AlfalfaGEDB | Msa0878060

M. sativa cultivar zhongmu-4 / Msa0878060

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878060	KEH25526.1	89.205	176	19	0	1	176	1	176	4.45e-114	331

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878060	sp\|Q9FX31\|HDG11_ARATH	40.559	143	82	2	23	164	30	170	3.63e-30	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878060	A0A072U821	89.205	176	19	0	1	176	1	176	2.13e-114	331

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TFs/TRs:

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Gene ID	Type	Classification
Msa0878060	TF	HB-other

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878060	MtrunA17_Chr6g0460611	89.130	92	10	0	85	176	1	92	1.52e-56	172
Msa0878060	MtrunA17_Chr6g0481041	36.471	170	99	3	1	164	1	167	3.04e-29	112
Msa0878060	MtrunA17_Chr4g0024351	33.813	139	91	1	26	164	61	198	1.09e-24	99.8
Msa0878060	MtrunA17_Chr2g0322731	30.818	159	106	2	9	164	81	238	8.05e-24	97.4
Msa0878060	MtrunA17_Chr6g0472471	35.625	160	91	4	11	164	54	207	2.16e-21	90.5
Msa0878060	MtrunA17_Chr7g0246631	30.460	174	113	3	4	174	74	242	2.70e-21	90.1
Msa0878060	MtrunA17_Chr1g0203671	32.414	145	89	2	24	164	94	233	1.01e-19	85.5
Msa0878060	MtrunA17_Chr5g0410711	28.767	146	104	0	11	156	75	220	3.34e-19	84.0
Msa0878060	MtrunA17_Chr8g0350321	28.571	161	107	2	11	164	94	253	2.91e-18	81.3
Msa0878060	MtrunA17_Chr7g0224481	34.862	109	59	1	48	156	39	135	4.68e-17	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878060	AT1G73360.1	40.559	143	82	2	23	164	30	170	3.69e-31	119
Msa0878060	AT1G17920.2	42.735	117	64	2	49	164	45	159	3.15e-26	104
Msa0878060	AT1G17920.1	42.735	117	64	2	49	164	45	159	3.15e-26	104
Msa0878060	AT1G05230.8	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.4	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.9	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.10	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.7	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.11	32.692	156	101	2	9	164	51	202	4.27e-24	98.6
Msa0878060	AT1G05230.2	32.692	156	101	2	9	164	51	202	4.27e-24	98.6

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Find 31 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTTTATTCGATGGG+AGG	0.608024	6_1:-18469974	Msa0878060:CDS
AAACGTTCATGCTCATGCAT+TGG	0.496436	6_1:+18469118	None:intergenic
AACCAATATTTGATTTGTTT+GGG	0.298678	6_1:+18469378	None:intergenic
AACGTTCATGCTCATGCATT+GGG	0.431887	6_1:+18469119	None:intergenic
AATATTGGTTCGATAACAAG+AGG	0.612885	6_1:-18469365	Msa0878060:CDS
AATCAATTAGCTAAGGAGGT+TGG	0.482913	6_1:-18469408	Msa0878060:CDS
AATGGAGAATGACATGCTGA+AGG	0.678050	6_1:-18469080	Msa0878060:CDS
ACGAAATCAATTAGCTAAGG+AGG	0.581875	6_1:-18469412	Msa0878060:CDS
AGCCCAAACAAATCAAATAT+TGG	0.294393	6_1:-18469380	Msa0878060:CDS
ATCAATTAGCTAAGGAGGTT+GGG	0.412482	6_1:-18469407	Msa0878060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGAAACAACACATACAAG+TGG	+	chr6_1:18469057-18469076	None:intergenic	30.0%
AAATCATGTCTTCAAATGGA+TGG	+	chr6_1:18469315-18469334	None:intergenic	30.0%
TTGAATAAAGATTCATGGCA+TGG	-	chr6_1:18469382-18469401	Msa0878060:CDS	30.0%
AGCCCAAACAAATCAAATAT+TGG	-	chr6_1:18469460-18469479	Msa0878060:intron	30.0%
TTTCATGCAAAAGATGAGAA+TGG	-	chr6_1:18469742-18469761	Msa0878060:intron	30.0%
ATTGAAACAACACATACAAG+TGG	+	chr6_1:18469057-18469076	None:intergenic	30.0%
AAATCATGTCTTCAAATGGA+TGG	+	chr6_1:18469315-18469334	None:intergenic	30.0%
TTGAATAAAGATTCATGGCA+TGG	-	chr6_1:18469382-18469401	Msa0878060:CDS	30.0%
AGCCCAAACAAATCAAATAT+TGG	-	chr6_1:18469460-18469479	Msa0878060:intron	30.0%
TTTCATGCAAAAGATGAGAA+TGG	-	chr6_1:18469742-18469761	Msa0878060:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	18468869	18469993	18468869	ID=Msa0878060;Name=Msa0878060
chr6_1	mRNA	18468869	18469993	18468869	ID=Msa0878060-mRNA-1;Parent=Msa0878060;Name=Msa0878060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|4\|0\|176
chr6_1	exon	18469869	18469993	18469869	ID=Msa0878060-mRNA-1:exon:5019;Parent=Msa0878060-mRNA-1
chr6_1	exon	18469353	18469470	18469353	ID=Msa0878060-mRNA-1:exon:5018;Parent=Msa0878060-mRNA-1
chr6_1	exon	18469075	18469266	18469075	ID=Msa0878060-mRNA-1:exon:5017;Parent=Msa0878060-mRNA-1
chr6_1	exon	18468869	18468964	18468869	ID=Msa0878060-mRNA-1:exon:5016;Parent=Msa0878060-mRNA-1
chr6_1	CDS	18469869	18469993	18469869	ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1
chr6_1	CDS	18469353	18469470	18469353	ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1
chr6_1	CDS	18469075	18469266	18469075	ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1
chr6_1	CDS	18468869	18468964	18468869	ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1

Gene Sequence

>Msa0878060

ATGGTTTATTCGATGGGAGGCGTCGGTGGGTCTGGAGATAAAGCCATTGATAACTCAGTCTCAGATAATCAAAGCAGACCACAATACAAAGGTTTTAGTGGTTACCAGAGAAGTATACTTCAAAAATTCATGGCATGGAACTCTAACCCAAATGAAGCCCAACGAAATCAATTAGCTAAGGAGGTTGGGCTTGAGCCCAAACAAATCAAATATTGGTTCGATAACAAGAGGACTACACTGAAGAAAAAACACATGAGAGAAGATAACAAAGCTCTTCATGCTGCAAGAAAAGAGCTCATTACTGAAAATATCGTTGTGAAAAAGATATTCAAGATGACATTTTGCGAAAGTTGTGGGGGTCCTCCTTTCCCAATGCATGAGCATGAACGTTTCATGCAAAAGATGAGAATGGAGAATGACATGCTGAAGGAGAAGATCGAGAAGGTGTCCACTCTGCTAGCAAAGTACGAACAGAAGGAAATCTCGCAGTTTGAATTTGAATACACTTTTGCTCGTTTAAATGCATTTTGA

Protein sequence

>Msa0878060

MVYSMGGVGGSGDKAIDNSVSDNQSRPQYKGFSGYQRSILQKFMAWNSNPNEAQRNQLAKEVGLEPKQIKYWFDNKRTTLKKKHMREDNKALHAARKELITENIVVKKIFKMTFCESCGGPPFPMHEHERFMQKMRMENDMLKEKIEKVSTLLAKYEQKEISQFEFEYTFARLNAF*