AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876010 MtrunA17_Chr7g0258181 94.017 117 7 0 241 357 203 319 6.72e-74 231
Msa0876010 MtrunA17_Chr1g0174271 70.270 111 33 0 243 353 260 370 9.29e-50 171
Msa0876010 MtrunA17_Chr4g0032951 62.617 107 40 0 251 357 325 431 2.39e-41 150
Msa0876010 MtrunA17_Chr2g0329041 66.019 103 34 1 251 353 302 403 3.91e-39 143
Msa0876010 MtrunA17_Chr3g0087771 51.969 127 54 1 227 353 275 394 3.12e-37 138
Msa0876010 MtrunA17_Chr8g0351881 39.485 233 134 4 127 353 157 388 2.38e-32 124
Msa0876010 MtrunA17_Chr4g0014771 62.069 87 31 1 267 353 106 190 1.86e-30 115
Msa0876010 MtrunA17_Chr1g0213791 51.402 107 49 2 248 353 233 337 2.61e-26 107
Msa0876010 MtrunA17_Chr1g0190731 48.000 75 38 1 274 348 186 259 1.09e-13 71.2
Msa0876010 MtrunA17_Chr4g0074161 50.000 68 33 1 281 348 206 272 1.90e-13 70.9
Msa0876010 MtrunA17_Chr1g0152131 49.275 69 35 0 281 349 260 328 3.40e-13 70.5
Msa0876010 MtrunA17_Chr3g0131771 49.254 67 34 0 281 347 147 213 9.03e-13 68.6
Msa0876010 MtrunA17_Chr5g0421111 45.946 74 40 0 281 354 365 438 1.30e-12 68.9
Msa0876010 MtrunA17_Chr3g0144641 47.826 69 36 0 281 349 191 259 2.20e-12 67.8
Msa0876010 MtrunA17_Chr7g0234761 44.595 74 41 0 281 354 317 390 3.46e-12 67.4
Msa0876010 MtrunA17_Chr8g0365941 46.377 69 37 0 281 349 305 373 5.67e-12 66.6
Msa0876010 MtrunA17_Chr8g0339091 46.269 67 36 0 281 347 291 357 1.43e-11 65.5
Msa0876010 MtrunA17_Chr4g0035101 43.421 76 41 1 274 349 138 211 1.45e-11 65.1
Msa0876010 MtrunA17_Chr8g0385911 44.928 69 38 0 281 349 145 213 3.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876010 AT2G42280.1 64.348 115 38 1 246 357 241 355 1.71e-42 151
Msa0876010 AT2G42280.3 69.000 100 28 1 246 342 241 340 2.21e-37 138
Msa0876010 AT1G51140.1 63.107 103 33 2 251 353 279 376 2.16e-36 135
Msa0876010 AT2G43140.1 55.238 105 46 1 250 353 102 206 2.80e-32 120
Msa0876010 AT2G43140.2 55.238 105 46 1 250 353 199 303 1.19e-31 121
Msa0876010 AT1G05805.1 40.764 157 87 3 202 353 200 355 3.02e-29 116
Msa0876010 AT1G35460.1 59.756 82 33 0 273 354 173 254 1.07e-28 112
Msa0876010 AT4G09180.1 59.770 87 33 1 267 353 172 256 1.14e-27 109
Msa0876010 AT1G35460.2 74.468 47 12 0 273 319 173 219 1.50e-16 78.2
Msa0876010 AT2G24260.2 51.471 68 32 1 281 348 35 101 6.41e-14 71.2
Msa0876010 AT2G24260.1 51.471 68 32 1 281 348 138 204 9.74e-14 72.0
Msa0876010 AT4G30980.1 37.500 120 63 3 239 348 79 196 1.09e-13 71.2
Msa0876010 AT5G58010.1 50.000 68 33 1 281 348 99 165 1.42e-13 70.9
Msa0876010 AT4G30980.2 37.500 120 63 3 239 348 127 244 2.85e-13 70.5
Msa0876010 AT4G34530.1 46.377 69 37 0 281 349 172 240 1.32e-12 68.6
Msa0876010 AT1G10120.2 49.275 69 35 0 281 349 206 274 1.82e-12 68.2
Msa0876010 AT1G10120.1 49.275 69 35 0 281 349 206 274 1.82e-12 68.2
Msa0876010 AT5G50915.3 49.254 67 34 0 281 347 136 202 2.56e-12 67.0
Msa0876010 AT5G50915.4 49.254 67 34 0 281 347 136 202 2.56e-12 67.0
Msa0876010 AT5G50915.1 49.254 67 34 0 281 347 136 202 3.09e-12 67.0
Msa0876010 AT5G50915.2 49.254 67 34 0 281 347 136 202 3.09e-12 67.0
Msa0876010 AT1G68920.3 46.377 69 37 0 281 349 302 370 5.84e-12 67.0
Msa0876010 AT1G68920.1 46.377 69 37 0 281 349 303 371 6.23e-12 67.0
Msa0876010 AT1G68920.4 46.377 69 37 0 281 349 303 371 6.23e-12 67.0
Msa0876010 AT1G68920.2 46.377 69 37 0 281 349 303 371 6.23e-12 67.0
Msa0876010 AT3G07340.1 43.243 74 42 0 281 354 258 331 9.08e-12 66.6
Msa0876010 AT3G07340.2 43.243 74 42 0 281 354 258 331 9.45e-12 66.2
Msa0876010 AT1G26260.4 47.761 67 35 0 281 347 223 289 1.65e-11 65.5
Msa0876010 AT1G26260.1 47.761 67 35 0 281 347 223 289 1.65e-11 65.5
Msa0876010 AT1G26260.6 47.761 67 35 0 281 347 223 289 1.65e-11 65.5
Msa0876010 AT1G26260.2 47.761 67 35 0 281 347 223 289 1.65e-11 65.5
Msa0876010 AT1G26260.5 47.761 67 35 0 281 347 201 267 1.71e-11 65.5
Msa0876010 AT1G26260.3 47.761 67 35 0 281 347 172 238 2.08e-11 64.7
Msa0876010 AT1G25330.1 43.284 67 38 0 281 347 104 170 3.77e-11 62.8
Msa0876010 AT2G42280.2 58.929 56 20 1 246 298 241 296 8.96e-11 62.8

Find 81 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGCTATTGACATTTA+AGG 0.092398 6_1:-13328240 None:intergenic
TAAACAACTTGATTCATTTC+TGG 0.150885 6_1:-13330498 None:intergenic
AAGAACAAGGGTTACGATTT+TGG 0.168974 6_1:-13324925 None:intergenic
AACATCTCTGATGACTTTCT+TGG 0.289008 6_1:-13329990 None:intergenic
ACCCTTTCGGCAAGGCTTCT+AGG 0.305032 6_1:-13330089 None:intergenic
CTGGTTTCTGCATCTGCACT+TGG 0.320329 6_1:-13330479 None:intergenic
ATACTGCTTGGAACAGAATC+TGG 0.326173 6_1:-13330038 None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG 0.326997 6_1:-13330102 None:intergenic
TCGCGCCGCGCCTTGTATAA+TGG 0.331144 6_1:+13324996 Msa0876010:CDS
GGTGAATGAAACCACATCTT+TGG 0.335358 6_1:+13327887 Msa0876010:CDS
TTGCGACCTCAAGGGTAATA+TGG 0.344988 6_1:-13327983 None:intergenic
ATTCTGACCTTATCAATGTT+TGG 0.345820 6_1:-13330161 None:intergenic
CTCTTTGCTCTGATACTGCT+TGG 0.361585 6_1:-13330050 None:intergenic
AACATGGGATTGCTCTAGTT+TGG 0.367247 6_1:+13326961 Msa0876010:CDS
GTGAATGAAACCACATCTTT+GGG 0.373664 6_1:+13327888 Msa0876010:CDS
AATGTATTATTAATAATAAC+AGG 0.390146 6_1:-13328125 None:intergenic
TCCTAGAAGCCTTGCCGAAA+GGG 0.399735 6_1:+13330088 Msa0876010:CDS
GTGATAATGGTGGCAACATA+TGG 0.407449 6_1:+13327131 Msa0876010:CDS
AGAAACCGTAACATTGGAAA+TGG 0.415770 6_1:+13327920 Msa0876010:CDS
AATATTCTCTGAATGATTAA+CGG 0.422624 6_1:-13328057 None:intergenic
TGTTTCCATTTCCAATGTTA+CGG 0.435466 6_1:-13327925 None:intergenic
TGTCAATAGCATTGTGGCTC+CGG 0.447696 6_1:+13328247 Msa0876010:CDS
TGCCGCGATTTCCTCTTTAT+AGG 0.449812 6_1:+13325021 Msa0876010:CDS
GATTGTTCCAAACATTGATA+AGG 0.462084 6_1:+13330154 Msa0876010:CDS
TGCAGCAACATCTTCAGTCC+AGG 0.464926 6_1:+13328025 Msa0876010:CDS
GTGGTTTCATTCACCGGAGT+TGG 0.468531 6_1:-13327879 None:intergenic
TGCAGTATTTATAGAAGTCA+TGG 0.469703 6_1:+13324957 Msa0876010:CDS
CTGCTCCCTTTGCGACCTCA+AGG 0.470655 6_1:-13327992 None:intergenic
AAAGATGTGGTTTCATTCAC+CGG 0.472431 6_1:-13327885 None:intergenic
AAACCACGGAGAAGTGATAA+TGG 0.481236 6_1:+13327118 Msa0876010:CDS
ATTACACACTTCCTATAAAG+AGG 0.487042 6_1:-13325032 None:intergenic
CACATCAGAAATGTTAGACT+TGG 0.499859 6_1:+13330287 Msa0876010:CDS
ATCGACATCAACTCCAACTC+CGG 0.502855 6_1:+13327866 Msa0876010:CDS
TTTAAGGCTTTCTCGCAGAC+GGG 0.511219 6_1:-13328224 None:intergenic
GTTTAGATTGTTCGCAACAT+GGG 0.526284 6_1:+13326946 Msa0876010:CDS
GTTAGAAGAAAATCATGTAA+TGG 0.528030 6_1:+13327001 Msa0876010:CDS
ATCATATCTAACAATTTCAT+CGG 0.531133 6_1:-13328171 None:intergenic
ATTTAAGGCTTTCTCGCAGA+CGG 0.531356 6_1:-13328225 None:intergenic
GTCATCAGAGATGTTTGTTG+TGG 0.533598 6_1:+13329998 Msa0876010:CDS
TGTTTCCTTCCCCAAAGATG+TGG 0.533797 6_1:-13327898 None:intergenic
GGAGGGTGCTCTAATACATC+CGG 0.534401 6_1:+13328268 Msa0876010:CDS
TTCATCATCAATTCCGACAC+CGG 0.539964 6_1:+13328079 Msa0876010:CDS
ATCCTAGAAGCCTTGCCGAA+AGG 0.543719 6_1:+13330087 Msa0876010:CDS
CAATAGCATTGTGGCTCCGG+AGG 0.546607 6_1:+13328250 Msa0876010:CDS
GCAAAGGGAGCAGCAAGGCT+CGG 0.548575 6_1:+13328002 Msa0876010:CDS
GGAAACAGAAACCGTAACAT+TGG 0.549275 6_1:+13327914 Msa0876010:CDS
TCGCGGCACGCCATTATACA+AGG 0.549438 6_1:-13325006 None:intergenic
TTCTTCTTACCCTTTCGGCA+AGG 0.550067 6_1:-13330097 None:intergenic
TGTTTAGATTGTTCGCAACA+TGG 0.558944 6_1:+13326945 Msa0876010:CDS
ATTACCCTTGAGGTCGCAAA+GGG 0.559166 6_1:+13327987 Msa0876010:CDS
CCGAAAGGGTAAGAAGAACT+CGG 0.565752 6_1:+13330102 Msa0876010:CDS
CATGTAATGGAAAATGCTCA+AGG 0.571038 6_1:+13327014 Msa0876010:CDS
TTACTTTATGCAGACTGTGA+GGG 0.574387 6_1:+13330447 Msa0876010:intron
TGCTCCCTTTGCGACCTCAA+GGG 0.582048 6_1:-13327991 None:intergenic
GCAGCAACATCTTCAGTCCA+GGG 0.586147 6_1:+13328026 Msa0876010:CDS
GCAGTATTTATAGAAGTCAT+GGG 0.592279 6_1:+13324958 Msa0876010:CDS
ACCTCAAGGGTAATATGGAG+TGG 0.592342 6_1:-13327978 None:intergenic
TCCACTCCATATTACCCTTG+AGG 0.601850 6_1:+13327977 Msa0876010:CDS
TGAAACCACATCTTTGGGGA+AGG 0.608949 6_1:+13327893 Msa0876010:CDS
AATAGCATTGTGGCTCCGGA+GGG 0.612809 6_1:+13328251 Msa0876010:CDS
TTGTAATTCCAGAGAAACCA+CGG 0.617579 6_1:+13327104 Msa0876010:intron
TGCACTCAATCTGAAGAACA+AGG 0.620291 6_1:-13324938 None:intergenic
TATTACCCTTGAGGTCGCAA+AGG 0.621638 6_1:+13327986 Msa0876010:CDS
CTTAAATGTCAATAGCATTG+TGG 0.622794 6_1:+13328241 Msa0876010:CDS
GTATCAGTTACCACCGGTGT+CGG 0.623609 6_1:-13328092 None:intergenic
GCAACATATGGAGGTAACAA+TGG 0.625555 6_1:+13327143 Msa0876010:CDS
GGATGTATTAGAGCACCCTC+CGG 0.626630 6_1:-13328266 None:intergenic
ATTACTTTATGCAGACTGTG+AGG 0.629194 6_1:+13330446 Msa0876010:intron
ATCATCAATTCCGACACCGG+TGG 0.630872 6_1:+13328082 Msa0876010:CDS
ATGTAATGGAAAATGCTCAA+GGG 0.633542 6_1:+13327015 Msa0876010:CDS
ATAATGGTGGCAACATATGG+AGG 0.642354 6_1:+13327134 Msa0876010:CDS
GCACGCCATTATACAAGGCG+CGG 0.652086 6_1:-13325001 None:intergenic
CAGCAACATCTTCAGTCCAG+GGG 0.653307 6_1:+13328027 Msa0876010:CDS
TGAATGAAACCACATCTTTG+GGG 0.654790 6_1:+13327889 Msa0876010:CDS
TTCCTATAAAGAGGAAATCG+CGG 0.658751 6_1:-13325023 None:intergenic
GCACTCAATCTGAAGAACAA+GGG 0.668619 6_1:-13324937 None:intergenic
TGAGAAGTATCAGTTACCAC+CGG 0.673636 6_1:-13328098 None:intergenic
AGGTCGCAAAGGGAGCAGCA+AGG 0.677380 6_1:+13327997 Msa0876010:CDS
CCACCATTATCACTTCTCCG+TGG 0.682835 6_1:-13327121 None:intergenic
CCACGGAGAAGTGATAATGG+TGG 0.710292 6_1:+13327121 Msa0876010:CDS
AGCAACATCTTCAGTCCAGG+GGG 0.718415 6_1:+13328028 Msa0876010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAATCTTTGAAATAAA+AGG - chr6_1:13327612-13327631 None:intergenic 10.0%
!! AATGTATTATTAATAATAAC+AGG - chr6_1:13328128-13328147 None:intergenic 10.0%
!!! CAATTTTATACATATTTCAA+AGG - chr6_1:13325732-13325751 None:intergenic 15.0%
!! TGTATAAAATTGAAATGTAT+AGG + chr6_1:13325740-13325759 Msa0876010:intron 15.0%
!!! CAATTTTATACATATTTCAA+AGG - chr6_1:13325732-13325751 None:intergenic 15.0%
!! TGTATAAAATTGAAATGTAT+AGG + chr6_1:13325740-13325759 Msa0876010:intron 15.0%
!!! AAGTTTGTTATATTTGATTT+CGG + chr6_1:13327510-13327529 Msa0876010:intron 15.0%
!! CTCAATAAATATCATTTAAA+CGG - chr6_1:13328445-13328464 None:intergenic 15.0%
!!! TAGTTGAAAAAAGTATTTTT+TGG - chr6_1:13328740-13328759 None:intergenic 15.0%
!!! ATCATGATTATCTATTTTAA+TGG + chr6_1:13328985-13329004 Msa0876010:intron 15.0%
!! AATAGTAAAAGTCTATATTA+TGG + chr6_1:13329766-13329785 Msa0876010:intron 15.0%
!! GTTATACATTGTTTAATTAT+TGG + chr6_1:13330253-13330272 Msa0876010:intron 15.0%
!! AGATCTTAAAAAACAATTAA+AGG + chr6_1:13330326-13330345 Msa0876010:CDS 15.0%
!! ATTAAAATATATATTAGTGC+AGG - chr6_1:13330428-13330447 None:intergenic 15.0%
!!! TAATTCTTTTCAAAAGAAAG+TGG - chr6_1:13325322-13325341 None:intergenic 20.0%
!! ATGTATTTAATTCTGACATT+AGG + chr6_1:13325561-13325580 Msa0876010:intron 20.0%
!!! TTGTTTTACATTGTATATAC+TGG + chr6_1:13326062-13326081 Msa0876010:intron 20.0%
!!! TTGTTTTACATTGTATATAC+TGG + chr6_1:13326062-13326081 Msa0876010:intron 20.0%
!! AATATTCTCTGAATGATTAA+CGG - chr6_1:13328060-13328079 None:intergenic 20.0%
!! ATCATATCTAACAATTTCAT+CGG - chr6_1:13328174-13328193 None:intergenic 20.0%
!! ATAAATATCATTTAAACGGT+GGG - chr6_1:13328441-13328460 None:intergenic 20.0%
!! AATAAATATCATTTAAACGG+TGG - chr6_1:13328442-13328461 None:intergenic 20.0%
!!! AGTAATATAACTTGTTTGAT+TGG - chr6_1:13328680-13328699 None:intergenic 20.0%
!! ATATAATATTAGCGAAAAGA+CGG + chr6_1:13328706-13328725 Msa0876010:intron 20.0%
!! TTATAATTGAGATAACGAAA+AGG + chr6_1:13329099-13329118 Msa0876010:intron 20.0%
!! AATATCCTTCATTTGTAAAT+GGG - chr6_1:13329421-13329440 None:intergenic 20.0%
!! AAATATCCTTCATTTGTAAA+TGG - chr6_1:13329422-13329441 None:intergenic 20.0%
!!! AGTAATATAACTTGTTTGAT+TGG - chr6_1:13328680-13328699 None:intergenic 20.0%
!! TCATGCAATTTATACTGTTT+TGG - chr6_1:13325143-13325162 None:intergenic 25.0%
!! GTTCAAATACCACATTTTTA+GGG - chr6_1:13325293-13325312 None:intergenic 25.0%
! TTTCAAAAGAAAGTGGAAAA+AGG - chr6_1:13325315-13325334 None:intergenic 25.0%
! AAAAACTAAATCAAGCAACA+TGG - chr6_1:13325695-13325714 None:intergenic 25.0%
!!! ATAATGTAGCACAGTTTTTT+AGG + chr6_1:13325840-13325859 Msa0876010:intron 25.0%
!!! TAATGTAGCACAGTTTTTTA+GGG + chr6_1:13325841-13325860 Msa0876010:intron 25.0%
! AAAATGTGTTTAATCCAACT+TGG + chr6_1:13325891-13325910 Msa0876010:intron 25.0%
! ATGAAAAATAGCTCTTAATG+TGG + chr6_1:13325929-13325948 Msa0876010:intron 25.0%
! ATGTATTCAATTCTGACATT+AGG + chr6_1:13326402-13326421 Msa0876010:intron 25.0%
! AAAAACTAAATCAAGCAACA+TGG - chr6_1:13325695-13325714 None:intergenic 25.0%
! TGCTACATTATTGATAGATT+AGG - chr6_1:13325831-13325850 None:intergenic 25.0%
!!! ATAATGTAGCACAGTTTTTT+AGG + chr6_1:13325840-13325859 Msa0876010:intron 25.0%
!!! TAATGTAGCACAGTTTTTTA+GGG + chr6_1:13325841-13325860 Msa0876010:intron 25.0%
! AAAATGTGTTTAATCCAACT+TGG + chr6_1:13325891-13325910 Msa0876010:intron 25.0%
! ATGAAAAATAGCTCTTAATG+TGG + chr6_1:13325929-13325948 Msa0876010:intron 25.0%
!!! TGGTCATTTTAACTAATTCA+TGG + chr6_1:13326790-13326809 Msa0876010:intron 25.0%
!!! GGTCATTTTAACTAATTCAT+GGG + chr6_1:13326791-13326810 Msa0876010:intron 25.0%
! GTTAGAAGAAAATCATGTAA+TGG + chr6_1:13327001-13327020 Msa0876010:CDS 25.0%
!!! TGTTTTTTCACTAACATTGT+GGG - chr6_1:13327220-13327239 None:intergenic 25.0%
!!! TTGTTTTTTCACTAACATTG+TGG - chr6_1:13327221-13327240 None:intergenic 25.0%
! AGGAAAAAAAAATGTGCAAA+AGG + chr6_1:13328384-13328403 Msa0876010:intron 25.0%
! GTTGTCAATAATGAATAATG+AGG + chr6_1:13328467-13328486 Msa0876010:intron 25.0%
! TGTAAGAAAGTTCTATACAT+TGG + chr6_1:13328537-13328556 Msa0876010:intron 25.0%
! AAACCAAAGAAGGTTAATAT+GGG - chr6_1:13328568-13328587 None:intergenic 25.0%
! AAAACCAAAGAAGGTTAATA+TGG - chr6_1:13328569-13328588 None:intergenic 25.0%
!! GTAATATACCTTGTTTGATT+GGG - chr6_1:13328794-13328813 None:intergenic 25.0%
!! AGTAATATACCTTGTTTGAT+TGG - chr6_1:13328795-13328814 None:intergenic 25.0%
! TTTCGCTAGTATTATATAGA+GGG - chr6_1:13328818-13328837 None:intergenic 25.0%
!! TTTTCGCTAGTATTATATAG+AGG - chr6_1:13328819-13328838 None:intergenic 25.0%
! ATATAATACTAGCGAAAAGA+CGG + chr6_1:13328821-13328840 Msa0876010:intron 25.0%
! ACTATGGAAAAAGTTGTTTA+AGG + chr6_1:13329076-13329095 Msa0876010:intron 25.0%
! CAATACAAATAACACAGTAT+GGG - chr6_1:13329207-13329226 None:intergenic 25.0%
! TCAATACAAATAACACAGTA+TGG - chr6_1:13329208-13329227 None:intergenic 25.0%
! CAATACAATTAACAGAGTAT+GGG - chr6_1:13329263-13329282 None:intergenic 25.0%
! TCAATACAATTAACAGAGTA+TGG - chr6_1:13329264-13329283 None:intergenic 25.0%
! AAGTCAATATTAACCTTCTT+TGG + chr6_1:13329387-13329406 Msa0876010:intron 25.0%
!! CAATTTAAGTTAGTGTAGTT+AGG - chr6_1:13329481-13329500 None:intergenic 25.0%
!!! TATTGTACTTGCTTTTCAAT+TGG - chr6_1:13329543-13329562 None:intergenic 25.0%
!! TTTAAAACTGCAATTTAGAG+AGG + chr6_1:13329666-13329685 Msa0876010:intron 25.0%
! TAGTGTACCATTATTAACAA+TGG + chr6_1:13329696-13329715 Msa0876010:intron 25.0%
! CAAACATAATTGTCTCAAAA+GGG - chr6_1:13330223-13330242 None:intergenic 25.0%
! ACAAACATAATTGTCTCAAA+AGG - chr6_1:13330224-13330243 None:intergenic 25.0%
TGCAGTATTTATAGAAGTCA+TGG + chr6_1:13324957-13324976 Msa0876010:CDS 30.0%
GCAGTATTTATAGAAGTCAT+GGG + chr6_1:13324958-13324977 Msa0876010:CDS 30.0%
ATTACACACTTCCTATAAAG+AGG - chr6_1:13325035-13325054 None:intergenic 30.0%
! AAAATTTGAAGTCTGTTCGA+AGG - chr6_1:13325106-13325125 None:intergenic 30.0%
CCTGTCATTACGTAATATTA+GGG - chr6_1:13325193-13325212 None:intergenic 30.0%
TCCTGTCATTACGTAATATT+AGG - chr6_1:13325194-13325213 None:intergenic 30.0%
! ACAGAGTACTACGAATATTT+AGG + chr6_1:13325221-13325240 Msa0876010:intron 30.0%
! CAGAGTACTACGAATATTTA+GGG + chr6_1:13325222-13325241 Msa0876010:intron 30.0%
!! ATTTTTAGGGATTAAGGGTT+CGG - chr6_1:13325280-13325299 None:intergenic 30.0%
!! ACCACATTTTTAGGGATTAA+GGG - chr6_1:13325285-13325304 None:intergenic 30.0%
!! TACCACATTTTTAGGGATTA+AGG - chr6_1:13325286-13325305 None:intergenic 30.0%
! GGTTCAAATACCACATTTTT+AGG - chr6_1:13325294-13325313 None:intergenic 30.0%
!! CCAACTTTTGCTATAATTTC+AGG - chr6_1:13325458-13325477 None:intergenic 30.0%
CCTGAAATTATAGCAAAAGT+TGG + chr6_1:13325455-13325474 Msa0876010:intron 30.0%
!!! TGCTTGATTTAGTTTTTTCC+AGG + chr6_1:13325698-13325717 Msa0876010:intron 30.0%
!!! TTTAGTTTTTTCCAGGACTT+AGG + chr6_1:13325705-13325724 Msa0876010:intron 30.0%
TGGTCATCTTAACTAATTCA+TGG + chr6_1:13325949-13325968 Msa0876010:intron 30.0%
GGTCATCTTAACTAATTCAT+GGG + chr6_1:13325950-13325969 Msa0876010:intron 30.0%
!! CCAACTTTTGCTATAATTTC+AGG - chr6_1:13325458-13325477 None:intergenic 30.0%
CCTGAAATTATAGCAAAAGT+TGG + chr6_1:13325455-13325474 Msa0876010:intron 30.0%
!!! TGCTTGATTTAGTTTTTTCC+AGG + chr6_1:13325698-13325717 Msa0876010:intron 30.0%
!!! TTTAGTTTTTTCCAGGACTT+AGG + chr6_1:13325705-13325724 Msa0876010:intron 30.0%
! ATGTAATGGAAAATGCTCAA+GGG + chr6_1:13327015-13327034 Msa0876010:CDS 30.0%
! TTGAATAGTGTTTTGTCTAG+TGG + chr6_1:13327574-13327593 Msa0876010:intron 30.0%
TATTTCCATCTCCAATGATA+CGG - chr6_1:13327721-13327740 None:intergenic 30.0%
ATTGGAGATGGAAATAGAAA+CGG + chr6_1:13327725-13327744 Msa0876010:intron 30.0%
TGTTTCCATTTCCAATGTTA+CGG - chr6_1:13327928-13327947 None:intergenic 30.0%
CACAATGCTATTGACATTTA+AGG - chr6_1:13328243-13328262 None:intergenic 30.0%
CTTAAATGTCAATAGCATTG+TGG + chr6_1:13328241-13328260 Msa0876010:CDS 30.0%
! TTTAAGTCTTTTTGTAGCAC+CGG - chr6_1:13328290-13328309 None:intergenic 30.0%
! CAGTTTAAGTTAGTGTAGTT+AGG - chr6_1:13328656-13328675 None:intergenic 30.0%
! CAGTTTAAGTTAGTGTAGTT+AGG - chr6_1:13328656-13328675 None:intergenic 30.0%
TATAATACTAGCGAAAAGAC+GGG + chr6_1:13328822-13328841 Msa0876010:intron 30.0%
ACCAACTACAATCTTTACTA+TGG + chr6_1:13329060-13329079 Msa0876010:intron 30.0%
TCCATAGTAAAGATTGTAGT+TGG - chr6_1:13329064-13329083 None:intergenic 30.0%
! ATAGCATGTTTTGTCTCTTT+TGG - chr6_1:13329323-13329342 None:intergenic 30.0%
TCTAACCCATTTACAAATGA+AGG + chr6_1:13329413-13329432 Msa0876010:intron 30.0%
TCAATTGGATCTGAATTGAA+GGG - chr6_1:13329528-13329547 None:intergenic 30.0%
TTCAATTGGATCTGAATTGA+AGG - chr6_1:13329529-13329548 None:intergenic 30.0%
! TTTTGCATACACTAGTAGTA+GGG - chr6_1:13329606-13329625 None:intergenic 30.0%
! TTTTTGCATACACTAGTAGT+AGG - chr6_1:13329607-13329626 None:intergenic 30.0%
GTACCATTATTAACAATGGT+TGG + chr6_1:13329700-13329719 Msa0876010:intron 30.0%
GATCCAACCATTGTTAATAA+TGG - chr6_1:13329706-13329725 None:intergenic 30.0%
TCTATTAGATCTTGTGATAG+AGG + chr6_1:13329733-13329752 Msa0876010:intron 30.0%
GGAAAAATAGGAATAGATAG+TGG - chr6_1:13329913-13329932 None:intergenic 30.0%
! TACATTCTGAGAGGAAAAAT+AGG - chr6_1:13329925-13329944 None:intergenic 30.0%
! TATTTTTCCTCTCAGAATGT+AGG + chr6_1:13329924-13329943 Msa0876010:intron 30.0%
GATTGTTCCAAACATTGATA+AGG + chr6_1:13330154-13330173 Msa0876010:CDS 30.0%
ATTCTGACCTTATCAATGTT+TGG - chr6_1:13330164-13330183 None:intergenic 30.0%
TAACTGCATGGAAATGAATA+GGG - chr6_1:13330388-13330407 None:intergenic 30.0%
TTAACTGCATGGAAATGAAT+AGG - chr6_1:13330389-13330408 None:intergenic 30.0%
! AAGAACAAGGGTTACGATTT+TGG - chr6_1:13324928-13324947 None:intergenic 35.0%
TTCCTATAAAGAGGAAATCG+CGG - chr6_1:13325026-13325045 None:intergenic 35.0%
CCCTAATATTACGTAATGAC+AGG + chr6_1:13325190-13325209 Msa0876010:intron 35.0%
!! TTTTTAGGGATTAAGGGTTC+GGG - chr6_1:13325279-13325298 None:intergenic 35.0%
ACCCTTAATCCCTAAAAATG+TGG + chr6_1:13325281-13325300 Msa0876010:intron 35.0%
! GTTCGACTAAGCTTTATATG+AGG + chr6_1:13325594-13325613 Msa0876010:intron 35.0%
TCAATTAATACAGACCCCAA+CGG + chr6_1:13325629-13325648 Msa0876010:intron 35.0%
ATGTGTTTAATCCAACTTGG+TGG + chr6_1:13325894-13325913 Msa0876010:intron 35.0%
ACTGGATCATATAAAACTGC+AGG + chr6_1:13326080-13326099 Msa0876010:intron 35.0%
TGTTTAGATTGTTCGCAACA+TGG + chr6_1:13326104-13326123 Msa0876010:intron 35.0%
GTTTAGATTGTTCGCAACAT+GGG + chr6_1:13326105-13326124 Msa0876010:intron 35.0%
! GTTCGACTAAGCTTTATATG+AGG + chr6_1:13325594-13325613 Msa0876010:intron 35.0%
TCAATTAATACAGACCCCAA+CGG + chr6_1:13325629-13325648 Msa0876010:intron 35.0%
ATGTGTTTAATCCAACTTGG+TGG + chr6_1:13325894-13325913 Msa0876010:intron 35.0%
ACTGGATCATATAAAACTGC+AGG + chr6_1:13326080-13326099 Msa0876010:intron 35.0%
TGTTTAGATTGTTCGCAACA+TGG + chr6_1:13326104-13326123 Msa0876010:intron 35.0%
GTTTAGATTGTTCGCAACAT+GGG + chr6_1:13326105-13326124 Msa0876010:intron 35.0%
! CATGTAATGGAAAATGCTCA+AGG + chr6_1:13327014-13327033 Msa0876010:CDS 35.0%
! CGTGTGATATTTGCGATTTT+TGG - chr6_1:13327047-13327066 None:intergenic 35.0%
ATGAGGAAACGTAGCTAATT+TGG + chr6_1:13327068-13327087 Msa0876010:intron 35.0%
TTGTAATTCCAGAGAAACCA+CGG + chr6_1:13327104-13327123 Msa0876010:intron 35.0%
! TTTTTCACTAACATTGTGGG+TGG - chr6_1:13327217-13327236 None:intergenic 35.0%
TCATATAGCATTGCTCTTCT+TGG + chr6_1:13327383-13327402 Msa0876010:intron 35.0%
AAAGATGTGGTTTCATTCAC+CGG - chr6_1:13327888-13327907 None:intergenic 35.0%
GTGAATGAAACCACATCTTT+GGG + chr6_1:13327888-13327907 Msa0876010:CDS 35.0%
TGAATGAAACCACATCTTTG+GGG + chr6_1:13327889-13327908 Msa0876010:CDS 35.0%
AGAAACCGTAACATTGGAAA+TGG + chr6_1:13327920-13327939 Msa0876010:CDS 35.0%
! TATGCAAGATTAGTTAGCGA+AGG + chr6_1:13328313-13328332 Msa0876010:intron 35.0%
!! TAATGAGGTACCTTTTACTG+CGG + chr6_1:13328346-13328365 Msa0876010:intron 35.0%
! TTTGAAGTTACCGCAGTAAA+AGG - chr6_1:13328359-13328378 None:intergenic 35.0%
AATATCATTTAAACGGTGGG+CGG - chr6_1:13328438-13328457 None:intergenic 35.0%
TAGCCCATATTAACCTTCTT+TGG + chr6_1:13328562-13328581 Msa0876010:intron 35.0%
ATGTGCAAGAAAACCAAAGA+AGG - chr6_1:13328578-13328597 None:intergenic 35.0%
TCTTGCACATTGACAAATGA+AGG + chr6_1:13328588-13328607 Msa0876010:intron 35.0%
TTAAACTGCCCAATCAAACA+AGG + chr6_1:13328783-13328802 Msa0876010:intron 35.0%
ACTTAGCGCAATAAAAAGAG+TGG - chr6_1:13328867-13328886 None:intergenic 35.0%
! ATGTTTTGTCTCTTTTGGAC+TGG - chr6_1:13329318-13329337 None:intergenic 35.0%
!! ATGGGTTAGAAAACCAAAGA+AGG - chr6_1:13329403-13329422 None:intergenic 35.0%
TAGTTAGGATTGATCGTAGT+TGG - chr6_1:13329466-13329485 None:intergenic 35.0%
TCGATTCAATTCTTAGCACA+TGG + chr6_1:13329639-13329658 Msa0876010:intron 35.0%
TTAGGGTTACCAATAGCTTT+GGG - chr6_1:13329832-13329851 None:intergenic 35.0%
ATTAGGGTTACCAATAGCTT+TGG - chr6_1:13329833-13329852 None:intergenic 35.0%
CAAAGTGGAGGGAAAAATTA+GGG - chr6_1:13329849-13329868 None:intergenic 35.0%
GTTAATGTTTGCAAAGTGGA+GGG - chr6_1:13329860-13329879 None:intergenic 35.0%
AGTTAATGTTTGCAAAGTGG+AGG - chr6_1:13329861-13329880 None:intergenic 35.0%
AGGAGTTAATGTTTGCAAAG+TGG - chr6_1:13329864-13329883 None:intergenic 35.0%
AACATCTCTGATGACTTTCT+TGG - chr6_1:13329993-13330012 None:intergenic 35.0%
CACATCAGAAATGTTAGACT+TGG + chr6_1:13330287-13330306 Msa0876010:CDS 35.0%
AACTGCATGGAAATGAATAG+GGG - chr6_1:13330387-13330406 None:intergenic 35.0%
ACTAATCGTGATTAACTGCA+TGG - chr6_1:13330400-13330419 None:intergenic 35.0%
ATTACTTTATGCAGACTGTG+AGG + chr6_1:13330446-13330465 Msa0876010:intron 35.0%
TTACTTTATGCAGACTGTGA+GGG + chr6_1:13330447-13330466 Msa0876010:intron 35.0%
GCACTCAATCTGAAGAACAA+GGG - chr6_1:13324940-13324959 None:intergenic 40.0%
TGCACTCAATCTGAAGAACA+AGG - chr6_1:13324941-13324960 None:intergenic 40.0%
TTGCTTCAAAAATCGCAGCA+CGG + chr6_1:13325056-13325075 Msa0876010:intron 40.0%
!! TTTTAGGGATTAAGGGTTCG+GGG - chr6_1:13325278-13325297 None:intergenic 40.0%
TGAGTCAAACGCCAATCAAA+TGG + chr6_1:13325368-13325387 Msa0876010:intron 40.0%
!!! GTCATTGTCGCGTCATTTTT+CGG - chr6_1:13325405-13325424 None:intergenic 40.0%
ACTATCAGGCCAATCCAAAT+TGG + chr6_1:13325423-13325442 Msa0876010:intron 40.0%
ATCAAGCAACATGGAAGAGT+GGG - chr6_1:13325686-13325705 None:intergenic 40.0%
AATCAAGCAACATGGAAGAG+TGG - chr6_1:13325687-13325706 None:intergenic 40.0%
ATTTCAAAGGACCTAAGTCC+TGG - chr6_1:13325719-13325738 None:intergenic 40.0%
TTCTTGTTAGTCCACCAAGT+TGG - chr6_1:13325908-13325927 None:intergenic 40.0%
AACATGGGATTGCTCTAGTT+TGG + chr6_1:13326120-13326139 Msa0876010:intron 40.0%
TGAGTCAAACGCCAATCAAA+TGG + chr6_1:13325368-13325387 Msa0876010:intron 40.0%
!!! GTCATTTTTTGGACGGTCAA+AGG - chr6_1:13326235-13326254 None:intergenic 40.0%
!!! TTGTCGCGTCATTTTTTGGA+CGG - chr6_1:13326242-13326261 None:intergenic 40.0%
!!! GTCATTGTCGCGTCATTTTT+TGG - chr6_1:13325405-13325424 None:intergenic 40.0%
ATCAAGCAACATGGAAGAGT+GGG - chr6_1:13325686-13325705 None:intergenic 40.0%
AATCAAGCAACATGGAAGAG+TGG - chr6_1:13325687-13325706 None:intergenic 40.0%
ATTTCAAAGGACCTAAGTCC+TGG - chr6_1:13325719-13325738 None:intergenic 40.0%
TTCTTGTTAGTCCACCAAGT+TGG - chr6_1:13325908-13325927 None:intergenic 40.0%
AACATGGGATTGCTCTAGTT+TGG + chr6_1:13326120-13326139 Msa0876010:intron 40.0%
TCGCAAATATCACACGAATG+AGG + chr6_1:13327051-13327070 Msa0876010:intron 40.0%
AAACCACGGAGAAGTGATAA+TGG + chr6_1:13327118-13327137 Msa0876010:CDS 40.0%
!! GTGATAATGGTGGCAACATA+TGG + chr6_1:13327131-13327150 Msa0876010:CDS 40.0%
ATAATGGTGGCAACATATGG+AGG + chr6_1:13327134-13327153 Msa0876010:CDS 40.0%
GCAACATATGGAGGTAACAA+TGG + chr6_1:13327143-13327162 Msa0876010:CDS 40.0%
AACGAACGTGTTTCGTTGTT+GGG - chr6_1:13327317-13327336 None:intergenic 40.0%
AAACGAACGTGTTTCGTTGT+TGG - chr6_1:13327318-13327337 None:intergenic 40.0%
TGCTCTTCTTGGCTTATCAT+AGG + chr6_1:13327394-13327413 Msa0876010:intron 40.0%
TTTCCAATGTCGTGTTGTCA+AGG - chr6_1:13327659-13327678 None:intergenic 40.0%
TGACAACACGACATTGGAAA+AGG + chr6_1:13327659-13327678 Msa0876010:intron 40.0%
TGTAGCGTTATCAAGAGTTG+CGG - chr6_1:13327694-13327713 None:intergenic 40.0%
AGAATCCGTATCATTGGAGA+TGG + chr6_1:13327713-13327732 Msa0876010:intron 40.0%
GCAGCATGAATCTATGAACA+TGG + chr6_1:13327749-13327768 Msa0876010:intron 40.0%
GGTGAATGAAACCACATCTT+TGG + chr6_1:13327887-13327906 Msa0876010:CDS 40.0%
GGAAACAGAAACCGTAACAT+TGG + chr6_1:13327914-13327933 Msa0876010:CDS 40.0%
TTCATCATCAATTCCGACAC+CGG + chr6_1:13328079-13328098 Msa0876010:CDS 40.0%
!! TGAGAAGTATCAGTTACCAC+CGG - chr6_1:13328101-13328120 None:intergenic 40.0%
! ATTTAAGGCTTTCTCGCAGA+CGG - chr6_1:13328228-13328247 None:intergenic 40.0%
GAAGGCTGCTGTTAATAATG+AGG + chr6_1:13328331-13328350 Msa0876010:intron 40.0%
ATATCATTTAAACGGTGGGC+GGG - chr6_1:13328437-13328456 None:intergenic 40.0%
TCTTACTTCCCCAAAGCTAT+TGG + chr6_1:13329820-13329839 Msa0876010:intron 40.0%
! TAGGGTTACCAATAGCTTTG+GGG - chr6_1:13329831-13329850 None:intergenic 40.0%
GCAAAGTGGAGGGAAAAATT+AGG - chr6_1:13329850-13329869 None:intergenic 40.0%
! GTCATCAGAGATGTTTGTTG+TGG + chr6_1:13329998-13330017 Msa0876010:CDS 40.0%
ATACTGCTTGGAACAGAATC+TGG - chr6_1:13330041-13330060 None:intergenic 40.0%
TGCCGCGATTTCCTCTTTAT+AGG + chr6_1:13325021-13325040 Msa0876010:CDS 45.0%
TTTAGGGATTAAGGGTTCGG+GGG - chr6_1:13325277-13325296 None:intergenic 45.0%
! ACGGTCTAAGGCCATTTGAT+TGG - chr6_1:13325382-13325401 None:intergenic 45.0%
!!! GTCATTTTTCGGACGGTCTA+AGG - chr6_1:13325394-13325413 None:intergenic 45.0%
!!! TTGTCGCGTCATTTTTCGGA+CGG - chr6_1:13325401-13325420 None:intergenic 45.0%
ATGACGCGACAATGACTATC+AGG + chr6_1:13325409-13325428 Msa0876010:intron 45.0%
TTGCTATAATTTCAGGCCCC+AGG - chr6_1:13325451-13325470 None:intergenic 45.0%
TCTGACATTAGGCTCATGAG+AGG + chr6_1:13325572-13325591 Msa0876010:intron 45.0%
ACTTCATGACGAAGACCGTT+GGG - chr6_1:13325647-13325666 None:intergenic 45.0%
AACTTCATGACGAAGACCGT+TGG - chr6_1:13325648-13325667 None:intergenic 45.0%
GCGTAGACAAGCAAATACAG+TGG - chr6_1:13325976-13325995 None:intergenic 45.0%
CGCTTGTAACTCTTCTTGCT+AGG + chr6_1:13326143-13326162 Msa0876010:intron 45.0%
ACGGTCAAAGGCCATTTGAT+TGG - chr6_1:13326223-13326242 None:intergenic 45.0%
ACCATCAGGCCAATCCAAAT+TGG + chr6_1:13326264-13326283 Msa0876010:intron 45.0%
TTGCTATAATTTCAGGCCCC+AGG - chr6_1:13325451-13325470 None:intergenic 45.0%
TCTGACATTAGGCTCATGAG+AGG + chr6_1:13325572-13325591 Msa0876010:intron 45.0%
ACTTCATGACGAAGACCGTT+GGG - chr6_1:13325647-13325666 None:intergenic 45.0%
AACTTCATGACGAAGACCGT+TGG - chr6_1:13325648-13325667 None:intergenic 45.0%
GCGTAGACAAGCAAATACAG+TGG - chr6_1:13325976-13325995 None:intergenic 45.0%
ATGCTTGCAACCTGTAGAAG+TGG + chr6_1:13327174-13327193 Msa0876010:intron 45.0%
TGCAACCTGTAGAAGTGGTA+AGG + chr6_1:13327179-13327198 Msa0876010:intron 45.0%
AACCTGTAGAAGTGGTAAGG+TGG + chr6_1:13327182-13327201 Msa0876010:intron 45.0%
TGTCCTTGACAACACGACAT+TGG + chr6_1:13327653-13327672 Msa0876010:intron 45.0%
CGCTACAGAATCCGTATCAT+TGG + chr6_1:13327707-13327726 Msa0876010:intron 45.0%
GCATCAACGTCTCTTGATCA+TGG + chr6_1:13327822-13327841 Msa0876010:intron 45.0%
ACGTCTCTTGATCATGGTCA+CGG + chr6_1:13327828-13327847 Msa0876010:intron 45.0%
ATCGACATCAACTCCAACTC+CGG + chr6_1:13327866-13327885 Msa0876010:CDS 45.0%
! TGAAACCACATCTTTGGGGA+AGG + chr6_1:13327893-13327912 Msa0876010:CDS 45.0%
TGTTTCCTTCCCCAAAGATG+TGG - chr6_1:13327901-13327920 None:intergenic 45.0%
TCCACTCCATATTACCCTTG+AGG + chr6_1:13327977-13327996 Msa0876010:CDS 45.0%
ACCTCAAGGGTAATATGGAG+TGG - chr6_1:13327981-13328000 None:intergenic 45.0%
TTGCGACCTCAAGGGTAATA+TGG - chr6_1:13327986-13328005 None:intergenic 45.0%
TATTACCCTTGAGGTCGCAA+AGG + chr6_1:13327986-13328005 Msa0876010:CDS 45.0%
ATTACCCTTGAGGTCGCAAA+GGG + chr6_1:13327987-13328006 Msa0876010:CDS 45.0%
! TTTAAGGCTTTCTCGCAGAC+GGG - chr6_1:13328227-13328246 None:intergenic 45.0%
TGTCAATAGCATTGTGGCTC+CGG + chr6_1:13328247-13328266 Msa0876010:CDS 45.0%
TGCGGTAACTTCAAAGTCAC+AGG + chr6_1:13328364-13328383 Msa0876010:intron 45.0%
TATCATTTAAACGGTGGGCG+GGG - chr6_1:13328436-13328455 None:intergenic 45.0%
CTCTTTGCTCTGATACTGCT+TGG - chr6_1:13330053-13330072 None:intergenic 45.0%
TTCTTCTTACCCTTTCGGCA+AGG - chr6_1:13330100-13330119 None:intergenic 45.0%
CCGAGTTCTTCTTACCCTTT+CGG - chr6_1:13330105-13330124 None:intergenic 45.0%
CCGAAAGGGTAAGAAGAACT+CGG + chr6_1:13330102-13330121 Msa0876010:CDS 45.0%
!!! ATATTTTTTTATTATATAGT+TGG - chr6_1:13329013-13329032 None:intergenic 5.0%
ATCGCAGCACGGCTTGAAAT+TGG + chr6_1:13325067-13325086 Msa0876010:intron 50.0%
!! GGGTTGGTTATACTGAGGGT+AGG - chr6_1:13325257-13325276 None:intergenic 50.0%
!! TCGGGGGTTGGTTATACTGA+GGG - chr6_1:13325261-13325280 None:intergenic 50.0%
!! TTCGGGGGTTGGTTATACTG+AGG - chr6_1:13325262-13325281 None:intergenic 50.0%
! GCCAATCCAAATTGGCTCCT+GGG + chr6_1:13325431-13325450 Msa0876010:intron 50.0%
! CCAATCCAAATTGGCTCCTG+GGG + chr6_1:13325432-13325451 Msa0876010:intron 50.0%
CTTCATGACGAAGACCGTTG+GGG - chr6_1:13325646-13325665 None:intergenic 50.0%
ATGACGCGACAATGACCATC+AGG + chr6_1:13326250-13326269 Msa0876010:intron 50.0%
!! GCCAATTTGGATTGGCCTGA+TGG - chr6_1:13325427-13325446 None:intergenic 50.0%
! GCCAATCCAAATTGGCTCCT+GGG + chr6_1:13325431-13325450 Msa0876010:intron 50.0%
! CCAATCCAAATTGGCTCCTG+GGG + chr6_1:13325432-13325451 Msa0876010:intron 50.0%
CTTCATGACGAAGACCGTTG+GGG - chr6_1:13325646-13325665 None:intergenic 50.0%
TCACTTCTCCGTGGTTTCTC+TGG - chr6_1:13327115-13327134 None:intergenic 50.0%
CCACCATTATCACTTCTCCG+TGG - chr6_1:13327124-13327143 None:intergenic 50.0%
!! CCACGGAGAAGTGATAATGG+TGG + chr6_1:13327121-13327140 Msa0876010:CDS 50.0%
CACCACCTTACCACTTCTAC+AGG - chr6_1:13327187-13327206 None:intergenic 50.0%
CTGTAGAAGTGGTAAGGTGG+TGG + chr6_1:13327185-13327204 Msa0876010:intron 50.0%
! TTTCGTTGTTGGGAGGCATG+TGG - chr6_1:13327307-13327326 None:intergenic 50.0%
GAACGTGTTTCGTTGTTGGG+AGG - chr6_1:13327314-13327333 None:intergenic 50.0%
!! ACCTTATGCTGACTCCTGTG+CGG - chr6_1:13327802-13327821 None:intergenic 50.0%
CGTCTCTTGATCATGGTCAC+GGG + chr6_1:13327829-13327848 Msa0876010:intron 50.0%
GTGGTTTCATTCACCGGAGT+TGG - chr6_1:13327882-13327901 None:intergenic 50.0%
TGCAGCAACATCTTCAGTCC+AGG + chr6_1:13328025-13328044 Msa0876010:CDS 50.0%
GCAGCAACATCTTCAGTCCA+GGG + chr6_1:13328026-13328045 Msa0876010:CDS 50.0%
CAGCAACATCTTCAGTCCAG+GGG + chr6_1:13328027-13328046 Msa0876010:CDS 50.0%
AGCAACATCTTCAGTCCAGG+GGG + chr6_1:13328028-13328047 Msa0876010:CDS 50.0%
GATTAACGGAAACATCCCCC+TGG - chr6_1:13328046-13328065 None:intergenic 50.0%
ATCATCAATTCCGACACCGG+TGG + chr6_1:13328082-13328101 Msa0876010:CDS 50.0%
GTATCAGTTACCACCGGTGT+CGG - chr6_1:13328095-13328114 None:intergenic 50.0%
AATAGCATTGTGGCTCCGGA+GGG + chr6_1:13328251-13328270 Msa0876010:CDS 50.0%
! GGATGTATTAGAGCACCCTC+CGG - chr6_1:13328269-13328288 None:intergenic 50.0%
!! GGAGGGTGCTCTAATACATC+CGG + chr6_1:13328268-13328287 Msa0876010:CDS 50.0%
TGCATACAAAACCCGCTCTC+AGG + chr6_1:13328408-13328427 Msa0876010:intron 50.0%
GCATACAAAACCCGCTCTCA+GGG + chr6_1:13328409-13328428 Msa0876010:intron 50.0%
ATCATTTAAACGGTGGGCGG+GGG - chr6_1:13328435-13328454 None:intergenic 50.0%
TCGTACGCCTACATTCTGAG+AGG - chr6_1:13329934-13329953 None:intergenic 50.0%
ATCCTAGAAGCCTTGCCGAA+AGG + chr6_1:13330087-13330106 Msa0876010:CDS 50.0%
TCCTAGAAGCCTTGCCGAAA+GGG + chr6_1:13330088-13330107 Msa0876010:CDS 50.0%
CTGGTTTCTGCATCTGCACT+TGG - chr6_1:13330482-13330501 None:intergenic 50.0%
GCACGCCATTATACAAGGCG+CGG - chr6_1:13325004-13325023 None:intergenic 55.0%
TCGCGGCACGCCATTATACA+AGG - chr6_1:13325009-13325028 None:intergenic 55.0%
AGCACGGCTTGAAATTGGCG+TGG + chr6_1:13325072-13325091 Msa0876010:intron 55.0%
! GGCCAATCCAAATTGGCTCC+TGG + chr6_1:13325430-13325449 Msa0876010:intron 55.0%
CCCCAGGAGCCAATTTGGAT+TGG - chr6_1:13325435-13325454 None:intergenic 55.0%
! GGCCAATCCAAATTGGCTCC+TGG + chr6_1:13325430-13325449 Msa0876010:intron 55.0%
CCCCAGGAGCCAATTTGGAT+TGG - chr6_1:13325435-13325454 None:intergenic 55.0%
GCTTCAAGGGCAATCTGGAG+TGG - chr6_1:13327780-13327799 None:intergenic 55.0%
TGACTCCTGTGCGGCTTCAA+GGG - chr6_1:13327793-13327812 None:intergenic 55.0%
TCATGGTCACGGGCATACAG+AGG + chr6_1:13327839-13327858 Msa0876010:intron 55.0%
TGCTCCCTTTGCGACCTCAA+GGG - chr6_1:13327994-13328013 None:intergenic 55.0%
CAATAGCATTGTGGCTCCGG+AGG + chr6_1:13328250-13328269 Msa0876010:CDS 55.0%
ACCCTTTCGGCAAGGCTTCT+AGG - chr6_1:13330092-13330111 None:intergenic 55.0%
!! CGGCGCGATTTTGATGGGTC+AGG - chr6_1:13324984-13325003 None:intergenic 60.0%
!! AGGCGCGGCGCGATTTTGAT+GGG - chr6_1:13324989-13325008 None:intergenic 60.0%
! AAGGCGCGGCGCGATTTTGA+TGG - chr6_1:13324990-13325009 None:intergenic 60.0%
TCGCGCCGCGCCTTGTATAA+TGG + chr6_1:13324996-13325015 Msa0876010:CDS 60.0%
GGGATTAAGGGTTCGGGGGT+TGG - chr6_1:13325273-13325292 None:intergenic 60.0%
TCAGGCCCCAGGAGCCAATT+TGG - chr6_1:13325440-13325459 None:intergenic 60.0%
TCAGGCCCCAGGAGCCAATT+TGG - chr6_1:13325440-13325459 None:intergenic 60.0%
GTGCGGCTTCAAGGGCAATC+TGG - chr6_1:13327785-13327804 None:intergenic 60.0%
GATTGCCCTTGAAGCCGCAC+AGG + chr6_1:13327785-13327804 Msa0876010:intron 60.0%
CTGACTCCTGTGCGGCTTCA+AGG - chr6_1:13327794-13327813 None:intergenic 60.0%
GCCGCACAGGAGTCAGCATA+AGG + chr6_1:13327798-13327817 Msa0876010:intron 60.0%
CTGCTCCCTTTGCGACCTCA+AGG - chr6_1:13327995-13328014 None:intergenic 60.0%
AGGTCGCAAAGGGAGCAGCA+AGG + chr6_1:13327997-13328016 Msa0876010:CDS 60.0%
GCAAAGGGAGCAGCAAGGCT+CGG + chr6_1:13328002-13328021 Msa0876010:CDS 60.0%
! TGGGCGGGGGCCCTGAGAGC+GGG - chr6_1:13328422-13328441 None:intergenic 80.0%
! GTGGGCGGGGGCCCTGAGAG+CGG - chr6_1:13328423-13328442 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 13324900 13330507 13324900 ID=Msa0876010;Name=Msa0876010
chr6_1 mRNA 13324900 13330507 13324900 ID=Msa0876010-mRNA-1;Parent=Msa0876010;Name=Msa0876010-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.28|1|1|7|0|357
chr6_1 exon 13324900 13325045 13324900 ID=Msa0876010-mRNA-1:exon:3913;Parent=Msa0876010-mRNA-1
chr6_1 exon 13326943 13327036 13326943 ID=Msa0876010-mRNA-1:exon:3914;Parent=Msa0876010-mRNA-1
chr6_1 exon 13327116 13327164 13327116 ID=Msa0876010-mRNA-1:exon:3915;Parent=Msa0876010-mRNA-1
chr6_1 exon 13327859 13328289 13327859 ID=Msa0876010-mRNA-1:exon:3916;Parent=Msa0876010-mRNA-1
chr6_1 exon 13329939 13330175 13329939 ID=Msa0876010-mRNA-1:exon:3917;Parent=Msa0876010-mRNA-1
chr6_1 exon 13330279 13330347 13330279 ID=Msa0876010-mRNA-1:exon:3918;Parent=Msa0876010-mRNA-1
chr6_1 exon 13330460 13330507 13330460 ID=Msa0876010-mRNA-1:exon:3919;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13324900 13325045 13324900 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13326943 13327036 13326943 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13327116 13327164 13327116 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13327859 13328289 13327859 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13329939 13330175 13329939 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13330279 13330347 13330279 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1 CDS 13330460 13330507 13330460 ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
Gene Sequence

>Msa0876010

ATGTCTCAAAATCGCACTTTGCTCTCCAAAATCGTAACCCTTGTTCTTCAGATTGAGTGCAGTATTTATAGAAGTCATGGGCCTGACCCATCAAAATCGCGCCGCGCCTTGTATAATGGCGTGCCGCGATTTCCTCTTTATAGGAAGTTGTTTAGATTGTTCGCAACATGGGATTGCTCTAGTTTGGCGCTTGTAACTCTTCTTGTTAGAAGAAAATCATGTAATGGAAAATGCTCAAGGAGAAACCACGGAGAAGTGATAATGGTGGCAACATATGGAGGTAACAATGAGGATATATCGACATCAACTCCAACTCCGGTGAATGAAACCACATCTTTGGGGAAGGAAACAGAAACCGTAACATTGGAAATGGAAACAGTGCAACAAGAATCTATGAATAAAGATATTCCACTCCATATTACCCTTGAGGTCGCAAAGGGAGCAGCAAGGCTCGGTGCAGCAACATCTTCAGTCCAGGGGGATGTTTCCGTTAATCATTCAGAGAATATTTCATCATCAATTCCGACACCGGTGGTAACTGATACTTCTCATACTCCTGTTATTATTAATAATACATTTAGCATGCAACTTAAGAATGTGTCCGATGAAATTGTTAGATATGATGTAGCAAAAAATCATGAACATATTCTATCTCCCGTCTGCGAGAAAGCCTTAAATGTCAATAGCATTGTGGCTCCGGAGGGTGCTCTAATACATCCGAATGTAGGCGTACGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAGTCATCAGAGATGTTTGTTGTGGAGAATTTGCTTGAGTTTCCAGATTCTGTTCCAAGCAGTATCAGAGCAAAGAGAAGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGATTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTAAAAAACAATTAAAGACTGTGAGGGCAAAAAGAGCCAAGTGCAGATGCAGAAACCAGAAATGA

Protein sequence

>Msa0876010

MSQNRTLLSKIVTLVLQIECSIYRSHGPDPSKSRRALYNGVPRFPLYRKLFRLFATWDCSSLALVTLLVRRKSCNGKCSRRNHGEVIMVATYGGNNEDISTSTPTPVNETTSLGKETETVTLEMETVQQESMNKDIPLHITLEVAKGAARLGAATSSVQGDVSVNHSENISSSIPTPVVTDTSHTPVIINNTFSMQLKNVSDEIVRYDVAKNHEHILSPVCEKALNVNSIVAPEGALIHPNVGVRNQVDTLSHHLSLPRKSSEMFVVENLLEFPDSVPSSIRAKRSFATHPRSLAERVRRTRISERMRKLQEIVPNIDKQTCTSEMLDLAVEYIKDLKKQLKTVRAKRAKCRCRNQK*