AlfalfaGEDB | Msa0876010

M. sativa cultivar zhongmu-4 / Msa0876010

KEGG: -
GO: GO:0000003 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876010	XP_003625199.1	94.017	117	7	0	241	357	203	319	7.31e-70	231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876010	sp\|Q66GR3\|BH130_ARATH	64.348	115	38	1	246	357	241	355	1.68e-41	151

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876010	G7KUF7	94.017	117	7	0	241	357	203	319	3.49e-70	231

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TFs/TRs:

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Gene ID	Type	Classification
Msa0876010	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876010	MtrunA17_Chr7g0258181	94.017	117	7	0	241	357	203	319	6.72e-74	231
Msa0876010	MtrunA17_Chr1g0174271	70.270	111	33	0	243	353	260	370	9.29e-50	171
Msa0876010	MtrunA17_Chr4g0032951	62.617	107	40	0	251	357	325	431	2.39e-41	150
Msa0876010	MtrunA17_Chr2g0329041	66.019	103	34	1	251	353	302	403	3.91e-39	143
Msa0876010	MtrunA17_Chr3g0087771	51.969	127	54	1	227	353	275	394	3.12e-37	138
Msa0876010	MtrunA17_Chr8g0351881	39.485	233	134	4	127	353	157	388	2.38e-32	124
Msa0876010	MtrunA17_Chr4g0014771	62.069	87	31	1	267	353	106	190	1.86e-30	115
Msa0876010	MtrunA17_Chr1g0213791	51.402	107	49	2	248	353	233	337	2.61e-26	107
Msa0876010	MtrunA17_Chr1g0190731	48.000	75	38	1	274	348	186	259	1.09e-13	71.2
Msa0876010	MtrunA17_Chr4g0074161	50.000	68	33	1	281	348	206	272	1.90e-13	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0876010	AT2G42280.1	64.348	115	38	1	246	357	241	355	1.71e-42	151
Msa0876010	AT2G42280.3	69.000	100	28	1	246	342	241	340	2.21e-37	138
Msa0876010	AT1G51140.1	63.107	103	33	2	251	353	279	376	2.16e-36	135
Msa0876010	AT2G43140.1	55.238	105	46	1	250	353	102	206	2.80e-32	120
Msa0876010	AT2G43140.2	55.238	105	46	1	250	353	199	303	1.19e-31	121
Msa0876010	AT1G05805.1	40.764	157	87	3	202	353	200	355	3.02e-29	116
Msa0876010	AT1G35460.1	59.756	82	33	0	273	354	173	254	1.07e-28	112
Msa0876010	AT4G09180.1	59.770	87	33	1	267	353	172	256	1.14e-27	109
Msa0876010	AT1G35460.2	74.468	47	12	0	273	319	173	219	1.50e-16	78.2
Msa0876010	AT2G24260.2	51.471	68	32	1	281	348	35	101	6.41e-14	71.2

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Find 81 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACGGAGAAGTGATAA+TGG	0.481236	6_1:+13327118	Msa0876010:CDS
AAAGATGTGGTTTCATTCAC+CGG	0.472431	6_1:-13327885	None:intergenic
AACATCTCTGATGACTTTCT+TGG	0.289008	6_1:-13329990	None:intergenic
AACATGGGATTGCTCTAGTT+TGG	0.367247	6_1:+13326961	Msa0876010:CDS
AAGAACAAGGGTTACGATTT+TGG	0.168974	6_1:-13324925	None:intergenic
AATAGCATTGTGGCTCCGGA+GGG	0.612809	6_1:+13328251	Msa0876010:CDS
AATATTCTCTGAATGATTAA+CGG	0.422624	6_1:-13328057	None:intergenic
AATGTATTATTAATAATAAC+AGG	0.390146	6_1:-13328125	None:intergenic
ACCCTTTCGGCAAGGCTTCT+AGG	0.305032	6_1:-13330089	None:intergenic
ACCTCAAGGGTAATATGGAG+TGG	0.592342	6_1:-13327978	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCAGTATTTATAGAAGTCA+TGG	+	chr6_1:13324957-13324976	Msa0876010:CDS	30.0%
GCAGTATTTATAGAAGTCAT+GGG	+	chr6_1:13324958-13324977	Msa0876010:CDS	30.0%
ATTACACACTTCCTATAAAG+AGG	-	chr6_1:13325035-13325054	None:intergenic	30.0%
CCTGTCATTACGTAATATTA+GGG	-	chr6_1:13325193-13325212	None:intergenic	30.0%
TCCTGTCATTACGTAATATT+AGG	-	chr6_1:13325194-13325213	None:intergenic	30.0%
CCTGAAATTATAGCAAAAGT+TGG	+	chr6_1:13325455-13325474	Msa0876010:intron	30.0%
TGGTCATCTTAACTAATTCA+TGG	+	chr6_1:13325949-13325968	Msa0876010:intron	30.0%
GGTCATCTTAACTAATTCAT+GGG	+	chr6_1:13325950-13325969	Msa0876010:intron	30.0%
CCTGAAATTATAGCAAAAGT+TGG	+	chr6_1:13325455-13325474	Msa0876010:intron	30.0%
TATTTCCATCTCCAATGATA+CGG	-	chr6_1:13327721-13327740	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	13324900	13330507	13324900	ID=Msa0876010;Name=Msa0876010
chr6_1	mRNA	13324900	13330507	13324900	ID=Msa0876010-mRNA-1;Parent=Msa0876010;Name=Msa0876010-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0\|0\|0\|0.28\|1\|1\|7\|0\|357
chr6_1	exon	13324900	13325045	13324900	ID=Msa0876010-mRNA-1:exon:3913;Parent=Msa0876010-mRNA-1
chr6_1	exon	13326943	13327036	13326943	ID=Msa0876010-mRNA-1:exon:3914;Parent=Msa0876010-mRNA-1
chr6_1	exon	13327116	13327164	13327116	ID=Msa0876010-mRNA-1:exon:3915;Parent=Msa0876010-mRNA-1
chr6_1	exon	13327859	13328289	13327859	ID=Msa0876010-mRNA-1:exon:3916;Parent=Msa0876010-mRNA-1
chr6_1	exon	13329939	13330175	13329939	ID=Msa0876010-mRNA-1:exon:3917;Parent=Msa0876010-mRNA-1
chr6_1	exon	13330279	13330347	13330279	ID=Msa0876010-mRNA-1:exon:3918;Parent=Msa0876010-mRNA-1
chr6_1	exon	13330460	13330507	13330460	ID=Msa0876010-mRNA-1:exon:3919;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13324900	13325045	13324900	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13326943	13327036	13326943	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13327116	13327164	13327116	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13327859	13328289	13327859	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13329939	13330175	13329939	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13330279	13330347	13330279	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1
chr6_1	CDS	13330460	13330507	13330460	ID=Msa0876010-mRNA-1:cds;Parent=Msa0876010-mRNA-1

Gene Sequence

>Msa0876010

ATGTCTCAAAATCGCACTTTGCTCTCCAAAATCGTAACCCTTGTTCTTCAGATTGAGTGCAGTATTTATAGAAGTCATGGGCCTGACCCATCAAAATCGCGCCGCGCCTTGTATAATGGCGTGCCGCGATTTCCTCTTTATAGGAAGTTGTTTAGATTGTTCGCAACATGGGATTGCTCTAGTTTGGCGCTTGTAACTCTTCTTGTTAGAAGAAAATCATGTAATGGAAAATGCTCAAGGAGAAACCACGGAGAAGTGATAATGGTGGCAACATATGGAGGTAACAATGAGGATATATCGACATCAACTCCAACTCCGGTGAATGAAACCACATCTTTGGGGAAGGAAACAGAAACCGTAACATTGGAAATGGAAACAGTGCAACAAGAATCTATGAATAAAGATATTCCACTCCATATTACCCTTGAGGTCGCAAAGGGAGCAGCAAGGCTCGGTGCAGCAACATCTTCAGTCCAGGGGGATGTTTCCGTTAATCATTCAGAGAATATTTCATCATCAATTCCGACACCGGTGGTAACTGATACTTCTCATACTCCTGTTATTATTAATAATACATTTAGCATGCAACTTAAGAATGTGTCCGATGAAATTGTTAGATATGATGTAGCAAAAAATCATGAACATATTCTATCTCCCGTCTGCGAGAAAGCCTTAAATGTCAATAGCATTGTGGCTCCGGAGGGTGCTCTAATACATCCGAATGTAGGCGTACGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAGTCATCAGAGATGTTTGTTGTGGAGAATTTGCTTGAGTTTCCAGATTCTGTTCCAAGCAGTATCAGAGCAAAGAGAAGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGATTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTAAAAAACAATTAAAGACTGTGAGGGCAAAAAGAGCCAAGTGCAGATGCAGAAACCAGAAATGA

Protein sequence

>Msa0876010

MSQNRTLLSKIVTLVLQIECSIYRSHGPDPSKSRRALYNGVPRFPLYRKLFRLFATWDCSSLALVTLLVRRKSCNGKCSRRNHGEVIMVATYGGNNEDISTSTPTPVNETTSLGKETETVTLEMETVQQESMNKDIPLHITLEVAKGAARLGAATSSVQGDVSVNHSENISSSIPTPVVTDTSHTPVIINNTFSMQLKNVSDEIVRYDVAKNHEHILSPVCEKALNVNSIVAPEGALIHPNVGVRNQVDTLSHHLSLPRKSSEMFVVENLLEFPDSVPSSIRAKRSFATHPRSLAERVRRTRISERMRKLQEIVPNIDKQTCTSEMLDLAVEYIKDLKKQLKTVRAKRAKCRCRNQK*