Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872430 | RHN50081.1 | 78.378 | 74 | 16 | 0 | 32 | 105 | 9 | 82 | 5.80e-33 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872430 | sp|O81833|SD11_ARATH | 60.417 | 48 | 19 | 0 | 58 | 105 | 667 | 714 | 2.64e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872430 | A0A396HC12 | 78.378 | 74 | 16 | 0 | 32 | 105 | 9 | 82 | 2.77e-33 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872430 | MtrunA17_Chr6g0453561 | 78.378 | 74 | 16 | 0 | 32 | 105 | 9 | 82 | 5.34e-37 | 125 |
| Msa0872430 | MtrunA17_Chr6g0453591 | 77.778 | 45 | 10 | 0 | 40 | 84 | 60 | 104 | 1.39e-20 | 80.9 |
| Msa0872430 | MtrunA17_Chr3g0084631 | 64.583 | 48 | 17 | 0 | 58 | 105 | 31 | 78 | 2.39e-15 | 68.9 |
| Msa0872430 | MtrunA17_Chr3g0084681 | 66.667 | 48 | 16 | 0 | 58 | 105 | 632 | 679 | 1.29e-14 | 69.7 |
| Msa0872430 | MtrunA17_Chr3g0084661 | 64.583 | 48 | 17 | 0 | 58 | 105 | 201 | 248 | 2.29e-14 | 68.6 |
| Msa0872430 | MtrunA17_Chr3g0084431 | 48.052 | 77 | 36 | 1 | 58 | 134 | 662 | 734 | 3.43e-14 | 68.6 |
| Msa0872430 | MtrunA17_Chr3g0098781 | 62.500 | 48 | 18 | 0 | 58 | 105 | 79 | 126 | 4.27e-14 | 66.6 |
| Msa0872430 | MtrunA17_Chr3g0084421 | 62.500 | 48 | 18 | 0 | 58 | 105 | 630 | 677 | 1.02e-13 | 67.0 |
| Msa0872430 | MtrunA17_Chr3g0084411 | 62.500 | 48 | 18 | 0 | 58 | 105 | 667 | 714 | 2.42e-13 | 66.2 |
| Msa0872430 | MtrunA17_Chr3g0084691 | 62.500 | 48 | 18 | 0 | 58 | 105 | 690 | 737 | 6.30e-13 | 64.7 |
| Msa0872430 | MtrunA17_Chr3g0084491 | 60.000 | 50 | 20 | 0 | 56 | 105 | 672 | 721 | 1.25e-12 | 63.9 |
| Msa0872430 | MtrunA17_Chr3g0084441 | 58.000 | 50 | 21 | 0 | 56 | 105 | 672 | 721 | 1.50e-12 | 63.9 |
| Msa0872430 | MtrunA17_Chr8g0354331 | 50.847 | 59 | 29 | 0 | 37 | 95 | 247 | 305 | 1.56e-12 | 63.5 |
| Msa0872430 | MtrunA17_Chr8g0354281 | 52.542 | 59 | 28 | 0 | 37 | 95 | 482 | 540 | 2.57e-12 | 63.2 |
| Msa0872430 | MtrunA17_Chr3g0084451 | 56.000 | 50 | 22 | 0 | 56 | 105 | 672 | 721 | 5.00e-12 | 62.4 |
| Msa0872430 | MtrunA17_Chr2g0280681 | 58.333 | 48 | 20 | 0 | 58 | 105 | 669 | 716 | 5.02e-12 | 62.4 |
| Msa0872430 | MtrunA17_Chr8g0361261 | 60.417 | 48 | 19 | 0 | 58 | 105 | 705 | 752 | 7.10e-12 | 62.0 |
| Msa0872430 | MtrunA17_Chr8g0361301 | 60.417 | 48 | 19 | 0 | 58 | 105 | 674 | 721 | 7.64e-12 | 61.6 |
| Msa0872430 | MtrunA17_Chr8g0354391 | 65.789 | 38 | 13 | 0 | 58 | 95 | 102 | 139 | 2.07e-11 | 59.7 |
| Msa0872430 | MtrunA17_Chr2g0318831 | 61.905 | 42 | 16 | 0 | 56 | 97 | 668 | 709 | 2.70e-11 | 60.1 |
| Msa0872430 | MtrunA17_Chr3g0078521 | 54.000 | 50 | 23 | 0 | 56 | 105 | 685 | 734 | 3.35e-11 | 60.1 |
| Msa0872430 | MtrunA17_Chr3g0078541 | 54.000 | 50 | 23 | 0 | 56 | 105 | 696 | 745 | 3.62e-11 | 59.7 |
| Msa0872430 | MtrunA17_Chr1g0206391 | 52.941 | 51 | 24 | 0 | 58 | 108 | 208 | 258 | 3.64e-11 | 59.7 |
| Msa0872430 | MtrunA17_Chr8g0361341 | 54.167 | 48 | 22 | 0 | 58 | 105 | 6 | 53 | 6.38e-11 | 57.0 |
| Msa0872430 | MtrunA17_Chr8g0354351 | 47.458 | 59 | 31 | 0 | 37 | 95 | 480 | 538 | 7.22e-11 | 58.9 |
| Msa0872430 | MtrunA17_Chr8g0354421 | 47.458 | 59 | 31 | 0 | 37 | 95 | 510 | 568 | 7.26e-11 | 58.9 |
| Msa0872430 | MtrunA17_Chr1g0206361 | 40.580 | 69 | 41 | 0 | 37 | 105 | 490 | 558 | 8.37e-11 | 58.5 |
| Msa0872430 | MtrunA17_Chr8g0354441 | 47.458 | 59 | 31 | 0 | 37 | 95 | 497 | 555 | 8.87e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0872430 | AT4G27300.1 | 60.417 | 48 | 19 | 0 | 58 | 105 | 667 | 714 | 2.68e-12 | 63.5 |
| Msa0872430 | AT4G23200.1 | 48.214 | 56 | 27 | 1 | 58 | 111 | 503 | 558 | 1.13e-11 | 61.6 |
| Msa0872430 | AT4G21366.1 | 58.696 | 46 | 19 | 0 | 60 | 105 | 1 | 46 | 4.04e-11 | 57.0 |
| Msa0872430 | AT4G23290.1 | 63.158 | 38 | 14 | 0 | 58 | 95 | 487 | 524 | 5.17e-11 | 59.7 |
| Msa0872430 | AT4G11470.1 | 47.458 | 59 | 31 | 0 | 37 | 95 | 485 | 543 | 6.00e-11 | 59.7 |
| Msa0872430 | AT4G11460.1 | 43.478 | 69 | 23 | 2 | 58 | 126 | 516 | 568 | 6.22e-11 | 59.7 |
| Msa0872430 | AT4G11460.3 | 43.478 | 69 | 23 | 2 | 58 | 126 | 513 | 565 | 6.27e-11 | 59.3 |
| Msa0872430 | AT4G11460.2 | 43.478 | 69 | 23 | 2 | 58 | 126 | 438 | 490 | 6.29e-11 | 59.3 |
| Msa0872430 | AT4G11470.2 | 47.458 | 59 | 31 | 0 | 37 | 95 | 490 | 548 | 6.36e-11 | 59.3 |
| Msa0872430 | AT4G23290.2 | 63.158 | 38 | 14 | 0 | 58 | 95 | 530 | 567 | 6.96e-11 | 59.3 |
| Msa0872430 | AT4G23220.1 | 60.526 | 38 | 15 | 0 | 56 | 93 | 501 | 538 | 7.12e-11 | 59.3 |
Find 19 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATTGTTGTTACATTT+AGG | 0.161466 | 6_1:+7980242 | None:intergenic |
| TATATTACTAGATGTAAATT+TGG | 0.218218 | 6_1:-7980548 | Msa0872430:CDS |
| AAATCAGATGTCTTTAATTA+TGG | 0.234358 | 6_1:-7980317 | Msa0872430:CDS |
| AATGTAACAACAATATTCTT+TGG | 0.252196 | 6_1:-7980238 | Msa0872430:CDS |
| GAATATTGTTGTTACATTTA+GGG | 0.270328 | 6_1:+7980243 | None:intergenic |
| AGATATCAAGAATAACATTT+TGG | 0.282920 | 6_1:+7980054 | None:intergenic |
| AAGTTGAGGCAAACACAAAT+AGG | 0.306683 | 6_1:-7980476 | Msa0872430:CDS |
| GTAGTTGTCTCATGCTTGTT+TGG | 0.351840 | 6_1:-7980088 | Msa0872430:intron |
| GAAACTAACTTACTATGTTT+CGG | 0.373050 | 6_1:+7980449 | None:intergenic |
| TTCTTTCCGAACACAATCTC+TGG | 0.422761 | 6_1:+7980284 | None:intergenic |
| GAATGTAATAGCAAAGTTTG+TGG | 0.442820 | 6_1:-7980200 | Msa0872430:CDS |
| AGTTGAGGCAAACACAAATA+GGG | 0.492559 | 6_1:-7980475 | Msa0872430:CDS |
| ACATGCCTCCAGAGTATGCT+AGG | 0.542978 | 6_1:-7980358 | Msa0872430:CDS |
| TGTCCACTCCTAGCATACTC+TGG | 0.561698 | 6_1:+7980350 | None:intergenic |
| ATTGTACCAGAGATTGTGTT+CGG | 0.577881 | 6_1:-7980290 | Msa0872430:CDS |
| TTTGGATTGGAAGATGAAGA+TGG | 0.581799 | 6_1:-7982947 | None:intergenic |
| CCTCCAGAGTATGCTAGGAG+TGG | 0.626998 | 6_1:-7980353 | Msa0872430:CDS |
| TGAGGCAAACACAAATAGGG+TGG | 0.680105 | 6_1:-7980472 | Msa0872430:CDS |
| CCACTCCTAGCATACTCTGG+AGG | 0.698493 | 6_1:+7980353 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATATCATAAGTAT+TGG | - | chr6_1:7980800-7980819 | Msa0872430:intron | 10.0% |
| !! | ATATATATATCATAAGTATT+GGG | - | chr6_1:7980801-7980820 | Msa0872430:intron | 10.0% |
| !! | TTGGTATTATATAAAAAAAA+AGG | - | chr6_1:7981012-7981031 | Msa0872430:intron | 10.0% |
| !! | TATTATATAAAAAAAAAGGT+TGG | - | chr6_1:7981016-7981035 | Msa0872430:intron | 10.0% |
| !! | TATAAATATAATTTCTTGAT+AGG | - | chr6_1:7982128-7982147 | Msa0872430:intron | 10.0% |
| !! | ATATTTCATCAATCATATTA+TGG | + | chr6_1:7980244-7980263 | None:intergenic | 15.0% |
| !!! | TTATATCTTATAATGCTTTT+TGG | - | chr6_1:7980452-7980471 | Msa0872430:intron | 15.0% |
| !!! | TATATCTTATAATGCTTTTT+GGG | - | chr6_1:7980453-7980472 | Msa0872430:intron | 15.0% |
| !! | CAAGATATTTATAATTTCAT+TGG | - | chr6_1:7980623-7980642 | Msa0872430:intron | 15.0% |
| !!! | TATATATATCATAAGTATTG+GGG | - | chr6_1:7980802-7980821 | Msa0872430:intron | 15.0% |
| !!! | TTGATAATGTGAAATTTTTT+AGG | - | chr6_1:7980919-7980938 | Msa0872430:intron | 15.0% |
| !!! | TGATAATGTGAAATTTTTTA+GGG | - | chr6_1:7980920-7980939 | Msa0872430:intron | 15.0% |
| !! | TAAAGAATTAATTATGTGTT+TGG | - | chr6_1:7980993-7981012 | Msa0872430:intron | 15.0% |
| !!! | AATTTTACTAAAATACTAGA+CGG | - | chr6_1:7981221-7981240 | Msa0872430:intron | 15.0% |
| !!! | AGCTTTAATAATTAAGAATT+TGG | + | chr6_1:7981281-7981300 | None:intergenic | 15.0% |
| !!! | TCTAACATTTACTTTTTTAT+TGG | - | chr6_1:7981750-7981769 | Msa0872430:intron | 15.0% |
| !!! | CTAACATTTACTTTTTTATT+GGG | - | chr6_1:7981751-7981770 | Msa0872430:intron | 15.0% |
| !! | TATATTACTAGATGTAAATT+TGG | - | chr6_1:7982417-7982436 | Msa0872430:intron | 15.0% |
| !!! | AACTAAAAGTTTGATATTTT+TGG | + | chr6_1:7982445-7982464 | None:intergenic | 15.0% |
| !!! | AAAATATCAAACTTTTAGTT+TGG | - | chr6_1:7982445-7982464 | Msa0872430:intron | 15.0% |
| !! | TTTGAAAATTATATATTCAG+CGG | - | chr6_1:7982582-7982601 | Msa0872430:intron | 15.0% |
| !! | AACAATTTAGAAGAGAAAAT+TGG | - | chr6_1:7980413-7980432 | Msa0872430:intron | 20.0% |
| !! | AGATATAATTATTAGTGATG+TGG | + | chr6_1:7980440-7980459 | None:intergenic | 20.0% |
| !! | TTGTATGATAATTTCAAACT+TGG | + | chr6_1:7980751-7980770 | None:intergenic | 20.0% |
| !!! | GATAATGTGAAATTTTTTAG+GGG | - | chr6_1:7980921-7980940 | Msa0872430:intron | 20.0% |
| !! | TATATAAAAAAAAAGGTTGG+CGG | - | chr6_1:7981019-7981038 | Msa0872430:intron | 20.0% |
| !! | ATCGAATAATTGAGTTTAAA+TGG | - | chr6_1:7981192-7981211 | Msa0872430:intron | 20.0% |
| !!! | ATTTTACTAAAATACTAGAC+GGG | - | chr6_1:7981222-7981241 | Msa0872430:intron | 20.0% |
| !! | ATTATTAAAGCTCTATCTTA+TGG | - | chr6_1:7981289-7981308 | Msa0872430:intron | 20.0% |
| !!! | TGGATGTTTTTTTTTTTTGA+AGG | - | chr6_1:7981583-7981602 | Msa0872430:intron | 20.0% |
| !!! | TTTTTAAAGAGAAATAAGAG+AGG | - | chr6_1:7982004-7982023 | Msa0872430:intron | 20.0% |
| !! | ATATTGCATAATATATGTAG+AGG | + | chr6_1:7982051-7982070 | None:intergenic | 20.0% |
| !! | TTAAATCATAATAGCTCATT+TGG | + | chr6_1:7982078-7982097 | None:intergenic | 20.0% |
| !! | TAAACACATGAGATTTAAAA+AGG | + | chr6_1:7982258-7982277 | None:intergenic | 20.0% |
| !! | TACAATAAAGATCCATAATA+AGG | + | chr6_1:7982544-7982563 | None:intergenic | 20.0% |
| !! | AAATCAGATGTCTTTAATTA+TGG | - | chr6_1:7982648-7982667 | Msa0872430:intron | 20.0% |
| !!! | GAATATTGTTGTTACATTTA+GGG | + | chr6_1:7982725-7982744 | Msa0872440:CDS | 20.0% |
| !!! | AGAATATTGTTGTTACATTT+AGG | + | chr6_1:7982726-7982745 | Msa0872440:CDS | 20.0% |
| !! | AATGTAACAACAATATTCTT+TGG | - | chr6_1:7982727-7982746 | Msa0872430:intron | 20.0% |
| !!! | AGATATCAAGAATAACATTT+TGG | + | chr6_1:7982914-7982933 | Msa0872440:intron | 20.0% |
| !! | TATTAGTACAAAAGAAGCAT+AGG | + | chr6_1:7980191-7980210 | None:intergenic | 25.0% |
| !! | TGCTTCTTTTGTACTAATAA+TGG | - | chr6_1:7980192-7980211 | Msa0872430:intron | 25.0% |
| ! | TAGAATGTTCTCCAATATAA+CGG | - | chr6_1:7980564-7980583 | Msa0872430:CDS | 25.0% |
| ! | AAGTAAAATCACCGTTATAT+TGG | + | chr6_1:7980578-7980597 | None:intergenic | 25.0% |
| !!! | ATAAGTATTGGGGAAATATT+TGG | - | chr6_1:7980812-7980831 | Msa0872430:intron | 25.0% |
| !!! | TAAGTATTGGGGAAATATTT+GGG | - | chr6_1:7980813-7980832 | Msa0872430:intron | 25.0% |
| ! | GAGTAGAAATGTATTGTTTA+AGG | - | chr6_1:7981343-7981362 | Msa0872430:intron | 25.0% |
| ! | TAGAAATGTATTGTTTAAGG+AGG | - | chr6_1:7981346-7981365 | Msa0872430:intron | 25.0% |
| ! | AGAAATGTATTGTTTAAGGA+GGG | - | chr6_1:7981347-7981366 | Msa0872430:intron | 25.0% |
| !!! | TGCTTATTTTGTTGGAAATA+AGG | - | chr6_1:7981543-7981562 | Msa0872430:intron | 25.0% |
| !!! | TTCTATTTCTAAAGTGTGTA+TGG | - | chr6_1:7981807-7981826 | Msa0872430:intron | 25.0% |
| ! | GAAACTAACTTACTATGTTT+CGG | + | chr6_1:7982519-7982538 | None:intergenic | 25.0% |
| !! | AGTTAGTTTCTACCTTATTA+TGG | - | chr6_1:7982529-7982548 | Msa0872430:intron | 25.0% |
| ! | AAACTTTGATAATATACCCC+TGG | - | chr6_1:7980054-7980073 | Msa0872430:CDS | 30.0% |
| ! | TTCCTTTTTATGAGTTACCA+GGG | + | chr6_1:7980074-7980093 | None:intergenic | 30.0% |
| AATACTTCTATAGCTGAATG+AGG | - | chr6_1:7980101-7980120 | Msa0872430:intron | 30.0% | |
| TATTATGGCAAGTATTAGTG+TGG | + | chr6_1:7980229-7980248 | None:intergenic | 30.0% | |
| !!! | GTCACTTTTTCTGATTGAAA+AGG | - | chr6_1:7980652-7980671 | Msa0872430:intron | 30.0% |
| CAAGTTTGGTATATCATAGT+TGG | - | chr6_1:7981071-7981090 | Msa0872430:intron | 30.0% | |
| ! | AACGGACTTTACTTATCTTT+CGG | - | chr6_1:7981255-7981274 | Msa0872430:intron | 30.0% |
| TTAAAGCTCTATCTTATGGA+AGG | - | chr6_1:7981293-7981312 | Msa0872430:intron | 30.0% | |
| !!! | TTACCAGATGCTTATTTTGT+TGG | - | chr6_1:7981535-7981554 | Msa0872430:intron | 30.0% |
| TTTCCAACAAAATAAGCATC+TGG | + | chr6_1:7981541-7981560 | None:intergenic | 30.0% | |
| CTTATTTGATCAAACTCATG+TGG | + | chr6_1:7981834-7981853 | None:intergenic | 30.0% | |
| TGCATAATATATGTAGAGGT+TGG | + | chr6_1:7982047-7982066 | None:intergenic | 30.0% | |
| AAATTCGATAGTGTGTCAAA+TGG | + | chr6_1:7982156-7982175 | None:intergenic | 30.0% | |
| ATTGACTAGATGACATCAAA+AGG | - | chr6_1:7982278-7982297 | Msa0872430:intron | 30.0% | |
| AAGCGTTTCAACATTATCAA+TGG | - | chr6_1:7982319-7982338 | Msa0872430:intron | 30.0% | |
| TTTATCTTCACTGTGACTTT+AGG | - | chr6_1:7982359-7982378 | Msa0872430:intron | 30.0% | |
| GAATGTAATAGCAAAGTTTG+TGG | - | chr6_1:7982765-7982784 | Msa0872430:intron | 30.0% | |
| ! | TCCTTTTTATGAGTTACCAG+GGG | + | chr6_1:7980073-7980092 | None:intergenic | 35.0% |
| ! | GTTCCTTTTTATGAGTTACC+AGG | + | chr6_1:7980075-7980094 | None:intergenic | 35.0% |
| CATCATGTTCATCAGTGATT+AGG | + | chr6_1:7980140-7980159 | None:intergenic | 35.0% | |
| TGTACTAATAATGGTTGCCA+AGG | - | chr6_1:7980201-7980220 | Msa0872430:CDS | 35.0% | |
| TTTCCTTCTCAACAAGACAA+AGG | - | chr6_1:7980286-7980305 | Msa0872430:CDS | 35.0% | |
| GTCATTGAATTGACATCTCA+TGG | - | chr6_1:7980518-7980537 | Msa0872430:CDS | 35.0% | |
| CAATCAGAAAAAGTGACAAG+TGG | + | chr6_1:7980649-7980668 | None:intergenic | 35.0% | |
| CATTATTATGCAACCTCTGT+TGG | - | chr6_1:7980699-7980718 | Msa0872430:intron | 35.0% | |
| TTTGCAAACTTATCCAACAG+AGG | + | chr6_1:7980715-7980734 | None:intergenic | 35.0% | |
| GATGACGTGAAATTTATTCC+TGG | - | chr6_1:7980945-7980964 | Msa0872430:intron | 35.0% | |
| CAATTTGTCACTCTTCTCTA+AGG | + | chr6_1:7981101-7981120 | None:intergenic | 35.0% | |
| CTTAGAGAAGAGTGACAAAT+TGG | - | chr6_1:7981099-7981118 | Msa0872430:intron | 35.0% | |
| !! | TTGGTGTTGATTAGTAGATG+TGG | + | chr6_1:7981126-7981145 | None:intergenic | 35.0% |
| ! | ACCATGTGGTAGATAACTTT+TGG | - | chr6_1:7981453-7981472 | Msa0872430:intron | 35.0% |
| TCCAAAAGTTATCTACCACA+TGG | + | chr6_1:7981457-7981476 | None:intergenic | 35.0% | |
| !! | TTTTTGAAGGATATTGCTGC+TGG | - | chr6_1:7981596-7981615 | Msa0872430:intron | 35.0% |
| GGATGCTGATATTGGAAATA+TGG | - | chr6_1:7981617-7981636 | Msa0872430:intron | 35.0% | |
| ACATTATCAATGGCATTGCT+CGG | - | chr6_1:7982329-7982348 | Msa0872430:intron | 35.0% | |
| ! | GTTTTTATGAGAGCAAGTTG+AGG | - | chr6_1:7982475-7982494 | Msa0872430:intron | 35.0% |
| AAGTTGAGGCAAACACAAAT+AGG | - | chr6_1:7982489-7982508 | Msa0872430:intron | 35.0% | |
| AGTTGAGGCAAACACAAATA+GGG | - | chr6_1:7982490-7982509 | Msa0872430:intron | 35.0% | |
| ATTGTACCAGAGATTGTGTT+CGG | - | chr6_1:7982675-7982694 | Msa0872430:intron | 35.0% | |
| ACCCCTGGTAACTCATAAAA+AGG | - | chr6_1:7980069-7980088 | Msa0872430:CDS | 40.0% | |
| CAAGTATTAGTGTGGTTCCT+TGG | + | chr6_1:7980221-7980240 | None:intergenic | 40.0% | |
| ! | GTACCTTTGTCTTGTTGAGA+AGG | + | chr6_1:7980292-7980311 | None:intergenic | 40.0% |
| ! | ATTTATTCCTGGTGATGACG+TGG | - | chr6_1:7980956-7980975 | Msa0872430:intron | 40.0% |
| AAATATACCACGTCATCACC+AGG | + | chr6_1:7980966-7980985 | None:intergenic | 40.0% | |
| TCCACAAATGCTTGCAAGTT+TGG | - | chr6_1:7981057-7981076 | Msa0872430:intron | 40.0% | |
| ACCAAACTTGCAAGCATTTG+TGG | + | chr6_1:7981061-7981080 | None:intergenic | 40.0% | |
| TAGACGGGATAATTCTCGAA+CGG | - | chr6_1:7981237-7981256 | Msa0872430:intron | 40.0% | |
| TGTGATACAAACTCACCATG+TGG | - | chr6_1:7981439-7981458 | Msa0872430:intron | 40.0% | |
| AATAAAACGATGCCTAACCG+TGG | - | chr6_1:7981477-7981496 | Msa0872430:intron | 40.0% | |
| AGGAAGATTCTTATTGCTGC+TGG | - | chr6_1:7981563-7981582 | Msa0872430:intron | 40.0% | |
| ! | TACAACTCGAACAGAGCTTT+TGG | - | chr6_1:7981665-7981684 | Msa0872430:intron | 40.0% |
| !! | AGAAATAAGAGAGGTGTCCA+TGG | - | chr6_1:7982013-7982032 | Msa0872430:intron | 40.0% |
| ! | AGAGGTTGGATTTTGAACCA+TGG | + | chr6_1:7982033-7982052 | None:intergenic | 40.0% |
| CATTATCAATGGCATTGCTC+GGG | - | chr6_1:7982330-7982349 | Msa0872430:intron | 40.0% | |
| ATTATCAATGGCATTGCTCG+GGG | - | chr6_1:7982331-7982350 | Msa0872430:intron | 40.0% | |
| !! | TGCTTGCTTTTAGATCTCTG+TGG | + | chr6_1:7982396-7982415 | None:intergenic | 40.0% |
| TTCTTTCCGAACACAATCTC+TGG | + | chr6_1:7982684-7982703 | Msa0872440:CDS | 40.0% | |
| GTAGTTGTCTCATGCTTGTT+TGG | - | chr6_1:7982877-7982896 | Msa0872430:intron | 40.0% | |
| TTGCTGCTGGATGCTGATAT+TGG | - | chr6_1:7981609-7981628 | Msa0872430:intron | 45.0% | |
| TTCACTGTGACTTTAGGCTG+AGG | - | chr6_1:7982365-7982384 | Msa0872430:intron | 45.0% | |
| TGAGGCAAACACAAATAGGG+TGG | - | chr6_1:7982493-7982512 | Msa0872430:intron | 45.0% | |
| !!! | TATTATTATTATAATTTTGA+AGG | + | chr6_1:7980775-7980794 | None:intergenic | 5.0% |
| !! | TTAATTTAATTAAAGAAATT+TGG | + | chr6_1:7981145-7981164 | None:intergenic | 5.0% |
| TCCAAAGCTATGCCACACCA+CGG | + | chr6_1:7981497-7981516 | None:intergenic | 50.0% | |
| ACATGCCTCCAGAGTATGCT+AGG | - | chr6_1:7982607-7982626 | Msa0872430:intron | 50.0% | |
| TGTCCACTCCTAGCATACTC+TGG | + | chr6_1:7982618-7982637 | None:intergenic | 50.0% | |
| AACGATGCCTAACCGTGGTG+TGG | - | chr6_1:7981482-7981501 | Msa0872430:intron | 55.0% | |
| AGCTATGCCACACCACGGTT+AGG | + | chr6_1:7981492-7981511 | None:intergenic | 55.0% | |
| ACCGTGGTGTGGCATAGCTT+TGG | - | chr6_1:7981493-7981512 | Msa0872430:intron | 55.0% | |
| CCACTCCTAGCATACTCTGG+AGG | + | chr6_1:7982615-7982634 | None:intergenic | 55.0% | |
| CCTCCAGAGTATGCTAGGAG+TGG | - | chr6_1:7982612-7982631 | Msa0872430:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 7980031 | 7982956 | 7980031 | ID=Msa0872430;Name=Msa0872430 |
| chr6_1 | mRNA | 7980031 | 7982956 | 7980031 | ID=Msa0872430-mRNA-1;Parent=Msa0872430;Name=Msa0872430-mRNA-1;_AED=0.61;_eAED=0.74;_QI=0|0|0|0.33|1|1|6|0|144 |
| chr6_1 | exon | 7982948 | 7982956 | 7982948 | ID=Msa0872430-mRNA-1:exon:2395;Parent=Msa0872430-mRNA-1 |
| chr6_1 | exon | 7982680 | 7982685 | 7982680 | ID=Msa0872430-mRNA-1:exon:2394;Parent=Msa0872430-mRNA-1 |
| chr6_1 | exon | 7982074 | 7982079 | 7982074 | ID=Msa0872430-mRNA-1:exon:2393;Parent=Msa0872430-mRNA-1 |
| chr6_1 | exon | 7980458 | 7980606 | 7980458 | ID=Msa0872430-mRNA-1:exon:2392;Parent=Msa0872430-mRNA-1 |
| chr6_1 | exon | 7980197 | 7980385 | 7980197 | ID=Msa0872430-mRNA-1:exon:2391;Parent=Msa0872430-mRNA-1 |
| chr6_1 | exon | 7980031 | 7980106 | 7980031 | ID=Msa0872430-mRNA-1:exon:2390;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7982948 | 7982956 | 7982948 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7982680 | 7982685 | 7982680 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7982074 | 7982079 | 7982074 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7980458 | 7980606 | 7980458 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7980197 | 7980385 | 7980197 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| chr6_1 | CDS | 7980031 | 7980106 | 7980031 | ID=Msa0872430-mRNA-1:cds;Parent=Msa0872430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
