Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875880 | RHN50388.1 | 89.936 | 785 | 68 | 4 | 1 | 784 | 1 | 775 | 0.0 | 1449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875880 | sp|Q6YXY2|HACL1_ORYSJ | 47.792 | 770 | 349 | 14 | 46 | 780 | 904 | 1655 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875880 | A0A396HCL0 | 89.936 | 785 | 68 | 4 | 1 | 784 | 1 | 775 | 0.0 | 1449 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0875880 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875880 | MtrunA17_Chr6g0456861 | 89.936 | 785 | 68 | 4 | 1 | 784 | 1 | 775 | 0.0 | 1449 |
| Msa0875880 | MtrunA17_Chr5g0438991 | 83.426 | 718 | 111 | 6 | 58 | 772 | 246 | 958 | 0.0 | 1226 |
| Msa0875880 | MtrunA17_Chr3g0138411 | 70.502 | 817 | 185 | 9 | 22 | 784 | 388 | 1202 | 0.0 | 1162 |
| Msa0875880 | MtrunA17_Chr3g0133461 | 68.192 | 852 | 194 | 12 | 2 | 784 | 496 | 1339 | 0.0 | 1150 |
| Msa0875880 | MtrunA17_Chr4g0000031 | 46.097 | 807 | 338 | 16 | 51 | 780 | 909 | 1695 | 0.0 | 693 |
| Msa0875880 | MtrunA17_Chr6g0456851 | 63.136 | 491 | 162 | 8 | 59 | 536 | 349 | 833 | 0.0 | 605 |
| Msa0875880 | MtrunA17_Chr6g0456851 | 72.131 | 61 | 16 | 1 | 591 | 651 | 820 | 879 | 1.31e-18 | 90.9 |
| Msa0875880 | MtrunA17_Chr6g0456931 | 71.429 | 245 | 69 | 1 | 251 | 494 | 1 | 245 | 8.33e-121 | 363 |
| Msa0875880 | MtrunA17_Chr5g0401991 | 76.623 | 231 | 42 | 3 | 479 | 707 | 1 | 221 | 2.10e-114 | 345 |
| Msa0875880 | MtrunA17_Chr5g0402001 | 86.139 | 101 | 13 | 1 | 329 | 428 | 1 | 101 | 6.61e-54 | 181 |
| Msa0875880 | MtrunA17_Chr5g0439001 | 81.915 | 94 | 17 | 0 | 430 | 523 | 1 | 94 | 7.78e-45 | 157 |
| Msa0875880 | MtrunA17_Chr6g0456921 | 49.677 | 155 | 20 | 4 | 329 | 482 | 1 | 98 | 8.53e-34 | 132 |
| Msa0875880 | MtrunA17_Chr1g0169961 | 67.470 | 83 | 26 | 1 | 58 | 140 | 87 | 168 | 3.12e-29 | 114 |
| Msa0875880 | MtrunA17_Chr6g0456911 | 88.889 | 54 | 6 | 0 | 591 | 644 | 7 | 60 | 1.56e-26 | 103 |
| Msa0875880 | MtrunA17_Chr0c02g0489811 | 85.965 | 57 | 8 | 0 | 588 | 644 | 5 | 61 | 7.60e-26 | 101 |
| Msa0875880 | MtrunA17_Chr7g0229221 | 82.456 | 57 | 10 | 0 | 588 | 644 | 5 | 61 | 1.52e-24 | 97.8 |
| Msa0875880 | MtrunA17_Chr0c02g0489731 | 80.702 | 57 | 11 | 0 | 588 | 644 | 5 | 61 | 2.43e-23 | 94.4 |
| Msa0875880 | MtrunA17_Chr0c02g0489721 | 89.362 | 47 | 5 | 0 | 518 | 564 | 1 | 47 | 3.09e-23 | 93.2 |
| Msa0875880 | MtrunA17_Chr7g0229231 | 89.362 | 47 | 5 | 0 | 518 | 564 | 1 | 47 | 3.09e-23 | 93.2 |
| Msa0875880 | MtrunA17_Chr0c02g0489821 | 91.111 | 45 | 4 | 0 | 520 | 564 | 1 | 45 | 2.49e-22 | 90.5 |
| Msa0875880 | MtrunA17_Chr6g0456781 | 63.492 | 63 | 20 | 1 | 112 | 174 | 25 | 84 | 3.65e-17 | 79.0 |
| Msa0875880 | MtrunA17_Chr5g0402011 | 96.774 | 31 | 1 | 0 | 177 | 207 | 21 | 51 | 6.66e-15 | 70.5 |
| Msa0875880 | MtrunA17_Chr5g0401281 | 38.889 | 72 | 43 | 1 | 701 | 771 | 279 | 350 | 9.16e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0875880 | AT1G79000.1 | 45.682 | 799 | 354 | 15 | 51 | 780 | 896 | 1683 | 0.0 | 702 |
| Msa0875880 | AT1G79000.2 | 45.682 | 799 | 354 | 15 | 51 | 780 | 896 | 1683 | 0.0 | 702 |
| Msa0875880 | AT1G79000.3 | 45.682 | 799 | 354 | 15 | 51 | 780 | 872 | 1659 | 0.0 | 702 |
| Msa0875880 | AT1G16710.2 | 46.106 | 796 | 355 | 16 | 51 | 780 | 876 | 1663 | 0.0 | 689 |
| Msa0875880 | AT1G16710.3 | 46.106 | 796 | 355 | 16 | 51 | 780 | 879 | 1666 | 0.0 | 689 |
| Msa0875880 | AT1G16710.10 | 46.106 | 796 | 355 | 16 | 51 | 780 | 879 | 1666 | 0.0 | 689 |
| Msa0875880 | AT1G16710.8 | 46.106 | 796 | 355 | 16 | 51 | 780 | 879 | 1666 | 0.0 | 689 |
| Msa0875880 | AT1G16710.1 | 46.106 | 796 | 355 | 16 | 51 | 780 | 905 | 1692 | 0.0 | 689 |
| Msa0875880 | AT1G16710.7 | 46.106 | 796 | 355 | 16 | 51 | 780 | 879 | 1666 | 0.0 | 689 |
| Msa0875880 | AT1G16710.6 | 46.106 | 796 | 355 | 16 | 51 | 780 | 840 | 1627 | 0.0 | 688 |
| Msa0875880 | AT1G16710.4 | 46.106 | 796 | 355 | 16 | 51 | 780 | 840 | 1627 | 0.0 | 688 |
| Msa0875880 | AT1G16710.5 | 46.106 | 796 | 355 | 16 | 51 | 780 | 840 | 1627 | 0.0 | 688 |
| Msa0875880 | AT3G12980.1 | 45.791 | 784 | 351 | 18 | 58 | 780 | 885 | 1655 | 0.0 | 677 |
| Msa0875880 | AT3G12980.2 | 45.791 | 784 | 351 | 18 | 58 | 780 | 804 | 1574 | 0.0 | 675 |
| Msa0875880 | AT1G67220.1 | 42.139 | 776 | 367 | 18 | 56 | 763 | 602 | 1363 | 0.0 | 591 |
| Msa0875880 | AT1G55970.1 | 41.677 | 787 | 383 | 14 | 60 | 780 | 681 | 1457 | 0.0 | 589 |
| Msa0875880 | AT1G55970.2 | 41.804 | 787 | 368 | 15 | 60 | 780 | 681 | 1443 | 0.0 | 584 |
| Msa0875880 | AT1G16710.9 | 49.908 | 543 | 250 | 10 | 51 | 574 | 879 | 1418 | 2.83e-171 | 532 |
| Msa0875880 | AT5G67480.1 | 41.333 | 75 | 43 | 1 | 699 | 772 | 271 | 345 | 7.33e-12 | 68.6 |
| Msa0875880 | AT5G67480.3 | 41.333 | 75 | 43 | 1 | 699 | 772 | 271 | 345 | 7.33e-12 | 68.6 |
| Msa0875880 | AT5G67480.2 | 41.333 | 75 | 43 | 1 | 699 | 772 | 282 | 356 | 7.35e-12 | 68.6 |
Find 117 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGAGTCTTTGCAATTTC+TGG | 0.071145 | 6_1:-12943900 | None:intergenic |
| TACTAATATGTTCTTCTATT+TGG | 0.118199 | 6_1:-12940709 | None:intergenic |
| GCACCAAAGTTAGCAGATTT+TGG | 0.155541 | 6_1:-12941561 | None:intergenic |
| CTCTTGTAGGCAATATATTT+TGG | 0.161705 | 6_1:-12942976 | None:intergenic |
| ATACTTGCAACCTATGTAAA+AGG | 0.182450 | 6_1:+12941077 | Msa0875880:CDS |
| GAAAGTGAATAAGCAGTTTC+TGG | 0.202627 | 6_1:+12941854 | Msa0875880:CDS |
| TAACGTTTGCGTACCATTTC+AGG | 0.204389 | 6_1:-12940617 | None:intergenic |
| AGAGTGGATTGTTTGAAAAT+AGG | 0.213298 | 6_1:+12943396 | Msa0875880:CDS |
| TTGATTCCGTCAAGTATTTC+AGG | 0.217147 | 6_1:+12942124 | Msa0875880:CDS |
| ATCAAGGTAACGGCAACTTT+TGG | 0.251828 | 6_1:-12940668 | None:intergenic |
| TGCCGTGAAGTGATAGTTTC+TGG | 0.256762 | 6_1:+12943040 | Msa0875880:CDS |
| GAGTGGATTGTTTGAAAATA+GGG | 0.257007 | 6_1:+12943397 | Msa0875880:CDS |
| AGCTCGAATTTCACACTTAC+TGG | 0.290061 | 6_1:-12943825 | None:intergenic |
| TTGCATCACCAGTATGTCTT+TGG | 0.314513 | 6_1:-12942857 | None:intergenic |
| GGAATGTATGTCCAGGAGTT+TGG | 0.324631 | 6_1:+12942054 | Msa0875880:CDS |
| TCAGGAGTCAAATGAGAAAA+TGG | 0.324783 | 6_1:+12943595 | Msa0875880:CDS |
| CTATAACAAGAAAGCAGATT+TGG | 0.325291 | 6_1:+12941473 | Msa0875880:CDS |
| CTTCGTTTACCATGAGATAT+TGG | 0.325834 | 6_1:+12942185 | Msa0875880:CDS |
| GTTTCTCAACTTGCTACATA+TGG | 0.342725 | 6_1:+12942349 | Msa0875880:CDS |
| TGATTCCCAGATTGATATAC+TGG | 0.360737 | 6_1:-12943575 | None:intergenic |
| TTGCCGTAGAGCTGAAGTTT+TGG | 0.363294 | 6_1:+12944156 | Msa0875880:CDS |
| CTTCTGTTTCAGAAAATTGA+AGG | 0.379117 | 6_1:+12942012 | Msa0875880:CDS |
| TCTCGTTTGCCATACTTTGA+TGG | 0.385478 | 6_1:+12942706 | Msa0875880:CDS |
| AGTATATCAATCTGGGAATC+AGG | 0.385611 | 6_1:+12943577 | Msa0875880:CDS |
| CCTCTTTGCAAGATTTCTCT+TGG | 0.395307 | 6_1:-12941272 | None:intergenic |
| TCAACACCAGTATATCAATC+TGG | 0.396643 | 6_1:+12943569 | Msa0875880:CDS |
| ATATATTCACAAAGATTCAT+TGG | 0.399198 | 6_1:-12944191 | None:intergenic |
| CACCAGTCTCCATCAAAGTA+TGG | 0.407484 | 6_1:-12942715 | None:intergenic |
| GTGCATACATGCGGAGTTCT+CGG | 0.416560 | 6_1:-12941684 | None:intergenic |
| TGATGAAGTAATTGAAGAAC+CGG | 0.418960 | 6_1:+12941300 | Msa0875880:CDS |
| TCAGTAGGGTAATTCTCCTC+TGG | 0.420217 | 6_1:-12941885 | None:intergenic |
| CAACATTACTTGCGCGGCGG+CGG | 0.422408 | 6_1:-12943751 | None:intergenic |
| GGTGAAAATGTCAAAATCAA+TGG | 0.423219 | 6_1:+12941238 | Msa0875880:CDS |
| ACACATTAGGATTGTGTAGA+TGG | 0.424071 | 6_1:-12943505 | None:intergenic |
| CTGAATTCTCTTATAGATCA+AGG | 0.429818 | 6_1:+12941904 | Msa0875880:CDS |
| CAAACTGTAACTGAGACTTT+TGG | 0.429885 | 6_1:-12943439 | None:intergenic |
| TGGCGTAGCTTATGATTCTT+CGG | 0.436945 | 6_1:-12942435 | None:intergenic |
| ATGTATACACATCGCTGATT+CGG | 0.437115 | 6_1:-12942093 | None:intergenic |
| GTTCCAAAATCTGCTAACTT+TGG | 0.453575 | 6_1:+12941558 | Msa0875880:CDS |
| GTGAAAATGTCAAAATCAAT+GGG | 0.456076 | 6_1:+12941239 | Msa0875880:CDS |
| ATCTGCTAACTTTGGTGCTA+AGG | 0.460123 | 6_1:+12941566 | Msa0875880:CDS |
| CAAGCCTTCCAAAGACATAC+TGG | 0.466131 | 6_1:+12942849 | Msa0875880:CDS |
| CGAGGTGCATACACTTTGTC+AGG | 0.471850 | 6_1:+12943236 | Msa0875880:CDS |
| AACGAAGAAAATATTGTCGT+TGG | 0.471978 | 6_1:+12942619 | Msa0875880:CDS |
| CAGTATGTCTTTGGAAGGCT+TGG | 0.474548 | 6_1:-12942848 | None:intergenic |
| TTCTTGATTTGAGAACAGTT+TGG | 0.474837 | 6_1:-12943788 | None:intergenic |
| TATATAGAGTGCACAATGAA+TGG | 0.474840 | 6_1:+12944209 | Msa0875880:three_prime_UTR |
| TTTAGGCCTGAAATACTTGA+CGG | 0.475542 | 6_1:-12942130 | None:intergenic |
| GATCATCATGGAGGAATACT+TGG | 0.481567 | 6_1:-12943477 | None:intergenic |
| TTTCTCAACTTGCTACATAT+GGG | 0.487718 | 6_1:+12942350 | Msa0875880:CDS |
| GCCGTGAAGTGATAGTTTCT+GGG | 0.489549 | 6_1:+12943041 | Msa0875880:CDS |
| TCTGAGAAACGAATCTGATC+AGG | 0.491907 | 6_1:+12940733 | Msa0875880:CDS |
| CTGGAGGTATCATCCTGAAA+TGG | 0.492094 | 6_1:+12940604 | Msa0875880:CDS |
| TCCCAGAAACTATCACTTCA+CGG | 0.498199 | 6_1:-12943042 | None:intergenic |
| GATCTATAAGAGAATTCAGT+AGG | 0.499651 | 6_1:-12941900 | None:intergenic |
| TGCCATACTTTGATGGAGAC+TGG | 0.505154 | 6_1:+12942713 | Msa0875880:CDS |
| CAGTAGGGTAATTCTCCTCT+GGG | 0.517758 | 6_1:-12941884 | None:intergenic |
| CACATTCCGAGCCAAACTCC+TGG | 0.518027 | 6_1:-12942065 | None:intergenic |
| CTCCAGAAATTGCAAAGACT+CGG | 0.519317 | 6_1:+12943898 | Msa0875880:CDS |
| TACTTGCAACCTATGTAAAA+GGG | 0.526294 | 6_1:+12941078 | Msa0875880:CDS |
| AGTATTTCAGGCCTAAAAGA+AGG | 0.532937 | 6_1:+12942136 | Msa0875880:CDS |
| CAGGAGTTTGGCTCGGAATG+TGG | 0.533156 | 6_1:+12942066 | Msa0875880:CDS |
| CTTCCAAAACTTCAGCTCTA+CGG | 0.534051 | 6_1:-12944159 | None:intergenic |
| GATGAATTAAGCAATCAAGT+AGG | 0.536338 | 6_1:+12940569 | Msa0875880:CDS |
| AGTGTCAAATAGAACAGTAA+AGG | 0.538963 | 6_1:+12942813 | Msa0875880:CDS |
| TGAAAAGTCTTATCTCTAAG+TGG | 0.539724 | 6_1:-12941614 | None:intergenic |
| AATGTAGAATACCACGCTGC+AGG | 0.540083 | 6_1:+12943921 | Msa0875880:CDS |
| TCATTACATTTAGTGTCGGA+AGG | 0.542457 | 6_1:-12943362 | None:intergenic |
| CAACACCAGTATATCAATCT+GGG | 0.542971 | 6_1:+12943570 | Msa0875880:CDS |
| ATCACCAGTATGTCTTTGGA+AGG | 0.545017 | 6_1:-12942853 | None:intergenic |
| AATGCAATAAATGCAAAAGA+TGG | 0.545817 | 6_1:+12941430 | Msa0875880:CDS |
| CCAAGAGAAATCTTGCAAAG+AGG | 0.547222 | 6_1:+12941272 | Msa0875880:CDS |
| TGATAGTTTCTGGGAAGCGT+TGG | 0.550391 | 6_1:+12943050 | Msa0875880:CDS |
| TAGGATTGTGTAGATGGTAG+AGG | 0.554657 | 6_1:-12943499 | None:intergenic |
| GAAAATCACACTTTAAAGAA+CGG | 0.556132 | 6_1:+12943213 | Msa0875880:CDS |
| TGATGAAGTATTCCCACCCT+TGG | 0.558501 | 6_1:-12940513 | None:intergenic |
| GATAAGATGCTTGCCAAGGG+TGG | 0.559997 | 6_1:+12940500 | None:intergenic |
| AAGTAGGATTCTCCACGGAC+TGG | 0.561826 | 6_1:+12940585 | Msa0875880:CDS |
| GAAGAAGAATTTGTTGCACA+AGG | 0.565082 | 6_1:+12941181 | Msa0875880:CDS |
| TTTCAAACAATCCACTCTCA+AGG | 0.566291 | 6_1:-12943391 | None:intergenic |
| ACGTCTGAACGAATCAATCA+AGG | 0.571106 | 6_1:-12940684 | None:intergenic |
| TGAATTCTCTTATAGATCAA+GGG | 0.573900 | 6_1:+12941905 | Msa0875880:CDS |
| CCTAAAAGAAGGACAAAGAG+TGG | 0.582381 | 6_1:+12942147 | Msa0875880:CDS |
| GAACAGTTTGGATGAGAGCA+TGG | 0.587828 | 6_1:-12943776 | None:intergenic |
| GATATCATTACATTTAGTGT+CGG | 0.593014 | 6_1:-12943366 | None:intergenic |
| CTGGTGGTGCGGTAATGCTA+TGG | 0.593172 | 6_1:+12942732 | Msa0875880:CDS |
| CAAACGAGAAACTGTCACCT+TGG | 0.598098 | 6_1:-12942692 | None:intergenic |
| GAACGAATCAATCAAGGTAA+CGG | 0.599152 | 6_1:-12940678 | None:intergenic |
| CATTACATTTAGTGTCGGAA+GGG | 0.603073 | 6_1:-12943361 | None:intergenic |
| AAACGATAAGATGCTTGCCA+AGG | 0.606172 | 6_1:+12940496 | None:intergenic |
| AATGATATCGTCCTTGAGAG+TGG | 0.608339 | 6_1:+12943380 | Msa0875880:CDS |
| ATAAGATGCTTGCCAAGGGT+GGG | 0.608365 | 6_1:+12940501 | None:intergenic |
| AACGATAAGATGCTTGCCAA+GGG | 0.615841 | 6_1:+12940497 | None:intergenic |
| TAGGATTCTCCACGGACTGG+AGG | 0.617211 | 6_1:+12940588 | Msa0875880:CDS |
| GTATGTCCAGGAGTTTGGCT+CGG | 0.620509 | 6_1:+12942059 | Msa0875880:CDS |
| AGAATCATAAGCTACGCCAC+TGG | 0.623293 | 6_1:+12942439 | Msa0875880:CDS |
| CATGGTAAACGAAGGTACGA+AGG | 0.628852 | 6_1:-12942176 | None:intergenic |
| ATCTATAAGAGAATTCAGTA+GGG | 0.634140 | 6_1:-12941899 | None:intergenic |
| ATGGTAAACGAAGGTACGAA+GGG | 0.635264 | 6_1:-12942175 | None:intergenic |
| ATGGCTCAACATTACTTGCG+CGG | 0.637815 | 6_1:-12943757 | None:intergenic |
| AAATAGAACAGTAAAGGACA+TGG | 0.650828 | 6_1:+12942819 | Msa0875880:CDS |
| AGGATGATACCTCCAGTCCG+TGG | 0.660502 | 6_1:-12940597 | None:intergenic |
| AATAGAACAGTAAAGGACAT+GGG | 0.660656 | 6_1:+12942820 | Msa0875880:CDS |
| TAGATGGTAGAGGATCATCA+TGG | 0.661036 | 6_1:-12943489 | None:intergenic |
| CAATATCTCATGGTAAACGA+AGG | 0.666016 | 6_1:-12942184 | None:intergenic |
| TGGAGGAATACTTGGCACGA+CGG | 0.668087 | 6_1:-12943469 | None:intergenic |
| CAATCAAGTAGGATTCTCCA+CGG | 0.672810 | 6_1:+12940580 | Msa0875880:CDS |
| TGTGAAATTCGAGCTAATCG+AGG | 0.677098 | 6_1:+12943833 | Msa0875880:CDS |
| AAAGAAATGATCATACACGT+TGG | 0.679280 | 6_1:-12942647 | None:intergenic |
| GCTCAACATTACTTGCGCGG+CGG | 0.685916 | 6_1:-12943754 | None:intergenic |
| CATACTTTGATGGAGACTGG+TGG | 0.703400 | 6_1:+12942716 | Msa0875880:CDS |
| TTTGATGGAGACTGGTGGTG+CGG | 0.706712 | 6_1:+12942721 | Msa0875880:CDS |
| ATTGTAACACACCTGCAGCG+TGG | 0.738381 | 6_1:-12943932 | None:intergenic |
| ATGGTAGAGGATCATCATGG+AGG | 0.740516 | 6_1:-12943486 | None:intergenic |
| GTTTCTGGACATCATCCCAG+AGG | 0.751856 | 6_1:+12941869 | Msa0875880:CDS |
| TCACACTTTAAAGAACGGCG+AGG | 0.754453 | 6_1:+12943218 | Msa0875880:CDS |
| AATATCGCAAGTGAGCAACG+AGG | 0.784334 | 6_1:-12943006 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCAGAAAAAAATAAAAAT+TGG | - | chr6_1:12940898-12940917 | None:intergenic | 10.0% |
| !!! | TATTTTCAATTTCTTTTAAA+CGG | - | chr6_1:12941530-12941549 | None:intergenic | 10.0% |
| !!! | TATTTTTTTGAAGAAACAAT+TGG | - | chr6_1:12941950-12941969 | None:intergenic | 15.0% |
| !!! | ATTCATTTTATTAGTTCTAT+TGG | - | chr6_1:12942239-12942258 | None:intergenic | 15.0% |
| !!! | TTATTTTCGTAATTTTGATT+AGG | + | chr6_1:12942949-12942968 | Msa0875880:intron | 15.0% |
| !! | TACTAATATGTTCTTCTATT+TGG | - | chr6_1:12940712-12940731 | None:intergenic | 20.0% |
| !! | TATGCATATATGTATATTTC+AGG | - | chr6_1:12940963-12940982 | None:intergenic | 20.0% |
| !!! | TAATTGATAGTAAAACTTAC+CGG | - | chr6_1:12941322-12941341 | None:intergenic | 20.0% |
| !!! | AGTCAATAATTTTAATAGCA+TGG | - | chr6_1:12941742-12941761 | None:intergenic | 20.0% |
| !!! | TGCTATTAAAATTATTGACT+TGG | + | chr6_1:12941742-12941761 | Msa0875880:intron | 20.0% |
| !!! | ATATAATCATCACCTTTTTT+TGG | - | chr6_1:12942384-12942403 | None:intergenic | 20.0% |
| !! | TAAACAAAGATGATAAAAGA+AGG | - | chr6_1:12942556-12942575 | None:intergenic | 20.0% |
| !! | TTTAGATTATTTATTTGTGC+AGG | + | chr6_1:12942572-12942591 | Msa0875880:intron | 20.0% |
| !!! | TAGCATTGAATGAAATAAAA+AGG | + | chr6_1:12943143-12943162 | Msa0875880:intron | 20.0% |
| !!! | AGCATTGAATGAAATAAAAA+GGG | + | chr6_1:12943144-12943163 | Msa0875880:intron | 20.0% |
| !! | ACAATTATATGAAAAACATC+AGG | - | chr6_1:12943274-12943293 | None:intergenic | 20.0% |
| !!! | TTGAATTATATTCCATTTTC+AGG | + | chr6_1:12943322-12943341 | Msa0875880:intron | 20.0% |
| !! | ATAGAATATCCAAATTCTTT+AGG | - | chr6_1:12943974-12943993 | None:intergenic | 20.0% |
| !! | ATATATTCACAAAGATTCAT+TGG | - | chr6_1:12944194-12944213 | None:intergenic | 20.0% |
| ! | TAATTGAAATTACTAGAAGG+TGG | - | chr6_1:12940767-12940786 | None:intergenic | 25.0% |
| ! | AGGTAATTGAAATTACTAGA+AGG | - | chr6_1:12940770-12940789 | None:intergenic | 25.0% |
| ! | GTAATTTCAATTACCTTGAT+CGG | + | chr6_1:12940774-12940793 | Msa0875880:intron | 25.0% |
| ! | ATTAATATCTAAACCGATCA+AGG | - | chr6_1:12940790-12940809 | None:intergenic | 25.0% |
| ! | AGTTTCATATATAACATCCA+AGG | - | chr6_1:12940813-12940832 | None:intergenic | 25.0% |
| !!! | TTTAACACAGATTACTTTTG+AGG | + | chr6_1:12941033-12941052 | Msa0875880:intron | 25.0% |
| ! | CACAACATAAACAAAAAAGT+GGG | - | chr6_1:12941126-12941145 | None:intergenic | 25.0% |
| !! | GAGTGTTATAAGACTTTTAA+AGG | + | chr6_1:12941217-12941236 | Msa0875880:CDS | 25.0% |
| ! | GTGAAAATGTCAAAATCAAT+GGG | + | chr6_1:12941239-12941258 | Msa0875880:CDS | 25.0% |
| ! | AATGCAATAAATGCAAAAGA+TGG | + | chr6_1:12941430-12941449 | Msa0875880:CDS | 25.0% |
| !! | ATTTCTTTTAAACGGCATAA+AGG | - | chr6_1:12941522-12941541 | None:intergenic | 25.0% |
| ! | ATCTATAAGAGAATTCAGTA+GGG | - | chr6_1:12941902-12941921 | None:intergenic | 25.0% |
| ! | TGAATTCTCTTATAGATCAA+GGG | + | chr6_1:12941905-12941924 | Msa0875880:CDS | 25.0% |
| ! | TCTTCAAAAAAATATGTCTC+AGG | + | chr6_1:12941956-12941975 | Msa0875880:intron | 25.0% |
| ! | AGAAAAATACCAATATCTCA+TGG | - | chr6_1:12942197-12942216 | None:intergenic | 25.0% |
| !! | TTTTTGCTTTATCATCAGAT+TGG | + | chr6_1:12942300-12942319 | Msa0875880:intron | 25.0% |
| ! | GTATCTTTCAATGCTAAAAA+AGG | + | chr6_1:12942594-12942613 | Msa0875880:CDS | 25.0% |
| !!! | TTTCGTAATTTTGATTAGGT+TGG | + | chr6_1:12942953-12942972 | Msa0875880:intron | 25.0% |
| !! | GAAAATCACACTTTAAAGAA+CGG | + | chr6_1:12943213-12943232 | Msa0875880:CDS | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr6_1:12943268-12943287 | None:intergenic | 25.0% |
| ! | GATATCATTACATTTAGTGT+CGG | - | chr6_1:12943369-12943388 | None:intergenic | 25.0% |
| ! | AAAAATTACTCTGTTGTGAA+AGG | - | chr6_1:12944042-12944061 | None:intergenic | 25.0% |
| !!! | TTCACAACAGAGTAATTTTT+TGG | + | chr6_1:12944042-12944061 | Msa0875880:intron | 25.0% |
| GATGAATTAAGCAATCAAGT+AGG | + | chr6_1:12940569-12940588 | Msa0875880:CDS | 30.0% | |
| TCGGTTTAGATATTAATCCT+TGG | + | chr6_1:12940793-12940812 | Msa0875880:intron | 30.0% | |
| ATACTTGCAACCTATGTAAA+AGG | + | chr6_1:12941077-12941096 | Msa0875880:CDS | 30.0% | |
| TACTTGCAACCTATGTAAAA+GGG | + | chr6_1:12941078-12941097 | Msa0875880:CDS | 30.0% | |
| ! | AAAGTCTTTCCCTTTTACAT+AGG | - | chr6_1:12941090-12941109 | None:intergenic | 30.0% |
| CCACAACATAAACAAAAAAG+TGG | - | chr6_1:12941127-12941146 | None:intergenic | 30.0% | |
| !!! | CCACTTTTTTGTTTATGTTG+TGG | + | chr6_1:12941124-12941143 | Msa0875880:CDS | 30.0% |
| GGTGAAAATGTCAAAATCAA+TGG | + | chr6_1:12941238-12941257 | Msa0875880:CDS | 30.0% | |
| TGATGAAGTAATTGAAGAAC+CGG | + | chr6_1:12941300-12941319 | Msa0875880:CDS | 30.0% | |
| CTATAACAAGAAAGCAGATT+TGG | + | chr6_1:12941473-12941492 | Msa0875880:CDS | 30.0% | |
| ! | TGAAAAGTCTTATCTCTAAG+TGG | - | chr6_1:12941617-12941636 | None:intergenic | 30.0% |
| AAAAAACTGGGAAAAAGATG+AGG | + | chr6_1:12941656-12941675 | Msa0875880:CDS | 30.0% | |
| GATCTATAAGAGAATTCAGT+AGG | - | chr6_1:12941903-12941922 | None:intergenic | 30.0% | |
| CTGAATTCTCTTATAGATCA+AGG | + | chr6_1:12941904-12941923 | Msa0875880:CDS | 30.0% | |
| CTTCTGTTTCAGAAAATTGA+AGG | + | chr6_1:12942012-12942031 | Msa0875880:CDS | 30.0% | |
| ! | AAAAGCATAAGCAGAAAGAA+TGG | - | chr6_1:12942273-12942292 | None:intergenic | 30.0% |
| ! | TGGATATCTTGACTTTTGTA+AGG | + | chr6_1:12942320-12942339 | Msa0875880:CDS | 30.0% |
| ! | ATCTTGACTTTTGTAAGGAA+AGG | + | chr6_1:12942325-12942344 | Msa0875880:CDS | 30.0% |
| ! | TCTTGACTTTTGTAAGGAAA+GGG | + | chr6_1:12942326-12942345 | Msa0875880:CDS | 30.0% |
| !! | TTTCTCAACTTGCTACATAT+GGG | + | chr6_1:12942350-12942369 | Msa0875880:CDS | 30.0% |
| CTCAATGTATTGTACACATA+AGG | - | chr6_1:12942480-12942499 | None:intergenic | 30.0% | |
| AACGAAGAAAATATTGTCGT+TGG | + | chr6_1:12942619-12942638 | Msa0875880:CDS | 30.0% | |
| AAAGAAATGATCATACACGT+TGG | - | chr6_1:12942650-12942669 | None:intergenic | 30.0% | |
| TCTTTGTTCCTACTGAAAAA+AGG | + | chr6_1:12942665-12942684 | Msa0875880:CDS | 30.0% | |
| !!! | TTGGATTTCCTTTTTTCAGT+AGG | - | chr6_1:12942676-12942695 | None:intergenic | 30.0% |
| TACTGAAAAAAGGAAATCCA+AGG | + | chr6_1:12942675-12942694 | Msa0875880:CDS | 30.0% | |
| AGTGTCAAATAGAACAGTAA+AGG | + | chr6_1:12942813-12942832 | Msa0875880:CDS | 30.0% | |
| AAATAGAACAGTAAAGGACA+TGG | + | chr6_1:12942819-12942838 | Msa0875880:CDS | 30.0% | |
| AATAGAACAGTAAAGGACAT+GGG | + | chr6_1:12942820-12942839 | Msa0875880:CDS | 30.0% | |
| CATTTACTCGTGCATAAAAA+AGG | - | chr6_1:12942895-12942914 | None:intergenic | 30.0% | |
| ! | CTCTTGTAGGCAATATATTT+TGG | - | chr6_1:12942979-12942998 | None:intergenic | 30.0% |
| ! | AAGTGTGATTTTCAGAACTA+TGG | - | chr6_1:12943206-12943225 | None:intergenic | 30.0% |
| ! | CATCAATATTAGCCTGAAAA+TGG | - | chr6_1:12943337-12943356 | None:intergenic | 30.0% |
| !! | AGAGTGGATTGTTTGAAAAT+AGG | + | chr6_1:12943396-12943415 | Msa0875880:CDS | 30.0% |
| !! | GAGTGGATTGTTTGAAAATA+GGG | + | chr6_1:12943397-12943416 | Msa0875880:CDS | 30.0% |
| !! | TCATTTTGAGTCAACACATT+AGG | - | chr6_1:12943521-12943540 | None:intergenic | 30.0% |
| !! | GATTACAATTTTGAGTCAAC+TGG | - | chr6_1:12943547-12943566 | None:intergenic | 30.0% |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr6_1:12943791-12943810 | None:intergenic | 30.0% |
| ! | ACCATATCTTTTTACAATGC+TGG | - | chr6_1:12943862-12943881 | None:intergenic | 30.0% |
| GAATATCCAAATTCTTTAGG+TGG | - | chr6_1:12943971-12943990 | None:intergenic | 30.0% | |
| TATATAGAGTGCACAATGAA+TGG | + | chr6_1:12944209-12944228 | Msa0875880:three_prime_UTR | 30.0% | |
| ! | GAAAATTTTGCAAGTGATTG+CGG | - | chr6_1:12944253-12944272 | None:intergenic | 30.0% |
| GAACGAATCAATCAAGGTAA+CGG | - | chr6_1:12940681-12940700 | None:intergenic | 35.0% | |
| !! | GATTACTTTTGAGGATCAAG+CGG | + | chr6_1:12941042-12941061 | Msa0875880:intron | 35.0% |
| !! | ATTACTTTTGAGGATCAAGC+GGG | + | chr6_1:12941043-12941062 | Msa0875880:CDS | 35.0% |
| !! | GAAGAAGAATTTGTTGCACA+AGG | + | chr6_1:12941181-12941200 | Msa0875880:CDS | 35.0% |
| GTTCCAAAATCTGCTAACTT+TGG | + | chr6_1:12941558-12941577 | Msa0875880:CDS | 35.0% | |
| TCATGCAAGAGAGAAAAAAC+TGG | + | chr6_1:12941643-12941662 | Msa0875880:CDS | 35.0% | |
| CATGCAAGAGAGAAAAAACT+GGG | + | chr6_1:12941644-12941663 | Msa0875880:CDS | 35.0% | |
| GAAGTTTATGTGCATACATG+CGG | - | chr6_1:12941696-12941715 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGCAGTGATTCA+AGG | - | chr6_1:12941777-12941796 | None:intergenic | 35.0% |
| TTGAATCACTGCAAAATTGC+AGG | + | chr6_1:12941776-12941795 | Msa0875880:intron | 35.0% | |
| GAAAGTGAATAAGCAGTTTC+TGG | + | chr6_1:12941854-12941873 | Msa0875880:CDS | 35.0% | |
| GGATTTAATAGAAGTTCCCT+TGG | + | chr6_1:12941977-12941996 | Msa0875880:intron | 35.0% | |
| GAAGTATAACCTGAAACCAA+GGG | - | chr6_1:12941996-12942015 | None:intergenic | 35.0% | |
| ! | AGAAGTATAACCTGAAACCA+AGG | - | chr6_1:12941997-12942016 | None:intergenic | 35.0% |
| ! | GGAGTAGATGTATGCATTTT+TGG | + | chr6_1:12942033-12942052 | Msa0875880:CDS | 35.0% |
| !!! | CATTTTTGGAATGTATGTCC+AGG | + | chr6_1:12942047-12942066 | Msa0875880:CDS | 35.0% |
| ! | ATGTATACACATCGCTGATT+CGG | - | chr6_1:12942096-12942115 | None:intergenic | 35.0% |
| TTGATTCCGTCAAGTATTTC+AGG | + | chr6_1:12942124-12942143 | Msa0875880:CDS | 35.0% | |
| TTTAGGCCTGAAATACTTGA+CGG | - | chr6_1:12942133-12942152 | None:intergenic | 35.0% | |
| AGTATTTCAGGCCTAAAAGA+AGG | + | chr6_1:12942136-12942155 | Msa0875880:CDS | 35.0% | |
| CAATATCTCATGGTAAACGA+AGG | - | chr6_1:12942187-12942206 | None:intergenic | 35.0% | |
| CTTCGTTTACCATGAGATAT+TGG | + | chr6_1:12942185-12942204 | Msa0875880:CDS | 35.0% | |
| ! | CTTGACTTTTGTAAGGAAAG+GGG | + | chr6_1:12942327-12942346 | Msa0875880:CDS | 35.0% |
| !! | GTTTCTCAACTTGCTACATA+TGG | + | chr6_1:12942349-12942368 | Msa0875880:CDS | 35.0% |
| TACTCGTGCATAAAAAAGGA+TGG | - | chr6_1:12942891-12942910 | None:intergenic | 35.0% | |
| ! | CACTGAATGCAAGAATTTTC+AGG | + | chr6_1:12943078-12943097 | Msa0875880:CDS | 35.0% |
| !! | AGAATTTTCAGGAGTGTGAA+AGG | + | chr6_1:12943089-12943108 | Msa0875880:CDS | 35.0% |
| ! | TGGCATCTGAAATATGTGAA+TGG | - | chr6_1:12943186-12943205 | None:intergenic | 35.0% |
| ! | CATTACATTTAGTGTCGGAA+GGG | - | chr6_1:12943364-12943383 | None:intergenic | 35.0% |
| ! | TCATTACATTTAGTGTCGGA+AGG | - | chr6_1:12943365-12943384 | None:intergenic | 35.0% |
| TTTCAAACAATCCACTCTCA+AGG | - | chr6_1:12943394-12943413 | None:intergenic | 35.0% | |
| ! | CAAACTGTAACTGAGACTTT+TGG | - | chr6_1:12943442-12943461 | None:intergenic | 35.0% |
| ACACATTAGGATTGTGTAGA+TGG | - | chr6_1:12943508-12943527 | None:intergenic | 35.0% | |
| TCAACACCAGTATATCAATC+TGG | + | chr6_1:12943569-12943588 | Msa0875880:CDS | 35.0% | |
| CAACACCAGTATATCAATCT+GGG | + | chr6_1:12943570-12943589 | Msa0875880:CDS | 35.0% | |
| TGATTCCCAGATTGATATAC+TGG | - | chr6_1:12943578-12943597 | None:intergenic | 35.0% | |
| AGTATATCAATCTGGGAATC+AGG | + | chr6_1:12943577-12943596 | Msa0875880:CDS | 35.0% | |
| TCAGGAGTCAAATGAGAAAA+TGG | + | chr6_1:12943595-12943614 | Msa0875880:CDS | 35.0% | |
| CTTACTGAATTACACACAGA+TGG | + | chr6_1:12943691-12943710 | Msa0875880:intron | 35.0% | |
| GCCAGCATTGTAAAAAGATA+TGG | + | chr6_1:12943858-12943877 | Msa0875880:CDS | 35.0% | |
| TATCCAAATTCTTTAGGTGG+TGG | - | chr6_1:12943968-12943987 | None:intergenic | 35.0% | |
| CAATCAAGTAGGATTCTCCA+CGG | + | chr6_1:12940580-12940599 | Msa0875880:CDS | 40.0% | |
| TAACGTTTGCGTACCATTTC+AGG | - | chr6_1:12940620-12940639 | None:intergenic | 40.0% | |
| !! | TCAAGGTAACGGCAACTTTT+GGG | - | chr6_1:12940670-12940689 | None:intergenic | 40.0% |
| !! | ATCAAGGTAACGGCAACTTT+TGG | - | chr6_1:12940671-12940690 | None:intergenic | 40.0% |
| ACGTCTGAACGAATCAATCA+AGG | - | chr6_1:12940687-12940706 | None:intergenic | 40.0% | |
| TCTGAGAAACGAATCTGATC+AGG | + | chr6_1:12940733-12940752 | Msa0875880:CDS | 40.0% | |
| AGAAACGAATCTGATCAGGT+TGG | + | chr6_1:12940737-12940756 | Msa0875880:intron | 40.0% | |
| CCTCTTTGCAAGATTTCTCT+TGG | - | chr6_1:12941275-12941294 | None:intergenic | 40.0% | |
| CCAAGAGAAATCTTGCAAAG+AGG | + | chr6_1:12941272-12941291 | Msa0875880:CDS | 40.0% | |
| !! | ATGACTGTTGTTTCGTCTAG+TGG | + | chr6_1:12941403-12941422 | Msa0875880:intron | 40.0% |
| !! | TGACTGTTGTTTCGTCTAGT+GGG | + | chr6_1:12941404-12941423 | Msa0875880:intron | 40.0% |
| ! | GCACCAAAGTTAGCAGATTT+TGG | - | chr6_1:12941564-12941583 | None:intergenic | 40.0% |
| !! | ATCTGCTAACTTTGGTGCTA+AGG | + | chr6_1:12941566-12941585 | Msa0875880:CDS | 40.0% |
| TAGATCAAGGGTAAGTTCAG+TGG | + | chr6_1:12941917-12941936 | Msa0875880:intron | 40.0% | |
| ATAGAAGTTCCCTTGGTTTC+AGG | + | chr6_1:12941984-12942003 | Msa0875880:intron | 40.0% | |
| ! | CCACTCTTTGTCCTTCTTTT+AGG | - | chr6_1:12942150-12942169 | None:intergenic | 40.0% |
| CCTAAAAGAAGGACAAAGAG+TGG | + | chr6_1:12942147-12942166 | Msa0875880:CDS | 40.0% | |
| ! | ATGGTAAACGAAGGTACGAA+GGG | - | chr6_1:12942178-12942197 | None:intergenic | 40.0% |
| GCATAAGCAGAAAGAATGGA+AGG | - | chr6_1:12942269-12942288 | None:intergenic | 40.0% | |
| !!! | ATCACCTTTTTTTGGAGCAC+AGG | - | chr6_1:12942376-12942395 | None:intergenic | 40.0% |
| ! | TTCGGAGTCTTTTGCTCTTT+GGG | - | chr6_1:12942420-12942439 | None:intergenic | 40.0% |
| TGGCGTAGCTTATGATTCTT+CGG | - | chr6_1:12942438-12942457 | None:intergenic | 40.0% | |
| TCTCGTTTGCCATACTTTGA+TGG | + | chr6_1:12942706-12942725 | Msa0875880:CDS | 40.0% | |
| !!! | TGCTCTACTCTCTTTTTCGA+GGG | - | chr6_1:12942770-12942789 | None:intergenic | 40.0% |
| ATCACCAGTATGTCTTTGGA+AGG | - | chr6_1:12942856-12942875 | None:intergenic | 40.0% | |
| TTGCATCACCAGTATGTCTT+TGG | - | chr6_1:12942860-12942879 | None:intergenic | 40.0% | |
| ! | ACGAGGAAGTTTTCTCTTGT+AGG | - | chr6_1:12942992-12943011 | None:intergenic | 40.0% |
| TCCCAGAAACTATCACTTCA+CGG | - | chr6_1:12943045-12943064 | None:intergenic | 40.0% | |
| AATGATATCGTCCTTGAGAG+TGG | + | chr6_1:12943380-12943399 | Msa0875880:CDS | 40.0% | |
| GATCATCATGGAGGAATACT+TGG | - | chr6_1:12943480-12943499 | None:intergenic | 40.0% | |
| TAGATGGTAGAGGATCATCA+TGG | - | chr6_1:12943492-12943511 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | - | chr6_1:12943502-12943521 | None:intergenic | 40.0% | |
| AGCTCGAATTTCACACTTAC+TGG | - | chr6_1:12943828-12943847 | None:intergenic | 40.0% | |
| TGTGAAATTCGAGCTAATCG+AGG | + | chr6_1:12943833-12943852 | Msa0875880:CDS | 40.0% | |
| CTCCAGAAATTGCAAAGACT+CGG | + | chr6_1:12943898-12943917 | Msa0875880:CDS | 40.0% | |
| TTCCGAGTCTTTGCAATTTC+TGG | - | chr6_1:12943903-12943922 | None:intergenic | 40.0% | |
| CTACCACCACCTAAAGAATT+TGG | + | chr6_1:12943962-12943981 | Msa0875880:intron | 40.0% | |
| CTTCCAAAACTTCAGCTCTA+CGG | - | chr6_1:12944162-12944181 | None:intergenic | 40.0% | |
| !!! | TGAAGTTTTGGAAGCAGCAT+TGG | + | chr6_1:12944168-12944187 | Msa0875880:CDS | 40.0% |
| ! | TGATGAAGTATTCCCACCCT+TGG | - | chr6_1:12940516-12940535 | None:intergenic | 45.0% |
| !! | CTGGAGGTATCATCCTGAAA+TGG | + | chr6_1:12940604-12940623 | Msa0875880:CDS | 45.0% |
| !! | AAGGTAACGGCAACTTTTGG+GGG | - | chr6_1:12940668-12940687 | None:intergenic | 45.0% |
| !! | CAAGGTAACGGCAACTTTTG+GGG | - | chr6_1:12940669-12940688 | None:intergenic | 45.0% |
| CAGTAGGGTAATTCTCCTCT+GGG | - | chr6_1:12941887-12941906 | None:intergenic | 45.0% | |
| TCAGTAGGGTAATTCTCCTC+TGG | - | chr6_1:12941888-12941907 | None:intergenic | 45.0% | |
| GGAATGTATGTCCAGGAGTT+TGG | + | chr6_1:12942054-12942073 | Msa0875880:CDS | 45.0% | |
| ! | CATGGTAAACGAAGGTACGA+AGG | - | chr6_1:12942179-12942198 | None:intergenic | 45.0% |
| ! | CTTCGGAGTCTTTTGCTCTT+TGG | - | chr6_1:12942421-12942440 | None:intergenic | 45.0% |
| AGAATCATAAGCTACGCCAC+TGG | + | chr6_1:12942439-12942458 | Msa0875880:CDS | 45.0% | |
| GAGAAAGTAAGACTGACCAG+TGG | - | chr6_1:12942458-12942477 | None:intergenic | 45.0% | |
| CAAACGAGAAACTGTCACCT+TGG | - | chr6_1:12942695-12942714 | None:intergenic | 45.0% | |
| TGCCATACTTTGATGGAGAC+TGG | + | chr6_1:12942713-12942732 | Msa0875880:CDS | 45.0% | |
| CACCAGTCTCCATCAAAGTA+TGG | - | chr6_1:12942718-12942737 | None:intergenic | 45.0% | |
| CATACTTTGATGGAGACTGG+TGG | + | chr6_1:12942716-12942735 | Msa0875880:CDS | 45.0% | |
| !! | CTGCTCTACTCTCTTTTTCG+AGG | - | chr6_1:12942771-12942790 | None:intergenic | 45.0% |
| ! | CAGTATGTCTTTGGAAGGCT+TGG | - | chr6_1:12942851-12942870 | None:intergenic | 45.0% |
| CAAGCCTTCCAAAGACATAC+TGG | + | chr6_1:12942849-12942868 | Msa0875880:CDS | 45.0% | |
| AATATCGCAAGTGAGCAACG+AGG | - | chr6_1:12943009-12943028 | None:intergenic | 45.0% | |
| TGCCGTGAAGTGATAGTTTC+TGG | + | chr6_1:12943040-12943059 | Msa0875880:CDS | 45.0% | |
| GCCGTGAAGTGATAGTTTCT+GGG | + | chr6_1:12943041-12943060 | Msa0875880:CDS | 45.0% | |
| ! | TGATAGTTTCTGGGAAGCGT+TGG | + | chr6_1:12943050-12943069 | Msa0875880:CDS | 45.0% |
| ! | TCACACTTTAAAGAACGGCG+AGG | + | chr6_1:12943218-12943237 | Msa0875880:CDS | 45.0% |
| ATGGTAGAGGATCATCATGG+AGG | - | chr6_1:12943489-12943508 | None:intergenic | 45.0% | |
| ATGGCTCAACATTACTTGCG+CGG | - | chr6_1:12943760-12943779 | None:intergenic | 45.0% | |
| GAACAGTTTGGATGAGAGCA+TGG | - | chr6_1:12943779-12943798 | None:intergenic | 45.0% | |
| AATGTAGAATACCACGCTGC+AGG | + | chr6_1:12943921-12943940 | Msa0875880:CDS | 45.0% | |
| ! | TTGCCGTAGAGCTGAAGTTT+TGG | + | chr6_1:12944156-12944175 | Msa0875880:CDS | 45.0% |
| AAGTAGGATTCTCCACGGAC+TGG | + | chr6_1:12940585-12940604 | Msa0875880:CDS | 50.0% | |
| GTGCATACATGCGGAGTTCT+CGG | - | chr6_1:12941687-12941706 | None:intergenic | 50.0% | |
| ! | GTTTCTGGACATCATCCCAG+AGG | + | chr6_1:12941869-12941888 | Msa0875880:CDS | 50.0% |
| GTATGTCCAGGAGTTTGGCT+CGG | + | chr6_1:12942059-12942078 | Msa0875880:CDS | 50.0% | |
| TGGGCCTGTGCTCCAAAAAA+AGG | + | chr6_1:12942369-12942388 | Msa0875880:CDS | 50.0% | |
| ! | TTTGATGGAGACTGGTGGTG+CGG | + | chr6_1:12942721-12942740 | Msa0875880:CDS | 50.0% |
| CGAGGTGCATACACTTTGTC+AGG | + | chr6_1:12943236-12943255 | Msa0875880:CDS | 50.0% | |
| TGGAGGAATACTTGGCACGA+CGG | - | chr6_1:12943472-12943491 | None:intergenic | 50.0% | |
| ATTGTAACACACCTGCAGCG+TGG | - | chr6_1:12943935-12943954 | None:intergenic | 50.0% | |
| !! | TAGGATTCTCCACGGACTGG+AGG | + | chr6_1:12940588-12940607 | Msa0875880:CDS | 55.0% |
| AGGATGATACCTCCAGTCCG+TGG | - | chr6_1:12940600-12940619 | None:intergenic | 55.0% | |
| CACATTCCGAGCCAAACTCC+TGG | - | chr6_1:12942068-12942087 | None:intergenic | 55.0% | |
| !! | CAGGAGTTTGGCTCGGAATG+TGG | + | chr6_1:12942066-12942085 | Msa0875880:CDS | 55.0% |
| ! | CTGGTGGTGCGGTAATGCTA+TGG | + | chr6_1:12942732-12942751 | Msa0875880:CDS | 55.0% |
| GCTCAACATTACTTGCGCGG+CGG | - | chr6_1:12943757-12943776 | None:intergenic | 55.0% | |
| CAACATTACTTGCGCGGCGG+CGG | - | chr6_1:12943754-12943773 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 12940506 | 12944307 | 12940506 | ID=Msa0875880;Name=Msa0875880 |
| chr6_1 | mRNA | 12940506 | 12944307 | 12940506 | ID=Msa0875880-mRNA-1;Parent=Msa0875880;Name=Msa0875880-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.46|1|0.91|0.84|13|76|788 |
| chr6_1 | exon | 12940506 | 12940754 | 12940506 | ID=Msa0875880-mRNA-1:exon:3830;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12941043 | 12941321 | 12941043 | ID=Msa0875880-mRNA-1:exon:3831;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12941423 | 12941698 | 12941423 | ID=Msa0875880-mRNA-1:exon:3832;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12941798 | 12941926 | 12941798 | ID=Msa0875880-mRNA-1:exon:3833;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12942006 | 12942206 | 12942006 | ID=Msa0875880-mRNA-1:exon:3834;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12942318 | 12942460 | 12942318 | ID=Msa0875880-mRNA-1:exon:3835;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12942594 | 12942882 | 12942594 | ID=Msa0875880-mRNA-1:exon:3836;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12942971 | 12943110 | 12942971 | ID=Msa0875880-mRNA-1:exon:3837;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12943200 | 12943257 | 12943200 | ID=Msa0875880-mRNA-1:exon:3838;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12943344 | 12943616 | 12943344 | ID=Msa0875880-mRNA-1:exon:3839;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12943710 | 12943942 | 12943710 | ID=Msa0875880-mRNA-1:exon:3840;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12944111 | 12944230 | 12944111 | ID=Msa0875880-mRNA-1:exon:3841;Parent=Msa0875880-mRNA-1 |
| chr6_1 | exon | 12944255 | 12944307 | 12944255 | ID=Msa0875880-mRNA-1:exon:3842;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12940506 | 12940754 | 12940506 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12941043 | 12941321 | 12941043 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12941423 | 12941698 | 12941423 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12941798 | 12941926 | 12941798 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12942006 | 12942206 | 12942006 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12942318 | 12942460 | 12942318 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12942594 | 12942882 | 12942594 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12942971 | 12943110 | 12942971 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12943200 | 12943257 | 12943200 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12943344 | 12943616 | 12943344 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12943710 | 12943942 | 12943710 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | CDS | 12944111 | 12944207 | 12944111 | ID=Msa0875880-mRNA-1:cds;Parent=Msa0875880-mRNA-1 |
| chr6_1 | three_prime_UTR | 12944208 | 12944230 | 12944208 | ID=Msa0875880-mRNA-1:three_prime_utr;Parent=Msa0875880-mRNA-1 |
| chr6_1 | three_prime_UTR | 12944255 | 12944307 | 12944255 | ID=Msa0875880-mRNA-1:three_prime_utr;Parent=Msa0875880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
