AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876740 MtrunA17_Chr6g0449861 84.943 352 43 3 286 636 13 355 0.0 600
Msa0876740 MtrunA17_Chr6g0449861 55.747 348 90 6 2 286 9 355 6.55e-113 342
Msa0876740 MtrunA17_Chr6g0449851 83.175 315 23 3 2 286 1 315 0.0 516
Msa0876740 MtrunA17_Chr6g0449851 62.216 352 91 6 286 636 5 315 1.61e-143 419
Msa0876740 MtrunA17_Chr6g0457851 67.042 355 100 4 286 636 15 356 6.38e-162 468
Msa0876740 MtrunA17_Chr6g0457851 55.202 346 94 4 2 286 11 356 2.96e-116 351
Msa0876740 MtrunA17_Chr1g0212151 61.281 359 115 6 286 636 5 347 1.48e-134 397
Msa0876740 MtrunA17_Chr1g0212151 51.685 356 92 8 2 286 1 347 4.90e-103 317
Msa0876740 MtrunA17_Chr4g0059631 35.638 188 110 3 285 469 4 183 7.86e-27 109
Msa0876740 MtrunA17_Chr4g0059631 36.601 153 84 3 2 141 1 153 3.02e-24 102
Msa0876740 MtrunA17_Chr1g0212471 31.429 175 119 1 286 460 5 178 1.60e-26 107
Msa0876740 MtrunA17_Chr1g0212471 35.256 156 86 2 2 142 1 156 7.94e-24 99.4
Msa0876740 MtrunA17_Chr4g0022641 35.359 181 102 4 2 169 1 179 1.86e-25 108
Msa0876740 MtrunA17_Chr4g0022641 35.099 151 95 1 286 436 5 152 4.38e-23 102
Msa0876740 MtrunA17_Chr2g0303981 36.184 152 92 2 286 436 7 154 8.13e-25 102
Msa0876740 MtrunA17_Chr2g0303981 36.000 150 83 3 4 140 5 154 4.86e-22 94.4
Msa0876740 MtrunA17_Chr3g0107351 32.099 162 96 5 285 438 3 158 7.89e-15 72.8
Msa0876740 MtrunA17_Chr3g0107341 34.969 163 90 6 285 438 3 158 1.41e-14 72.0
Msa0876740 MtrunA17_Chr5g0432691 31.288 163 98 5 284 438 3 159 6.84e-14 70.1
Msa0876740 MtrunA17_Chr3g0107361 32.099 162 96 6 285 438 3 158 2.02e-13 68.6
Msa0876740 MtrunA17_Chr1g0197321 34.746 118 68 4 286 403 5 113 5.53e-13 67.0
Msa0876740 MtrunA17_Chr8g0380021 28.859 149 93 3 2 142 17 160 8.89e-13 68.6
Msa0876740 MtrunA17_Chr2g0284911 28.947 152 89 3 2 142 16 159 1.20e-12 68.6
Msa0876740 MtrunA17_Chr2g0283941 32.710 107 65 3 284 389 3 103 1.24e-12 68.2
Msa0876740 MtrunA17_Chr3g0134451 33.333 102 62 2 2 98 1 101 1.64e-12 68.9
Msa0876740 MtrunA17_Chr3g0107381 24.675 231 141 10 286 497 5 221 1.72e-12 67.4
Msa0876740 MtrunA17_Chr3g0107331 34.259 108 64 3 286 392 4 105 1.97e-12 65.9
Msa0876740 MtrunA17_Chr5g0420351 30.645 124 73 3 286 409 5 115 3.60e-12 64.7
Msa0876740 MtrunA17_Chr4g0061691 29.487 156 84 6 2 142 1 145 7.38e-12 65.9
Msa0876740 MtrunA17_Chr5g0425191 47.059 51 27 0 2 52 1 51 9.64e-12 62.0
Msa0876740 MtrunA17_Chr2g0279821 27.545 167 101 5 2 158 1 157 1.16e-11 65.1
Msa0876740 MtrunA17_Chr5g0404951 29.932 147 91 4 2 140 1 143 1.72e-11 64.7
Msa0876740 MtrunA17_Chr4g0014321 37.719 114 56 5 286 398 5 104 4.12e-11 63.5
Msa0876740 MtrunA17_Chr8g0351751 34.314 102 58 4 286 384 5 100 4.51e-11 63.5
Msa0876740 MtrunA17_Chr1g0197261 29.091 165 90 5 286 436 5 156 5.63e-11 61.2
Msa0876740 MtrunA17_Chr3g0110131 26.556 241 140 8 286 497 5 237 6.73e-11 63.2
Msa0876740 MtrunA17_Chr1g0173161 48.980 49 25 0 2 50 1 49 6.75e-11 58.9
Msa0876740 MtrunA17_Chr7g0246381 44.898 49 27 0 2 50 1 49 8.76e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876740 AT5G55690.1 31.679 262 132 10 287 539 6 229 3.67e-22 97.4
Msa0876740 AT5G55690.1 38.710 124 56 2 2 112 1 117 3.24e-16 79.7
Msa0876740 AT5G55690.2 31.679 262 132 10 287 539 6 229 3.67e-22 97.4
Msa0876740 AT5G55690.2 38.710 124 56 2 2 112 1 117 3.24e-16 79.7
Msa0876740 AT5G58890.1 35.211 142 87 3 287 426 6 144 3.61e-17 83.2
Msa0876740 AT3G18650.1 36.296 135 72 5 297 425 31 157 3.05e-13 72.4
Msa0876740 AT3G18650.1 35.200 125 69 4 17 130 31 154 1.54e-11 67.0
Msa0876740 AT1G22590.2 29.936 157 99 4 286 437 5 155 3.31e-13 68.6
Msa0876740 AT4G37940.3 28.477 151 90 3 2 142 1 143 2.92e-12 65.9
Msa0876740 AT2G22630.1 55.102 49 22 0 2 50 1 49 4.93e-12 66.6
Msa0876740 AT2G22630.2 55.102 49 22 0 2 50 1 49 4.93e-12 66.6
Msa0876740 AT4G18960.1 29.139 151 88 4 3 142 18 160 8.99e-12 66.2
Msa0876740 AT4G09960.5 28.289 152 90 4 2 142 11 154 1.02e-11 65.9
Msa0876740 AT4G09960.1 28.289 152 90 4 2 142 1 144 1.14e-11 65.5
Msa0876740 AT4G09960.6 28.289 152 90 4 2 142 2 145 1.18e-11 65.5
Msa0876740 AT5G23260.2 30.612 147 92 3 2 142 1 143 1.23e-11 65.9
Msa0876740 AT3G57390.3 46.667 75 32 2 2 70 1 73 1.61e-11 65.1
Msa0876740 AT3G58780.5 26.316 152 93 3 2 142 22 165 2.41e-11 65.1
Msa0876740 AT5G23260.4 30.612 147 92 3 2 142 17 159 2.43e-11 65.1
Msa0876740 AT5G60910.1 26.797 153 94 3 2 143 1 146 2.54e-11 64.7
Msa0876740 AT3G58780.1 26.316 152 93 3 2 142 16 159 2.73e-11 64.7
Msa0876740 AT3G57390.1 46.667 75 32 2 2 70 1 73 2.82e-11 64.7
Msa0876740 AT3G57230.1 26.490 151 93 6 2 142 1 143 3.12e-11 64.3
Msa0876740 AT3G57230.4 26.490 151 93 6 2 142 1 143 3.12e-11 64.3
Msa0876740 AT4G09960.2 28.000 150 89 4 2 140 1 142 3.44e-11 63.9
Msa0876740 AT4G09960.3 28.289 152 90 4 2 142 27 170 3.75e-11 64.3
Msa0876740 AT4G37940.4 28.188 149 89 3 2 140 1 141 3.76e-11 63.5
Msa0876740 AT1G31640.1 25.786 159 103 5 285 435 3 154 3.84e-11 66.2
Msa0876740 AT3G05860.2 36.986 73 40 2 286 358 5 71 4.20e-11 63.5
Msa0876740 AT3G57230.2 26.846 149 91 6 2 140 1 141 4.27e-11 61.6
Msa0876740 AT3G05860.3 36.986 73 40 2 286 358 5 71 4.29e-11 64.3
Msa0876740 AT4G37940.1 27.815 151 91 3 2 142 1 143 5.05e-11 63.5
Msa0876740 AT3G05860.1 36.986 73 40 2 286 358 5 71 5.67e-11 63.9
Msa0876740 AT2G42830.1 26.316 152 93 3 2 142 16 159 5.76e-11 63.5
Msa0876740 AT2G42830.2 26.316 152 93 3 2 142 16 159 6.68e-11 63.5
Msa0876740 AT5G27960.1 27.742 155 105 3 286 439 3 151 8.84e-11 64.3
Msa0876740 AT1G77950.3 40.278 72 38 1 2 68 1 72 9.12e-11 63.2
Msa0876740 AT1G77950.2 40.278 72 38 1 2 68 1 72 9.12e-11 63.2
Msa0876740 AT1G77950.1 40.278 72 38 1 2 68 1 72 9.12e-11 63.2
Msa0876740 AT1G77950.4 40.278 72 38 1 2 68 1 72 9.12e-11 63.2
Msa0876740 AT5G23260.3 33.333 99 60 1 2 94 1 99 9.57e-11 62.8

Find 116 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTCATACTGATTT+TGG 0.072050 6_1:+15122369 None:intergenic
TCCCATCAATATCTACTTTA+TGG 0.106807 6_1:-15122229 Msa0876740:CDS
ATCTTCCTAGATTTCTCTTT+TGG 0.200818 6_1:+15118545 None:intergenic
GTGTCTTTAGGCCATGTTTC+AGG 0.215568 6_1:+15118401 None:intergenic
TCCCATGAACATCTACTTAA+TGG 0.218158 6_1:-15117594 Msa0876740:CDS
GATGAATCTTACAATTCTTT+TGG 0.252372 6_1:-15122751 Msa0876740:CDS
GTATTTCCATTGTAATAGTA+TGG 0.279464 6_1:+15117684 None:intergenic
TCTTGAACATCATAGGTCTT+AGG 0.310978 6_1:+15122859 None:intergenic
CTTCTACCATGAAGAGTCTA+AGG 0.328249 6_1:-15117841 Msa0876740:CDS
CTCTATGCTCCCACCTTTGA+AGG 0.335130 6_1:-15118440 Msa0876740:CDS
AATATGCTAGAAGGAGATCT+TGG 0.345774 6_1:-15118125 Msa0876740:CDS
CCTTACATGACCTCAAATTC+AGG 0.349045 6_1:-15122613 Msa0876740:CDS
GTAGATGTTCATGGGATGAT+AGG 0.352051 6_1:+15117601 None:intergenic
CAACATATCCTTGGCCTTCA+AGG 0.352632 6_1:+15122962 None:intergenic
AAGCTCTCAACCTTCCCTTA+TGG 0.354140 6_1:-15122479 Msa0876740:intron
GATGAATCTTTCAATTCTCT+TGG 0.359377 6_1:-15118215 Msa0876740:CDS
AAAATATTCTTGAACATCAT+AGG 0.366937 6_1:+15118316 None:intergenic
GAGCTTTGTTCCAATTGAAT+TGG 0.369750 6_1:+15122496 None:intergenic
GGGTCGTGGAAGAATATCTA+TGG 0.373947 6_1:-15123112 Msa0876740:CDS
TTGAAGAGTATTTGTATCAT+AGG 0.374631 6_1:+15117569 None:intergenic
GAGGTTATTTGCTAGGATCT+TGG 0.377459 6_1:-15118180 Msa0876740:CDS
AAAATATTCTTGAACATCAT+AGG 0.387170 6_1:+15122852 None:intergenic
TCATGTAAGGAGAACTAATA+AGG 0.392453 6_1:+15122626 None:intergenic
TACCTGCCTTAGACTCTTCA+TGG 0.403438 6_1:+15117835 None:intergenic
TTGAATACTATCTATATCAT+AGG 0.410651 6_1:+15122204 None:intergenic
TCATTCCAAAAGAGAAATCT+AGG 0.418504 6_1:-15118550 Msa0876740:CDS
TATCCTTGGCCTTCAAGGTT+GGG 0.419769 6_1:+15122967 None:intergenic
GTATTGCAAAAGAGAAAGAT+TGG 0.420157 6_1:-15118521 Msa0876740:CDS
CTGTATGCTCCCAACCTTGA+AGG 0.420817 6_1:-15122976 Msa0876740:CDS
CTAAAGATGAATATGCTAGA+AGG 0.421397 6_1:-15118134 Msa0876740:CDS
CTTGGATTTGAGTCTAAGTA+AGG 0.422502 6_1:+15118050 None:intergenic
AACATCAACATCACAAAGAA+TGG 0.436469 6_1:+15123008 None:intergenic
AAACTTCTCTTTGCGCACTT+TGG 0.438281 6_1:+15118259 None:intergenic
AGGCTACTTCGTTCCATTCG+TGG 0.443877 6_1:+15122165 None:intergenic
GCCACCAATGATCTCAAAAT+CGG 0.446186 6_1:-15117747 Msa0876740:CDS
GAAGTAGTAGGCATAGCAAT+AGG 0.447717 6_1:+15122274 None:intergenic
AGCATCAACATCACAAAGAA+TGG 0.454348 6_1:+15118472 None:intergenic
ACTATGACACAACAATTGAT+AGG 0.455411 6_1:-15122885 Msa0876740:CDS
ATATGCTAGAAGGAGATCTT+GGG 0.456719 6_1:-15118124 Msa0876740:CDS
ATCCATTAAGTAGATGTTCA+TGG 0.457427 6_1:+15117592 None:intergenic
ACTATAACACAACAGTTGAT+AGG 0.461207 6_1:-15118349 Msa0876740:CDS
ATCTATGGAACTCATTCAAA+AGG 0.463531 6_1:-15123097 Msa0876740:CDS
TTTCAGGTTCAGCATACCCT+TGG 0.467005 6_1:+15118417 None:intergenic
ATCCATAAAGTAGATATTGA+TGG 0.467348 6_1:+15122227 None:intergenic
TTAAGATGAAGTATCAAACT+TGG 0.470449 6_1:-15118238 Msa0876740:CDS
TTATCACAAATATTCATCAA+TGG 0.474002 6_1:+15122538 None:intergenic
AGCTCAAATGTTCAACTACA+TGG 0.476126 6_1:-15117547 Msa0876740:CDS
AACAATTGAGGTTATTTGCT+AGG 0.476502 6_1:-15118187 Msa0876740:CDS
AAGCTCTCAACCTTCTCCTA+TGG 0.477911 6_1:-15117880 Msa0876740:CDS
TTTCCATTGTAATAGTATGA+TGG 0.479664 6_1:+15122319 None:intergenic
TTAAAATCAATCTGCTTGCA+AGG 0.480005 6_1:+15117795 None:intergenic
AAGCTCTCAACCCTCTCATA+TGG 0.482453 6_1:-15117916 Msa0876740:CDS
CCTGAATTTGAGGTCATGTA+AGG 0.483276 6_1:+15122613 None:intergenic
TAAGTGGCCAAAACCCTAAA+GGG 0.486281 6_1:+15117949 None:intergenic
TTTCAGGTTCAACATATCCT+TGG 0.488478 6_1:+15122953 None:intergenic
TTATCACTAATATTCATCAA+TGG 0.491553 6_1:+15117975 None:intergenic
ACGAGATTGAAGTAGCTACT+TGG 0.492060 6_1:+15118032 None:intergenic
CTCTTGGAGATGAACAATTG+AGG 0.499688 6_1:-15118199 Msa0876740:CDS
ATATTGTGTTCGTAGACAAT+GGG 0.500458 6_1:-15123132 None:intergenic
ATATCCTTGGCCTTCAAGGT+TGG 0.502086 6_1:+15122966 None:intergenic
GAAGTTGGTACCTGAATTTG+AGG 0.503776 6_1:+15122603 None:intergenic
GATAACATTGCAAAAGAGAA+AGG 0.505631 6_1:-15123061 Msa0876740:CDS
ATGGTAGAAGCTCTGTGCTC+GGG 0.509126 6_1:+15117854 None:intergenic
AGCATACCCTTGGCCTTCAA+AGG 0.510389 6_1:+15118427 None:intergenic
CAAAATCAGTATGAAGAAGA+AGG 0.510960 6_1:-15122368 Msa0876740:CDS
GAGCTTTGACCCGATATAAG+TGG 0.512541 6_1:+15117933 None:intergenic
AAAGTAGATATTGATGGGAT+AGG 0.512721 6_1:+15122233 None:intergenic
TTGCCATCATACTATTACAA+TGG 0.513046 6_1:-15122322 Msa0876740:CDS
TTGTGAACTGGAAACCATAA+GGG 0.517232 6_1:+15122465 None:intergenic
ATAAGTGGCCAAAACCCTAA+AGG 0.517760 6_1:+15117948 None:intergenic
AGATTCTGAAAAGAAGTAGT+AGG 0.518810 6_1:+15122262 None:intergenic
GCTCCCACCTTTGAAGGCCA+AGG 0.521825 6_1:-15118434 Msa0876740:CDS
TGGCATTAGCATCAACATGA+TGG 0.525287 6_1:+15117766 None:intergenic
AGTATGAAGAAGAAGGATGA+AGG 0.528222 6_1:-15122361 Msa0876740:CDS
CATGGTAGAAGCTCTGTGCT+CGG 0.528284 6_1:+15117853 None:intergenic
TTGAATTGGCCAAAACCCTA+AGG 0.530156 6_1:+15122510 None:intergenic
TAAAGATGATGTATCCAACT+TGG 0.530838 6_1:-15122774 Msa0876740:CDS
CTTCAAGGTTGGGAGCATAC+AGG 0.533279 6_1:+15122977 None:intergenic
TTAGCACCATACTATTACAA+TGG 0.536934 6_1:-15117690 Msa0876740:CDS
GGAAGAGTAGGCATAGCAAT+GGG 0.540404 6_1:+15117642 None:intergenic
TCCATAAAGTAGATATTGAT+GGG 0.543780 6_1:+15122228 None:intergenic
CAAATGTTCAACTACATGGA+TGG 0.546493 6_1:-15117543 Msa0876740:CDS
CTCTGTGCTCGGGAAACCAT+AGG 0.549200 6_1:+15117864 None:intergenic
TCCATTAAGTAGATGTTCAT+GGG 0.551523 6_1:+15117593 None:intergenic
TACCATGAAGAGTCTAAGGC+AGG 0.558047 6_1:-15117837 Msa0876740:CDS
TAAGATGAAGTATCAAACTT+GGG 0.559208 6_1:-15118237 Msa0876740:CDS
ATGCATACCAACATGTCTCA+AGG 0.563493 6_1:-15122574 Msa0876740:CDS
TGCAGTTGAAACCATATGAG+AGG 0.566645 6_1:+15117905 None:intergenic
CAATTGTTCAACTCCACGAA+TGG 0.569077 6_1:-15122178 Msa0876740:CDS
TACCCTTGGCCTTCAAAGGT+GGG 0.569378 6_1:+15118431 None:intergenic
ATACCCTTGGCCTTCAAAGG+TGG 0.570213 6_1:+15118430 None:intergenic
GGCATTAGCATCAACATGAT+GGG 0.570214 6_1:+15117767 None:intergenic
GGTATGCATGAGATTGAAGT+TGG 0.570442 6_1:+15122588 None:intergenic
TGTTCAACTACATGGATGGA+AGG 0.573547 6_1:-15117539 Msa0876740:CDS
TGAATTGGCCAAAACCCTAA+GGG 0.580427 6_1:+15122511 None:intergenic
ACATTGCAAAAGAGAAAGGA+TGG 0.582137 6_1:-15123057 Msa0876740:CDS
TTGTAAGATTCATCCCAAGT+TGG 0.584895 6_1:+15122760 None:intergenic
AAAGATGATGTATCCAACTT+GGG 0.588589 6_1:-15122773 Msa0876740:CDS
TGTTCGTAGACAATGGGTCG+TGG 0.595877 6_1:-15123126 None:intergenic
TCACTAATATTCATCAATGG+AGG 0.597003 6_1:+15117978 None:intergenic
GCTCCCAACCTTGAAGGCCA+AGG 0.597883 6_1:-15122970 Msa0876740:CDS
TTTACAAAGTGCGTAAAGAG+AGG 0.599078 6_1:-15122798 Msa0876740:CDS
TAAAATCAATCTGCTTGCAA+GGG 0.599195 6_1:+15117796 None:intergenic
CTCCCACCTTTGAAGGCCAA+GGG 0.600336 6_1:-15118433 Msa0876740:CDS
AGGTGCAAAGAATTCTTCAA+AGG 0.603453 6_1:-15118373 Msa0876740:CDS
TGCATACCAACATGTCTCAA+GGG 0.610432 6_1:-15122573 Msa0876740:CDS
TATGCTAGAAGGAGATCTTG+GGG 0.613088 6_1:-15118123 Msa0876740:CDS
AGGAAGAGTAGGCATAGCAA+TGG 0.623758 6_1:+15117641 None:intergenic
GCTCGGGAAACCATAGGAGA+AGG 0.625390 6_1:+15117870 None:intergenic
ATGGCCTAAAGACACAAAAG+AGG 0.635374 6_1:-15118393 Msa0876740:CDS
GGTATGCTGAACCTGAAACA+TGG 0.639942 6_1:-15118412 Msa0876740:CDS
TGGTTTAATAAAGAAAGCAA+AGG 0.644031 6_1:-15123037 Msa0876740:CDS
GGGTCGTGGAAGAGTATCCG+TGG 0.646636 6_1:-15118576 Msa0876740:intron
GAACTGGAAACCATAAGGGA+AGG 0.661731 6_1:+15122469 None:intergenic
GCAGTTGAAACCATATGAGA+GGG 0.704855 6_1:+15117906 None:intergenic
ATGCTAGAAGGAGATCTTGG+GGG 0.718359 6_1:-15118122 Msa0876740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATGAAAAAATATAAAAAA+TGG + chr6_1:15119440-15119459 None:intergenic 10.0%
!! AATTATTTAGATTAATTTCT+TGG + chr6_1:15119823-15119842 None:intergenic 10.0%
!!! TCACTTTTTTATATAATAAT+CGG - chr6_1:15119854-15119873 Msa0876740:intron 10.0%
!!! TATTTTTTTATTTCCTTTTT+TGG - chr6_1:15120045-15120064 Msa0876740:intron 10.0%
!!! AAATAATATTTTTTTTGACA+AGG + chr6_1:15120981-15121000 None:intergenic 10.0%
!! AAAAAAAACTTATATGTATA+TGG + chr6_1:15121305-15121324 None:intergenic 10.0%
!! CAATAAACTAAACAAATAAA+TGG + chr6_1:15118588-15118607 None:intergenic 15.0%
!!! TATATTCGATTCTTTTTTAA+TGG + chr6_1:15119938-15119957 None:intergenic 15.0%
!! AAAATAATCAATCAAATTGA+AGG + chr6_1:15120031-15120050 None:intergenic 15.0%
!!! TTCATTTTCATTATATATAG+TGG - chr6_1:15120131-15120150 Msa0876740:intron 15.0%
!! AGAAAATAACATATAATTAG+AGG - chr6_1:15120154-15120173 Msa0876740:intron 15.0%
!! AAACAAAAATAAAATTATGC+TGG + chr6_1:15120343-15120362 None:intergenic 15.0%
!!! TTTGTGTATTTCAATAATTT+TGG - chr6_1:15120600-15120619 Msa0876740:intron 15.0%
!!! TTGTGTATTTCAATAATTTT+GGG - chr6_1:15120601-15120620 Msa0876740:intron 15.0%
!! CAAATTAAAAAAATTACGAA+AGG + chr6_1:15120631-15120650 None:intergenic 15.0%
!!! TATATCTACTTTTTATTACA+AGG + chr6_1:15121696-15121715 None:intergenic 15.0%
!! TTGTAATAAAAAGTAGATAT+AGG - chr6_1:15121695-15121714 Msa0876740:intron 15.0%
!!! AATATAGAAGATAGTTTTTT+TGG + chr6_1:15121763-15121782 None:intergenic 15.0%
!! AAAATATTCTTGAACATCAT+AGG + chr6_1:15117801-15117820 None:intergenic 20.0%
!!! TTCAAGAATATTTTAAAGAG+AGG - chr6_1:15117807-15117826 Msa0876740:CDS 20.0%
!! TTATCACAAATATTCATCAA+TGG + chr6_1:15118115-15118134 None:intergenic 20.0%
!! TTGAATACTATCTATATCAT+AGG + chr6_1:15118449-15118468 None:intergenic 20.0%
!! ACAAAGATAATCTTAATCTT+TGG + chr6_1:15118904-15118923 None:intergenic 20.0%
!!! ATCAACTTATTTCTCTATTT+GGG - chr6_1:15119073-15119092 Msa0876740:intron 20.0%
!!! AAAAGAGGTATTAAAAAAAG+AGG + chr6_1:15119223-15119242 None:intergenic 20.0%
!! TTTAGCATTCTTAAAAAAAG+AGG + chr6_1:15119238-15119257 None:intergenic 20.0%
!!! TTTTTTTTTTGTTAACACTC+CGG - chr6_1:15119744-15119763 Msa0876740:intron 20.0%
!! CTAAAAGAAATGAAAATGAA+TGG + chr6_1:15120071-15120090 None:intergenic 20.0%
!! ACATAATTCAATGTAATTAC+AGG + chr6_1:15120800-15120819 None:intergenic 20.0%
!! CAACTTGTAAAAAAAATAGA+GGG + chr6_1:15121245-15121264 None:intergenic 20.0%
!! TAACAATGATTAATCAATGT+CGG - chr6_1:15121381-15121400 Msa0876740:intron 20.0%
!! AAAATATTCTTGAACATCAT+AGG + chr6_1:15117801-15117820 None:intergenic 20.0%
!!! TTCAAGAATATTTTAACGAA+AGG - chr6_1:15122343-15122362 Msa0876740:CDS 20.0%
!! TTATCACTAATATTCATCAA+TGG + chr6_1:15122678-15122697 None:intergenic 20.0%
! TGGTTTAATAAAGAAAGCAA+AGG - chr6_1:15117613-15117632 Msa0876740:CDS 25.0%
!! GATGAATCTTACAATTCTTT+TGG - chr6_1:15117899-15117918 Msa0876740:CDS 25.0%
! AACAATTGAGGTCATTTATT+AGG - chr6_1:15117927-15117946 Msa0876740:CDS 25.0%
! ATTTGTGATAAAAATCCCTT+AGG - chr6_1:15118124-15118143 Msa0876740:CDS 25.0%
! TTTGTGATAAAAATCCCTTA+GGG - chr6_1:15118125-15118144 Msa0876740:CDS 25.0%
!!! TTCTTCTTCATACTGATTTT+GGG + chr6_1:15118283-15118302 None:intergenic 25.0%
! TTTCCATTGTAATAGTATGA+TGG + chr6_1:15118334-15118353 None:intergenic 25.0%
! TCCATAAAGTAGATATTGAT+GGG + chr6_1:15118425-15118444 None:intergenic 25.0%
! ATCCATAAAGTAGATATTGA+TGG + chr6_1:15118426-15118445 None:intergenic 25.0%
! CTTATACTAAAAAGCTAGTA+TGG + chr6_1:15118527-15118546 None:intergenic 25.0%
!!! TTTCTTTTCTTGGTTTTAAG+TGG - chr6_1:15118622-15118641 Msa0876740:intron 25.0%
! TCTATATTAGTACATGCATA+TGG + chr6_1:15118780-15118799 None:intergenic 25.0%
! GATGAAAGATTAATACAAGT+TGG - chr6_1:15118798-15118817 Msa0876740:intron 25.0%
! TATGTCACAGAACAAATATT+CGG - chr6_1:15118925-15118944 Msa0876740:intron 25.0%
!! CATCAACTTATTTCTCTATT+TGG - chr6_1:15119072-15119091 Msa0876740:intron 25.0%
!!! AAGTTTAACCTTTTGAAAGT+CGG + chr6_1:15119270-15119289 None:intergenic 25.0%
! AGACTTTGTCAAAAAGTTTA+AGG + chr6_1:15119335-15119354 None:intergenic 25.0%
!!! TTTTAGAAGTTTTCTTTCGT+TGG - chr6_1:15119529-15119548 Msa0876740:intron 25.0%
! AACTTTACATATCGAAACTT+TGG + chr6_1:15119796-15119815 None:intergenic 25.0%
! AAGTTTCGATATGTAAAGTT+TGG - chr6_1:15119796-15119815 Msa0876740:intron 25.0%
!!! ATCGATTTTTATGGTAACAA+TGG + chr6_1:15119910-15119929 None:intergenic 25.0%
!!! ATGGATTCAATCGATTTTTA+TGG + chr6_1:15119919-15119938 None:intergenic 25.0%
! ATAATCAATCAAATTGAAGG+TGG + chr6_1:15120028-15120047 None:intergenic 25.0%
! TGAAAATGAATCTCTCAAAA+AGG + chr6_1:15120121-15120140 None:intergenic 25.0%
! GTAAGATTTCTTTCATAGTT+AGG - chr6_1:15120431-15120450 Msa0876740:intron 25.0%
! CATAGTTAGGATTAAATACT+AGG - chr6_1:15120444-15120463 Msa0876740:intron 25.0%
!!! TAAGAAGTATTCGTGTTTTA+TGG + chr6_1:15120724-15120743 None:intergenic 25.0%
! ACACGAATACTTCTTAAATT+AGG - chr6_1:15120728-15120747 Msa0876740:intron 25.0%
! CACGAATACTTCTTAAATTA+GGG - chr6_1:15120729-15120748 Msa0876740:intron 25.0%
!! TTAATTTTACCTATGAAGCA+TGG + chr6_1:15120906-15120925 None:intergenic 25.0%
! GCAACTTGTAAAAAAAATAG+AGG + chr6_1:15121246-15121265 None:intergenic 25.0%
! ATACCAAATATATCATACCA+TGG - chr6_1:15122016-15122035 Msa0876740:intron 25.0%
! ATACCATGGTATGATATATT+TGG + chr6_1:15122022-15122041 None:intergenic 25.0%
!! TTAAGATGAAGTATCAAACT+TGG - chr6_1:15122412-15122431 Msa0876740:intron 25.0%
!! TAAGATGAAGTATCAAACTT+GGG - chr6_1:15122413-15122432 Msa0876740:intron 25.0%
! ATTAGTGATAAAAACCCTTT+AGG - chr6_1:15122687-15122706 Msa0876740:CDS 25.0%
! TTAGTGATAAAAACCCTTTA+GGG - chr6_1:15122688-15122707 Msa0876740:CDS 25.0%
! GTATTTCCATTGTAATAGTA+TGG + chr6_1:15122969-15122988 None:intergenic 25.0%
!!! AGGTTTGAAAGATTTTGAAA+AGG + chr6_1:15123032-15123051 None:intergenic 25.0%
!!! TTGAAGAGTATTTGTATCAT+AGG + chr6_1:15123084-15123103 None:intergenic 25.0%
ATCTATGGAACTCATTCAAA+AGG - chr6_1:15117553-15117572 Msa0876740:CDS 30.0%
GATAACATTGCAAAAGAGAA+AGG - chr6_1:15117589-15117608 Msa0876740:CDS 30.0%
AACATCAACATCACAAAGAA+TGG + chr6_1:15117645-15117664 None:intergenic 30.0%
ACTATGACACAACAATTGAT+AGG - chr6_1:15117765-15117784 Msa0876740:CDS 30.0%
TAAAGATGATGTATCCAACT+TGG - chr6_1:15117876-15117895 Msa0876740:CDS 30.0%
AAAGATGATGTATCCAACTT+GGG - chr6_1:15117877-15117896 Msa0876740:CDS 30.0%
! CTTTTGGATATGAACAATTG+AGG - chr6_1:15117915-15117934 Msa0876740:CDS 30.0%
! GAGGTCATTTATTAGGTTTT+TGG - chr6_1:15117934-15117953 Msa0876740:CDS 30.0%
TCATGTAAGGAGAACTAATA+AGG + chr6_1:15118027-15118046 None:intergenic 30.0%
! ATAAAAATCCCTTAGGGTTT+TGG - chr6_1:15118131-15118150 Msa0876740:CDS 30.0%
AACATTAGCATTAACCTGAT+GGG + chr6_1:15118251-15118270 None:intergenic 30.0%
TAACATTAGCATTAACCTGA+TGG + chr6_1:15118252-15118271 None:intergenic 30.0%
!!! CTTCTTCTTCATACTGATTT+TGG + chr6_1:15118284-15118303 None:intergenic 30.0%
CAAAATCAGTATGAAGAAGA+AGG - chr6_1:15118282-15118301 Msa0876740:CDS 30.0%
TTGCCATCATACTATTACAA+TGG - chr6_1:15118328-15118347 Msa0876740:CDS 30.0%
! AGATTCTGAAAAGAAGTAGT+AGG + chr6_1:15118391-15118410 None:intergenic 30.0%
AAAGTAGATATTGATGGGAT+AGG + chr6_1:15118420-15118439 None:intergenic 30.0%
TCCCATCAATATCTACTTTA+TGG - chr6_1:15118421-15118440 Msa0876740:CDS 30.0%
! AGTATGACGATTTCTTTTCT+TGG - chr6_1:15118612-15118631 Msa0876740:intron 30.0%
TTTAAGTGGAACATATAGCT+TGG - chr6_1:15118636-15118655 Msa0876740:intron 30.0%
!! GTGTGTGAGTTTAATTTTAG+TGG - chr6_1:15118859-15118878 Msa0876740:intron 30.0%
TAACTAGACACAATGTCATA+TGG - chr6_1:15119041-15119060 Msa0876740:intron 30.0%
CATCTACGTTATTATAGTTC+TGG - chr6_1:15119165-15119184 Msa0876740:intron 30.0%
!! AGTTTAACCTTTTGAAAGTC+GGG + chr6_1:15119269-15119288 None:intergenic 30.0%
! TACAGCTTTGATTCCAATTA+GGG + chr6_1:15119401-15119420 None:intergenic 30.0%
! TTACAGCTTTGATTCCAATT+AGG + chr6_1:15119402-15119421 None:intergenic 30.0%
TGAAAATGAATGGCCAAAAA+AGG + chr6_1:15120061-15120080 None:intergenic 30.0%
GAAGAAGAAGAAGAAAAACA+AGG - chr6_1:15120290-15120309 Msa0876740:intron 30.0%
! GTTTTGTAAAATCATCGAGA+TGG - chr6_1:15120409-15120428 Msa0876740:intron 30.0%
AGGATTAAATACTAGGTACA+AGG - chr6_1:15120451-15120470 Msa0876740:intron 30.0%
GTACAAGGTGATTAAATACT+AGG - chr6_1:15120466-15120485 Msa0876740:intron 30.0%
GTGATTAAATACTAGGTTCA+AGG - chr6_1:15120473-15120492 Msa0876740:intron 30.0%
GAGATTATGCATTTCATTGA+TGG + chr6_1:15120514-15120533 None:intergenic 30.0%
! TTGCAAAAATAGCTTTTGAG+AGG - chr6_1:15120651-15120670 Msa0876740:intron 30.0%
! TAAAAGCTCGACTTCTTTTT+CGG + chr6_1:15121279-15121298 None:intergenic 30.0%
! TCTTTTTGTCAGCATCATAA+TGG - chr6_1:15121329-15121348 Msa0876740:intron 30.0%
!!! GAAGTTTTTTCATATGCAAG+AGG - chr6_1:15121446-15121465 Msa0876740:intron 30.0%
TGGATTTGAACAAGTAGTAA+GGG + chr6_1:15121513-15121532 None:intergenic 30.0%
ATGGATTTGAACAAGTAGTA+AGG + chr6_1:15121514-15121533 None:intergenic 30.0%
TCTCTGCATCTAACAAATAA+TGG + chr6_1:15121533-15121552 None:intergenic 30.0%
GTACAGTCTAATATTGAGTT+AGG + chr6_1:15121580-15121599 None:intergenic 30.0%
TGAATGTACACAAAATCAAG+TGG + chr6_1:15121835-15121854 None:intergenic 30.0%
ATAATCATGTGTTCATACCA+TGG + chr6_1:15122036-15122055 None:intergenic 30.0%
TCATTCCAAAAGAGAAATCT+AGG - chr6_1:15122100-15122119 Msa0876740:intron 30.0%
! ATCTTCCTAGATTTCTCTTT+TGG + chr6_1:15122108-15122127 None:intergenic 30.0%
GTATTGCAAAAGAGAAAGAT+TGG - chr6_1:15122129-15122148 Msa0876740:intron 30.0%
TGGTTTGATGAAAAAAGTTG+AGG - chr6_1:15122149-15122168 Msa0876740:intron 30.0%
ACTATAACACAACAGTTGAT+AGG - chr6_1:15122301-15122320 Msa0876740:CDS 30.0%
GATGAATCTTTCAATTCTCT+TGG - chr6_1:15122435-15122454 Msa0876740:intron 30.0%
AACAATTGAGGTTATTTGCT+AGG - chr6_1:15122463-15122482 Msa0876740:intron 30.0%
TCACTAATATTCATCAATGG+AGG + chr6_1:15122675-15122694 None:intergenic 30.0%
!!! ATAAAAACCCTTTAGGGTTT+TGG - chr6_1:15122694-15122713 Msa0876740:CDS 30.0%
TAAAATCAATCTGCTTGCAA+GGG + chr6_1:15122857-15122876 None:intergenic 30.0%
TTAAAATCAATCTGCTTGCA+AGG + chr6_1:15122858-15122877 None:intergenic 30.0%
!! GCAAGCAGATTGATTTTAAT+TGG - chr6_1:15122859-15122878 Msa0876740:CDS 30.0%
TTAGCACCATACTATTACAA+TGG - chr6_1:15122960-15122979 Msa0876740:intron 30.0%
!! AGATTTTGAAAAGGAAGAGT+AGG + chr6_1:15123023-15123042 None:intergenic 30.0%
TCCATTAAGTAGATGTTCAT+GGG + chr6_1:15123060-15123079 None:intergenic 30.0%
ATCCATTAAGTAGATGTTCA+TGG + chr6_1:15123061-15123080 None:intergenic 30.0%
ACATTGCAAAAGAGAAAGGA+TGG - chr6_1:15117593-15117612 Msa0876740:CDS 35.0%
!! TTTCAGGTTCAACATATCCT+TGG + chr6_1:15117700-15117719 None:intergenic 35.0%
GATATGTTGAACCTGAAACA+TGG - chr6_1:15117702-15117721 Msa0876740:CDS 35.0%
! TGTACCTCTCTTTTGTCTTT+AGG + chr6_1:15117728-15117747 None:intergenic 35.0%
TCTTGAACATCATAGGTCTT+AGG + chr6_1:15117794-15117813 None:intergenic 35.0%
TTTACAAAGTGCGTAAAGAG+AGG - chr6_1:15117852-15117871 Msa0876740:CDS 35.0%
TTGTAAGATTCATCCCAAGT+TGG + chr6_1:15117893-15117912 None:intergenic 35.0%
GCGAAAAAATGAATCACACA+AGG - chr6_1:15117994-15118013 Msa0876740:CDS 35.0%
! AATTTTCCCTTGAGACATGT+TGG + chr6_1:15118086-15118105 None:intergenic 35.0%
!! GAGCTTTGTTCCAATTGAAT+TGG + chr6_1:15118157-15118176 None:intergenic 35.0%
TTGTGAACTGGAAACCATAA+GGG + chr6_1:15118188-15118207 None:intergenic 35.0%
TTTGTGAACTGGAAACCATA+AGG + chr6_1:15118189-15118208 None:intergenic 35.0%
AATATGCTTGCAAGGGTAAT+AGG + chr6_1:15118215-15118234 None:intergenic 35.0%
TAGCATCAATATGCTTGCAA+GGG + chr6_1:15118222-15118241 None:intergenic 35.0%
TTAGCATCAATATGCTTGCA+AGG + chr6_1:15118223-15118242 None:intergenic 35.0%
AGTATGAAGAAGAAGGATGA+AGG - chr6_1:15118289-15118308 Msa0876740:CDS 35.0%
! ATGGATGTCTAAAGCATTAC+AGG + chr6_1:15118508-15118527 None:intergenic 35.0%
AGTACATGCATATGGCAAAA+GGG + chr6_1:15118772-15118791 None:intergenic 35.0%
TAGTACATGCATATGGCAAA+AGG + chr6_1:15118773-15118792 None:intergenic 35.0%
TTGTGATACAGATTCGAACT+CGG - chr6_1:15118824-15118843 Msa0876740:intron 35.0%
AGTTATACCCGACTTTCAAA+AGG - chr6_1:15119259-15119278 Msa0876740:intron 35.0%
! AACCTATTTTCACCCCTAAT+TGG - chr6_1:15119385-15119404 Msa0876740:intron 35.0%
TTCCAATTAGGGGTGAAAAT+AGG + chr6_1:15119390-15119409 None:intergenic 35.0%
! ACAGCTTTGATTCCAATTAG+GGG + chr6_1:15119400-15119419 None:intergenic 35.0%
TTGAGTGTTCATACTATCTG+AGG - chr6_1:15120542-15120561 Msa0876740:intron 35.0%
! TATCTGAGGCTTTGATTTAG+AGG - chr6_1:15120556-15120575 Msa0876740:intron 35.0%
CTGCTTAGACAATAGAAAGA+TGG + chr6_1:15120701-15120720 None:intergenic 35.0%
! CTTCTTAAATTAGGGTGTCT+CGG - chr6_1:15120737-15120756 Msa0876740:intron 35.0%
ATGGATATAGACACGAACAT+CGG + chr6_1:15120887-15120906 None:intergenic 35.0%
TGTCTATATCCATGCTTCAT+AGG - chr6_1:15120894-15120913 Msa0876740:intron 35.0%
AACTCCTAACCACTTGTTTA+AGG - chr6_1:15121478-15121497 Msa0876740:intron 35.0%
ACTCCTAACCACTTGTTTAA+GGG - chr6_1:15121479-15121498 Msa0876740:intron 35.0%
TAGAGTTGTCAAGTTCTCAA+AGG + chr6_1:15121602-15121621 None:intergenic 35.0%
TATATTGTGTTCGCAGCAAA+TGG - chr6_1:15122053-15122072 Msa0876740:intron 35.0%
ATATTGTGTTCGCAGCAAAT+GGG - chr6_1:15122054-15122073 Msa0876740:intron 35.0%
!!! CTCTTTTGGAATGAATTCCA+CGG + chr6_1:15122094-15122113 None:intergenic 35.0%
AGCATCAACATCACAAAGAA+TGG + chr6_1:15122181-15122200 None:intergenic 35.0%
AGGTGCAAAGAATTCTTCAA+AGG - chr6_1:15122277-15122296 Msa0876740:CDS 35.0%
CTTGGATTTGAGTCTAAGTA+AGG + chr6_1:15122603-15122622 None:intergenic 35.0%
!!! CATACCGATTTTGAGATCAT+TGG + chr6_1:15122910-15122929 None:intergenic 35.0%
TCCCATGAACATCTACTTAA+TGG - chr6_1:15123056-15123075 Msa0876740:CDS 35.0%
AGCTCAAATGTTCAACTACA+TGG - chr6_1:15123103-15123122 Msa0876740:CDS 35.0%
CAAATGTTCAACTACATGGA+TGG - chr6_1:15123107-15123126 Msa0876740:CDS 35.0%
TTGTCTTTAGGCCATGTTTC+AGG + chr6_1:15117716-15117735 None:intergenic 40.0%
ATGGCCTAAAGACAAAAGAG+AGG - chr6_1:15117721-15117740 Msa0876740:CDS 40.0%
! CCTGAATTTGAGGTCATGTA+AGG + chr6_1:15118040-15118059 None:intergenic 40.0%
CCTTACATGACCTCAAATTC+AGG - chr6_1:15118037-15118056 Msa0876740:CDS 40.0%
!! GAAGTTGGTACCTGAATTTG+AGG + chr6_1:15118050-15118069 None:intergenic 40.0%
GGTATGCATGAGATTGAAGT+TGG + chr6_1:15118065-15118084 None:intergenic 40.0%
ATGCATACCAACATGTCTCA+AGG - chr6_1:15118076-15118095 Msa0876740:CDS 40.0%
TGCATACCAACATGTCTCAA+GGG - chr6_1:15118077-15118096 Msa0876740:CDS 40.0%
TGAATTGGCCAAAACCCTAA+GGG + chr6_1:15118142-15118161 None:intergenic 40.0%
TTGAATTGGCCAAAACCCTA+AGG + chr6_1:15118143-15118162 None:intergenic 40.0%
!! AGGGTTTTGGCCAATTCAAT+TGG - chr6_1:15118144-15118163 Msa0876740:CDS 40.0%
! GTAATAGGAGCTTTGTGAAC+TGG + chr6_1:15118200-15118219 None:intergenic 40.0%
GCAAGCATATTGATGCTAAC+TGG - chr6_1:15118224-15118243 Msa0876740:CDS 40.0%
GAAGTAGTAGGCATAGCAAT+AGG + chr6_1:15118379-15118398 None:intergenic 40.0%
CAATTGTTCAACTCCACGAA+TGG - chr6_1:15118472-15118491 Msa0876740:CDS 40.0%
GTACATGCATATGGCAAAAG+GGG + chr6_1:15118771-15118790 None:intergenic 40.0%
TGTGATACAGATTCGAACTC+GGG - chr6_1:15118825-15118844 Msa0876740:intron 40.0%
TAAACTCACACACAACTGTG+AGG + chr6_1:15118852-15118871 None:intergenic 40.0%
TATCTTGTCAGTATCTGCGT+TGG + chr6_1:15120777-15120796 None:intergenic 40.0%
CTCCTAACCACTTGTTTAAG+GGG - chr6_1:15121480-15121499 Msa0876740:intron 40.0%
AACCCCTTAAACAAGTGGTT+AGG + chr6_1:15121485-15121504 None:intergenic 40.0%
AGTTCAACCCCTTAAACAAG+TGG + chr6_1:15121490-15121509 None:intergenic 40.0%
GAGCATGCAAGACAAATGAA+AGG + chr6_1:15121879-15121898 None:intergenic 40.0%
ATGGCCTAAAGACACAAAAG+AGG - chr6_1:15122257-15122276 Msa0876740:CDS 40.0%
! TGCACCTCTTTTGTGTCTTT+AGG + chr6_1:15122264-15122283 None:intergenic 40.0%
AAACTTCTCTTTGCGCACTT+TGG + chr6_1:15122394-15122413 None:intergenic 40.0%
CTCTTGGAGATGAACAATTG+AGG - chr6_1:15122451-15122470 Msa0876740:intron 40.0%
! GAGGTTATTTGCTAGGATCT+TGG - chr6_1:15122470-15122489 Msa0876740:intron 40.0%
ACGAGATTGAAGTAGCTACT+TGG + chr6_1:15122621-15122640 None:intergenic 40.0%
TAAGTGGCCAAAACCCTAAA+GGG + chr6_1:15122704-15122723 None:intergenic 40.0%
ATAAGTGGCCAAAACCCTAA+AGG + chr6_1:15122705-15122724 None:intergenic 40.0%
!! AGGGTTTTGGCCACTTATAT+CGG - chr6_1:15122707-15122726 Msa0876740:intron 40.0%
GCAGTTGAAACCATATGAGA+GGG + chr6_1:15122747-15122766 None:intergenic 40.0%
TGCAGTTGAAACCATATGAG+AGG + chr6_1:15122748-15122767 None:intergenic 40.0%
CTTCTACCATGAAGAGTCTA+AGG - chr6_1:15122809-15122828 Msa0876740:CDS 40.0%
GGCATTAGCATCAACATGAT+GGG + chr6_1:15122886-15122905 None:intergenic 40.0%
TGGCATTAGCATCAACATGA+TGG + chr6_1:15122887-15122906 None:intergenic 40.0%
GCCACCAATGATCTCAAAAT+CGG - chr6_1:15122903-15122922 Msa0876740:CDS 40.0%
!!! ACCGATTTTGAGATCATTGG+TGG + chr6_1:15122907-15122926 None:intergenic 40.0%
GTAGATGTTCATGGGATGAT+AGG + chr6_1:15123052-15123071 None:intergenic 40.0%
TGTTCAACTACATGGATGGA+AGG - chr6_1:15123111-15123130 Msa0876740:CDS 40.0%
GGGTCGTGGAAGAATATCTA+TGG - chr6_1:15117538-15117557 Msa0876740:CDS 45.0%
! TATCCTTGGCCTTCAAGGTT+GGG + chr6_1:15117686-15117705 None:intergenic 45.0%
! ATATCCTTGGCCTTCAAGGT+TGG + chr6_1:15117687-15117706 None:intergenic 45.0%
! CAACATATCCTTGGCCTTCA+AGG + chr6_1:15117691-15117710 None:intergenic 45.0%
AAGCTCTCAACCTTCCCTTA+TGG - chr6_1:15118171-15118190 Msa0876740:CDS 45.0%
GAACTGGAAACCATAAGGGA+AGG + chr6_1:15118184-15118203 None:intergenic 45.0%
CAGTCCATTTCTCTTGAGAC+CGG + chr6_1:15119766-15119785 None:intergenic 45.0%
!! TTTCAGGTTCAGCATACCCT+TGG + chr6_1:15122236-15122255 None:intergenic 45.0%
GGTATGCTGAACCTGAAACA+TGG - chr6_1:15122238-15122257 Msa0876740:CDS 45.0%
GTGTCTTTAGGCCATGTTTC+AGG + chr6_1:15122252-15122271 None:intergenic 45.0%
!! GGGTTTTGGCCACTTATATC+GGG - chr6_1:15122708-15122727 Msa0876740:intron 45.0%
! GAGCTTTGACCCGATATAAG+TGG + chr6_1:15122720-15122739 None:intergenic 45.0%
AAGCTCTCAACCCTCTCATA+TGG - chr6_1:15122734-15122753 Msa0876740:intron 45.0%
AAGCTCTCAACCTTCTCCTA+TGG - chr6_1:15122770-15122789 Msa0876740:CDS 45.0%
! TACCATGAAGAGTCTAAGGC+AGG - chr6_1:15122813-15122832 Msa0876740:CDS 45.0%
TACCTGCCTTAGACTCTTCA+TGG + chr6_1:15122818-15122837 None:intergenic 45.0%
GGAAGAGTAGGCATAGCAAT+GGG + chr6_1:15123011-15123030 None:intergenic 45.0%
AGGAAGAGTAGGCATAGCAA+TGG + chr6_1:15123012-15123031 None:intergenic 45.0%
!!! TATTTTGTAAAATTAATTTA+CGG - chr6_1:15120996-15121015 Msa0876740:intron 5.0%
!! GTAATTAAAAATTAAATAAA+AGG + chr6_1:15121949-15121968 None:intergenic 5.0%
! CTTCAAGGTTGGGAGCATAC+AGG + chr6_1:15117676-15117695 None:intergenic 50.0%
CTGTATGCTCCCAACCTTGA+AGG - chr6_1:15117674-15117693 Msa0876740:CDS 50.0%
TGATGCTAACTGGACCCATC+AGG - chr6_1:15118234-15118253 Msa0876740:CDS 50.0%
AGGCTACTTCGTTCCATTCG+TGG + chr6_1:15118488-15118507 None:intergenic 50.0%
TCAGACTCTCTCTCTCTCTG+TGG + chr6_1:15119566-15119585 None:intergenic 50.0%
CACTCCGGTCTCAAGAGAAA+TGG - chr6_1:15119759-15119778 Msa0876740:intron 50.0%
TAGAGGAGAGACACAGTGTG+TGG - chr6_1:15120171-15120190 Msa0876740:intron 50.0%
AGAGGAGAGACACAGTGTGT+GGG - chr6_1:15120172-15120191 Msa0876740:intron 50.0%
CTCTATGCTCCCACCTTTGA+AGG - chr6_1:15122210-15122229 Msa0876740:CDS 50.0%
! TACCCTTGGCCTTCAAAGGT+GGG + chr6_1:15122222-15122241 None:intergenic 50.0%
! ATACCCTTGGCCTTCAAAGG+TGG + chr6_1:15122223-15122242 None:intergenic 50.0%
! AGCATACCCTTGGCCTTCAA+AGG + chr6_1:15122226-15122245 None:intergenic 50.0%
ATGGTAGAAGCTCTGTGCTC+GGG + chr6_1:15122799-15122818 None:intergenic 50.0%
CATGGTAGAAGCTCTGTGCT+CGG + chr6_1:15122800-15122819 None:intergenic 50.0%
TGTTCGCAGCAAATGGGTCG+TGG - chr6_1:15122060-15122079 Msa0876740:intron 55.0%
! CTCCCACCTTTGAAGGCCAA+GGG - chr6_1:15122217-15122236 Msa0876740:CDS 55.0%
GCTCGGGAAACCATAGGAGA+AGG + chr6_1:15122783-15122802 None:intergenic 55.0%
CTCTGTGCTCGGGAAACCAT+AGG + chr6_1:15122789-15122808 None:intergenic 55.0%
GCTCCCAACCTTGAAGGCCA+AGG - chr6_1:15117680-15117699 Msa0876740:CDS 60.0%
GGAGAGACACAGTGTGTGGG+AGG - chr6_1:15120175-15120194 Msa0876740:intron 60.0%
!! GGGTCGTGGAAGAGTATCCG+TGG - chr6_1:15122074-15122093 Msa0876740:intron 60.0%
! GCTCCCACCTTTGAAGGCCA+AGG - chr6_1:15122216-15122235 Msa0876740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 15117533 15123139 15117533 ID=Msa0876740;Name=Msa0876740
chr6_1 mRNA 15117533 15123139 15117533 ID=Msa0876740-mRNA-1;Parent=Msa0876740;Name=Msa0876740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|5|0|636
chr6_1 exon 15122966 15123139 15122966 ID=Msa0876740-mRNA-1:exon:4396;Parent=Msa0876740-mRNA-1
chr6_1 exon 15122736 15122929 15122736 ID=Msa0876740-mRNA-1:exon:4395;Parent=Msa0876740-mRNA-1
chr6_1 exon 15122480 15122723 15122480 ID=Msa0876740-mRNA-1:exon:4394;Parent=Msa0876740-mRNA-1
chr6_1 exon 15122172 15122416 15122172 ID=Msa0876740-mRNA-1:exon:4393;Parent=Msa0876740-mRNA-1
chr6_1 exon 15117533 15118586 15117533 ID=Msa0876740-mRNA-1:exon:4392;Parent=Msa0876740-mRNA-1
chr6_1 CDS 15122966 15123139 15122966 ID=Msa0876740-mRNA-1:cds;Parent=Msa0876740-mRNA-1
chr6_1 CDS 15122736 15122929 15122736 ID=Msa0876740-mRNA-1:cds;Parent=Msa0876740-mRNA-1
chr6_1 CDS 15122480 15122723 15122480 ID=Msa0876740-mRNA-1:cds;Parent=Msa0876740-mRNA-1
chr6_1 CDS 15122172 15122416 15122172 ID=Msa0876740-mRNA-1:cds;Parent=Msa0876740-mRNA-1
chr6_1 CDS 15117533 15118586 15117533 ID=Msa0876740-mRNA-1:cds;Parent=Msa0876740-mRNA-1
Gene Sequence

>Msa0876740

ACAATGGGTCGTGGAAGAATATCTATGGAACTCATTCAAAAGGAGAGATCTAGAAAGATAACATTGCAAAAGAGAAAGGATGGTTTAATAAAGAAAGCAAAGGAATTTTCCATTCTTTGTGATGTTGATGTTTGTTTGATCCTGTATGCTCCCAACCTTGAAGGCCAAGGATATGTACAAAGAATTCTTCAAAATTACTATGACACAACAATTGATAGGCGTCCTAAGACCTATGATGTTCAAGAATATTTTAAAGAGAGGATGAAAAAAGTTGAATTAGAGATTTACAAAGTGCGTAAAGAGAGGTTAAAGATGATGTATCCAACTTGGGATGAATCTTACAATTCTTTTGGATATGAACAATTGAGGTTTTTGGATTCTAAGCTTGACGCATGTGATCAAAAAATGAATATGCGAAAAAATGAATCACACAAGGTCAATAACCTTATTAGTTCTCCTTACATGACCTCAAATTCAGGTACCAACTTCAATCTCATGCATACCAACATGTCTCAAGGGAAAATTTACTCTCCATTGATGAATATTTGTGATAAAAATCCCTTAGGGTTTTGGCCAATTCAATTGGAACAAAGCTCTCAACCTTCCCTTATGGTTAATGCTAATGTTATGTATGATCCCAAAATCAGTATGAAGAAGAAGGATGAAGGTGAAAATGATAAAAACTTGCCATCATACTATTACAATGGAAATGCAATGATAATGCAATCAAATCCTATTGCTATGCCTACTACTTCTTTTCAGAATCTTGCAAACCTATCCCATCAATATCTACTTTATGGATCCTATGATATAGATAGTATTCAAGCTCAATTGTTCAACTCCACGAATGGAACGAAAGTATCCGTGGAATTCATTCCAAAAGAGAAATCTAGGAAGATAGTATTGCAAAAGAGAAAGATTGGTTTGATGAAAAAAGTTGAGGAACTTTCCATTCTTTGTGATGTTGATGCTTGTGTGATTCTCTATGCTCCCACCTTTGAAGGCCAAGGGTATGCTGAACCTGAAACATGGCCTAAAGACACAAAAGAGGTGCAAAGAATTCTTCAAAGGTACTATAACACAACAGTTGATAGGCGTCTTAAGACCTATGATGTTCAAGAATATTTTAACGAAAGGATGAAAAAAGTTGAATTTGAGATTTCCAAAGTGCGCAAAGAGAAGTTTAAGATGAAGTATCAAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAACAATTGAGGTTATTTGCTAGGATCTTGGATTCTAAGCTTGATGCATGCAATCTAAAGATGAATATGCTAGAAGGAGATCTTGGGGGAAAATCAATAGCTCTTGAGACAAACAAGATTGATAATCTTAATAGTTCTCCTTACTTAGACTCAAATCCAAGTAGCTACTTCAATCTCGTGCAAAACAACATGTCTCAAGCACACATTTATCCTCCATTGATGAATATTAGTGATAAAAACCCTTTAGGGTTTTGGCCACTTATATCGGGTCAAAGCTCTCAACCCTCTCATATGGTTTCAACTGCACAAAGCTCTCAACCTTCTCCTATGGTTTCCCGAGCACAGAGCTTCTACCATGAAGAGTCTAAGGCAGGTATATATGCACAATCTTACCCTTGCAAGCAGATTGATTTTAATTGGACCCATCATGTTGATGCTAATGCCACCAATGATCTCAAAATCGGTATGAAGAATGATGAAGTTGAAAATGATAAAAACTTAGCACCATACTATTACAATGGAAATACAATGACAATGCAATCATATCCCATTGCTATGCCTACTCTTCCTTTTCAAAATCTTTCAAACCTATCATCCCATGAACATCTACTTAATGGATCCTATGATACAAATACTCTTCAAGCTCAAATGTTCAACTACATGGATGGAAGGAAGTAG
Protein sequence

>Msa0876740

TMGRGRISMELIQKERSRKITLQKRKDGLIKKAKEFSILCDVDVCLILYAPNLEGQGYVQRILQNYYDTTIDRRPKTYDVQEYFKERMKKVELEIYKVRKERLKMMYPTWDESYNSFGYEQLRFLDSKLDACDQKMNMRKNESHKVNNLISSPYMTSNSGTNFNLMHTNMSQGKIYSPLMNICDKNPLGFWPIQLEQSSQPSLMVNANVMYDPKISMKKKDEGENDKNLPSYYYNGNAMIMQSNPIAMPTTSFQNLANLSHQYLLYGSYDIDSIQAQLFNSTNGTKVSVEFIPKEKSRKIVLQKRKIGLMKKVEELSILCDVDACVILYAPTFEGQGYAEPETWPKDTKEVQRILQRYYNTTVDRRLKTYDVQEYFNERMKKVEFEISKVRKEKFKMKYQTWDESFNSLGDEQLRLFARILDSKLDACNLKMNMLEGDLGGKSIALETNKIDNLNSSPYLDSNPSSYFNLVQNNMSQAHIYPPLMNISDKNPLGFWPLISGQSSQPSHMVSTAQSSQPSPMVSRAQSFYHEESKAGIYAQSYPCKQIDFNWTHHVDANATNDLKIGMKNDEVENDKNLAPYYYNGNTMTMQSYPIAMPTLPFQNLSNLSSHEHLLNGSYDTNTLQAQMFNYMDGRK*