Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873900 | RHN49639.1 | 70.064 | 157 | 25 | 4 | 56 | 191 | 12 | 167 | 2.71e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873900 | A0A396H8N5 | 70.064 | 157 | 25 | 4 | 56 | 191 | 12 | 167 | 1.30e-64 | 206 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0873900 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873900 | MtrunA17_Chr7g0276661 | 70.064 | 157 | 25 | 4 | 56 | 191 | 12 | 167 | 2.50e-68 | 206 |
| Msa0873900 | MtrunA17_Chr1g0175881 | 52.308 | 130 | 40 | 5 | 56 | 180 | 12 | 124 | 3.17e-34 | 118 |
| Msa0873900 | MtrunA17_Chr2g0281511 | 37.273 | 110 | 68 | 1 | 83 | 191 | 11 | 120 | 2.28e-27 | 100 |
| Msa0873900 | MtrunA17_Chr2g0309121 | 39.316 | 117 | 66 | 3 | 76 | 191 | 7 | 119 | 2.69e-26 | 97.4 |
| Msa0873900 | MtrunA17_Chr8g0356961 | 31.313 | 99 | 65 | 1 | 96 | 191 | 77 | 175 | 1.00e-13 | 66.2 |
| Msa0873900 | MtrunA17_Chr0c01g0489371 | 33.708 | 89 | 56 | 1 | 96 | 181 | 226 | 314 | 3.19e-13 | 66.6 |
| Msa0873900 | MtrunA17_Chr6g0485871 | 29.915 | 117 | 81 | 1 | 63 | 178 | 182 | 298 | 8.65e-12 | 62.8 |
| Msa0873900 | MtrunA17_Chr3g0081891 | 36.508 | 63 | 40 | 0 | 83 | 145 | 11 | 73 | 1.12e-11 | 58.2 |
| Msa0873900 | MtrunA17_Chr5g0434641 | 31.461 | 89 | 58 | 1 | 96 | 181 | 210 | 298 | 4.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCAACAATTCGAATTT+TGG | 0.069208 | 6_1:+9521589 | None:intergenic |
| CCATCGACTTCTTCTTCATT+TGG | 0.249648 | 6_1:+9521864 | None:intergenic |
| GTGGATGGTTTGAGTTTGTT+AGG | 0.273672 | 6_1:-9521499 | Msa0873900:CDS |
| TGAAGATCGGGTCATTTGAT+TGG | 0.360270 | 6_1:-9522183 | Msa0873900:CDS |
| CGAATTGTTGATGATGAAAC+TGG | 0.373851 | 6_1:-9521581 | Msa0873900:CDS |
| GAATGTGAAGTTCGTGATAA+AGG | 0.381874 | 6_1:-9521548 | Msa0873900:CDS |
| GGCTGCTGGACGGAGAGTTC+TGG | 0.386406 | 6_1:-9521766 | Msa0873900:intron |
| AAGTTCGTGATAAAGGAAAT+TGG | 0.388847 | 6_1:-9521541 | Msa0873900:CDS |
| TTTGAAATTGTGCAAATACT+TGG | 0.402550 | 6_1:+9521841 | None:intergenic |
| ATTAGTTCTGCTACGGCTGC+TGG | 0.408831 | 6_1:-9521780 | Msa0873900:CDS |
| GAAGATCGGGTCATTTGATT+GGG | 0.427759 | 6_1:-9522182 | Msa0873900:CDS |
| ATGAAATGTGCGGCGGATGC+AGG | 0.449012 | 6_1:-9522246 | Msa0873900:CDS |
| CGAAGAAGAAGATGAAGATC+GGG | 0.478220 | 6_1:-9522195 | Msa0873900:CDS |
| TGGATGGTTTGAGTTTGTTA+GGG | 0.484898 | 6_1:-9521498 | Msa0873900:CDS |
| CTGCAGCGATGTAATTGATC+CGG | 0.509939 | 6_1:-9521919 | Msa0873900:intron |
| CTTCTTCGTCCATCTCAAAA+CGG | 0.536060 | 6_1:+9522210 | None:intergenic |
| ACGAAGAAGAAGATGAAGAT+CGG | 0.540825 | 6_1:-9522196 | Msa0873900:CDS |
| CGATGTAATTGATCCGGAGT+TGG | 0.544205 | 6_1:-9521913 | Msa0873900:CDS |
| CAATCTTATTGCCGTCAAAA+CGG | 0.544280 | 6_1:+9522150 | None:intergenic |
| TTATTGCCGTCAAAACGGTT+CGG | 0.545486 | 6_1:+9522155 | None:intergenic |
| CTTTGAATTGCAATCTTCCG+AGG | 0.557056 | 6_1:+9521629 | None:intergenic |
| TCGTGATAAAGGAAATTGGA+TGG | 0.565929 | 6_1:-9521537 | Msa0873900:CDS |
| TGAATGTGTAGTGTATTCCT+CGG | 0.571099 | 6_1:-9521646 | Msa0873900:intron |
| AGAAATACGTTGGAAGTGGA+TGG | 0.575514 | 6_1:-9521514 | Msa0873900:CDS |
| ATGGAGAAATACGTTGGAAG+TGG | 0.576439 | 6_1:-9521518 | Msa0873900:CDS |
| GCATAGTATTAGTTCTGCTA+CGG | 0.580120 | 6_1:-9521787 | Msa0873900:CDS |
| AATTGGATGGAGAAATACGT+TGG | 0.583531 | 6_1:-9521524 | Msa0873900:CDS |
| CCATCTCAAAACGGCGACGA+TGG | 0.584489 | 6_1:+9522219 | None:intergenic |
| AGGGCAAAAGAACTCAAAGA+AGG | 0.584629 | 6_1:-9521479 | Msa0873900:CDS |
| GCATCCGCCGCACATTTCAT+CGG | 0.590420 | 6_1:+9522249 | None:intergenic |
| GGTATCAATTCGTCCAACTC+CGG | 0.591453 | 6_1:+9521900 | None:intergenic |
| GATACAAATAATTTGTGTGG+AGG | 0.593345 | 6_1:+9521428 | None:intergenic |
| ACTGATACAAATAATTTGTG+TGG | 0.607437 | 6_1:+9521425 | None:intergenic |
| GTTCTGCTACGGCTGCTGGA+CGG | 0.628877 | 6_1:-9521776 | Msa0873900:CDS |
| CCAAATGAAGAAGAAGTCGA+TGG | 0.658231 | 6_1:-9521864 | Msa0873900:CDS |
| ATGGCGACCGATGAAATGTG+CGG | 0.726557 | 6_1:-9522256 | Msa0873900:CDS |
| GCGACCGATGAAATGTGCGG+CGG | 0.753822 | 6_1:-9522253 | Msa0873900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTATTTTATTTTTGC+TGG | - | chr6_1:9521949-9521968 | Msa0873900:intron | 15.0% |
| !!! | GTTTTTTATTTTATTTTTGC+TGG | - | chr6_1:9521949-9521968 | Msa0873900:intron | 15.0% |
| !!! | GTTGTTTTTTTTTAATCATC+TGG | - | chr6_1:9521706-9521725 | Msa0873900:intron | 20.0% |
| !!! | GTTGTTTTTTTTTAATCATC+TGG | - | chr6_1:9521706-9521725 | Msa0873900:intron | 20.0% |
| ! | CTTAAAATAGCCTTCTAAAT+GGG | + | chr6_1:9521589-9521608 | None:intergenic | 25.0% |
| !!! | CATTTAGAAGGCTATTTTAA+GGG | - | chr6_1:9521588-9521607 | Msa0873900:CDS | 25.0% |
| !! | TTTGAAATTGTGCAAATACT+TGG | + | chr6_1:9521833-9521852 | None:intergenic | 25.0% |
| !! | AAAACGATGATCATACTTTT+TGG | - | chr6_1:9521859-9521878 | Msa0873900:CDS | 25.0% |
| !! | ATCATCAACAATTCGAATTT+TGG | + | chr6_1:9522085-9522104 | None:intergenic | 25.0% |
| !! | ACTGATACAAATAATTTGTG+TGG | + | chr6_1:9522249-9522268 | None:intergenic | 25.0% |
| ! | CTTAAAATAGCCTTCTAAAT+GGG | + | chr6_1:9521589-9521608 | None:intergenic | 25.0% |
| !!! | CATTTAGAAGGCTATTTTAA+GGG | - | chr6_1:9521588-9521607 | Msa0873900:CDS | 25.0% |
| !! | TTTGAAATTGTGCAAATACT+TGG | + | chr6_1:9521833-9521852 | None:intergenic | 25.0% |
| !! | AAAACGATGATCATACTTTT+TGG | - | chr6_1:9521859-9521878 | Msa0873900:CDS | 25.0% |
| !! | ATCATCAACAATTCGAATTT+TGG | + | chr6_1:9522085-9522104 | None:intergenic | 25.0% |
| !! | ACTGATACAAATAATTTGTG+TGG | + | chr6_1:9522249-9522268 | None:intergenic | 25.0% |
| !!! | AAGATTGGGCTTTTTAGTTA+TGG | - | chr6_1:9521537-9521556 | Msa0873900:CDS | 30.0% |
| CCTTAAAATAGCCTTCTAAA+TGG | + | chr6_1:9521590-9521609 | None:intergenic | 30.0% | |
| !! | CCATTTAGAAGGCTATTTTA+AGG | - | chr6_1:9521587-9521606 | Msa0873900:CDS | 30.0% |
| AAGTTCGTGATAAAGGAAAT+TGG | - | chr6_1:9522130-9522149 | Msa0873900:CDS | 30.0% | |
| ! | GATACAAATAATTTGTGTGG+AGG | + | chr6_1:9522246-9522265 | None:intergenic | 30.0% |
| !!! | AAGATTGGGCTTTTTAGTTA+TGG | - | chr6_1:9521537-9521556 | Msa0873900:CDS | 30.0% |
| CCTTAAAATAGCCTTCTAAA+TGG | + | chr6_1:9521590-9521609 | None:intergenic | 30.0% | |
| !! | CCATTTAGAAGGCTATTTTA+AGG | - | chr6_1:9521587-9521606 | Msa0873900:CDS | 30.0% |
| AAGTTCGTGATAAAGGAAAT+TGG | - | chr6_1:9522130-9522149 | Msa0873900:CDS | 30.0% | |
| ! | GATACAAATAATTTGTGTGG+AGG | + | chr6_1:9522246-9522265 | None:intergenic | 30.0% |
| ACGAAGAAGAAGATGAAGAT+CGG | - | chr6_1:9521475-9521494 | Msa0873900:CDS | 35.0% | |
| CAATCTTATTGCCGTCAAAA+CGG | + | chr6_1:9521524-9521543 | None:intergenic | 35.0% | |
| !! | GTTTTGACGGCAATAAGATT+GGG | - | chr6_1:9521523-9521542 | Msa0873900:CDS | 35.0% |
| TTAAGGGTTGTTGTGAATCT+TGG | - | chr6_1:9521604-9521623 | Msa0873900:CDS | 35.0% | |
| ACGTCTGAGAAGAAAATTCT+AGG | - | chr6_1:9521635-9521654 | Msa0873900:CDS | 35.0% | |
| CGTCTGAGAAGAAAATTCTA+GGG | - | chr6_1:9521636-9521655 | Msa0873900:CDS | 35.0% | |
| TGAAAATGTCTTCTTCTAGC+AGG | - | chr6_1:9521667-9521686 | Msa0873900:intron | 35.0% | |
| ! | TCATTTGGATTTTCGTCTAC+AGG | + | chr6_1:9521795-9521814 | None:intergenic | 35.0% |
| !! | GCATAGTATTAGTTCTGCTA+CGG | - | chr6_1:9521884-9521903 | Msa0873900:CDS | 35.0% |
| TGAATGTGTAGTGTATTCCT+CGG | - | chr6_1:9522025-9522044 | Msa0873900:intron | 35.0% | |
| !! | CGAATTGTTGATGATGAAAC+TGG | - | chr6_1:9522090-9522109 | Msa0873900:intron | 35.0% |
| GAATGTGAAGTTCGTGATAA+AGG | - | chr6_1:9522123-9522142 | Msa0873900:CDS | 35.0% | |
| TCGTGATAAAGGAAATTGGA+TGG | - | chr6_1:9522134-9522153 | Msa0873900:CDS | 35.0% | |
| AATTGGATGGAGAAATACGT+TGG | - | chr6_1:9522147-9522166 | Msa0873900:CDS | 35.0% | |
| !! | TGGATGGTTTGAGTTTGTTA+GGG | - | chr6_1:9522173-9522192 | Msa0873900:CDS | 35.0% |
| ACGAAGAAGAAGATGAAGAT+CGG | - | chr6_1:9521475-9521494 | Msa0873900:CDS | 35.0% | |
| CAATCTTATTGCCGTCAAAA+CGG | + | chr6_1:9521524-9521543 | None:intergenic | 35.0% | |
| !! | GTTTTGACGGCAATAAGATT+GGG | - | chr6_1:9521523-9521542 | Msa0873900:CDS | 35.0% |
| TTAAGGGTTGTTGTGAATCT+TGG | - | chr6_1:9521604-9521623 | Msa0873900:CDS | 35.0% | |
| ACGTCTGAGAAGAAAATTCT+AGG | - | chr6_1:9521635-9521654 | Msa0873900:CDS | 35.0% | |
| CGTCTGAGAAGAAAATTCTA+GGG | - | chr6_1:9521636-9521655 | Msa0873900:CDS | 35.0% | |
| TGAAAATGTCTTCTTCTAGC+AGG | - | chr6_1:9521667-9521686 | Msa0873900:intron | 35.0% | |
| ! | TCATTTGGATTTTCGTCTAC+AGG | + | chr6_1:9521795-9521814 | None:intergenic | 35.0% |
| !! | GCATAGTATTAGTTCTGCTA+CGG | - | chr6_1:9521884-9521903 | Msa0873900:CDS | 35.0% |
| TGAATGTGTAGTGTATTCCT+CGG | - | chr6_1:9522025-9522044 | Msa0873900:intron | 35.0% | |
| !! | CGAATTGTTGATGATGAAAC+TGG | - | chr6_1:9522090-9522109 | Msa0873900:intron | 35.0% |
| GAATGTGAAGTTCGTGATAA+AGG | - | chr6_1:9522123-9522142 | Msa0873900:CDS | 35.0% | |
| TCGTGATAAAGGAAATTGGA+TGG | - | chr6_1:9522134-9522153 | Msa0873900:CDS | 35.0% | |
| AATTGGATGGAGAAATACGT+TGG | - | chr6_1:9522147-9522166 | Msa0873900:CDS | 35.0% | |
| !! | TGGATGGTTTGAGTTTGTTA+GGG | - | chr6_1:9522173-9522192 | Msa0873900:CDS | 35.0% |
| CTTCTTCGTCCATCTCAAAA+CGG | + | chr6_1:9521464-9521483 | None:intergenic | 40.0% | |
| CGAAGAAGAAGATGAAGATC+GGG | - | chr6_1:9521476-9521495 | Msa0873900:CDS | 40.0% | |
| TGAAGATCGGGTCATTTGAT+TGG | - | chr6_1:9521488-9521507 | Msa0873900:CDS | 40.0% | |
| GAAGATCGGGTCATTTGATT+GGG | - | chr6_1:9521489-9521508 | Msa0873900:CDS | 40.0% | |
| TTATTGCCGTCAAAACGGTT+CGG | + | chr6_1:9521519-9521538 | None:intergenic | 40.0% | |
| !! | CGTTTTGACGGCAATAAGAT+TGG | - | chr6_1:9521522-9521541 | Msa0873900:CDS | 40.0% |
| ATGGACCGAGCAAAAATGAA+TGG | - | chr6_1:9521556-9521575 | Msa0873900:CDS | 40.0% | |
| TGGACCGAGCAAAAATGAAT+GGG | - | chr6_1:9521557-9521576 | Msa0873900:CDS | 40.0% | |
| !! | GTGACCCATTCATTTTTGCT+CGG | + | chr6_1:9521564-9521583 | None:intergenic | 40.0% |
| GAGCAAAAATGAATGGGTCA+CGG | - | chr6_1:9521563-9521582 | Msa0873900:CDS | 40.0% | |
| !! | CCATCGACTTCTTCTTCATT+TGG | + | chr6_1:9521810-9521829 | None:intergenic | 40.0% |
| CCAAATGAAGAAGAAGTCGA+TGG | - | chr6_1:9521807-9521826 | Msa0873900:CDS | 40.0% | |
| ! | TTTGCTGGAGTATTTGCACA+TGG | - | chr6_1:9521964-9521983 | Msa0873900:intron | 40.0% |
| ! | TTGCTGGAGTATTTGCACAT+GGG | - | chr6_1:9521965-9521984 | Msa0873900:intron | 40.0% |
| CTTTGAATTGCAATCTTCCG+AGG | + | chr6_1:9522045-9522064 | None:intergenic | 40.0% | |
| ATGGAGAAATACGTTGGAAG+TGG | - | chr6_1:9522153-9522172 | Msa0873900:CDS | 40.0% | |
| AGAAATACGTTGGAAGTGGA+TGG | - | chr6_1:9522157-9522176 | Msa0873900:CDS | 40.0% | |
| ! | GTGGATGGTTTGAGTTTGTT+AGG | - | chr6_1:9522172-9522191 | Msa0873900:CDS | 40.0% |
| AGGGCAAAAGAACTCAAAGA+AGG | - | chr6_1:9522192-9522211 | Msa0873900:CDS | 40.0% | |
| CTTCTTCGTCCATCTCAAAA+CGG | + | chr6_1:9521464-9521483 | None:intergenic | 40.0% | |
| CGAAGAAGAAGATGAAGATC+GGG | - | chr6_1:9521476-9521495 | Msa0873900:CDS | 40.0% | |
| TGAAGATCGGGTCATTTGAT+TGG | - | chr6_1:9521488-9521507 | Msa0873900:CDS | 40.0% | |
| GAAGATCGGGTCATTTGATT+GGG | - | chr6_1:9521489-9521508 | Msa0873900:CDS | 40.0% | |
| TTATTGCCGTCAAAACGGTT+CGG | + | chr6_1:9521519-9521538 | None:intergenic | 40.0% | |
| !! | CGTTTTGACGGCAATAAGAT+TGG | - | chr6_1:9521522-9521541 | Msa0873900:CDS | 40.0% |
| ATGGACCGAGCAAAAATGAA+TGG | - | chr6_1:9521556-9521575 | Msa0873900:CDS | 40.0% | |
| TGGACCGAGCAAAAATGAAT+GGG | - | chr6_1:9521557-9521576 | Msa0873900:CDS | 40.0% | |
| !! | GTGACCCATTCATTTTTGCT+CGG | + | chr6_1:9521564-9521583 | None:intergenic | 40.0% |
| GAGCAAAAATGAATGGGTCA+CGG | - | chr6_1:9521563-9521582 | Msa0873900:CDS | 40.0% | |
| !! | CCATCGACTTCTTCTTCATT+TGG | + | chr6_1:9521810-9521829 | None:intergenic | 40.0% |
| CCAAATGAAGAAGAAGTCGA+TGG | - | chr6_1:9521807-9521826 | Msa0873900:CDS | 40.0% | |
| ! | TTTGCTGGAGTATTTGCACA+TGG | - | chr6_1:9521964-9521983 | Msa0873900:intron | 40.0% |
| ! | TTGCTGGAGTATTTGCACAT+GGG | - | chr6_1:9521965-9521984 | Msa0873900:intron | 40.0% |
| CTTTGAATTGCAATCTTCCG+AGG | + | chr6_1:9522045-9522064 | None:intergenic | 40.0% | |
| ATGGAGAAATACGTTGGAAG+TGG | - | chr6_1:9522153-9522172 | Msa0873900:CDS | 40.0% | |
| AGAAATACGTTGGAAGTGGA+TGG | - | chr6_1:9522157-9522176 | Msa0873900:CDS | 40.0% | |
| ! | GTGGATGGTTTGAGTTTGTT+AGG | - | chr6_1:9522172-9522191 | Msa0873900:CDS | 40.0% |
| AGGGCAAAAGAACTCAAAGA+AGG | - | chr6_1:9522192-9522211 | Msa0873900:CDS | 40.0% | |
| ! | GGTTTTCCGAACCGTTTTGA+CGG | - | chr6_1:9521510-9521529 | Msa0873900:CDS | 45.0% |
| CTGCAGCGATGTAATTGATC+CGG | - | chr6_1:9521752-9521771 | Msa0873900:intron | 45.0% | |
| CGATGTAATTGATCCGGAGT+TGG | - | chr6_1:9521758-9521777 | Msa0873900:intron | 45.0% | |
| GGTATCAATTCGTCCAACTC+CGG | + | chr6_1:9521774-9521793 | None:intergenic | 45.0% | |
| ! | GGTTTTCCGAACCGTTTTGA+CGG | - | chr6_1:9521510-9521529 | Msa0873900:CDS | 45.0% |
| CTGCAGCGATGTAATTGATC+CGG | - | chr6_1:9521752-9521771 | Msa0873900:intron | 45.0% | |
| CGATGTAATTGATCCGGAGT+TGG | - | chr6_1:9521758-9521777 | Msa0873900:intron | 45.0% | |
| GGTATCAATTCGTCCAACTC+CGG | + | chr6_1:9521774-9521793 | None:intergenic | 45.0% | |
| ATGGCGACCGATGAAATGTG+CGG | - | chr6_1:9521415-9521434 | Msa0873900:CDS | 50.0% | |
| !! | ATTAGTTCTGCTACGGCTGC+TGG | - | chr6_1:9521891-9521910 | Msa0873900:CDS | 50.0% |
| ! | CTGGAGTATTTGCACATGGG+TGG | - | chr6_1:9521968-9521987 | Msa0873900:intron | 50.0% |
| GAGTATTTGCACATGGGTGG+TGG | - | chr6_1:9521971-9521990 | Msa0873900:intron | 50.0% | |
| ATGGCGACCGATGAAATGTG+CGG | - | chr6_1:9521415-9521434 | Msa0873900:CDS | 50.0% | |
| !! | ATTAGTTCTGCTACGGCTGC+TGG | - | chr6_1:9521891-9521910 | Msa0873900:CDS | 50.0% |
| ! | CTGGAGTATTTGCACATGGG+TGG | - | chr6_1:9521968-9521987 | Msa0873900:intron | 50.0% |
| GAGTATTTGCACATGGGTGG+TGG | - | chr6_1:9521971-9521990 | Msa0873900:intron | 50.0% | |
| GCATCCGCCGCACATTTCAT+CGG | + | chr6_1:9521425-9521444 | None:intergenic | 55.0% | |
| ATGAAATGTGCGGCGGATGC+AGG | - | chr6_1:9521425-9521444 | Msa0873900:CDS | 55.0% | |
| CCATCTCAAAACGGCGACGA+TGG | + | chr6_1:9521455-9521474 | None:intergenic | 55.0% | |
| !!! | CCATCGTCGCCGTTTTGAGA+TGG | - | chr6_1:9521452-9521471 | Msa0873900:CDS | 55.0% |
| TGGGTCACGGCCCATTTAGA+AGG | - | chr6_1:9521576-9521595 | Msa0873900:CDS | 55.0% | |
| GCATCCGCCGCACATTTCAT+CGG | + | chr6_1:9521425-9521444 | None:intergenic | 55.0% | |
| ATGAAATGTGCGGCGGATGC+AGG | - | chr6_1:9521425-9521444 | Msa0873900:CDS | 55.0% | |
| CCATCTCAAAACGGCGACGA+TGG | + | chr6_1:9521455-9521474 | None:intergenic | 55.0% | |
| !!! | CCATCGTCGCCGTTTTGAGA+TGG | - | chr6_1:9521452-9521471 | Msa0873900:CDS | 55.0% |
| TGGGTCACGGCCCATTTAGA+AGG | - | chr6_1:9521576-9521595 | Msa0873900:CDS | 55.0% | |
| GCGACCGATGAAATGTGCGG+CGG | - | chr6_1:9521418-9521437 | Msa0873900:CDS | 60.0% | |
| GTTCTGCTACGGCTGCTGGA+CGG | - | chr6_1:9521895-9521914 | Msa0873900:CDS | 60.0% | |
| ! | GCTGGACGGAGAGTTCTGGT+TGG | - | chr6_1:9521909-9521928 | Msa0873900:CDS | 60.0% |
| ! | GCACATGGGTGGTGGCTTTC+TGG | - | chr6_1:9521979-9521998 | Msa0873900:intron | 60.0% |
| GCGACCGATGAAATGTGCGG+CGG | - | chr6_1:9521418-9521437 | Msa0873900:CDS | 60.0% | |
| GTTCTGCTACGGCTGCTGGA+CGG | - | chr6_1:9521895-9521914 | Msa0873900:CDS | 60.0% | |
| ! | GCTGGACGGAGAGTTCTGGT+TGG | - | chr6_1:9521909-9521928 | Msa0873900:CDS | 60.0% |
| ! | GCACATGGGTGGTGGCTTTC+TGG | - | chr6_1:9521979-9521998 | Msa0873900:intron | 60.0% |
| GGCTGCTGGACGGAGAGTTC+TGG | - | chr6_1:9521905-9521924 | Msa0873900:CDS | 65.0% | |
| GGCTGCTGGACGGAGAGTTC+TGG | - | chr6_1:9521905-9521924 | Msa0873900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 9521415 | 9522278 | 9521415 | ID=Msa0873900;Name=Msa0873900 |
| chr6_1 | mRNA | 9521415 | 9522278 | 9521415 | ID=Msa0873900-mRNA-1;Parent=Msa0873900;Name=Msa0873900-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|3|0|191 |
| chr6_1 | exon | 9522115 | 9522278 | 9522115 | ID=Msa0873900-mRNA-1:exon:2914;Parent=Msa0873900-mRNA-1 |
| chr6_1 | exon | 9521767 | 9521935 | 9521767 | ID=Msa0873900-mRNA-1:exon:2913;Parent=Msa0873900-mRNA-1 |
| chr6_1 | exon | 9521415 | 9521657 | 9521415 | ID=Msa0873900-mRNA-1:exon:2912;Parent=Msa0873900-mRNA-1 |
| chr6_1 | CDS | 9522115 | 9522278 | 9522115 | ID=Msa0873900-mRNA-1:cds;Parent=Msa0873900-mRNA-1 |
| chr6_1 | CDS | 9521767 | 9521935 | 9521767 | ID=Msa0873900-mRNA-1:cds;Parent=Msa0873900-mRNA-1 |
| chr6_1 | CDS | 9521415 | 9521657 | 9521415 | ID=Msa0873900-mRNA-1:cds;Parent=Msa0873900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
