Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876140 | MBA0874397.1 | 79.021 | 143 | 22 | 1 | 111 | 253 | 1 | 135 | 4.83e-75 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876140 | sp|Q9CAI5|CKL2_ARATH | 77.027 | 148 | 30 | 2 | 111 | 255 | 1 | 147 | 9.75e-73 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876140 | A0A7J9MU44 | 79.021 | 143 | 22 | 1 | 111 | 253 | 1 | 135 | 2.31e-75 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876140 | MtrunA17_Chr8g0342821 | 81.757 | 148 | 23 | 2 | 111 | 255 | 1 | 147 | 2.02e-78 | 244 |
| Msa0876140 | MtrunA17_Chr4g0071031 | 78.378 | 148 | 28 | 2 | 111 | 255 | 1 | 147 | 6.30e-75 | 234 |
| Msa0876140 | MtrunA17_Chr2g0329981 | 79.054 | 148 | 27 | 2 | 111 | 255 | 1 | 147 | 8.98e-75 | 234 |
| Msa0876140 | MtrunA17_Chr2g0299661 | 70.748 | 147 | 41 | 1 | 111 | 255 | 1 | 147 | 4.80e-67 | 214 |
| Msa0876140 | MtrunA17_Chr1g0166821 | 67.133 | 143 | 43 | 2 | 116 | 255 | 7 | 148 | 3.95e-63 | 204 |
| Msa0876140 | MtrunA17_Chr1g0183631 | 64.789 | 142 | 48 | 1 | 116 | 255 | 6 | 147 | 2.14e-62 | 202 |
| Msa0876140 | MtrunA17_Chr7g0261501 | 61.972 | 142 | 52 | 1 | 116 | 255 | 6 | 147 | 9.89e-61 | 198 |
| Msa0876140 | MtrunA17_Chr1g0187571 | 63.380 | 142 | 50 | 1 | 116 | 255 | 7 | 148 | 2.25e-60 | 197 |
| Msa0876140 | MtrunA17_Chr6g0486611 | 63.636 | 143 | 48 | 2 | 116 | 255 | 6 | 147 | 2.96e-56 | 185 |
| Msa0876140 | MtrunA17_Chr1g0167261 | 56.944 | 144 | 56 | 2 | 116 | 255 | 7 | 148 | 5.81e-54 | 177 |
| Msa0876140 | MtrunA17_Chr8g0390211 | 58.784 | 148 | 57 | 2 | 111 | 255 | 1 | 147 | 2.50e-52 | 175 |
| Msa0876140 | MtrunA17_Chr3g0140071 | 56.081 | 148 | 61 | 2 | 111 | 255 | 1 | 147 | 7.79e-51 | 171 |
| Msa0876140 | MtrunA17_Chr1g0146151 | 54.730 | 148 | 63 | 2 | 111 | 255 | 1 | 147 | 2.11e-50 | 170 |
| Msa0876140 | MtrunA17_Chr1g0213321 | 33.333 | 135 | 82 | 2 | 119 | 245 | 119 | 253 | 4.80e-21 | 92.0 |
| Msa0876140 | MtrunA17_Chr7g0214531 | 31.429 | 140 | 83 | 2 | 119 | 245 | 37 | 176 | 1.67e-20 | 90.5 |
| Msa0876140 | MtrunA17_Chr1g0146301 | 32.090 | 134 | 84 | 2 | 119 | 245 | 124 | 257 | 2.51e-20 | 90.1 |
| Msa0876140 | MtrunA17_Chr3g0140431 | 33.582 | 134 | 82 | 2 | 119 | 245 | 38 | 171 | 2.67e-20 | 89.7 |
| Msa0876140 | MtrunA17_Chr7g0253211 | 33.094 | 139 | 81 | 2 | 119 | 245 | 324 | 462 | 3.80e-18 | 83.6 |
| Msa0876140 | MtrunA17_Chr6g0454501 | 86.047 | 43 | 6 | 0 | 40 | 82 | 40 | 82 | 1.68e-17 | 78.6 |
| Msa0876140 | MtrunA17_Chr8g0340491 | 31.206 | 141 | 83 | 3 | 119 | 245 | 128 | 268 | 6.96e-16 | 77.0 |
| Msa0876140 | MtrunA17_Chr4g0072831 | 28.148 | 135 | 82 | 3 | 110 | 244 | 1 | 120 | 3.75e-11 | 62.4 |
| Msa0876140 | MtrunA17_Chr3g0107011 | 29.851 | 134 | 85 | 3 | 118 | 244 | 13 | 144 | 7.01e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876140 | AT1G72710.1 | 77.027 | 148 | 30 | 2 | 111 | 255 | 1 | 147 | 9.91e-74 | 232 |
| Msa0876140 | AT4G26100.1 | 75.000 | 148 | 33 | 2 | 111 | 255 | 1 | 147 | 3.24e-72 | 228 |
| Msa0876140 | AT2G19470.1 | 73.649 | 148 | 35 | 2 | 111 | 255 | 1 | 147 | 1.67e-71 | 225 |
| Msa0876140 | AT5G57015.1 | 73.649 | 148 | 35 | 2 | 111 | 255 | 1 | 147 | 5.20e-71 | 224 |
| Msa0876140 | AT1G03930.1 | 67.606 | 142 | 44 | 1 | 116 | 255 | 6 | 147 | 3.25e-65 | 210 |
| Msa0876140 | AT5G44100.1 | 64.789 | 142 | 48 | 1 | 116 | 255 | 6 | 147 | 1.05e-62 | 204 |
| Msa0876140 | AT5G44100.2 | 64.789 | 142 | 48 | 1 | 116 | 255 | 6 | 147 | 1.05e-62 | 204 |
| Msa0876140 | AT5G43320.1 | 61.268 | 142 | 53 | 1 | 116 | 255 | 6 | 147 | 2.08e-59 | 195 |
| Msa0876140 | AT3G23340.1 | 61.268 | 142 | 53 | 1 | 116 | 255 | 6 | 147 | 2.26e-59 | 194 |
| Msa0876140 | AT5G43320.2 | 61.268 | 142 | 53 | 1 | 116 | 255 | 6 | 147 | 4.56e-59 | 191 |
| Msa0876140 | AT5G43320.3 | 61.268 | 142 | 53 | 1 | 116 | 255 | 6 | 147 | 4.56e-59 | 191 |
| Msa0876140 | AT4G14340.2 | 62.676 | 142 | 51 | 1 | 116 | 255 | 12 | 153 | 4.58e-59 | 191 |
| Msa0876140 | AT4G14340.1 | 62.676 | 142 | 51 | 1 | 116 | 255 | 12 | 153 | 7.60e-59 | 193 |
| Msa0876140 | AT1G04440.1 | 61.972 | 142 | 52 | 1 | 116 | 255 | 6 | 147 | 1.07e-58 | 193 |
| Msa0876140 | AT4G28540.1 | 59.155 | 142 | 56 | 1 | 116 | 255 | 10 | 151 | 3.03e-57 | 190 |
| Msa0876140 | AT4G28860.2 | 56.463 | 147 | 62 | 1 | 111 | 255 | 1 | 147 | 8.47e-52 | 173 |
| Msa0876140 | AT4G28880.3 | 58.784 | 148 | 57 | 2 | 111 | 255 | 1 | 147 | 9.84e-52 | 174 |
| Msa0876140 | AT4G28880.2 | 58.784 | 148 | 57 | 2 | 111 | 255 | 1 | 147 | 9.84e-52 | 174 |
| Msa0876140 | AT4G28880.1 | 58.784 | 148 | 57 | 2 | 111 | 255 | 1 | 147 | 9.84e-52 | 174 |
| Msa0876140 | AT4G28880.4 | 58.784 | 148 | 57 | 2 | 111 | 255 | 1 | 147 | 9.84e-52 | 174 |
| Msa0876140 | AT4G28860.1 | 56.463 | 147 | 62 | 1 | 111 | 255 | 1 | 147 | 1.98e-51 | 173 |
| Msa0876140 | AT3G23340.2 | 57.480 | 127 | 52 | 1 | 131 | 255 | 7 | 133 | 3.22e-47 | 162 |
| Msa0876140 | AT4G08800.1 | 56.522 | 138 | 30 | 3 | 111 | 245 | 1 | 111 | 6.62e-40 | 139 |
| Msa0876140 | AT2G25760.1 | 31.206 | 141 | 83 | 2 | 119 | 245 | 107 | 247 | 1.35e-20 | 91.3 |
| Msa0876140 | AT2G25760.2 | 31.206 | 141 | 83 | 2 | 119 | 245 | 107 | 247 | 1.50e-20 | 90.9 |
| Msa0876140 | AT3G03940.1 | 34.532 | 139 | 79 | 2 | 119 | 245 | 140 | 278 | 3.84e-20 | 89.7 |
| Msa0876140 | AT3G13670.1 | 30.496 | 141 | 83 | 2 | 119 | 245 | 137 | 276 | 2.75e-19 | 87.4 |
| Msa0876140 | AT5G18190.2 | 32.374 | 139 | 82 | 2 | 119 | 245 | 130 | 268 | 1.03e-18 | 85.5 |
| Msa0876140 | AT5G18190.1 | 32.374 | 139 | 82 | 2 | 119 | 245 | 130 | 268 | 1.03e-18 | 85.5 |
Find 46 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAATTTCCTCATGGGTTT+AGG | 0.228856 | 6_1:-13841488 | Msa0876140:CDS |
| ATTTATTCAATTTCTGTAAT+AGG | 0.238085 | 6_1:-13841691 | Msa0876140:CDS |
| TCTTTCGGAGAGATCTATTT+AGG | 0.249141 | 6_1:-13842385 | Msa0876140:intron |
| TTTCATGACTTTGAGTTTCA+TGG | 0.251776 | 6_1:+13843339 | None:intergenic |
| TTCCGTCTTGGGAGGAAAAT+TGG | 0.260322 | 6_1:-13842415 | Msa0876140:CDS |
| TTCTTCATTAGTTTGAATAT+TGG | 0.282133 | 6_1:+13842275 | None:intergenic |
| CTCTGTTTCTGAATTGTTTG+TGG | 0.329808 | 6_1:+13843304 | None:intergenic |
| GAATATGAAGGAACAAATAA+TGG | 0.336170 | 6_1:-13843073 | Msa0876140:intron |
| ACAATTTCCTCATGGGTTTA+GGG | 0.340991 | 6_1:-13841487 | Msa0876140:CDS |
| AAAATTGGTAGCGGATCTTT+CGG | 0.404618 | 6_1:-13842400 | Msa0876140:CDS |
| TCAGCAATAAGTACTCCTTC+AGG | 0.447337 | 6_1:+13843176 | None:intergenic |
| TGTCATCAACTTCTTGTGGT+TGG | 0.447651 | 6_1:+13843261 | None:intergenic |
| TCTTATGCTTGCTGATCAAA+TGG | 0.460267 | 6_1:-13841648 | Msa0876140:intron |
| GTGGGAATAAGTTCCGTCTT+GGG | 0.465497 | 6_1:-13842426 | Msa0876140:CDS |
| ACACCGGACCATTTCACATT+CGG | 0.480710 | 6_1:+13841767 | None:intergenic |
| CTGGGATACCGAATGTGAAA+TGG | 0.480856 | 6_1:-13841775 | Msa0876140:CDS |
| AACTCAAAGTCATGAAATAG+AGG | 0.496372 | 6_1:-13843333 | Msa0876140:CDS |
| CGGAACTTATTCCCACTTCG+AGG | 0.497092 | 6_1:+13842433 | None:intergenic |
| ATCCTAGTGATGGATTTACT+TGG | 0.499759 | 6_1:-13841728 | Msa0876140:CDS |
| TTTACTTGGCCCTAGTCTTG+AGG | 0.502228 | 6_1:-13841714 | Msa0876140:CDS |
| AGTGGGAATAAGTTCCGTCT+TGG | 0.516046 | 6_1:-13842427 | Msa0876140:CDS |
| AAGCCAGACAATTTCCTCAT+GGG | 0.517628 | 6_1:-13841494 | Msa0876140:CDS |
| TTGAATAAATCCTCAAGACT+AGG | 0.522442 | 6_1:+13841704 | None:intergenic |
| AAATGTTCAACATGTTAATG+AGG | 0.525392 | 6_1:-13843204 | Msa0876140:CDS |
| GAAGTATCGATTACAGAAGA+AGG | 0.525475 | 6_1:-13841962 | Msa0876140:intron |
| TTTAAGCAACGAAGAGCGTA+AGG | 0.527688 | 6_1:-13843041 | Msa0876140:CDS |
| AAACTCTATATCTGAAATGT+TGG | 0.529644 | 6_1:+13843238 | None:intergenic |
| AAACCCATGAGGAAATTGTC+TGG | 0.531680 | 6_1:+13841491 | None:intergenic |
| GTGAAATGGTCCGGTGTCGA+AGG | 0.536640 | 6_1:-13841761 | Msa0876140:CDS |
| AAAGCCAGACAATTTCCTCA+TGG | 0.544831 | 6_1:-13841495 | Msa0876140:CDS |
| TGAATAAATCCTCAAGACTA+GGG | 0.545896 | 6_1:+13841705 | None:intergenic |
| ATTGTACTCTCCTTCGACAC+CGG | 0.548807 | 6_1:+13841751 | None:intergenic |
| AGAGTACAATATCCTAGTGA+TGG | 0.570391 | 6_1:-13841738 | Msa0876140:CDS |
| ATACCGAATGTGAAATGGTC+CGG | 0.578759 | 6_1:-13841770 | Msa0876140:CDS |
| AATGTTCAACATGTTAATGA+GGG | 0.586451 | 6_1:-13843203 | Msa0876140:CDS |
| TTGGTGTCATCAACTTCTTG+TGG | 0.607100 | 6_1:+13843257 | None:intergenic |
| ATTTCCTCATGGGTTTAGGG+AGG | 0.628140 | 6_1:-13841484 | Msa0876140:CDS |
| GGTTTAATGGAACCTCGAAG+TGG | 0.630119 | 6_1:-13842445 | Msa0876140:CDS |
| CTTGGGAGGAAAATTGGTAG+CGG | 0.633001 | 6_1:-13842409 | Msa0876140:CDS |
| GGAATAAGTTCCGTCTTGGG+AGG | 0.637350 | 6_1:-13842423 | Msa0876140:CDS |
| GAAGGAGTACTTATTGCTGA+TGG | 0.638725 | 6_1:-13843173 | Msa0876140:intron |
| GGCCAAGTAAATCCATCACT+AGG | 0.640405 | 6_1:+13841726 | None:intergenic |
| GTTAATGAGGGTGAACCTGA+AGG | 0.640781 | 6_1:-13843191 | Msa0876140:CDS |
| CTGCAAAAGAAGATAAGCGA+CGG | 0.640793 | 6_1:+13843018 | None:intergenic |
| GTTTAATGGAACCTCGAAGT+GGG | 0.643820 | 6_1:-13842444 | Msa0876140:CDS |
| CACGCCTCCCTAAACCCATG+AGG | 0.734143 | 6_1:+13841480 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTGTGAATTTT+AGG | - | chr6_1:13842528-13842547 | Msa0876140:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | - | chr6_1:13842529-13842548 | Msa0876140:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | - | chr6_1:13842661-13842680 | Msa0876140:intron | 10.0% |
| !!! | TTTTTTTTTTTGTGAATTTT+AGG | - | chr6_1:13842528-13842547 | Msa0876140:intron | 10.0% |
| !!! | TTTTTTTTTTGTGAATTTTA+GGG | - | chr6_1:13842529-13842548 | Msa0876140:intron | 10.0% |
| !!! | TTTTTATTCTTTTGAATTTT+TGG | - | chr6_1:13842661-13842680 | Msa0876140:intron | 10.0% |
| !! | AATTTATGTTATCATTTGTT+AGG | - | chr6_1:13841737-13841756 | Msa0876140:CDS | 15.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | + | chr6_1:13842628-13842647 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | + | chr6_1:13842629-13842648 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | - | chr6_1:13843164-13843183 | Msa0876140:intron | 15.0% |
| !! | AATTTATGTTATCATTTGTT+AGG | - | chr6_1:13841737-13841756 | Msa0876140:CDS | 15.0% |
| !!! | CATTATCTTTTTCAAAATTT+GGG | + | chr6_1:13842628-13842647 | None:intergenic | 15.0% |
| !!! | TCATTATCTTTTTCAAAATT+TGG | + | chr6_1:13842629-13842648 | None:intergenic | 15.0% |
| !! | ATTTATTCAATTTCTGTAAT+AGG | - | chr6_1:13843164-13843183 | Msa0876140:intron | 15.0% |
| !!! | GAATTTTTGTGAAATTGTTA+AGG | + | chr6_1:13842117-13842136 | None:intergenic | 20.0% |
| !!! | AGGAATAAAATTGGATTTTA+GGG | + | chr6_1:13842206-13842225 | None:intergenic | 20.0% |
| !!! | TTCAATTCTGATTTTCAATT+AGG | - | chr6_1:13842388-13842407 | Msa0876140:CDS | 20.0% |
| !!! | TCAATTCTGATTTTCAATTA+GGG | - | chr6_1:13842389-13842408 | Msa0876140:CDS | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | + | chr6_1:13842583-13842602 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | + | chr6_1:13842699-13842718 | None:intergenic | 20.0% |
| !! | TTATTGAAGTTTGATGAAAA+GGG | - | chr6_1:13842712-13842731 | Msa0876140:intron | 20.0% |
| !! | TTAAGACATTATAAGAAAAG+TGG | + | chr6_1:13843273-13843292 | None:intergenic | 20.0% |
| !!! | GAATTTTTGTGAAATTGTTA+AGG | + | chr6_1:13842117-13842136 | None:intergenic | 20.0% |
| !!! | AGGAATAAAATTGGATTTTA+GGG | + | chr6_1:13842206-13842225 | None:intergenic | 20.0% |
| !!! | TTCAATTCTGATTTTCAATT+AGG | - | chr6_1:13842388-13842407 | Msa0876140:CDS | 20.0% |
| !!! | TCAATTCTGATTTTCAATTA+GGG | - | chr6_1:13842389-13842408 | Msa0876140:CDS | 20.0% |
| !!! | TTCTTCATTAGTTTGAATAT+TGG | + | chr6_1:13842583-13842602 | None:intergenic | 20.0% |
| !!! | TCAATAACAACAAAAGTATT+CGG | + | chr6_1:13842699-13842718 | None:intergenic | 20.0% |
| !! | TTATTGAAGTTTGATGAAAA+GGG | - | chr6_1:13842712-13842731 | Msa0876140:intron | 20.0% |
| !! | TTAAGACATTATAAGAAAAG+TGG | + | chr6_1:13843273-13843292 | None:intergenic | 20.0% |
| !! | AAACTCTATATCTGAAATGT+TGG | + | chr6_1:13841620-13841639 | None:intergenic | 25.0% |
| ! | AAATGTTCAACATGTTAATG+AGG | - | chr6_1:13841651-13841670 | Msa0876140:CDS | 25.0% |
| ! | AATGTTCAACATGTTAATGA+GGG | - | chr6_1:13841652-13841671 | Msa0876140:CDS | 25.0% |
| ! | GAATATGAAGGAACAAATAA+TGG | - | chr6_1:13841782-13841801 | Msa0876140:intron | 25.0% |
| !! | TTAGTGTCATTAAACGTATT+TGG | - | chr6_1:13841927-13841946 | Msa0876140:intron | 25.0% |
| !!! | AAAATTGGATTTTAGGGTTT+TGG | + | chr6_1:13842200-13842219 | None:intergenic | 25.0% |
| !! | GAGGAATAAAATTGGATTTT+AGG | + | chr6_1:13842207-13842226 | None:intergenic | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | - | chr6_1:13842397-13842416 | Msa0876140:CDS | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | - | chr6_1:13842555-13842574 | Msa0876140:intron | 25.0% |
| ! | GTTATTGAAGTTTGATGAAA+AGG | - | chr6_1:13842711-13842730 | Msa0876140:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | - | chr6_1:13842792-13842811 | Msa0876140:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | - | chr6_1:13842921-13842940 | Msa0876140:intron | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | + | chr6_1:13842979-13842998 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | + | chr6_1:13842980-13842999 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | - | chr6_1:13842981-13843000 | Msa0876140:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | - | chr6_1:13843020-13843039 | Msa0876140:CDS | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | - | chr6_1:13843332-13843351 | Msa0876140:CDS | 25.0% |
| !! | AAACTCTATATCTGAAATGT+TGG | + | chr6_1:13841620-13841639 | None:intergenic | 25.0% |
| ! | AAATGTTCAACATGTTAATG+AGG | - | chr6_1:13841651-13841670 | Msa0876140:CDS | 25.0% |
| ! | AATGTTCAACATGTTAATGA+GGG | - | chr6_1:13841652-13841671 | Msa0876140:CDS | 25.0% |
| ! | GAATATGAAGGAACAAATAA+TGG | - | chr6_1:13841782-13841801 | Msa0876140:intron | 25.0% |
| !! | TTAGTGTCATTAAACGTATT+TGG | - | chr6_1:13841927-13841946 | Msa0876140:intron | 25.0% |
| !!! | AAAATTGGATTTTAGGGTTT+TGG | + | chr6_1:13842200-13842219 | None:intergenic | 25.0% |
| !! | GAGGAATAAAATTGGATTTT+AGG | + | chr6_1:13842207-13842226 | None:intergenic | 25.0% |
| !! | GATTTTCAATTAGGGTTTAA+TGG | - | chr6_1:13842397-13842416 | Msa0876140:CDS | 25.0% |
| !!! | TTAATTTGTGTTTTTGTTGC+AGG | - | chr6_1:13842555-13842574 | Msa0876140:intron | 25.0% |
| ! | GTTATTGAAGTTTGATGAAA+AGG | - | chr6_1:13842711-13842730 | Msa0876140:intron | 25.0% |
| !! | TTTGAAACAAAGAGTTGTAT+AGG | - | chr6_1:13842792-13842811 | Msa0876140:intron | 25.0% |
| ! | AGGTAATTAGATGATTGATT+AGG | - | chr6_1:13842921-13842940 | Msa0876140:intron | 25.0% |
| ! | ATACACAAATTCACTAAGTT+GGG | + | chr6_1:13842979-13842998 | None:intergenic | 25.0% |
| ! | AATACACAAATTCACTAAGT+TGG | + | chr6_1:13842980-13842999 | None:intergenic | 25.0% |
| !! | CTTAGTGAATTTGTGTATTT+TGG | - | chr6_1:13842981-13843000 | Msa0876140:intron | 25.0% |
| ! | TAGACTTAATATTACTCACT+TGG | - | chr6_1:13843020-13843039 | Msa0876140:CDS | 25.0% |
| !!! | ATACCAAGTCATTTTTACAT+CGG | - | chr6_1:13843332-13843351 | Msa0876140:CDS | 25.0% |
| ! | TTTCATGACTTTGAGTTTCA+TGG | + | chr6_1:13841519-13841538 | None:intergenic | 30.0% |
| AACTCAAAGTCATGAAATAG+AGG | - | chr6_1:13841522-13841541 | Msa0876140:CDS | 30.0% | |
| CAATATGCATTCGAATATGA+AGG | - | chr6_1:13841770-13841789 | Msa0876140:CDS | 30.0% | |
| ATGAAGTAAGACGGAAAAAA+GGG | - | chr6_1:13841867-13841886 | Msa0876140:intron | 30.0% | |
| ATTGATTGCGTCAATGTATT+CGG | - | chr6_1:13841898-13841917 | Msa0876140:intron | 30.0% | |
| ! | AATTTTAGGCTTAAAACCTG+TGG | + | chr6_1:13842087-13842106 | None:intergenic | 30.0% |
| !!! | GTTAAGGCGTTGAAAATTTT+AGG | + | chr6_1:13842101-13842120 | None:intergenic | 30.0% |
| GGGAGTAACAAAAATATTTG+GGG | + | chr6_1:13842145-13842164 | None:intergenic | 30.0% | |
| CGGGAGTAACAAAAATATTT+GGG | + | chr6_1:13842146-13842165 | None:intergenic | 30.0% | |
| GTGAGATTGAGGAATAAAAT+TGG | + | chr6_1:13842215-13842234 | None:intergenic | 30.0% | |
| AATGAGATTGAAGGAGATTT+AGG | + | chr6_1:13842255-13842274 | None:intergenic | 30.0% | |
| AATCTCCTTCAATCTCATTA+TGG | - | chr6_1:13842256-13842275 | Msa0876140:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | - | chr6_1:13842800-13842819 | Msa0876140:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | - | chr6_1:13842801-13842820 | Msa0876140:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | - | chr6_1:13842818-13842837 | Msa0876140:intron | 30.0% | |
| GATTACAGAAGAAGGTAATT+AGG | - | chr6_1:13842901-13842920 | Msa0876140:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | - | chr6_1:13843029-13843048 | Msa0876140:CDS | 30.0% | |
| TGAATAAATCCTCAAGACTA+GGG | + | chr6_1:13843153-13843172 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | + | chr6_1:13843154-13843173 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | + | chr6_1:13843240-13843259 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | + | chr6_1:13843241-13843260 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | - | chr6_1:13843333-13843352 | Msa0876140:CDS | 30.0% |
| ! | TTTCATGACTTTGAGTTTCA+TGG | + | chr6_1:13841519-13841538 | None:intergenic | 30.0% |
| AACTCAAAGTCATGAAATAG+AGG | - | chr6_1:13841522-13841541 | Msa0876140:CDS | 30.0% | |
| CAATATGCATTCGAATATGA+AGG | - | chr6_1:13841770-13841789 | Msa0876140:CDS | 30.0% | |
| ATGAAGTAAGACGGAAAAAA+GGG | - | chr6_1:13841867-13841886 | Msa0876140:intron | 30.0% | |
| ATTGATTGCGTCAATGTATT+CGG | - | chr6_1:13841898-13841917 | Msa0876140:intron | 30.0% | |
| ! | AATTTTAGGCTTAAAACCTG+TGG | + | chr6_1:13842087-13842106 | None:intergenic | 30.0% |
| !!! | GTTAAGGCGTTGAAAATTTT+AGG | + | chr6_1:13842101-13842120 | None:intergenic | 30.0% |
| GGGAGTAACAAAAATATTTG+GGG | + | chr6_1:13842145-13842164 | None:intergenic | 30.0% | |
| CGGGAGTAACAAAAATATTT+GGG | + | chr6_1:13842146-13842165 | None:intergenic | 30.0% | |
| GTGAGATTGAGGAATAAAAT+TGG | + | chr6_1:13842215-13842234 | None:intergenic | 30.0% | |
| AATGAGATTGAAGGAGATTT+AGG | + | chr6_1:13842255-13842274 | None:intergenic | 30.0% | |
| AATCTCCTTCAATCTCATTA+TGG | - | chr6_1:13842256-13842275 | Msa0876140:intron | 30.0% | |
| AAAGAGTTGTATAGGCAATA+TGG | - | chr6_1:13842800-13842819 | Msa0876140:intron | 30.0% | |
| AAGAGTTGTATAGGCAATAT+GGG | - | chr6_1:13842801-13842820 | Msa0876140:intron | 30.0% | |
| TATGGGATATTGAATTTCGT+TGG | - | chr6_1:13842818-13842837 | Msa0876140:intron | 30.0% | |
| GATTACAGAAGAAGGTAATT+AGG | - | chr6_1:13842901-13842920 | Msa0876140:intron | 30.0% | |
| TATTACTCACTTGGCTTAAA+CGG | - | chr6_1:13843029-13843048 | Msa0876140:CDS | 30.0% | |
| TGAATAAATCCTCAAGACTA+GGG | + | chr6_1:13843153-13843172 | None:intergenic | 30.0% | |
| TTGAATAAATCCTCAAGACT+AGG | + | chr6_1:13843154-13843173 | None:intergenic | 30.0% | |
| TTACAAGCTTATGCAATACA+GGG | + | chr6_1:13843240-13843259 | None:intergenic | 30.0% | |
| ATTACAAGCTTATGCAATAC+AGG | + | chr6_1:13843241-13843260 | None:intergenic | 30.0% | |
| !!! | TACCAAGTCATTTTTACATC+GGG | - | chr6_1:13843333-13843352 | Msa0876140:CDS | 30.0% |
| !! | CTCTGTTTCTGAATTGTTTG+TGG | + | chr6_1:13841554-13841573 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCGTCTTACTTCA+TGG | + | chr6_1:13841868-13841887 | None:intergenic | 35.0% |
| CATGAAGTAAGACGGAAAAA+AGG | - | chr6_1:13841866-13841885 | Msa0876140:intron | 35.0% | |
| GCGGGAGTAACAAAAATATT+TGG | + | chr6_1:13842147-13842166 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTTTTGGAGTTGT+GGG | + | chr6_1:13842191-13842210 | None:intergenic | 35.0% |
| !!! | ATTTTAGGGTTTTGGAGTTG+TGG | + | chr6_1:13842192-13842211 | None:intergenic | 35.0% |
| ATTGAGACAAAGTGAGATTG+AGG | + | chr6_1:13842226-13842245 | None:intergenic | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | - | chr6_1:13842455-13842474 | Msa0876140:intron | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | - | chr6_1:13842470-13842489 | Msa0876140:intron | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | - | chr6_1:13842850-13842869 | Msa0876140:intron | 35.0% |
| !! | GAAGTATCGATTACAGAAGA+AGG | - | chr6_1:13842893-13842912 | Msa0876140:intron | 35.0% |
| ! | GATGATTGATTAGGTTAGTC+TGG | - | chr6_1:13842930-13842949 | Msa0876140:intron | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | - | chr6_1:13843039-13843058 | Msa0876140:CDS | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | - | chr6_1:13843040-13843059 | Msa0876140:CDS | 35.0% |
| GTTTCTTTCCTTTGTTAGCT+GGG | - | chr6_1:13843062-13843081 | Msa0876140:CDS | 35.0% | |
| AGAGTACAATATCCTAGTGA+TGG | - | chr6_1:13843117-13843136 | Msa0876140:intron | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | - | chr6_1:13843127-13843146 | Msa0876140:intron | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | - | chr6_1:13843207-13843226 | Msa0876140:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | - | chr6_1:13843368-13843387 | Msa0876140:CDS | 35.0% | |
| !! | CTCTGTTTCTGAATTGTTTG+TGG | + | chr6_1:13841554-13841573 | None:intergenic | 35.0% |
| !!! | CTTTTTTCCGTCTTACTTCA+TGG | + | chr6_1:13841868-13841887 | None:intergenic | 35.0% |
| CATGAAGTAAGACGGAAAAA+AGG | - | chr6_1:13841866-13841885 | Msa0876140:intron | 35.0% | |
| GCGGGAGTAACAAAAATATT+TGG | + | chr6_1:13842147-13842166 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGTTTTGGAGTTGT+GGG | + | chr6_1:13842191-13842210 | None:intergenic | 35.0% |
| !!! | ATTTTAGGGTTTTGGAGTTG+TGG | + | chr6_1:13842192-13842211 | None:intergenic | 35.0% |
| ATTGAGACAAAGTGAGATTG+AGG | + | chr6_1:13842226-13842245 | None:intergenic | 35.0% | |
| !! | AAAATTGGTAGCGGATCTTT+CGG | - | chr6_1:13842455-13842474 | Msa0876140:intron | 35.0% |
| TCTTTCGGAGAGATCTATTT+AGG | - | chr6_1:13842470-13842489 | Msa0876140:intron | 35.0% | |
| ! | GTTTTCGATACTGAACTTGT+TGG | - | chr6_1:13842850-13842869 | Msa0876140:intron | 35.0% |
| !! | GAAGTATCGATTACAGAAGA+AGG | - | chr6_1:13842893-13842912 | Msa0876140:intron | 35.0% |
| ! | GATGATTGATTAGGTTAGTC+TGG | - | chr6_1:13842930-13842949 | Msa0876140:intron | 35.0% |
| !!! | TTGGCTTAAACGGTTTTTTC+TGG | - | chr6_1:13843039-13843058 | Msa0876140:CDS | 35.0% |
| !!! | TGGCTTAAACGGTTTTTTCT+GGG | - | chr6_1:13843040-13843059 | Msa0876140:CDS | 35.0% |
| GTTTCTTTCCTTTGTTAGCT+GGG | - | chr6_1:13843062-13843081 | Msa0876140:CDS | 35.0% | |
| AGAGTACAATATCCTAGTGA+TGG | - | chr6_1:13843117-13843136 | Msa0876140:intron | 35.0% | |
| !! | ATCCTAGTGATGGATTTACT+TGG | - | chr6_1:13843127-13843146 | Msa0876140:intron | 35.0% |
| ! | TCTTATGCTTGCTGATCAAA+TGG | - | chr6_1:13843207-13843226 | Msa0876140:CDS | 35.0% |
| ACAATTTCCTCATGGGTTTA+GGG | - | chr6_1:13843368-13843387 | Msa0876140:CDS | 35.0% | |
| TGTCATCAACTTCTTGTGGT+TGG | + | chr6_1:13841597-13841616 | None:intergenic | 40.0% | |
| !! | TTGGTGTCATCAACTTCTTG+TGG | + | chr6_1:13841601-13841620 | None:intergenic | 40.0% |
| TCAGCAATAAGTACTCCTTC+AGG | + | chr6_1:13841682-13841701 | None:intergenic | 40.0% | |
| !! | GAAGGAGTACTTATTGCTGA+TGG | - | chr6_1:13841682-13841701 | Msa0876140:CDS | 40.0% |
| ! | TTTAAGCAACGAAGAGCGTA+AGG | - | chr6_1:13841814-13841833 | Msa0876140:intron | 40.0% |
| CTGCAAAAGAAGATAAGCGA+CGG | + | chr6_1:13841840-13841859 | None:intergenic | 40.0% | |
| AGCACAACCATGAAGTAAGA+CGG | - | chr6_1:13841858-13841877 | Msa0876140:intron | 40.0% | |
| TGGAAGAGAGCAAAACTCAT+AGG | - | chr6_1:13841947-13841966 | Msa0876140:intron | 40.0% | |
| TTGCGACAGTTTGAAGACAA+GGG | + | chr6_1:13842021-13842040 | None:intergenic | 40.0% | |
| TTTGCGACAGTTTGAAGACA+AGG | + | chr6_1:13842022-13842041 | None:intergenic | 40.0% | |
| GAGAATGATATTGTGAGAGC+GGG | + | chr6_1:13842165-13842184 | None:intergenic | 40.0% | |
| GGAGAATGATATTGTGAGAG+CGG | + | chr6_1:13842166-13842185 | None:intergenic | 40.0% | |
| GTGAGCCATAATGAGATTGA+AGG | + | chr6_1:13842264-13842283 | None:intergenic | 40.0% | |
| ATTGAGAGTGAGATTGAGGA+TGG | + | chr6_1:13842301-13842320 | None:intergenic | 40.0% | |
| AACGATTGAGAGTGAGATTG+AGG | + | chr6_1:13842305-13842324 | None:intergenic | 40.0% | |
| TCATCGTAGAAGAAGAAAGG+GGG | + | chr6_1:13842342-13842361 | None:intergenic | 40.0% | |
| GTCATCGTAGAAGAAGAAAG+GGG | + | chr6_1:13842343-13842362 | None:intergenic | 40.0% | |
| CGTCATCGTAGAAGAAGAAA+GGG | + | chr6_1:13842344-13842363 | None:intergenic | 40.0% | |
| GTTTAATGGAACCTCGAAGT+GGG | - | chr6_1:13842411-13842430 | Msa0876140:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | + | chr6_1:13842445-13842464 | None:intergenic | 40.0% |
| GGTTTCTTTCCTTTGTTAGC+TGG | - | chr6_1:13843061-13843080 | Msa0876140:CDS | 40.0% | |
| ATACCGAATGTGAAATGGTC+CGG | - | chr6_1:13843085-13843104 | Msa0876140:intron | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | - | chr6_1:13843210-13843229 | Msa0876140:CDS | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | - | chr6_1:13843211-13843230 | Msa0876140:CDS | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | + | chr6_1:13843338-13843357 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | - | chr6_1:13843360-13843379 | Msa0876140:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | - | chr6_1:13843361-13843380 | Msa0876140:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | + | chr6_1:13843367-13843386 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | - | chr6_1:13843367-13843386 | Msa0876140:CDS | 40.0% | |
| TGTCATCAACTTCTTGTGGT+TGG | + | chr6_1:13841597-13841616 | None:intergenic | 40.0% | |
| !! | TTGGTGTCATCAACTTCTTG+TGG | + | chr6_1:13841601-13841620 | None:intergenic | 40.0% |
| TCAGCAATAAGTACTCCTTC+AGG | + | chr6_1:13841682-13841701 | None:intergenic | 40.0% | |
| !! | GAAGGAGTACTTATTGCTGA+TGG | - | chr6_1:13841682-13841701 | Msa0876140:CDS | 40.0% |
| ! | TTTAAGCAACGAAGAGCGTA+AGG | - | chr6_1:13841814-13841833 | Msa0876140:intron | 40.0% |
| CTGCAAAAGAAGATAAGCGA+CGG | + | chr6_1:13841840-13841859 | None:intergenic | 40.0% | |
| AGCACAACCATGAAGTAAGA+CGG | - | chr6_1:13841858-13841877 | Msa0876140:intron | 40.0% | |
| TGGAAGAGAGCAAAACTCAT+AGG | - | chr6_1:13841947-13841966 | Msa0876140:intron | 40.0% | |
| TTGCGACAGTTTGAAGACAA+GGG | + | chr6_1:13842021-13842040 | None:intergenic | 40.0% | |
| TTTGCGACAGTTTGAAGACA+AGG | + | chr6_1:13842022-13842041 | None:intergenic | 40.0% | |
| GAGAATGATATTGTGAGAGC+GGG | + | chr6_1:13842165-13842184 | None:intergenic | 40.0% | |
| GGAGAATGATATTGTGAGAG+CGG | + | chr6_1:13842166-13842185 | None:intergenic | 40.0% | |
| GTGAGCCATAATGAGATTGA+AGG | + | chr6_1:13842264-13842283 | None:intergenic | 40.0% | |
| ATTGAGAGTGAGATTGAGGA+TGG | + | chr6_1:13842301-13842320 | None:intergenic | 40.0% | |
| AACGATTGAGAGTGAGATTG+AGG | + | chr6_1:13842305-13842324 | None:intergenic | 40.0% | |
| TCATCGTAGAAGAAGAAAGG+GGG | + | chr6_1:13842342-13842361 | None:intergenic | 40.0% | |
| GTCATCGTAGAAGAAGAAAG+GGG | + | chr6_1:13842343-13842362 | None:intergenic | 40.0% | |
| CGTCATCGTAGAAGAAGAAA+GGG | + | chr6_1:13842344-13842363 | None:intergenic | 40.0% | |
| GTTTAATGGAACCTCGAAGT+GGG | - | chr6_1:13842411-13842430 | Msa0876140:CDS | 40.0% | |
| ! | TACCAATTTTCCTCCCAAGA+CGG | + | chr6_1:13842445-13842464 | None:intergenic | 40.0% |
| GGTTTCTTTCCTTTGTTAGC+TGG | - | chr6_1:13843061-13843080 | Msa0876140:CDS | 40.0% | |
| ATACCGAATGTGAAATGGTC+CGG | - | chr6_1:13843085-13843104 | Msa0876140:intron | 40.0% | |
| ! | TATGCTTGCTGATCAAATGG+TGG | - | chr6_1:13843210-13843229 | Msa0876140:CDS | 40.0% |
| ! | ATGCTTGCTGATCAAATGGT+GGG | - | chr6_1:13843211-13843230 | Msa0876140:CDS | 40.0% |
| GTCCCGATGTAAAAATGACT+TGG | + | chr6_1:13843338-13843357 | None:intergenic | 40.0% | |
| AAAGCCAGACAATTTCCTCA+TGG | - | chr6_1:13843360-13843379 | Msa0876140:CDS | 40.0% | |
| AAGCCAGACAATTTCCTCAT+GGG | - | chr6_1:13843361-13843380 | Msa0876140:CDS | 40.0% | |
| AAACCCATGAGGAAATTGTC+TGG | + | chr6_1:13843367-13843386 | None:intergenic | 40.0% | |
| GACAATTTCCTCATGGGTTT+AGG | - | chr6_1:13843367-13843386 | Msa0876140:CDS | 40.0% | |
| GTTAATGAGGGTGAACCTGA+AGG | - | chr6_1:13841664-13841683 | Msa0876140:CDS | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | + | chr6_1:13842286-13842305 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | + | chr6_1:13842287-13842306 | None:intergenic | 45.0% | |
| CATCGTAGAAGAAGAAAGGG+GGG | + | chr6_1:13842341-13842360 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+AGG | + | chr6_1:13842345-13842364 | None:intergenic | 45.0% | |
| GGTTTAATGGAACCTCGAAG+TGG | - | chr6_1:13842410-13842429 | Msa0876140:CDS | 45.0% | |
| AGTGGGAATAAGTTCCGTCT+TGG | - | chr6_1:13842428-13842447 | Msa0876140:CDS | 45.0% | |
| GTGGGAATAAGTTCCGTCTT+GGG | - | chr6_1:13842429-13842448 | Msa0876140:CDS | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | - | chr6_1:13842440-13842459 | Msa0876140:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | - | chr6_1:13842446-13842465 | Msa0876140:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | - | chr6_1:13842947-13842966 | Msa0876140:intron | 45.0% | |
| TTCGGTATCCCAGCTAACAA+AGG | + | chr6_1:13843073-13843092 | None:intergenic | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | - | chr6_1:13843080-13843099 | Msa0876140:intron | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | + | chr6_1:13843091-13843110 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | + | chr6_1:13843107-13843126 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | + | chr6_1:13843132-13843151 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | - | chr6_1:13843141-13843160 | Msa0876140:intron | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | - | chr6_1:13843371-13843390 | Msa0876140:CDS | 45.0% | |
| GTTAATGAGGGTGAACCTGA+AGG | - | chr6_1:13841664-13841683 | Msa0876140:CDS | 45.0% | |
| GAGGATGGATGTGAGATTGA+GGG | + | chr6_1:13842286-13842305 | None:intergenic | 45.0% | |
| TGAGGATGGATGTGAGATTG+AGG | + | chr6_1:13842287-13842306 | None:intergenic | 45.0% | |
| CATCGTAGAAGAAGAAAGGG+GGG | + | chr6_1:13842341-13842360 | None:intergenic | 45.0% | |
| GCGTCATCGTAGAAGAAGAA+AGG | + | chr6_1:13842345-13842364 | None:intergenic | 45.0% | |
| GGTTTAATGGAACCTCGAAG+TGG | - | chr6_1:13842410-13842429 | Msa0876140:CDS | 45.0% | |
| AGTGGGAATAAGTTCCGTCT+TGG | - | chr6_1:13842428-13842447 | Msa0876140:CDS | 45.0% | |
| GTGGGAATAAGTTCCGTCTT+GGG | - | chr6_1:13842429-13842448 | Msa0876140:CDS | 45.0% | |
| TTCCGTCTTGGGAGGAAAAT+TGG | - | chr6_1:13842440-13842459 | Msa0876140:CDS | 45.0% | |
| CTTGGGAGGAAAATTGGTAG+CGG | - | chr6_1:13842446-13842465 | Msa0876140:CDS | 45.0% | |
| GTCTGGTAATCACCATAGTC+TGG | - | chr6_1:13842947-13842966 | Msa0876140:intron | 45.0% | |
| TTCGGTATCCCAGCTAACAA+AGG | + | chr6_1:13843073-13843092 | None:intergenic | 45.0% | |
| CTGGGATACCGAATGTGAAA+TGG | - | chr6_1:13843080-13843099 | Msa0876140:intron | 45.0% | |
| ACACCGGACCATTTCACATT+CGG | + | chr6_1:13843091-13843110 | None:intergenic | 45.0% | |
| ATTGTACTCTCCTTCGACAC+CGG | + | chr6_1:13843107-13843126 | None:intergenic | 45.0% | |
| GGCCAAGTAAATCCATCACT+AGG | + | chr6_1:13843132-13843151 | None:intergenic | 45.0% | |
| !! | TTTACTTGGCCCTAGTCTTG+AGG | - | chr6_1:13843141-13843160 | Msa0876140:intron | 45.0% |
| ATTTCCTCATGGGTTTAGGG+AGG | - | chr6_1:13843371-13843390 | Msa0876140:CDS | 45.0% | |
| CAGTTTGAAGACAAGGGTCG+TGG | + | chr6_1:13842015-13842034 | None:intergenic | 50.0% | |
| CCTGTGGCTGTTGAGCTTAA+AGG | + | chr6_1:13842071-13842090 | None:intergenic | 50.0% | |
| CCTTTAAGCTCAACAGCCAC+AGG | - | chr6_1:13842068-13842087 | Msa0876140:intron | 50.0% | |
| !!! | AGGGTTTTGGAGTTGTGGGA+GGG | + | chr6_1:13842187-13842206 | None:intergenic | 50.0% |
| !!! | TAGGGTTTTGGAGTTGTGGG+AGG | + | chr6_1:13842188-13842207 | None:intergenic | 50.0% |
| CGGAACTTATTCCCACTTCG+AGG | + | chr6_1:13842425-13842444 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | - | chr6_1:13842432-13842451 | Msa0876140:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | + | chr6_1:13842962-13842981 | None:intergenic | 50.0% | |
| CAGTTTGAAGACAAGGGTCG+TGG | + | chr6_1:13842015-13842034 | None:intergenic | 50.0% | |
| CCTGTGGCTGTTGAGCTTAA+AGG | + | chr6_1:13842071-13842090 | None:intergenic | 50.0% | |
| CCTTTAAGCTCAACAGCCAC+AGG | - | chr6_1:13842068-13842087 | Msa0876140:intron | 50.0% | |
| !!! | AGGGTTTTGGAGTTGTGGGA+GGG | + | chr6_1:13842187-13842206 | None:intergenic | 50.0% |
| !!! | TAGGGTTTTGGAGTTGTGGG+AGG | + | chr6_1:13842188-13842207 | None:intergenic | 50.0% |
| CGGAACTTATTCCCACTTCG+AGG | + | chr6_1:13842425-13842444 | None:intergenic | 50.0% | |
| GGAATAAGTTCCGTCTTGGG+AGG | - | chr6_1:13842432-13842451 | Msa0876140:CDS | 50.0% | |
| GTTGGGAGCTTACCAGACTA+TGG | + | chr6_1:13842962-13842981 | None:intergenic | 50.0% | |
| AGAAGAAAGGGGGGAGAGTG+AGG | + | chr6_1:13842332-13842351 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | - | chr6_1:13843094-13843113 | Msa0876140:intron | 55.0% |
| AGAAGAAAGGGGGGAGAGTG+AGG | + | chr6_1:13842332-13842351 | None:intergenic | 55.0% | |
| ! | GTGAAATGGTCCGGTGTCGA+AGG | - | chr6_1:13843094-13843113 | Msa0876140:intron | 55.0% |
| CACGCCTCCCTAAACCCATG+AGG | + | chr6_1:13843378-13843397 | None:intergenic | 60.0% | |
| CACGCCTCCCTAAACCCATG+AGG | + | chr6_1:13843378-13843397 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 13841460 | 13843417 | 13841460 | ID=Msa0876140;Name=Msa0876140 |
| chr6_1 | mRNA | 13841460 | 13843417 | 13841460 | ID=Msa0876140-mRNA-1;Parent=Msa0876140;Name=Msa0876140-mRNA-1;_AED=0.50;_eAED=0.51;_QI=0|0.33|0.14|0.71|1|1|7|0|255 |
| chr6_1 | exon | 13843174 | 13843417 | 13843174 | ID=Msa0876140-mRNA-1:exon:4003;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13843006 | 13843085 | 13843006 | ID=Msa0876140-mRNA-1:exon:4002;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13842386 | 13842467 | 13842386 | ID=Msa0876140-mRNA-1:exon:4001;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13842260 | 13842300 | 13842260 | ID=Msa0876140-mRNA-1:exon:4000;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13841963 | 13842026 | 13841963 | ID=Msa0876140-mRNA-1:exon:3999;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13841649 | 13841797 | 13841649 | ID=Msa0876140-mRNA-1:exon:3998;Parent=Msa0876140-mRNA-1 |
| chr6_1 | exon | 13841460 | 13841567 | 13841460 | ID=Msa0876140-mRNA-1:exon:3997;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13843174 | 13843417 | 13843174 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13843006 | 13843085 | 13843006 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13842386 | 13842467 | 13842386 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13842260 | 13842300 | 13842260 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13841963 | 13842026 | 13841963 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13841649 | 13841797 | 13841649 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| chr6_1 | CDS | 13841460 | 13841567 | 13841460 | ID=Msa0876140-mRNA-1:cds;Parent=Msa0876140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
