0871680:CDS |
| AGGAGCTGTGTCATGCTTGT+AGG | 0.404646 | 6_1:+6640529 | None:intergenic |
| TTTACATTTGTTTGGATAGT+CGG | 0.405622 | 6_1:-6640154 | Msa0871680:three_prime_UTR |
| GAAACAGAAAATGACCCTTA+TGG | 0.416567 | 6_1:-6643126 | Msa0871680:five_prime_UTR |
| TGCAAGCAATTTCCAACTAC+AGG | 0.423006 | 6_1:+6640267 | None:intergenic |
| TTGCATTCACTCACTCAATC+AGG | 0.424741 | 6_1:-6640249 | Msa0871680:three_prime_UTR |
| AGCTACAAACTCTAAAGAAA+AGG | 0.434526 | 6_1:-6640672 | Msa0871680:CDS |
| GGTATAGCTATAAAGCCATA+AGG | 0.436155 | 6_1:+6643111 | None:intergenic |
| TGAAGAAGGGTACTCACAAA+TGG | 0.439119 | 6_1:-6642433 | Msa0871680:CDS |
| TTCTTCTTCAACTTCTACCA+TGG | 0.441834 | 6_1:-6643034 | Msa0871680:exon |
| TTCCGTTAAGACTCGAAGAA+AGG | 0.456253 | 6_1:-6640397 | Msa0871680:exon |
| AGTGGTCATTCAATCAAGAT+AGG | 0.463644 | 6_1:-6640221 | Msa0871680:three_prime_UTR |
| GGCTGATAATGACACACTTA+AGG | 0.472252 | 6_1:-6642187 | Msa0871680:CDS |
| GGATCCGACTCCCCTGTAGT+TGG | 0.476844 | 6_1:-6640279 | Msa0871680:three_prime_UTR |
| TGTTGATGAGGTGGAAAGGA+AGG | 0.483232 | 6_1:+6642916 | None:intergenic |
| GCTACAAACTCTAAAGAAAA+GGG | 0.494292 | 6_1:-6640671 | Msa0871680:CDS |
| GATCAATTATCAGATGAAGA+AGG | 0.500107 | 6_1:-6642447 | Msa0871680:CDS |
| ATGAGGTGGAAAGGAAGGAT+AGG | 0.501061 | 6_1:+6642921 | None:intergenic |
| GTGAATTTGGTGTTCTAGCA+AGG | 0.521667 | 6_1:+6640557 | None:intergenic |
| AATGAAGGTTCTTGGAGCAA+TGG | 0.528783 | 6_1:-6640610 | Msa0871680:CDS |
| CACATTCGAGACATCGGTGG+TGG | 0.535177 | 6_1:+6640119 | None:intergenic |
| GTATAGCTATAAAGCCATAA+GGG | 0.536241 | 6_1:+6643112 | None:intergenic |
| CTCTATGCCTGAAAATGACA+TGG | 0.537665 | 6_1:+6642521 | None:intergenic |
| GCTGGTACTGATATGATGAT+AGG | 0.541839 | 6_1:+6643292 | None:intergenic |
| GAAGAAGGGTACTCACAAAT+GGG | 0.542302 | 6_1:-6642432 | Msa0871680:CDS |
| GTGACAGAGTATTCAGAAAG+AGG | 0.542714 | 6_1:+6643265 | None:intergenic |
| TCAAGATCAGATCTTCAAGA+TGG | 0.543815 | 6_1:-6640496 | Msa0871680:CDS |
| TAGTATATAGTATAATATAG+AGG | 0.546588 | 6_1:+6643174 | None:intergenic |
| TATTCAGAAAGAGGGATGGC+TGG | 0.547505 | 6_1:+6643274 | None:intergenic |
| ATCAATTATCAGATGAAGAA+GGG | 0.550627 | 6_1:-6642446 | Msa0871680:CDS |
| GAGTTTGGCTCTCACTCTCA+TGG | 0.565301 | 6_1:+6643243 | None:intergenic |
| TGCAATTGGCTAAAGCTTTG+GGG | 0.570828 | 6_1:-6642320 | Msa0871680:CDS |
| AACCATATAGCTACTTGTCT+AGG | 0.577432 | 6_1:+6642291 | None:intergenic |
| AAGATGAAAGTATGAGAAGG+TGG | 0.578267 | 6_1:+6643006 | None:intergenic |
| ATTTCCAACTACAGGGGAGT+CGG | 0.587667 | 6_1:+6640275 | None:intergenic |
| TATTAGAATTATTCATGCAA+AGG | 0.590726 | 6_1:+6643090 | None:intergenic |
| TAGAGAGAGAGAATAAGGAG+AGG | 0.593214 | 6_1:+6643354 | None:intergenic |
| ATTGTAGGTAGTGGAAGTAA+TGG | 0.594104 | 6_1:-6642570 | Msa0871680:intron |
| AAATGGGTGAAAAGAAGAAG+AGG | 0.594234 | 6_1:-6642416 | Msa0871680:CDS |
| TGAAAGATGAAAGTATGAGA+AGG | 0.596872 | 6_1:+6643003 | None:intergenic |
| GCAAGCAATTTCCAACTACA+GGG | 0.602531 | 6_1:+6640268 | None:intergenic |
| CCTTGAAAGTGTTGATGAGG+TGG | 0.603326 | 6_1:+6642907 | None:intergenic |
| AAACAACAAATTACATGCAG+AGG | 0.604512 | 6_1:-6642160 | Msa0871680:intron |
| GTCATTCAATCAAGATAGGA+CGG | 0.607094 | 6_1:-6640217 | Msa0871680:three_prime_UTR |
| AATCTATTTGAGTCATGAAG+AGG | 0.607100 | 6_1:-6639963 | Msa0871680:three_prime_UTR |
| TATTCACACATTCGAGACAT+CGG | 0.613281 | 6_1:+6640113 | None:intergenic |
| GTAGGTAGTGGAAGTAATGG+TGG | 0.615975 | 6_1:-6642567 | Msa0871680:intron |
| TGACAGAGTATTCAGAAAGA+GGG | 0.620131 | 6_1:+6643266 | None:intergenic |
| ATGAGAAGGTGGAAAAGCCA+TGG | 0.623402 | 6_1:+6643017 | None:intergenic |
| CTATTTGAGTCATGAAGAGG+TGG | 0.625626 | 6_1:-6639960 | Msa0871680:three_prime_UTR |
| TGACCTTGAAAGTGTTGATG+AGG | 0.642298 | 6_1:+6642904 | None:intergenic |
| GGTTCCAAAATAGAAGAGCA+AGG | 0.645595 | 6_1:-6642272 | Msa0871680:CDS |
| AAAGTGTTGATGAGGTGGAA+AGG | 0.650161 | 6_1:+6642912 | None:intergenic |
| AGAGTATTCAGAAAGAGGGA+TGG | 0.662604 | 6_1:+6643270 | None:intergenic |
| AAGTGTGATGAATTAGTGCA+TGG | 0.667963 | 6_1:-6642477 | Msa0871680:CDS |
| TCACTCAATCAGGATATCAG+TGG | 0.680510 | 6_1:-6640239 | Msa0871680:three_prime_UTR |
| TGTTGCTGATGATCAGTCCA+AGG | 0.684041 | 6_1:+6640424 | None:intergenic |
| TCACACATTCGAGACATCGG+TGG | 0.713620 | 6_1:+6640116 | None:intergenic |
| TCCAAAATAGAAGAGCAAGG+TGG | 0.719995 | 6_1:-6642269 | Msa0871680:CDS |
| CAAGCAATTTCCAACTACAG+GGG | 0.720762 | 6_1:+6640269 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAATAAATTGTATTTTT+TGG | - | chr6_1:6641502-6641521 | Msa0871680:intron | 10.0% |
| !! | ATCAAAATAAAATAAAAGTT+TGG | + | chr6_1:6641772-6641791 | None:intergenic | 10.0% |
| !! | TAAAAAATTTCACTTTAAAT+CGG | + | chr6_1:6642885-6642904 | None:intergenic | 10.0% |
| !! | AATAAAAATTTACATTTGTT+TGG | - | chr6_1:6643075-6643094 | Msa0871680:five_prime_UTR | 10.0% |
| !! | TAGTATATAGTATAATATAG+AGG | + | chr6_1:6640066-6640085 | None:intergenic | 15.0% |
| !! | TGATAATATAACAAATATTG+AGG | + | chr6_1:6640489-6640508 | None:intergenic | 15.0% |
| !!! | TGAAAAACTAATCTTAATTT+TGG | + | chr6_1:6640581-6640600 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTTTGTTATTGT+AGG | - | chr6_1:6640652-6640671 | Msa0871680:CDS | 15.0% |
| !!! | ATTAGTCATTTTCAATAAAA+TGG | - | chr6_1:6641362-6641381 | Msa0871680:intron | 15.0% |
| !! | AAGAATAAAAAATTGGATAT+TGG | + | chr6_1:6641476-6641495 | None:intergenic | 15.0% |
| !!! | ATTGTATTTTTTGGAAATAA+AGG | - | chr6_1:6641511-6641530 | Msa0871680:intron | 15.0% |
| !! | TAATTTGAATTAGTTATAAG+AGG | - | chr6_1:6641833-6641852 | Msa0871680:intron | 15.0% |
| !! | TCTTTAAATCATTTATATTG+CGG | + | chr6_1:6642391-6642410 | None:intergenic | 15.0% |
| !! | CAAAATATTAGATTTGAATT+TGG | + | chr6_1:6643047-6643066 | None:intergenic | 15.0% |
| !! | ATTGAAAGAAAAAAGAAAAA+AGG | + | chr6_1:6643218-6643237 | None:intergenic | 15.0% |
| !! | CAAAAATAAAATAAAGTGTA+AGG | + | chr6_1:6643332-6643351 | None:intergenic | 15.0% |
| !! | TATTAGAATTATTCATGCAA+AGG | + | chr6_1:6640150-6640169 | None:intergenic | 20.0% |
| !!! | AATCAAGAAAGAAATTTTAG+AGG | + | chr6_1:6641259-6641278 | None:intergenic | 20.0% |
| !! | AAAGAAGACTTTGATTAATT+TGG | - | chr6_1:6641310-6641329 | Msa0871680:intron | 20.0% |
| !! | CATCTTCAAGAATAAAAAAT+TGG | + | chr6_1:6641483-6641502 | None:intergenic | 20.0% |
| !! | AAATCAAAGTCTATATCAAA+GGG | + | chr6_1:6641598-6641617 | None:intergenic | 20.0% |
| !! | GTTAATTACACATTCATTAT+TGG | + | chr6_1:6641717-6641736 | None:intergenic | 20.0% |
| !!! | TGATTTAAAGATTTTTGCAA+CGG | - | chr6_1:6642400-6642419 | Msa0871680:CDS | 20.0% |
| !!! | AACCTTCATTTTCTTTTTTT+AGG | + | chr6_1:6642617-6642636 | None:intergenic | 20.0% |
| !!! | ATTTTTTAACCGAGTTAAAA+AGG | - | chr6_1:6642897-6642916 | Msa0871680:intron | 20.0% |
| !!! | GTAATTTATCCTTTTTAACT+CGG | + | chr6_1:6642909-6642928 | None:intergenic | 20.0% |
| !! | GAATGATTTAAGAGAGTTTT+TGG | + | chr6_1:6640027-6640046 | None:intergenic | 25.0% |
| ! | AGAAGAAAAAGAAAAGGATA+TGG | + | chr6_1:6640190-6640209 | None:intergenic | 25.0% |
| ! | AGTTGAAGAAGAAAAAGAAA+AGG | + | chr6_1:6640196-6640215 | None:intergenic | 25.0% |
| !! | TAACACACAAGAAAAAGTTT+TGG | + | chr6_1:6640361-6640380 | None:intergenic | 25.0% |
| !! | AAATATTGAGGTTTTCACAA+CGG | + | chr6_1:6640477-6640496 | None:intergenic | 25.0% |
| ! | ATCAATTATCAGATGAAGAA+GGG | - | chr6_1:6640791-6640810 | Msa0871680:intron | 25.0% |
| !! | ACTTTGATTAATTTGGATCT+TGG | - | chr6_1:6641317-6641336 | Msa0871680:intron | 25.0% |
| !! | TTGGTGGTAAATTAATTAAC+TGG | - | chr6_1:6641336-6641355 | Msa0871680:intron | 25.0% |
| ! | TGGTGGTAAATTAATTAACT+GGG | - | chr6_1:6641337-6641356 | Msa0871680:intron | 25.0% |
| ! | GGAAAATATGAAAAACTATG+AGG | + | chr6_1:6641576-6641595 | None:intergenic | 25.0% |
| ! | AATCAAAGTCTATATCAAAG+GGG | + | chr6_1:6641597-6641616 | None:intergenic | 25.0% |
| ! | CAAATCAAAGTCTATATCAA+AGG | + | chr6_1:6641599-6641618 | None:intergenic | 25.0% |
| ! | TAAATGATTAAAACCTTCAG+TGG | + | chr6_1:6641669-6641688 | None:intergenic | 25.0% |
| ! | ATTGAGCTTTCTTAGTAAAT+AGG | + | chr6_1:6641878-6641897 | None:intergenic | 25.0% |
| ! | ATTGTTAGTTGATCATTCAT+AGG | - | chr6_1:6641980-6641999 | Msa0871680:intron | 25.0% |
| !! | CATACCATGATTTTAAATTG+CGG | - | chr6_1:6642183-6642202 | Msa0871680:CDS | 25.0% |
| !!! | AGTTCTAAGCATTTATATTG+CGG | - | chr6_1:6642216-6642235 | Msa0871680:CDS | 25.0% |
| !! | GAGACCTCTAAAAAAATTTA+TGG | - | chr6_1:6642288-6642307 | Msa0871680:CDS | 25.0% |
| !! | GGTATTTTCCTGTAATATAA+AGG | - | chr6_1:6642444-6642463 | Msa0871680:CDS | 25.0% |
| ! | AGCCTAAAAAAAGAAAATGA+AGG | - | chr6_1:6642612-6642631 | Msa0871680:intron | 25.0% |
| ! | AAAAAGAAAATGAAGGTTCT+TGG | - | chr6_1:6642619-6642638 | Msa0871680:intron | 25.0% |
| ! | GTGAACATCAATGAATATTT+CGG | - | chr6_1:6642937-6642956 | Msa0871680:CDS | 25.0% |
| ! | TTTACATTTGTTTGGATAGT+CGG | - | chr6_1:6643083-6643102 | Msa0871680:five_prime_UTR | 25.0% |
| ! | CAATTTATGTTTGTGTAGAT+TGG | - | chr6_1:6643234-6643253 | Msa0871680:five_prime_UTR | 25.0% |
| GTATAGCTATAAAGCCATAA+GGG | + | chr6_1:6640128-6640147 | None:intergenic | 30.0% | |
| ! | TGAAAGATGAAAGTATGAGA+AGG | + | chr6_1:6640237-6640256 | None:intergenic | 30.0% |
| AAAAGTTTGCAACGTAACTT+CGG | + | chr6_1:6640406-6640425 | None:intergenic | 30.0% | |
| ! | GCAATTTAAAACCATGACAA+CGG | - | chr6_1:6640518-6640537 | Msa0871680:CDS | 30.0% |
| !! | TTGTTTGTTATTGTAGGTAG+TGG | - | chr6_1:6640658-6640677 | Msa0871680:CDS | 30.0% |
| GATCAATTATCAGATGAAGA+AGG | - | chr6_1:6640790-6640809 | Msa0871680:intron | 30.0% | |
| GAAGCAATTTGATTCTCTTA+AGG | - | chr6_1:6641029-6641048 | Msa0871680:intron | 30.0% | |
| AAACAACAAATTACATGCAG+AGG | - | chr6_1:6641077-6641096 | Msa0871680:intron | 30.0% | |
| ! | TTGATTAATTTGGATCTTGG+TGG | - | chr6_1:6641320-6641339 | Msa0871680:intron | 30.0% |
| ! | AGAAGACTTTTCTTTCACTT+TGG | - | chr6_1:6641535-6641554 | Msa0871680:intron | 30.0% |
| ATTTGATGTGTGTTTGTGAA+TGG | - | chr6_1:6641614-6641633 | Msa0871680:intron | 30.0% | |
| AAAAGTCATAAAGACCATGT+GGG | + | chr6_1:6641921-6641940 | None:intergenic | 30.0% | |
| AAAAAGTCATAAAGACCATG+TGG | + | chr6_1:6641922-6641941 | None:intergenic | 30.0% | |
| GAATGATCAACTAACAATCA+AGG | + | chr6_1:6641978-6641997 | None:intergenic | 30.0% | |
| CACTATTAAATTTGCAGTTC+TGG | + | chr6_1:6642026-6642045 | None:intergenic | 30.0% | |
| !! | TTGTCTTTTTCATAGCAACA+TGG | + | chr6_1:6642091-6642110 | None:intergenic | 30.0% |
| ATGTTGCTATGAAAAAGACA+AGG | - | chr6_1:6642090-6642109 | Msa0871680:intron | 30.0% | |
| TTTATATTGCGGTAAAATGC+TGG | - | chr6_1:6642227-6642246 | Msa0871680:CDS | 30.0% | |
| !!! | GGTGCCATAAATTTTTTTAG+AGG | + | chr6_1:6642295-6642314 | None:intergenic | 30.0% |
| ! | AGCTACAAACTCTAAAGAAA+AGG | - | chr6_1:6642565-6642584 | Msa0871680:CDS | 30.0% |
| ! | GCTACAAACTCTAAAGAAAA+GGG | - | chr6_1:6642566-6642585 | Msa0871680:CDS | 30.0% |
| !! | AAAAGGGATTGCTTTGAAAA+TGG | - | chr6_1:6642582-6642601 | Msa0871680:intron | 30.0% |
| GTGTGAATACAACATGAATT+TGG | - | chr6_1:6643138-6643157 | Msa0871680:five_prime_UTR | 30.0% | |
| AATCTATTTGAGTCATGAAG+AGG | - | chr6_1:6643274-6643293 | Msa0871680:five_prime_UTR | 30.0% | |
| ACAGATAGAGAGAGAGAATA+AGG | + | chr6_1:6639891-6639910 | None:intergenic | 35.0% | |
| ! | TGACAGAGTATTCAGAAAGA+GGG | + | chr6_1:6639974-6639993 | None:intergenic | 35.0% |
| !! | GTTTTTGGATCAGAAGAGTT+TGG | + | chr6_1:6640012-6640031 | None:intergenic | 35.0% |
| GAAACAGAAAATGACCCTTA+TGG | - | chr6_1:6640111-6640130 | Msa0871680:three_prime_UTR | 35.0% | |
| GGTATAGCTATAAAGCCATA+AGG | + | chr6_1:6640129-6640148 | None:intergenic | 35.0% | |
| TTCTTCTTCAACTTCTACCA+TGG | - | chr6_1:6640203-6640222 | Msa0871680:three_prime_UTR | 35.0% | |
| ! | AAGATGAAAGTATGAGAAGG+TGG | + | chr6_1:6640234-6640253 | None:intergenic | 35.0% |
| ! | AATCGCAATTTTGAGCACAT+CGG | + | chr6_1:6640448-6640467 | None:intergenic | 35.0% |
| !! | ATTGTAGGTAGTGGAAGTAA+TGG | - | chr6_1:6640667-6640686 | Msa0871680:CDS | 35.0% |
| !!! | AAGAGATCCATGTCATTTTC+AGG | - | chr6_1:6640709-6640728 | Msa0871680:intron | 35.0% |
| AAGTGTGATGAATTAGTGCA+TGG | - | chr6_1:6640760-6640779 | Msa0871680:intron | 35.0% | |
| AAATGGGTGAAAAGAAGAAG+AGG | - | chr6_1:6640821-6640840 | Msa0871680:intron | 35.0% | |
| !!! | CTTGAGAAGAGTTTTGAGAT+TGG | - | chr6_1:6640868-6640887 | Msa0871680:intron | 35.0% |
| ACCTGAGAGAAAAATGCAAT+TGG | - | chr6_1:6640903-6640922 | Msa0871680:intron | 35.0% | |
| AATGCAATTGGCTAAAGCTT+TGG | - | chr6_1:6640915-6640934 | Msa0871680:intron | 35.0% | |
| ATGCAATTGGCTAAAGCTTT+GGG | - | chr6_1:6640916-6640935 | Msa0871680:intron | 35.0% | |
| AACCTAGACAAGTAGCTATA+TGG | - | chr6_1:6640944-6640963 | Msa0871680:intron | 35.0% | |
| AACCATATAGCTACTTGTCT+AGG | + | chr6_1:6640949-6640968 | None:intergenic | 35.0% | |
| CACATTCATTATTGGAGACA+AGG | + | chr6_1:6641709-6641728 | None:intergenic | 35.0% | |
| GATTTAGTTATGATCCCACA+TGG | - | chr6_1:6641904-6641923 | Msa0871680:intron | 35.0% | |
| TTAGTACATAGTTGTCCACA+TGG | - | chr6_1:6642128-6642147 | Msa0871680:intron | 35.0% | |
| ! | GCAACCGCAATTTAAAATCA+TGG | + | chr6_1:6642190-6642209 | None:intergenic | 35.0% |
| GTTGCAAGCCTTTATATTAC+AGG | + | chr6_1:6642455-6642474 | None:intergenic | 35.0% | |
| TCAAATCGAGGTCAAAATTG+TGG | + | chr6_1:6642482-6642501 | None:intergenic | 35.0% | |
| ATGCATATGCTTTCAAATCG+AGG | + | chr6_1:6642494-6642513 | None:intergenic | 35.0% | |
| CTTGTAGGCTTAAGTGAATT+TGG | + | chr6_1:6642696-6642715 | None:intergenic | 35.0% | |
| TCAAGATCAGATCTTCAAGA+TGG | - | chr6_1:6642741-6642760 | Msa0871680:intron | 35.0% | |
| ATCCTTTCTTCGAGTCTTAA+CGG | + | chr6_1:6642845-6642864 | None:intergenic | 35.0% | |
| AGTGGTCATTCAATCAAGAT+AGG | - | chr6_1:6643016-6643035 | Msa0871680:CDS | 35.0% | |
| GTCATTCAATCAAGATAGGA+CGG | - | chr6_1:6643020-6643039 | Msa0871680:exon | 35.0% | |
| TATTCACACATTCGAGACAT+CGG | + | chr6_1:6643127-6643146 | None:intergenic | 35.0% | |
| ! | AGGTACAGACAGCGATTTTT+AGG | + | chr6_1:6639928-6639947 | None:intergenic | 40.0% |
| !! | GCTGGTACTGATATGATGAT+AGG | + | chr6_1:6639948-6639967 | None:intergenic | 40.0% |
| ! | AGAGTATTCAGAAAGAGGGA+TGG | + | chr6_1:6639970-6639989 | None:intergenic | 40.0% |
| ! | GTGACAGAGTATTCAGAAAG+AGG | + | chr6_1:6639975-6639994 | None:intergenic | 40.0% |
| !! | AAAGTGTTGATGAGGTGGAA+AGG | + | chr6_1:6640328-6640347 | None:intergenic | 40.0% |
| !! | TGACCTTGAAAGTGTTGATG+AGG | + | chr6_1:6640336-6640355 | None:intergenic | 40.0% |
| CTCTATGCCTGAAAATGACA+TGG | + | chr6_1:6640719-6640738 | None:intergenic | 40.0% | |
| !! | TGAAGAAGGGTACTCACAAA+TGG | - | chr6_1:6640804-6640823 | Msa0871680:intron | 40.0% |
| !! | GAAGAAGGGTACTCACAAAT+GGG | - | chr6_1:6640805-6640824 | Msa0871680:intron | 40.0% |
| ! | GCCAATTGCATTTTTCTCTC+AGG | + | chr6_1:6640907-6640926 | None:intergenic | 40.0% |
| TGCAATTGGCTAAAGCTTTG+GGG | - | chr6_1:6640917-6640936 | Msa0871680:intron | 40.0% | |
| GGTTCCAAAATAGAAGAGCA+AGG | - | chr6_1:6640965-6640984 | Msa0871680:intron | 40.0% | |
| TCCAAAATAGAAGAGCAAGG+TGG | - | chr6_1:6640968-6640987 | Msa0871680:intron | 40.0% | |
| ! | TCCACCTTGCTCTTCTATTT+TGG | + | chr6_1:6640972-6640991 | None:intergenic | 40.0% |
| ! | GGCTGATAATGACACACTTA+AGG | - | chr6_1:6641050-6641069 | Msa0871680:intron | 40.0% |
| TGATTAAAACCTTCAGTGGC+AGG | + | chr6_1:6641665-6641684 | None:intergenic | 40.0% | |
| CACTTTCATATGCTTCCATG+TGG | + | chr6_1:6642146-6642165 | None:intergenic | 40.0% | |
| ! | CACATGGAAGCATATGAAAG+TGG | - | chr6_1:6642144-6642163 | Msa0871680:intron | 40.0% |
| CTCTCGTAACATTGCAATTG+CGG | + | chr6_1:6642271-6642290 | None:intergenic | 40.0% | |
| AATGAAGGTTCTTGGAGCAA+TGG | - | chr6_1:6642627-6642646 | Msa0871680:intron | 40.0% | |
| !! | GTGAATTTGGTGTTCTAGCA+AGG | + | chr6_1:6642683-6642702 | None:intergenic | 40.0% |
| !! | CTGATCTTGAAGAGCATTGA+AGG | + | chr6_1:6642731-6642750 | None:intergenic | 40.0% |
| TTGATGAGCAGCAGAGTTTA+TGG | - | chr6_1:6642790-6642809 | Msa0871680:intron | 40.0% | |
| TCTTCGAGTCTTAACGGAAT+TGG | + | chr6_1:6642839-6642858 | None:intergenic | 40.0% | |
| TTCCGTTAAGACTCGAAGAA+AGG | - | chr6_1:6642840-6642859 | Msa0871680:intron | 40.0% | |
| !! | GAAAGGATTTTGATCAGACG+TGG | - | chr6_1:6642857-6642876 | Msa0871680:intron | 40.0% |
| CAAGCAATTTCCAACTACAG+GGG | + | chr6_1:6642971-6642990 | None:intergenic | 40.0% | |
| GCAAGCAATTTCCAACTACA+GGG | + | chr6_1:6642972-6642991 | None:intergenic | 40.0% | |
| TGCAAGCAATTTCCAACTAC+AGG | + | chr6_1:6642973-6642992 | None:intergenic | 40.0% | |
| TTGCATTCACTCACTCAATC+AGG | - | chr6_1:6642988-6643007 | Msa0871680:CDS | 40.0% | |
| TCACTCAATCAGGATATCAG+TGG | - | chr6_1:6642998-6643017 | Msa0871680:CDS | 40.0% | |
| CTATTTGAGTCATGAAGAGG+TGG | - | chr6_1:6643277-6643296 | Msa0871680:five_prime_UTR | 40.0% | |
| TATTCAGAAAGAGGGATGGC+TGG | + | chr6_1:6639966-6639985 | None:intergenic | 45.0% | |
| ATGAGAAGGTGGAAAAGCCA+TGG | + | chr6_1:6640223-6640242 | None:intergenic | 45.0% | |
| ATGAGGTGGAAAGGAAGGAT+AGG | + | chr6_1:6640319-6640338 | None:intergenic | 45.0% | |
| ! | TGTTGATGAGGTGGAAAGGA+AGG | + | chr6_1:6640324-6640343 | None:intergenic | 45.0% |
| !! | CCTTGAAAGTGTTGATGAGG+TGG | + | chr6_1:6640333-6640352 | None:intergenic | 45.0% |
| CCACCTCATCAACACTTTCA+AGG | - | chr6_1:6640330-6640349 | Msa0871680:three_prime_UTR | 45.0% | |
| !! | GTAGGTAGTGGAAGTAATGG+TGG | - | chr6_1:6640670-6640689 | Msa0871680:CDS | 45.0% |
| ! | ACAAGTTTTCCTGCCACTGA+AGG | - | chr6_1:6641653-6641672 | Msa0871680:intron | 45.0% |
| !! | AGTTCTGGATTCTGACACAC+TGG | + | chr6_1:6642011-6642030 | None:intergenic | 45.0% |
| ATTTATGGCACCCGCAACTA+CGG | - | chr6_1:6642303-6642322 | Msa0871680:CDS | 45.0% | |
| TTGTCCATAACCGTAGTTGC+GGG | + | chr6_1:6642316-6642335 | None:intergenic | 45.0% | |
| GTTGTCCATAACCGTAGTTG+CGG | + | chr6_1:6642317-6642336 | None:intergenic | 45.0% | |
| TATCCCAACTGCAATTGCGA+CGG | - | chr6_1:6642423-6642442 | Msa0871680:CDS | 45.0% | |
| ATACCGTCGCAATTGCAGTT+GGG | + | chr6_1:6642429-6642448 | None:intergenic | 45.0% | |
| AATACCGTCGCAATTGCAGT+TGG | + | chr6_1:6642430-6642449 | None:intergenic | 45.0% | |
| TGTTGCTGATGATCAGTCCA+AGG | + | chr6_1:6642816-6642835 | None:intergenic | 45.0% | |
| ATTTCCAACTACAGGGGAGT+CGG | + | chr6_1:6642965-6642984 | None:intergenic | 45.0% | |
| !! | GAGTTTGGCTCTCACTCTCA+TGG | + | chr6_1:6639997-6640016 | None:intergenic | 50.0% |
| AGGAGCTGTGTCATGCTTGT+AGG | + | chr6_1:6642711-6642730 | None:intergenic | 50.0% | |
| AGCAGCAGAGTTTATGGCCT+TGG | - | chr6_1:6642796-6642815 | Msa0871680:intron | 50.0% | |
| TCACACATTCGAGACATCGG+TGG | + | chr6_1:6643124-6643143 | None:intergenic | 50.0% | |
| GAGAGACGATGCCGTTGTCA+TGG | + | chr6_1:6640532-6640551 | None:intergenic | 55.0% | |
| CACATTCGAGACATCGGTGG+TGG | + | chr6_1:6643121-6643140 | None:intergenic | 55.0% | |
| GGCACCCGCAACTACGGTTA+TGG | - | chr6_1:6642309-6642328 | Msa0871680:CDS | 60.0% | |
| GGATCCGACTCCCCTGTAGT+TGG | - | chr6_1:6642958-6642977 | Msa0871680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 6639886 | 6643373 | 6639886 | ID=Msa0871680;Name=Msa0871680 |
| chr6_1 | mRNA | 6639886 | 6643373 | 6639886 | ID=Msa0871680-mRNA-1;Parent=Msa0871680;Name=Msa0871680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=336|1|1|1|1|1|3|525|278 |
| chr6_1 | exon | 6639886 | 6640692 | 6639886 | ID=Msa0871680-mRNA-1:exon:2094;Parent=Msa0871680-mRNA-1 |
| chr6_1 | exon | 6642161 | 6642585 | 6642161 | ID=Msa0871680-mRNA-1:exon:2093;Parent=Msa0871680-mRNA-1 |
| chr6_1 | exon | 6642908 | 6643373 | 6642908 | ID=Msa0871680-mRNA-1:exon:2092;Parent=Msa0871680-mRNA-1 |
| chr6_1 | five_prime_UTR | 6643038 | 6643373 | 6643038 | ID=Msa0871680-mRNA-1:five_prime_utr;Parent=Msa0871680-mRNA-1 |
| chr6_1 | CDS | 6642908 | 6643037 | 6642908 | ID=Msa0871680-mRNA-1:cds;Parent=Msa0871680-mRNA-1 |
| chr6_1 | CDS | 6642161 | 6642585 | 6642161 | ID=Msa0871680-mRNA-1:cds;Parent=Msa0871680-mRNA-1 |
| chr6_1 | CDS | 6640411 | 6640692 | 6640411 | ID=Msa0871680-mRNA-1:cds;Parent=Msa0871680-mRNA-1 |
| chr6_1 | three_prime_UTR | 6639886 | 6640410 | 6639886 | ID=Msa0871680-mRNA-1:three_prime_utr;Parent=Msa0871680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
