Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876010 | XP_003625199.1 | 94.017 | 117 | 7 | 0 | 241 | 357 | 203 | 319 | 7.31e-70 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876010 | sp|Q66GR3|BH130_ARATH | 64.348 | 115 | 38 | 1 | 246 | 357 | 241 | 355 | 1.68e-41 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876010 | G7KUF7 | 94.017 | 117 | 7 | 0 | 241 | 357 | 203 | 319 | 3.49e-70 | 231 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0876010 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876010 | MtrunA17_Chr7g0258181 | 94.017 | 117 | 7 | 0 | 241 | 357 | 203 | 319 | 6.72e-74 | 231 |
| Msa0876010 | MtrunA17_Chr1g0174271 | 70.270 | 111 | 33 | 0 | 243 | 353 | 260 | 370 | 9.29e-50 | 171 |
| Msa0876010 | MtrunA17_Chr4g0032951 | 62.617 | 107 | 40 | 0 | 251 | 357 | 325 | 431 | 2.39e-41 | 150 |
| Msa0876010 | MtrunA17_Chr2g0329041 | 66.019 | 103 | 34 | 1 | 251 | 353 | 302 | 403 | 3.91e-39 | 143 |
| Msa0876010 | MtrunA17_Chr3g0087771 | 51.969 | 127 | 54 | 1 | 227 | 353 | 275 | 394 | 3.12e-37 | 138 |
| Msa0876010 | MtrunA17_Chr8g0351881 | 39.485 | 233 | 134 | 4 | 127 | 353 | 157 | 388 | 2.38e-32 | 124 |
| Msa0876010 | MtrunA17_Chr4g0014771 | 62.069 | 87 | 31 | 1 | 267 | 353 | 106 | 190 | 1.86e-30 | 115 |
| Msa0876010 | MtrunA17_Chr1g0213791 | 51.402 | 107 | 49 | 2 | 248 | 353 | 233 | 337 | 2.61e-26 | 107 |
| Msa0876010 | MtrunA17_Chr1g0190731 | 48.000 | 75 | 38 | 1 | 274 | 348 | 186 | 259 | 1.09e-13 | 71.2 |
| Msa0876010 | MtrunA17_Chr4g0074161 | 50.000 | 68 | 33 | 1 | 281 | 348 | 206 | 272 | 1.90e-13 | 70.9 |
| Msa0876010 | MtrunA17_Chr1g0152131 | 49.275 | 69 | 35 | 0 | 281 | 349 | 260 | 328 | 3.40e-13 | 70.5 |
| Msa0876010 | MtrunA17_Chr3g0131771 | 49.254 | 67 | 34 | 0 | 281 | 347 | 147 | 213 | 9.03e-13 | 68.6 |
| Msa0876010 | MtrunA17_Chr5g0421111 | 45.946 | 74 | 40 | 0 | 281 | 354 | 365 | 438 | 1.30e-12 | 68.9 |
| Msa0876010 | MtrunA17_Chr3g0144641 | 47.826 | 69 | 36 | 0 | 281 | 349 | 191 | 259 | 2.20e-12 | 67.8 |
| Msa0876010 | MtrunA17_Chr7g0234761 | 44.595 | 74 | 41 | 0 | 281 | 354 | 317 | 390 | 3.46e-12 | 67.4 |
| Msa0876010 | MtrunA17_Chr8g0365941 | 46.377 | 69 | 37 | 0 | 281 | 349 | 305 | 373 | 5.67e-12 | 66.6 |
| Msa0876010 | MtrunA17_Chr8g0339091 | 46.269 | 67 | 36 | 0 | 281 | 347 | 291 | 357 | 1.43e-11 | 65.5 |
| Msa0876010 | MtrunA17_Chr4g0035101 | 43.421 | 76 | 41 | 1 | 274 | 349 | 138 | 211 | 1.45e-11 | 65.1 |
| Msa0876010 | MtrunA17_Chr8g0385911 | 44.928 | 69 | 38 | 0 | 281 | 349 | 145 | 213 | 3.57e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876010 | AT2G42280.1 | 64.348 | 115 | 38 | 1 | 246 | 357 | 241 | 355 | 1.71e-42 | 151 |
| Msa0876010 | AT2G42280.3 | 69.000 | 100 | 28 | 1 | 246 | 342 | 241 | 340 | 2.21e-37 | 138 |
| Msa0876010 | AT1G51140.1 | 63.107 | 103 | 33 | 2 | 251 | 353 | 279 | 376 | 2.16e-36 | 135 |
| Msa0876010 | AT2G43140.1 | 55.238 | 105 | 46 | 1 | 250 | 353 | 102 | 206 | 2.80e-32 | 120 |
| Msa0876010 | AT2G43140.2 | 55.238 | 105 | 46 | 1 | 250 | 353 | 199 | 303 | 1.19e-31 | 121 |
| Msa0876010 | AT1G05805.1 | 40.764 | 157 | 87 | 3 | 202 | 353 | 200 | 355 | 3.02e-29 | 116 |
| Msa0876010 | AT1G35460.1 | 59.756 | 82 | 33 | 0 | 273 | 354 | 173 | 254 | 1.07e-28 | 112 |
| Msa0876010 | AT4G09180.1 | 59.770 | 87 | 33 | 1 | 267 | 353 | 172 | 256 | 1.14e-27 | 109 |
| Msa0876010 | AT1G35460.2 | 74.468 | 47 | 12 | 0 | 273 | 319 | 173 | 219 | 1.50e-16 | 78.2 |
| Msa0876010 | AT2G24260.2 | 51.471 | 68 | 32 | 1 | 281 | 348 | 35 | 101 | 6.41e-14 | 71.2 |
| Msa0876010 | AT2G24260.1 | 51.471 | 68 | 32 | 1 | 281 | 348 | 138 | 204 | 9.74e-14 | 72.0 |
| Msa0876010 | AT4G30980.1 | 37.500 | 120 | 63 | 3 | 239 | 348 | 79 | 196 | 1.09e-13 | 71.2 |
| Msa0876010 | AT5G58010.1 | 50.000 | 68 | 33 | 1 | 281 | 348 | 99 | 165 | 1.42e-13 | 70.9 |
| Msa0876010 | AT4G30980.2 | 37.500 | 120 | 63 | 3 | 239 | 348 | 127 | 244 | 2.85e-13 | 70.5 |
| Msa0876010 | AT4G34530.1 | 46.377 | 69 | 37 | 0 | 281 | 349 | 172 | 240 | 1.32e-12 | 68.6 |
| Msa0876010 | AT1G10120.2 | 49.275 | 69 | 35 | 0 | 281 | 349 | 206 | 274 | 1.82e-12 | 68.2 |
| Msa0876010 | AT1G10120.1 | 49.275 | 69 | 35 | 0 | 281 | 349 | 206 | 274 | 1.82e-12 | 68.2 |
| Msa0876010 | AT5G50915.3 | 49.254 | 67 | 34 | 0 | 281 | 347 | 136 | 202 | 2.56e-12 | 67.0 |
| Msa0876010 | AT5G50915.4 | 49.254 | 67 | 34 | 0 | 281 | 347 | 136 | 202 | 2.56e-12 | 67.0 |
| Msa0876010 | AT5G50915.1 | 49.254 | 67 | 34 | 0 | 281 | 347 | 136 | 202 | 3.09e-12 | 67.0 |
| Msa0876010 | AT5G50915.2 | 49.254 | 67 | 34 | 0 | 281 | 347 | 136 | 202 | 3.09e-12 | 67.0 |
| Msa0876010 | AT1G68920.3 | 46.377 | 69 | 37 | 0 | 281 | 349 | 302 | 370 | 5.84e-12 | 67.0 |
| Msa0876010 | AT1G68920.1 | 46.377 | 69 | 37 | 0 | 281 | 349 | 303 | 371 | 6.23e-12 | 67.0 |
| Msa0876010 | AT1G68920.4 | 46.377 | 69 | 37 | 0 | 281 | 349 | 303 | 371 | 6.23e-12 | 67.0 |
| Msa0876010 | AT1G68920.2 | 46.377 | 69 | 37 | 0 | 281 | 349 | 303 | 371 | 6.23e-12 | 67.0 |
| Msa0876010 | AT3G07340.1 | 43.243 | 74 | 42 | 0 | 281 | 354 | 258 | 331 | 9.08e-12 | 66.6 |
| Msa0876010 | AT3G07340.2 | 43.243 | 74 | 42 | 0 | 281 | 354 | 258 | 331 | 9.45e-12 | 66.2 |
| Msa0876010 | AT1G26260.4 | 47.761 | 67 | 35 | 0 | 281 | 347 | 223 | 289 | 1.65e-11 | 65.5 |
| Msa0876010 | AT1G26260.1 | 47.761 | 67 | 35 | 0 | 281 | 347 | 223 | 289 | 1.65e-11 | 65.5 |
| Msa0876010 | AT1G26260.6 | 47.761 | 67 | 35 | 0 | 281 | 347 | 223 | 289 | 1.65e-11 | 65.5 |
| Msa0876010 | AT1G26260.2 | 47.761 | 67 | 35 | 0 | 281 | 347 | 223 | 289 | 1.65e-11 | 65.5 |
| Msa0876010 | AT1G26260.5 | 47.761 | 67 | 35 | 0 | 281 | 347 | 201 | 267 | 1.71e-11 | 65.5 |
| Msa0876010 | AT1G26260.3 | 47.761 | 67 | 35 | 0 | 281 | 347 | 172 | 238 | 2.08e-11 | 64.7 |
| Msa0876010 | AT1G25330.1 | 43.284 | 67 | 38 | 0 | 281 | 347 | 104 | 170 | 3.77e-11 | 62.8 |
| Msa0876010 | AT2G42280.2 | 58.929 | 56 | 20 | 1 | 246 | 298 | 241 | 296 | 8.96e-11 | 62.8 |
Find 81 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATGCTATTGACATTTA+AGG | 0.092398 | 6_1:-13328240 | None:intergenic |
| TAAACAACTTGATTCATTTC+TGG | 0.150885 | 6_1:-13330498 | None:intergenic |
| AAGAACAAGGGTTACGATTT+TGG | 0.168974 | 6_1:-13324925 | None:intergenic |
| AACATCTCTGATGACTTTCT+TGG | 0.289008 | 6_1:-13329990 | None:intergenic |
| ACCCTTTCGGCAAGGCTTCT+AGG | 0.305032 | 6_1:-13330089 | None:intergenic |
| CTGGTTTCTGCATCTGCACT+TGG | 0.320329 | 6_1:-13330479 | None:intergenic |
| ATACTGCTTGGAACAGAATC+TGG | 0.326173 | 6_1:-13330038 | None:intergenic |
| CCGAGTTCTTCTTACCCTTT+CGG | 0.326997 | 6_1:-13330102 | None:intergenic |
| TCGCGCCGCGCCTTGTATAA+TGG | 0.331144 | 6_1:+13324996 | Msa0876010:CDS |
| GGTGAATGAAACCACATCTT+TGG | 0.335358 | 6_1:+13327887 | Msa0876010:CDS |
| TTGCGACCTCAAGGGTAATA+TGG | 0.344988 | 6_1:-13327983 | None:intergenic |
| ATTCTGACCTTATCAATGTT+TGG | 0.345820 | 6_1:-13330161 | None:intergenic |
| CTCTTTGCTCTGATACTGCT+TGG | 0.361585 | 6_1:-13330050 | None:intergenic |
| AACATGGGATTGCTCTAGTT+TGG | 0.367247 | 6_1:+13326961 | Msa0876010:CDS |
| GTGAATGAAACCACATCTTT+GGG | 0.373664 | 6_1:+13327888 | Msa0876010:CDS |
| AATGTATTATTAATAATAAC+AGG | 0.390146 | 6_1:-13328125 | None:intergenic |
| TCCTAGAAGCCTTGCCGAAA+GGG | 0.399735 | 6_1:+13330088 | Msa0876010:CDS |
| GTGATAATGGTGGCAACATA+TGG | 0.407449 | 6_1:+13327131 | Msa0876010:CDS |
| AGAAACCGTAACATTGGAAA+TGG | 0.415770 | 6_1:+13327920 | Msa0876010:CDS |
| AATATTCTCTGAATGATTAA+CGG | 0.422624 | 6_1:-13328057 | None:intergenic |
| TGTTTCCATTTCCAATGTTA+CGG | 0.435466 | 6_1:-13327925 | None:intergenic |
| TGTCAATAGCATTGTGGCTC+CGG | 0.447696 | 6_1:+13328247 | Msa0876010:CDS |
| TGCCGCGATTTCCTCTTTAT+AGG | 0.449812 | 6_1:+13325021 | Msa0876010:CDS |
| GATTGTTCCAAACATTGATA+AGG | 0.462084 | 6_1:+13330154 | Msa0876010:CDS |
| TGCAGCAACATCTTCAGTCC+AGG | 0.464926 | 6_1:+13328025 | Msa0876010:CDS |
| GTGGTTTCATTCACCGGAGT+TGG | 0.468531 | 6_1:-13327879 | None:intergenic |
| TGCAGTATTTATAGAAGTCA+TGG | 0.469703 | 6_1:+13324957 | Msa0876010:CDS |
| CTGCTCCCTTTGCGACCTCA+AGG | 0.470655 | 6_1:-13327992 | None:intergenic |
| AAAGATGTGGTTTCATTCAC+CGG | 0.472431 | 6_1:-13327885 | None:intergenic |
| AAACCACGGAGAAGTGATAA+TGG | 0.481236 | 6_1:+13327118 | Msa0876010:CDS |
| ATTACACACTTCCTATAAAG+AGG | 0.487042 | 6_1:-13325032 | None:intergenic |
| CACATCAGAAATGTTAGACT+TGG | 0.499859 | 6_1:+13330287 | Msa0876010:CDS |
| ATCGACATCAACTCCAACTC+CGG | 0.502855 | 6_1:+13327866 | Msa0876010:CDS |
| TTTAAGGCTTTCTCGCAGAC+GGG | 0.511219 | 6_1:-13328224 | None:intergenic |
| GTTTAGATTGTTCGCAACAT+GGG | 0.526284 | 6_1:+13326946 | Msa0876010:CDS |
| GTTAGAAGAAAATCATGTAA+TGG | 0.528030 | 6_1:+13327001 | Msa0876010:CDS |
| ATCATATCTAACAATTTCAT+CGG | 0.531133 | 6_1:-13328171 | None:intergenic |
| ATTTAAGGCTTTCTCGCAGA+CGG | 0.531356 | 6_1:-13328225 | None:intergenic |
| GTCATCAGAGATGTTTGTTG+TGG | 0.533598 | 6_1:+13329998 | Msa0876010:CDS |
| TGTTTCCTTCCCCAAAGATG+TGG | 0.533797 | 6_1:-13327898 | None:intergenic |
| GGAGGGTGCTCTAATACATC+CGG | 0.534401 | 6_1:+13328268 | Msa0876010:CDS |
| TTCATCATCAATTCCGACAC+CGG | 0.539964 | 6_1:+13328079 | Msa0876010:CDS |
| ATCCTAGAAGCCTTGCCGAA+AGG | 0.543719 | 6_1:+13330087 | Msa0876010:CDS |
| CAATAGCATTGTGGCTCCGG+AGG | 0.546607 | 6_1:+13328250 | Msa0876010:CDS |
| GCAAAGGGAGCAGCAAGGCT+CGG | 0.548575 | 6_1:+13328002 | Msa0876010:CDS |
| GGAAACAGAAACCGTAACAT+TGG | 0.549275 | 6_1:+13327914 | Msa0876010:CDS |
| TCGCGGCACGCCATTATACA+AGG | 0.549438 | 6_1:-13325006 | None:intergenic |
| TTCTTCTTACCCTTTCGGCA+AGG | 0.550067 | 6_1:-13330097 | None:intergenic |
| TGTTTAGATTGTTCGCAACA+TGG | 0.558944 | 6_1:+13326945 | Msa0876010:CDS |
| ATTACCCTTGAGGTCGCAAA+GGG | 0.559166 | 6_1:+13327987 | Msa0876010:CDS |
| CCGAAAGGGTAAGAAGAACT+CGG | 0.565752 | 6_1:+13330102 | Msa0876010:CDS |
| CATGTAATGGAAAATGCTCA+AGG | 0.571038 | 6_1:+13327014 | Msa0876010:CDS |
| TTACTTTATGCAGACTGTGA+GGG | 0.574387 | 6_1:+13330447 | Msa0876010:intron |
| TGCTCCCTTTGCGACCTCAA+GGG | 0.582048 | 6_1:-13327991 | None:intergenic |
| GCAGCAACATCTTCAGTCCA+GGG | 0.586147 | 6_1:+13328026 | Msa0876010:CDS |
| GCAGTATTTATAGAAGTCAT+GGG | 0.592279 | 6_1:+13324958 | Msa0876010:CDS |
| ACCTCAAGGGTAATATGGAG+TGG | 0.592342 | 6_1:-13327978 | None:intergenic |
| TCCACTCCATATTACCCTTG+AGG | 0.601850 | 6_1:+13327977 | Msa0876010:CDS |
| TGAAACCACATCTTTGGGGA+AGG | 0.608949 | 6_1:+13327893 | Msa0876010:CDS |
| AATAGCATTGTGGCTCCGGA+GGG | 0.612809 | 6_1:+13328251 | Msa0876010:CDS |
| TTGTAATTCCAGAGAAACCA+CGG | 0.617579 | 6_1:+13327104 | Msa0876010:intron |
| TGCACTCAATCTGAAGAACA+AGG | 0.620291 | 6_1:-13324938 | None:intergenic |
| TATTACCCTTGAGGTCGCAA+AGG | 0.621638 | 6_1:+13327986 | Msa0876010:CDS |
| CTTAAATGTCAATAGCATTG+TGG | 0.622794 | 6_1:+13328241 | Msa0876010:CDS |
| GTATCAGTTACCACCGGTGT+CGG | 0.623609 | 6_1:-13328092 | None:intergenic |
| GCAACATATGGAGGTAACAA+TGG | 0.625555 | 6_1:+13327143 | Msa0876010:CDS |
| GGATGTATTAGAGCACCCTC+CGG | 0.626630 | 6_1:-13328266 | None:intergenic |
| ATTACTTTATGCAGACTGTG+AGG | 0.629194 | 6_1:+13330446 | Msa0876010:intron |
| ATCATCAATTCCGACACCGG+TGG | 0.630872 | 6_1:+13328082 | Msa0876010:CDS |
| ATGTAATGGAAAATGCTCAA+GGG | 0.633542 | 6_1:+13327015 | Msa0876010:CDS |
| ATAATGGTGGCAACATATGG+AGG | 0.642354 | 6_1:+13327134 | Msa0876010:CDS |
| GCACGCCATTATACAAGGCG+CGG | 0.652086 | 6_1:-13325001 | None:intergenic |
| CAGCAACATCTTCAGTCCAG+GGG | 0.653307 | 6_1:+13328027 | Msa0876010:CDS |
| TGAATGAAACCACATCTTTG+GGG | 0.654790 | 6_1:+13327889 | Msa0876010:CDS |
| TTCCTATAAAGAGGAAATCG+CGG | 0.658751 | 6_1:-13325023 | None:intergenic |
| GCACTCAATCTGAAGAACAA+GGG | 0.668619 | 6_1:-13324937 | None:intergenic |
| TGAGAAGTATCAGTTACCAC+CGG | 0.673636 | 6_1:-13328098 | None:intergenic |
| AGGTCGCAAAGGGAGCAGCA+AGG | 0.677380 | 6_1:+13327997 | Msa0876010:CDS |
| CCACCATTATCACTTCTCCG+TGG | 0.682835 | 6_1:-13327121 | None:intergenic |
| CCACGGAGAAGTGATAATGG+TGG | 0.710292 | 6_1:+13327121 | Msa0876010:CDS |
| AGCAACATCTTCAGTCCAGG+GGG | 0.718415 | 6_1:+13328028 | Msa0876010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATCTTTGAAATAAA+AGG | - | chr6_1:13327612-13327631 | None:intergenic | 10.0% |
| !! | AATGTATTATTAATAATAAC+AGG | - | chr6_1:13328128-13328147 | None:intergenic | 10.0% |
| !!! | CAATTTTATACATATTTCAA+AGG | - | chr6_1:13325732-13325751 | None:intergenic | 15.0% |
| !! | TGTATAAAATTGAAATGTAT+AGG | + | chr6_1:13325740-13325759 | Msa0876010:intron | 15.0% |
| !!! | CAATTTTATACATATTTCAA+AGG | - | chr6_1:13325732-13325751 | None:intergenic | 15.0% |
| !! | TGTATAAAATTGAAATGTAT+AGG | + | chr6_1:13325740-13325759 | Msa0876010:intron | 15.0% |
| !!! | AAGTTTGTTATATTTGATTT+CGG | + | chr6_1:13327510-13327529 | Msa0876010:intron | 15.0% |
| !! | CTCAATAAATATCATTTAAA+CGG | - | chr6_1:13328445-13328464 | None:intergenic | 15.0% |
| !!! | TAGTTGAAAAAAGTATTTTT+TGG | - | chr6_1:13328740-13328759 | None:intergenic | 15.0% |
| !!! | ATCATGATTATCTATTTTAA+TGG | + | chr6_1:13328985-13329004 | Msa0876010:intron | 15.0% |
| !! | AATAGTAAAAGTCTATATTA+TGG | + | chr6_1:13329766-13329785 | Msa0876010:intron | 15.0% |
| !! | GTTATACATTGTTTAATTAT+TGG | + | chr6_1:13330253-13330272 | Msa0876010:intron | 15.0% |
| !! | AGATCTTAAAAAACAATTAA+AGG | + | chr6_1:13330326-13330345 | Msa0876010:CDS | 15.0% |
| !! | ATTAAAATATATATTAGTGC+AGG | - | chr6_1:13330428-13330447 | None:intergenic | 15.0% |
| !!! | TAATTCTTTTCAAAAGAAAG+TGG | - | chr6_1:13325322-13325341 | None:intergenic | 20.0% |
| !! | ATGTATTTAATTCTGACATT+AGG | + | chr6_1:13325561-13325580 | Msa0876010:intron | 20.0% |
| !!! | TTGTTTTACATTGTATATAC+TGG | + | chr6_1:13326062-13326081 | Msa0876010:intron | 20.0% |
| !!! | TTGTTTTACATTGTATATAC+TGG | + | chr6_1:13326062-13326081 | Msa0876010:intron | 20.0% |
| !! | AATATTCTCTGAATGATTAA+CGG | - | chr6_1:13328060-13328079 | None:intergenic | 20.0% |
| !! | ATCATATCTAACAATTTCAT+CGG | - | chr6_1:13328174-13328193 | None:intergenic | 20.0% |
| !! | ATAAATATCATTTAAACGGT+GGG | - | chr6_1:13328441-13328460 | None:intergenic | 20.0% |
| !! | AATAAATATCATTTAAACGG+TGG | - | chr6_1:13328442-13328461 | None:intergenic | 20.0% |
| !!! | AGTAATATAACTTGTTTGAT+TGG | - | chr6_1:13328680-13328699 | None:intergenic | 20.0% |
| !! | ATATAATATTAGCGAAAAGA+CGG | + | chr6_1:13328706-13328725 | Msa0876010:intron | 20.0% |
| !! | TTATAATTGAGATAACGAAA+AGG | + | chr6_1:13329099-13329118 | Msa0876010:intron | 20.0% |
| !! | AATATCCTTCATTTGTAAAT+GGG | - | chr6_1:13329421-13329440 | None:intergenic | 20.0% |
| !! | AAATATCCTTCATTTGTAAA+TGG | - | chr6_1:13329422-13329441 | None:intergenic | 20.0% |
| !!! | AGTAATATAACTTGTTTGAT+TGG | - | chr6_1:13328680-13328699 | None:intergenic | 20.0% |
| !! | TCATGCAATTTATACTGTTT+TGG | - | chr6_1:13325143-13325162 | None:intergenic | 25.0% |
| !! | GTTCAAATACCACATTTTTA+GGG | - | chr6_1:13325293-13325312 | None:intergenic | 25.0% |
| ! | TTTCAAAAGAAAGTGGAAAA+AGG | - | chr6_1:13325315-13325334 | None:intergenic | 25.0% |
| ! | AAAAACTAAATCAAGCAACA+TGG | - | chr6_1:13325695-13325714 | None:intergenic | 25.0% |
| !!! | ATAATGTAGCACAGTTTTTT+AGG | + | chr6_1:13325840-13325859 | Msa0876010:intron | 25.0% |
| !!! | TAATGTAGCACAGTTTTTTA+GGG | + | chr6_1:13325841-13325860 | Msa0876010:intron | 25.0% |
| ! | AAAATGTGTTTAATCCAACT+TGG | + | chr6_1:13325891-13325910 | Msa0876010:intron | 25.0% |
| ! | ATGAAAAATAGCTCTTAATG+TGG | + | chr6_1:13325929-13325948 | Msa0876010:intron | 25.0% |
| ! | ATGTATTCAATTCTGACATT+AGG | + | chr6_1:13326402-13326421 | Msa0876010:intron | 25.0% |
| ! | AAAAACTAAATCAAGCAACA+TGG | - | chr6_1:13325695-13325714 | None:intergenic | 25.0% |
| ! | TGCTACATTATTGATAGATT+AGG | - | chr6_1:13325831-13325850 | None:intergenic | 25.0% |
| !!! | ATAATGTAGCACAGTTTTTT+AGG | + | chr6_1:13325840-13325859 | Msa0876010:intron | 25.0% |
| !!! | TAATGTAGCACAGTTTTTTA+GGG | + | chr6_1:13325841-13325860 | Msa0876010:intron | 25.0% |
| ! | AAAATGTGTTTAATCCAACT+TGG | + | chr6_1:13325891-13325910 | Msa0876010:intron | 25.0% |
| ! | ATGAAAAATAGCTCTTAATG+TGG | + | chr6_1:13325929-13325948 | Msa0876010:intron | 25.0% |
| !!! | TGGTCATTTTAACTAATTCA+TGG | + | chr6_1:13326790-13326809 | Msa0876010:intron | 25.0% |
| !!! | GGTCATTTTAACTAATTCAT+GGG | + | chr6_1:13326791-13326810 | Msa0876010:intron | 25.0% |
| ! | GTTAGAAGAAAATCATGTAA+TGG | + | chr6_1:13327001-13327020 | Msa0876010:CDS | 25.0% |
| !!! | TGTTTTTTCACTAACATTGT+GGG | - | chr6_1:13327220-13327239 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTCACTAACATTG+TGG | - | chr6_1:13327221-13327240 | None:intergenic | 25.0% |
| ! | AGGAAAAAAAAATGTGCAAA+AGG | + | chr6_1:13328384-13328403 | Msa0876010:intron | 25.0% |
| ! | GTTGTCAATAATGAATAATG+AGG | + | chr6_1:13328467-13328486 | Msa0876010:intron | 25.0% |
| ! | TGTAAGAAAGTTCTATACAT+TGG | + | chr6_1:13328537-13328556 | Msa0876010:intron | 25.0% |
| ! | AAACCAAAGAAGGTTAATAT+GGG | - | chr6_1:13328568-13328587 | None:intergenic | 25.0% |
| ! | AAAACCAAAGAAGGTTAATA+TGG | - | chr6_1:13328569-13328588 | None:intergenic | 25.0% |
| !! | GTAATATACCTTGTTTGATT+GGG | - | chr6_1:13328794-13328813 | None:intergenic | 25.0% |
| !! | AGTAATATACCTTGTTTGAT+TGG | - | chr6_1:13328795-13328814 | None:intergenic | 25.0% |
| ! | TTTCGCTAGTATTATATAGA+GGG | - | chr6_1:13328818-13328837 | None:intergenic | 25.0% |
| !! | TTTTCGCTAGTATTATATAG+AGG | - | chr6_1:13328819-13328838 | None:intergenic | 25.0% |
| ! | ATATAATACTAGCGAAAAGA+CGG | + | chr6_1:13328821-13328840 | Msa0876010:intron | 25.0% |
| ! | ACTATGGAAAAAGTTGTTTA+AGG | + | chr6_1:13329076-13329095 | Msa0876010:intron | 25.0% |
| ! | CAATACAAATAACACAGTAT+GGG | - | chr6_1:13329207-13329226 | None:intergenic | 25.0% |
| ! | TCAATACAAATAACACAGTA+TGG | - | chr6_1:13329208-13329227 | None:intergenic | 25.0% |
| ! | CAATACAATTAACAGAGTAT+GGG | - | chr6_1:13329263-13329282 | None:intergenic | 25.0% |
| ! | TCAATACAATTAACAGAGTA+TGG | - | chr6_1:13329264-13329283 | None:intergenic | 25.0% |
| ! | AAGTCAATATTAACCTTCTT+TGG | + | chr6_1:13329387-13329406 | Msa0876010:intron | 25.0% |
| !! | CAATTTAAGTTAGTGTAGTT+AGG | - | chr6_1:13329481-13329500 | None:intergenic | 25.0% |
| !!! | TATTGTACTTGCTTTTCAAT+TGG | - | chr6_1:13329543-13329562 | None:intergenic | 25.0% |
| !! | TTTAAAACTGCAATTTAGAG+AGG | + | chr6_1:13329666-13329685 | Msa0876010:intron | 25.0% |
| ! | TAGTGTACCATTATTAACAA+TGG | + | chr6_1:13329696-13329715 | Msa0876010:intron | 25.0% |
| ! | CAAACATAATTGTCTCAAAA+GGG | - | chr6_1:13330223-13330242 | None:intergenic | 25.0% |
| ! | ACAAACATAATTGTCTCAAA+AGG | - | chr6_1:13330224-13330243 | None:intergenic | 25.0% |
| TGCAGTATTTATAGAAGTCA+TGG | + | chr6_1:13324957-13324976 | Msa0876010:CDS | 30.0% | |
| GCAGTATTTATAGAAGTCAT+GGG | + | chr6_1:13324958-13324977 | Msa0876010:CDS | 30.0% | |
| ATTACACACTTCCTATAAAG+AGG | - | chr6_1:13325035-13325054 | None:intergenic | 30.0% | |
| ! | AAAATTTGAAGTCTGTTCGA+AGG | - | chr6_1:13325106-13325125 | None:intergenic | 30.0% |
| CCTGTCATTACGTAATATTA+GGG | - | chr6_1:13325193-13325212 | None:intergenic | 30.0% | |
| TCCTGTCATTACGTAATATT+AGG | - | chr6_1:13325194-13325213 | None:intergenic | 30.0% | |
| ! | ACAGAGTACTACGAATATTT+AGG | + | chr6_1:13325221-13325240 | Msa0876010:intron | 30.0% |
| ! | CAGAGTACTACGAATATTTA+GGG | + | chr6_1:13325222-13325241 | Msa0876010:intron | 30.0% |
| !! | ATTTTTAGGGATTAAGGGTT+CGG | - | chr6_1:13325280-13325299 | None:intergenic | 30.0% |
| !! | ACCACATTTTTAGGGATTAA+GGG | - | chr6_1:13325285-13325304 | None:intergenic | 30.0% |
| !! | TACCACATTTTTAGGGATTA+AGG | - | chr6_1:13325286-13325305 | None:intergenic | 30.0% |
| ! | GGTTCAAATACCACATTTTT+AGG | - | chr6_1:13325294-13325313 | None:intergenic | 30.0% |
| !! | CCAACTTTTGCTATAATTTC+AGG | - | chr6_1:13325458-13325477 | None:intergenic | 30.0% |
| CCTGAAATTATAGCAAAAGT+TGG | + | chr6_1:13325455-13325474 | Msa0876010:intron | 30.0% | |
| !!! | TGCTTGATTTAGTTTTTTCC+AGG | + | chr6_1:13325698-13325717 | Msa0876010:intron | 30.0% |
| !!! | TTTAGTTTTTTCCAGGACTT+AGG | + | chr6_1:13325705-13325724 | Msa0876010:intron | 30.0% |
| TGGTCATCTTAACTAATTCA+TGG | + | chr6_1:13325949-13325968 | Msa0876010:intron | 30.0% | |
| GGTCATCTTAACTAATTCAT+GGG | + | chr6_1:13325950-13325969 | Msa0876010:intron | 30.0% | |
| !! | CCAACTTTTGCTATAATTTC+AGG | - | chr6_1:13325458-13325477 | None:intergenic | 30.0% |
| CCTGAAATTATAGCAAAAGT+TGG | + | chr6_1:13325455-13325474 | Msa0876010:intron | 30.0% | |
| !!! | TGCTTGATTTAGTTTTTTCC+AGG | + | chr6_1:13325698-13325717 | Msa0876010:intron | 30.0% |
| !!! | TTTAGTTTTTTCCAGGACTT+AGG | + | chr6_1:13325705-13325724 | Msa0876010:intron | 30.0% |
| ! | ATGTAATGGAAAATGCTCAA+GGG | + | chr6_1:13327015-13327034 | Msa0876010:CDS | 30.0% |
| ! | TTGAATAGTGTTTTGTCTAG+TGG | + | chr6_1:13327574-13327593 | Msa0876010:intron | 30.0% |
| TATTTCCATCTCCAATGATA+CGG | - | chr6_1:13327721-13327740 | None:intergenic | 30.0% | |
| ATTGGAGATGGAAATAGAAA+CGG | + | chr6_1:13327725-13327744 | Msa0876010:intron | 30.0% | |
| TGTTTCCATTTCCAATGTTA+CGG | - | chr6_1:13327928-13327947 | None:intergenic | 30.0% | |
| CACAATGCTATTGACATTTA+AGG | - | chr6_1:13328243-13328262 | None:intergenic | 30.0% | |
| CTTAAATGTCAATAGCATTG+TGG | + | chr6_1:13328241-13328260 | Msa0876010:CDS | 30.0% | |
| ! | TTTAAGTCTTTTTGTAGCAC+CGG | - | chr6_1:13328290-13328309 | None:intergenic | 30.0% |
| ! | CAGTTTAAGTTAGTGTAGTT+AGG | - | chr6_1:13328656-13328675 | None:intergenic | 30.0% |
| ! | CAGTTTAAGTTAGTGTAGTT+AGG | - | chr6_1:13328656-13328675 | None:intergenic | 30.0% |
| TATAATACTAGCGAAAAGAC+GGG | + | chr6_1:13328822-13328841 | Msa0876010:intron | 30.0% | |
| ACCAACTACAATCTTTACTA+TGG | + | chr6_1:13329060-13329079 | Msa0876010:intron | 30.0% | |
| TCCATAGTAAAGATTGTAGT+TGG | - | chr6_1:13329064-13329083 | None:intergenic | 30.0% | |
| ! | ATAGCATGTTTTGTCTCTTT+TGG | - | chr6_1:13329323-13329342 | None:intergenic | 30.0% |
| TCTAACCCATTTACAAATGA+AGG | + | chr6_1:13329413-13329432 | Msa0876010:intron | 30.0% | |
| TCAATTGGATCTGAATTGAA+GGG | - | chr6_1:13329528-13329547 | None:intergenic | 30.0% | |
| TTCAATTGGATCTGAATTGA+AGG | - | chr6_1:13329529-13329548 | None:intergenic | 30.0% | |
| ! | TTTTGCATACACTAGTAGTA+GGG | - | chr6_1:13329606-13329625 | None:intergenic | 30.0% |
| ! | TTTTTGCATACACTAGTAGT+AGG | - | chr6_1:13329607-13329626 | None:intergenic | 30.0% |
| GTACCATTATTAACAATGGT+TGG | + | chr6_1:13329700-13329719 | Msa0876010:intron | 30.0% | |
| GATCCAACCATTGTTAATAA+TGG | - | chr6_1:13329706-13329725 | None:intergenic | 30.0% | |
| TCTATTAGATCTTGTGATAG+AGG | + | chr6_1:13329733-13329752 | Msa0876010:intron | 30.0% | |
| GGAAAAATAGGAATAGATAG+TGG | - | chr6_1:13329913-13329932 | None:intergenic | 30.0% | |
| ! | TACATTCTGAGAGGAAAAAT+AGG | - | chr6_1:13329925-13329944 | None:intergenic | 30.0% |
| ! | TATTTTTCCTCTCAGAATGT+AGG | + | chr6_1:13329924-13329943 | Msa0876010:intron | 30.0% |
| GATTGTTCCAAACATTGATA+AGG | + | chr6_1:13330154-13330173 | Msa0876010:CDS | 30.0% | |
| ATTCTGACCTTATCAATGTT+TGG | - | chr6_1:13330164-13330183 | None:intergenic | 30.0% | |
| TAACTGCATGGAAATGAATA+GGG | - | chr6_1:13330388-13330407 | None:intergenic | 30.0% | |
| TTAACTGCATGGAAATGAAT+AGG | - | chr6_1:13330389-13330408 | None:intergenic | 30.0% | |
| ! | AAGAACAAGGGTTACGATTT+TGG | - | chr6_1:13324928-13324947 | None:intergenic | 35.0% |
| TTCCTATAAAGAGGAAATCG+CGG | - | chr6_1:13325026-13325045 | None:intergenic | 35.0% | |
| CCCTAATATTACGTAATGAC+AGG | + | chr6_1:13325190-13325209 | Msa0876010:intron | 35.0% | |
| !! | TTTTTAGGGATTAAGGGTTC+GGG | - | chr6_1:13325279-13325298 | None:intergenic | 35.0% |
| ACCCTTAATCCCTAAAAATG+TGG | + | chr6_1:13325281-13325300 | Msa0876010:intron | 35.0% | |
| ! | GTTCGACTAAGCTTTATATG+AGG | + | chr6_1:13325594-13325613 | Msa0876010:intron | 35.0% |
| TCAATTAATACAGACCCCAA+CGG | + | chr6_1:13325629-13325648 | Msa0876010:intron | 35.0% | |
| ATGTGTTTAATCCAACTTGG+TGG | + | chr6_1:13325894-13325913 | Msa0876010:intron | 35.0% | |
| ACTGGATCATATAAAACTGC+AGG | + | chr6_1:13326080-13326099 | Msa0876010:intron | 35.0% | |
| TGTTTAGATTGTTCGCAACA+TGG | + | chr6_1:13326104-13326123 | Msa0876010:intron | 35.0% | |
| GTTTAGATTGTTCGCAACAT+GGG | + | chr6_1:13326105-13326124 | Msa0876010:intron | 35.0% | |
| ! | GTTCGACTAAGCTTTATATG+AGG | + | chr6_1:13325594-13325613 | Msa0876010:intron | 35.0% |
| TCAATTAATACAGACCCCAA+CGG | + | chr6_1:13325629-13325648 | Msa0876010:intron | 35.0% | |
| ATGTGTTTAATCCAACTTGG+TGG | + | chr6_1:13325894-13325913 | Msa0876010:intron | 35.0% | |
| ACTGGATCATATAAAACTGC+AGG | + | chr6_1:13326080-13326099 | Msa0876010:intron | 35.0% | |
| TGTTTAGATTGTTCGCAACA+TGG | + | chr6_1:13326104-13326123 | Msa0876010:intron | 35.0% | |
| GTTTAGATTGTTCGCAACAT+GGG | + | chr6_1:13326105-13326124 | Msa0876010:intron | 35.0% | |
| ! | CATGTAATGGAAAATGCTCA+AGG | + | chr6_1:13327014-13327033 | Msa0876010:CDS | 35.0% |
| ! | CGTGTGATATTTGCGATTTT+TGG | - | chr6_1:13327047-13327066 | None:intergenic | 35.0% |
| ATGAGGAAACGTAGCTAATT+TGG | + | chr6_1:13327068-13327087 | Msa0876010:intron | 35.0% | |
| TTGTAATTCCAGAGAAACCA+CGG | + | chr6_1:13327104-13327123 | Msa0876010:intron | 35.0% | |
| ! | TTTTTCACTAACATTGTGGG+TGG | - | chr6_1:13327217-13327236 | None:intergenic | 35.0% |
| TCATATAGCATTGCTCTTCT+TGG | + | chr6_1:13327383-13327402 | Msa0876010:intron | 35.0% | |
| AAAGATGTGGTTTCATTCAC+CGG | - | chr6_1:13327888-13327907 | None:intergenic | 35.0% | |
| GTGAATGAAACCACATCTTT+GGG | + | chr6_1:13327888-13327907 | Msa0876010:CDS | 35.0% | |
| TGAATGAAACCACATCTTTG+GGG | + | chr6_1:13327889-13327908 | Msa0876010:CDS | 35.0% | |
| AGAAACCGTAACATTGGAAA+TGG | + | chr6_1:13327920-13327939 | Msa0876010:CDS | 35.0% | |
| ! | TATGCAAGATTAGTTAGCGA+AGG | + | chr6_1:13328313-13328332 | Msa0876010:intron | 35.0% |
| !! | TAATGAGGTACCTTTTACTG+CGG | + | chr6_1:13328346-13328365 | Msa0876010:intron | 35.0% |
| ! | TTTGAAGTTACCGCAGTAAA+AGG | - | chr6_1:13328359-13328378 | None:intergenic | 35.0% |
| AATATCATTTAAACGGTGGG+CGG | - | chr6_1:13328438-13328457 | None:intergenic | 35.0% | |
| TAGCCCATATTAACCTTCTT+TGG | + | chr6_1:13328562-13328581 | Msa0876010:intron | 35.0% | |
| ATGTGCAAGAAAACCAAAGA+AGG | - | chr6_1:13328578-13328597 | None:intergenic | 35.0% | |
| TCTTGCACATTGACAAATGA+AGG | + | chr6_1:13328588-13328607 | Msa0876010:intron | 35.0% | |
| TTAAACTGCCCAATCAAACA+AGG | + | chr6_1:13328783-13328802 | Msa0876010:intron | 35.0% | |
| ACTTAGCGCAATAAAAAGAG+TGG | - | chr6_1:13328867-13328886 | None:intergenic | 35.0% | |
| ! | ATGTTTTGTCTCTTTTGGAC+TGG | - | chr6_1:13329318-13329337 | None:intergenic | 35.0% |
| !! | ATGGGTTAGAAAACCAAAGA+AGG | - | chr6_1:13329403-13329422 | None:intergenic | 35.0% |
| TAGTTAGGATTGATCGTAGT+TGG | - | chr6_1:13329466-13329485 | None:intergenic | 35.0% | |
| TCGATTCAATTCTTAGCACA+TGG | + | chr6_1:13329639-13329658 | Msa0876010:intron | 35.0% | |
| TTAGGGTTACCAATAGCTTT+GGG | - | chr6_1:13329832-13329851 | None:intergenic | 35.0% | |
| ATTAGGGTTACCAATAGCTT+TGG | - | chr6_1:13329833-13329852 | None:intergenic | 35.0% | |
| CAAAGTGGAGGGAAAAATTA+GGG | - | chr6_1:13329849-13329868 | None:intergenic | 35.0% | |
| GTTAATGTTTGCAAAGTGGA+GGG | - | chr6_1:13329860-13329879 | None:intergenic | 35.0% | |
| AGTTAATGTTTGCAAAGTGG+AGG | - | chr6_1:13329861-13329880 | None:intergenic | 35.0% | |
| AGGAGTTAATGTTTGCAAAG+TGG | - | chr6_1:13329864-13329883 | None:intergenic | 35.0% | |
| AACATCTCTGATGACTTTCT+TGG | - | chr6_1:13329993-13330012 | None:intergenic | 35.0% | |
| CACATCAGAAATGTTAGACT+TGG | + | chr6_1:13330287-13330306 | Msa0876010:CDS | 35.0% | |
| AACTGCATGGAAATGAATAG+GGG | - | chr6_1:13330387-13330406 | None:intergenic | 35.0% | |
| ACTAATCGTGATTAACTGCA+TGG | - | chr6_1:13330400-13330419 | None:intergenic | 35.0% | |
| ATTACTTTATGCAGACTGTG+AGG | + | chr6_1:13330446-13330465 | Msa0876010:intron | 35.0% | |
| TTACTTTATGCAGACTGTGA+GGG | + | chr6_1:13330447-13330466 | Msa0876010:intron | 35.0% | |
| GCACTCAATCTGAAGAACAA+GGG | - | chr6_1:13324940-13324959 | None:intergenic | 40.0% | |
| TGCACTCAATCTGAAGAACA+AGG | - | chr6_1:13324941-13324960 | None:intergenic | 40.0% | |
| TTGCTTCAAAAATCGCAGCA+CGG | + | chr6_1:13325056-13325075 | Msa0876010:intron | 40.0% | |
| !! | TTTTAGGGATTAAGGGTTCG+GGG | - | chr6_1:13325278-13325297 | None:intergenic | 40.0% |
| TGAGTCAAACGCCAATCAAA+TGG | + | chr6_1:13325368-13325387 | Msa0876010:intron | 40.0% | |
| !!! | GTCATTGTCGCGTCATTTTT+CGG | - | chr6_1:13325405-13325424 | None:intergenic | 40.0% |
| ACTATCAGGCCAATCCAAAT+TGG | + | chr6_1:13325423-13325442 | Msa0876010:intron | 40.0% | |
| ATCAAGCAACATGGAAGAGT+GGG | - | chr6_1:13325686-13325705 | None:intergenic | 40.0% | |
| AATCAAGCAACATGGAAGAG+TGG | - | chr6_1:13325687-13325706 | None:intergenic | 40.0% | |
| ATTTCAAAGGACCTAAGTCC+TGG | - | chr6_1:13325719-13325738 | None:intergenic | 40.0% | |
| TTCTTGTTAGTCCACCAAGT+TGG | - | chr6_1:13325908-13325927 | None:intergenic | 40.0% | |
| AACATGGGATTGCTCTAGTT+TGG | + | chr6_1:13326120-13326139 | Msa0876010:intron | 40.0% | |
| TGAGTCAAACGCCAATCAAA+TGG | + | chr6_1:13325368-13325387 | Msa0876010:intron | 40.0% | |
| !!! | GTCATTTTTTGGACGGTCAA+AGG | - | chr6_1:13326235-13326254 | None:intergenic | 40.0% |
| !!! | TTGTCGCGTCATTTTTTGGA+CGG | - | chr6_1:13326242-13326261 | None:intergenic | 40.0% |
| !!! | GTCATTGTCGCGTCATTTTT+TGG | - | chr6_1:13325405-13325424 | None:intergenic | 40.0% |
| ATCAAGCAACATGGAAGAGT+GGG | - | chr6_1:13325686-13325705 | None:intergenic | 40.0% | |
| AATCAAGCAACATGGAAGAG+TGG | - | chr6_1:13325687-13325706 | None:intergenic | 40.0% | |
| ATTTCAAAGGACCTAAGTCC+TGG | - | chr6_1:13325719-13325738 | None:intergenic | 40.0% | |
| TTCTTGTTAGTCCACCAAGT+TGG | - | chr6_1:13325908-13325927 | None:intergenic | 40.0% | |
| AACATGGGATTGCTCTAGTT+TGG | + | chr6_1:13326120-13326139 | Msa0876010:intron | 40.0% | |
| TCGCAAATATCACACGAATG+AGG | + | chr6_1:13327051-13327070 | Msa0876010:intron | 40.0% | |
| AAACCACGGAGAAGTGATAA+TGG | + | chr6_1:13327118-13327137 | Msa0876010:CDS | 40.0% | |
| !! | GTGATAATGGTGGCAACATA+TGG | + | chr6_1:13327131-13327150 | Msa0876010:CDS | 40.0% |
| ATAATGGTGGCAACATATGG+AGG | + | chr6_1:13327134-13327153 | Msa0876010:CDS | 40.0% | |
| GCAACATATGGAGGTAACAA+TGG | + | chr6_1:13327143-13327162 | Msa0876010:CDS | 40.0% | |
| AACGAACGTGTTTCGTTGTT+GGG | - | chr6_1:13327317-13327336 | None:intergenic | 40.0% | |
| AAACGAACGTGTTTCGTTGT+TGG | - | chr6_1:13327318-13327337 | None:intergenic | 40.0% | |
| TGCTCTTCTTGGCTTATCAT+AGG | + | chr6_1:13327394-13327413 | Msa0876010:intron | 40.0% | |
| TTTCCAATGTCGTGTTGTCA+AGG | - | chr6_1:13327659-13327678 | None:intergenic | 40.0% | |
| TGACAACACGACATTGGAAA+AGG | + | chr6_1:13327659-13327678 | Msa0876010:intron | 40.0% | |
| TGTAGCGTTATCAAGAGTTG+CGG | - | chr6_1:13327694-13327713 | None:intergenic | 40.0% | |
| AGAATCCGTATCATTGGAGA+TGG | + | chr6_1:13327713-13327732 | Msa0876010:intron | 40.0% | |
| GCAGCATGAATCTATGAACA+TGG | + | chr6_1:13327749-13327768 | Msa0876010:intron | 40.0% | |
| GGTGAATGAAACCACATCTT+TGG | + | chr6_1:13327887-13327906 | Msa0876010:CDS | 40.0% | |
| GGAAACAGAAACCGTAACAT+TGG | + | chr6_1:13327914-13327933 | Msa0876010:CDS | 40.0% | |
| TTCATCATCAATTCCGACAC+CGG | + | chr6_1:13328079-13328098 | Msa0876010:CDS | 40.0% | |
| !! | TGAGAAGTATCAGTTACCAC+CGG | - | chr6_1:13328101-13328120 | None:intergenic | 40.0% |
| ! | ATTTAAGGCTTTCTCGCAGA+CGG | - | chr6_1:13328228-13328247 | None:intergenic | 40.0% |
| GAAGGCTGCTGTTAATAATG+AGG | + | chr6_1:13328331-13328350 | Msa0876010:intron | 40.0% | |
| ATATCATTTAAACGGTGGGC+GGG | - | chr6_1:13328437-13328456 | None:intergenic | 40.0% | |
| TCTTACTTCCCCAAAGCTAT+TGG | + | chr6_1:13329820-13329839 | Msa0876010:intron | 40.0% | |
| ! | TAGGGTTACCAATAGCTTTG+GGG | - | chr6_1:13329831-13329850 | None:intergenic | 40.0% |
| GCAAAGTGGAGGGAAAAATT+AGG | - | chr6_1:13329850-13329869 | None:intergenic | 40.0% | |
| ! | GTCATCAGAGATGTTTGTTG+TGG | + | chr6_1:13329998-13330017 | Msa0876010:CDS | 40.0% |
| ATACTGCTTGGAACAGAATC+TGG | - | chr6_1:13330041-13330060 | None:intergenic | 40.0% | |
| TGCCGCGATTTCCTCTTTAT+AGG | + | chr6_1:13325021-13325040 | Msa0876010:CDS | 45.0% | |
| TTTAGGGATTAAGGGTTCGG+GGG | - | chr6_1:13325277-13325296 | None:intergenic | 45.0% | |
| ! | ACGGTCTAAGGCCATTTGAT+TGG | - | chr6_1:13325382-13325401 | None:intergenic | 45.0% |
| !!! | GTCATTTTTCGGACGGTCTA+AGG | - | chr6_1:13325394-13325413 | None:intergenic | 45.0% |
| !!! | TTGTCGCGTCATTTTTCGGA+CGG | - | chr6_1:13325401-13325420 | None:intergenic | 45.0% |
| ATGACGCGACAATGACTATC+AGG | + | chr6_1:13325409-13325428 | Msa0876010:intron | 45.0% | |
| TTGCTATAATTTCAGGCCCC+AGG | - | chr6_1:13325451-13325470 | None:intergenic | 45.0% | |
| TCTGACATTAGGCTCATGAG+AGG | + | chr6_1:13325572-13325591 | Msa0876010:intron | 45.0% | |
| ACTTCATGACGAAGACCGTT+GGG | - | chr6_1:13325647-13325666 | None:intergenic | 45.0% | |
| AACTTCATGACGAAGACCGT+TGG | - | chr6_1:13325648-13325667 | None:intergenic | 45.0% | |
| GCGTAGACAAGCAAATACAG+TGG | - | chr6_1:13325976-13325995 | None:intergenic | 45.0% | |
| CGCTTGTAACTCTTCTTGCT+AGG | + | chr6_1:13326143-13326162 | Msa0876010:intron | 45.0% | |
| ACGGTCAAAGGCCATTTGAT+TGG | - | chr6_1:13326223-13326242 | None:intergenic | 45.0% | |
| ACCATCAGGCCAATCCAAAT+TGG | + | chr6_1:13326264-13326283 | Msa0876010:intron | 45.0% | |
| TTGCTATAATTTCAGGCCCC+AGG | - | chr6_1:13325451-13325470 | None:intergenic | 45.0% | |
| TCTGACATTAGGCTCATGAG+AGG | + | chr6_1:13325572-13325591 | Msa0876010:intron | 45.0% | |
| ACTTCATGACGAAGACCGTT+GGG | - | chr6_1:13325647-13325666 | None:intergenic | 45.0% | |
| AACTTCATGACGAAGACCGT+TGG | - | chr6_1:13325648-13325667 | None:intergenic | 45.0% | |
| GCGTAGACAAGCAAATACAG+TGG | - | chr6_1:13325976-13325995 | None:intergenic | 45.0% | |
| ATGCTTGCAACCTGTAGAAG+TGG | + | chr6_1:13327174-13327193 | Msa0876010:intron | 45.0% | |
| TGCAACCTGTAGAAGTGGTA+AGG | + | chr6_1:13327179-13327198 | Msa0876010:intron | 45.0% | |
| AACCTGTAGAAGTGGTAAGG+TGG | + | chr6_1:13327182-13327201 | Msa0876010:intron | 45.0% | |
| TGTCCTTGACAACACGACAT+TGG | + | chr6_1:13327653-13327672 | Msa0876010:intron | 45.0% | |
| CGCTACAGAATCCGTATCAT+TGG | + | chr6_1:13327707-13327726 | Msa0876010:intron | 45.0% | |
| GCATCAACGTCTCTTGATCA+TGG | + | chr6_1:13327822-13327841 | Msa0876010:intron | 45.0% | |
| ACGTCTCTTGATCATGGTCA+CGG | + | chr6_1:13327828-13327847 | Msa0876010:intron | 45.0% | |
| ATCGACATCAACTCCAACTC+CGG | + | chr6_1:13327866-13327885 | Msa0876010:CDS | 45.0% | |
| ! | TGAAACCACATCTTTGGGGA+AGG | + | chr6_1:13327893-13327912 | Msa0876010:CDS | 45.0% |
| TGTTTCCTTCCCCAAAGATG+TGG | - | chr6_1:13327901-13327920 | None:intergenic | 45.0% | |
| TCCACTCCATATTACCCTTG+AGG | + | chr6_1:13327977-13327996 | Msa0876010:CDS | 45.0% | |
| ACCTCAAGGGTAATATGGAG+TGG | - | chr6_1:13327981-13328000 | None:intergenic | 45.0% | |
| TTGCGACCTCAAGGGTAATA+TGG | - | chr6_1:13327986-13328005 | None:intergenic | 45.0% | |
| TATTACCCTTGAGGTCGCAA+AGG | + | chr6_1:13327986-13328005 | Msa0876010:CDS | 45.0% | |
| ATTACCCTTGAGGTCGCAAA+GGG | + | chr6_1:13327987-13328006 | Msa0876010:CDS | 45.0% | |
| ! | TTTAAGGCTTTCTCGCAGAC+GGG | - | chr6_1:13328227-13328246 | None:intergenic | 45.0% |
| TGTCAATAGCATTGTGGCTC+CGG | + | chr6_1:13328247-13328266 | Msa0876010:CDS | 45.0% | |
| TGCGGTAACTTCAAAGTCAC+AGG | + | chr6_1:13328364-13328383 | Msa0876010:intron | 45.0% | |
| TATCATTTAAACGGTGGGCG+GGG | - | chr6_1:13328436-13328455 | None:intergenic | 45.0% | |
| CTCTTTGCTCTGATACTGCT+TGG | - | chr6_1:13330053-13330072 | None:intergenic | 45.0% | |
| TTCTTCTTACCCTTTCGGCA+AGG | - | chr6_1:13330100-13330119 | None:intergenic | 45.0% | |
| CCGAGTTCTTCTTACCCTTT+CGG | - | chr6_1:13330105-13330124 | None:intergenic | 45.0% | |
| CCGAAAGGGTAAGAAGAACT+CGG | + | chr6_1:13330102-13330121 | Msa0876010:CDS | 45.0% | |
| !!! | ATATTTTTTTATTATATAGT+TGG | - | chr6_1:13329013-13329032 | None:intergenic | 5.0% |
| ATCGCAGCACGGCTTGAAAT+TGG | + | chr6_1:13325067-13325086 | Msa0876010:intron | 50.0% | |
| !! | GGGTTGGTTATACTGAGGGT+AGG | - | chr6_1:13325257-13325276 | None:intergenic | 50.0% |
| !! | TCGGGGGTTGGTTATACTGA+GGG | - | chr6_1:13325261-13325280 | None:intergenic | 50.0% |
| !! | TTCGGGGGTTGGTTATACTG+AGG | - | chr6_1:13325262-13325281 | None:intergenic | 50.0% |
| ! | GCCAATCCAAATTGGCTCCT+GGG | + | chr6_1:13325431-13325450 | Msa0876010:intron | 50.0% |
| ! | CCAATCCAAATTGGCTCCTG+GGG | + | chr6_1:13325432-13325451 | Msa0876010:intron | 50.0% |
| CTTCATGACGAAGACCGTTG+GGG | - | chr6_1:13325646-13325665 | None:intergenic | 50.0% | |
| ATGACGCGACAATGACCATC+AGG | + | chr6_1:13326250-13326269 | Msa0876010:intron | 50.0% | |
| !! | GCCAATTTGGATTGGCCTGA+TGG | - | chr6_1:13325427-13325446 | None:intergenic | 50.0% |
| ! | GCCAATCCAAATTGGCTCCT+GGG | + | chr6_1:13325431-13325450 | Msa0876010:intron | 50.0% |
| ! | CCAATCCAAATTGGCTCCTG+GGG | + | chr6_1:13325432-13325451 | Msa0876010:intron | 50.0% |
| CTTCATGACGAAGACCGTTG+GGG | - | chr6_1:13325646-13325665 | None:intergenic | 50.0% | |
| TCACTTCTCCGTGGTTTCTC+TGG | - | chr6_1:13327115-13327134 | None:intergenic | 50.0% | |
| CCACCATTATCACTTCTCCG+TGG | - | chr6_1:13327124-13327143 | None:intergenic | 50.0% | |
| !! | CCACGGAGAAGTGATAATGG+TGG | + | chr6_1:13327121-13327140 | Msa0876010:CDS | 50.0% |
| CACCACCTTACCACTTCTAC+AGG | - | chr6_1:13327187-13327206 | None:intergenic | 50.0% | |
| CTGTAGAAGTGGTAAGGTGG+TGG | + | chr6_1:13327185-13327204 | Msa0876010:intron | 50.0% | |
| ! | TTTCGTTGTTGGGAGGCATG+TGG | - | chr6_1:13327307-13327326 | None:intergenic | 50.0% |
| GAACGTGTTTCGTTGTTGGG+AGG | - | chr6_1:13327314-13327333 | None:intergenic | 50.0% | |
| !! | ACCTTATGCTGACTCCTGTG+CGG | - | chr6_1:13327802-13327821 | None:intergenic | 50.0% |
| CGTCTCTTGATCATGGTCAC+GGG | + | chr6_1:13327829-13327848 | Msa0876010:intron | 50.0% | |
| GTGGTTTCATTCACCGGAGT+TGG | - | chr6_1:13327882-13327901 | None:intergenic | 50.0% | |
| TGCAGCAACATCTTCAGTCC+AGG | + | chr6_1:13328025-13328044 | Msa0876010:CDS | 50.0% | |
| GCAGCAACATCTTCAGTCCA+GGG | + | chr6_1:13328026-13328045 | Msa0876010:CDS | 50.0% | |
| CAGCAACATCTTCAGTCCAG+GGG | + | chr6_1:13328027-13328046 | Msa0876010:CDS | 50.0% | |
| AGCAACATCTTCAGTCCAGG+GGG | + | chr6_1:13328028-13328047 | Msa0876010:CDS | 50.0% | |
| GATTAACGGAAACATCCCCC+TGG | - | chr6_1:13328046-13328065 | None:intergenic | 50.0% | |
| ATCATCAATTCCGACACCGG+TGG | + | chr6_1:13328082-13328101 | Msa0876010:CDS | 50.0% | |
| GTATCAGTTACCACCGGTGT+CGG | - | chr6_1:13328095-13328114 | None:intergenic | 50.0% | |
| AATAGCATTGTGGCTCCGGA+GGG | + | chr6_1:13328251-13328270 | Msa0876010:CDS | 50.0% | |
| ! | GGATGTATTAGAGCACCCTC+CGG | - | chr6_1:13328269-13328288 | None:intergenic | 50.0% |
| !! | GGAGGGTGCTCTAATACATC+CGG | + | chr6_1:13328268-13328287 | Msa0876010:CDS | 50.0% |
| TGCATACAAAACCCGCTCTC+AGG | + | chr6_1:13328408-13328427 | Msa0876010:intron | 50.0% | |
| GCATACAAAACCCGCTCTCA+GGG | + | chr6_1:13328409-13328428 | Msa0876010:intron | 50.0% | |
| ATCATTTAAACGGTGGGCGG+GGG | - | chr6_1:13328435-13328454 | None:intergenic | 50.0% | |
| TCGTACGCCTACATTCTGAG+AGG | - | chr6_1:13329934-13329953 | None:intergenic | 50.0% | |
| ATCCTAGAAGCCTTGCCGAA+AGG | + | chr6_1:13330087-13330106 | Msa0876010:CDS | 50.0% | |
| TCCTAGAAGCCTTGCCGAAA+GGG | + | chr6_1:13330088-13330107 | Msa0876010:CDS | 50.0% | |
| CTGGTTTCTGCATCTGCACT+TGG | - | chr6_1:13330482-13330501 | None:intergenic | 50.0% | |
| GCACGCCATTATACAAGGCG+CGG | - | chr6_1:13325004-13325023 | None:intergenic | 55.0% | |
| TCGCGGCACGCCATTATACA+AGG | - | chr6_1:13325009-13325028 | None:intergenic | 55.0% | |
| AGCACGGCTTGAAATTGGCG+TGG | + | chr6_1:13325072-13325091 | Msa0876010:intron | 55.0% | |
| ! | GGCCAATCCAAATTGGCTCC+TGG | + | chr6_1:13325430-13325449 | Msa0876010:intron | 55.0% |
| CCCCAGGAGCCAATTTGGAT+TGG | - | chr6_1:13325435-13325454 | None:intergenic | 55.0% | |
| ! | GGCCAATCCAAATTGGCTCC+TGG | + | chr6_1:13325430-13325449 | Msa0876010:intron | 55.0% |
| CCCCAGGAGCCAATTTGGAT+TGG | - | chr6_1:13325435-13325454 | None:intergenic | 55.0% | |
| GCTTCAAGGGCAATCTGGAG+TGG | - | chr6_1:13327780-13327799 | None:intergenic | 55.0% | |
| TGACTCCTGTGCGGCTTCAA+GGG | - | chr6_1:13327793-13327812 | None:intergenic | 55.0% | |
| TCATGGTCACGGGCATACAG+AGG | + | chr6_1:13327839-13327858 | Msa0876010:intron | 55.0% | |
| TGCTCCCTTTGCGACCTCAA+GGG | - | chr6_1:13327994-13328013 | None:intergenic | 55.0% | |
| CAATAGCATTGTGGCTCCGG+AGG | + | chr6_1:13328250-13328269 | Msa0876010:CDS | 55.0% | |
| ACCCTTTCGGCAAGGCTTCT+AGG | - | chr6_1:13330092-13330111 | None:intergenic | 55.0% | |
| !! | CGGCGCGATTTTGATGGGTC+AGG | - | chr6_1:13324984-13325003 | None:intergenic | 60.0% |
| !! | AGGCGCGGCGCGATTTTGAT+GGG | - | chr6_1:13324989-13325008 | None:intergenic | 60.0% |
| ! | AAGGCGCGGCGCGATTTTGA+TGG | - | chr6_1:13324990-13325009 | None:intergenic | 60.0% |
| TCGCGCCGCGCCTTGTATAA+TGG | + | chr6_1:13324996-13325015 | Msa0876010:CDS | 60.0% | |
| GGGATTAAGGGTTCGGGGGT+TGG | - | chr6_1:13325273-13325292 | None:intergenic | 60.0% | |
| TCAGGCCCCAGGAGCCAATT+TGG | - | chr6_1:13325440-13325459 | None:intergenic | 60.0% | |
| TCAGGCCCCAGGAGCCAATT+TGG | - | chr6_1:13325440-13325459 | None:intergenic | 60.0% | |
| GTGCGGCTTCAAGGGCAATC+TGG | - | chr6_1:13327785-13327804 | None:intergenic | 60.0% | |
| GATTGCCCTTGAAGCCGCAC+AGG | + | chr6_1:13327785-13327804 | Msa0876010:intron | 60.0% | |
| CTGACTCCTGTGCGGCTTCA+AGG | - | chr6_1:13327794-13327813 | None:intergenic | 60.0% | |
| GCCGCACAGGAGTCAGCATA+AGG | + | chr6_1:13327798-13327817 | Msa0876010:intron | 60.0% | |
| CTGCTCCCTTTGCGACCTCA+AGG | - | chr6_1:13327995-13328014 | None:intergenic | 60.0% | |
| AGGTCGCAAAGGGAGCAGCA+AGG | + | chr6_1:13327997-13328016 | Msa0876010:CDS | 60.0% | |
| GCAAAGGGAGCAGCAAGGCT+CGG | + | chr6_1:13328002-13328021 | Msa0876010:CDS | 60.0% | |
| ! | TGGGCGGGGGCCCTGAGAGC+GGG | - | chr6_1:13328422-13328441 | None:intergenic | 80.0% |
| ! | GTGGGCGGGGGCCCTGAGAG+CGG | - | chr6_1:13328423-13328442 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 13324900 | 13330507 | 13324900 | ID=Msa0876010;Name=Msa0876010 |
| chr6_1 | mRNA | 13324900 | 13330507 | 13324900 | ID=Msa0876010-mRNA-1;Parent=Msa0876010;Name=Msa0876010-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.28|1|1|7|0|357 |
| chr6_1 | exon | 13324900 | 13325045 | 13324900 | ID=Msa0876010-mRNA-1:exon:3913;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13326943 | 13327036 | 13326943 | ID=Msa0876010-mRNA-1:exon:3914;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13327116 | 13327164 | 13327116 | ID=Msa0876010-mRNA-1:exon:3915;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13327859 | 13328289 | 13327859 | ID=Msa0876010-mRNA-1:exon:3916;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13329939 | 13330175 | 13329939 | ID=Msa0876010-mRNA-1:exon:3917;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13330279 | 13330347 | 13330279 | ID=Msa0876010-mRNA-1:exon:3918;Parent=Msa0876010-mRNA-1 |
| chr6_1 | exon | 13330460 | 13330507 | 13330460 | ID=Msa0876010-mRNA-1:exon:3919;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13324900 | 13325045 | 13324900 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13326943 | 13327036 | 13326943 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13327116 | 13327164 | 13327116 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13327859 | 13328289 | 13327859 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13329939 | 13330175 | 13329939 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13330279 | 13330347 | 13330279 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| chr6_1 | CDS | 13330460 | 13330507 | 13330460 | ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
