Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878060 | KEH25526.1 | 89.205 | 176 | 19 | 0 | 1 | 176 | 1 | 176 | 4.45e-114 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878060 | sp|Q9FX31|HDG11_ARATH | 40.559 | 143 | 82 | 2 | 23 | 164 | 30 | 170 | 3.63e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878060 | A0A072U821 | 89.205 | 176 | 19 | 0 | 1 | 176 | 1 | 176 | 2.13e-114 | 331 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0878060 | TF | HB-other |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878060 | MtrunA17_Chr6g0460611 | 89.130 | 92 | 10 | 0 | 85 | 176 | 1 | 92 | 1.52e-56 | 172 |
| Msa0878060 | MtrunA17_Chr6g0481041 | 36.471 | 170 | 99 | 3 | 1 | 164 | 1 | 167 | 3.04e-29 | 112 |
| Msa0878060 | MtrunA17_Chr4g0024351 | 33.813 | 139 | 91 | 1 | 26 | 164 | 61 | 198 | 1.09e-24 | 99.8 |
| Msa0878060 | MtrunA17_Chr2g0322731 | 30.818 | 159 | 106 | 2 | 9 | 164 | 81 | 238 | 8.05e-24 | 97.4 |
| Msa0878060 | MtrunA17_Chr6g0472471 | 35.625 | 160 | 91 | 4 | 11 | 164 | 54 | 207 | 2.16e-21 | 90.5 |
| Msa0878060 | MtrunA17_Chr7g0246631 | 30.460 | 174 | 113 | 3 | 4 | 174 | 74 | 242 | 2.70e-21 | 90.1 |
| Msa0878060 | MtrunA17_Chr1g0203671 | 32.414 | 145 | 89 | 2 | 24 | 164 | 94 | 233 | 1.01e-19 | 85.5 |
| Msa0878060 | MtrunA17_Chr5g0410711 | 28.767 | 146 | 104 | 0 | 11 | 156 | 75 | 220 | 3.34e-19 | 84.0 |
| Msa0878060 | MtrunA17_Chr8g0350321 | 28.571 | 161 | 107 | 2 | 11 | 164 | 94 | 253 | 2.91e-18 | 81.3 |
| Msa0878060 | MtrunA17_Chr7g0224481 | 34.862 | 109 | 59 | 1 | 48 | 156 | 39 | 135 | 4.68e-17 | 77.0 |
| Msa0878060 | MtrunA17_Chr7g0224451 | 34.862 | 109 | 59 | 1 | 48 | 156 | 39 | 135 | 7.21e-17 | 77.0 |
| Msa0878060 | MtrunA17_Chr2g0331581 | 30.435 | 138 | 89 | 2 | 29 | 162 | 143 | 277 | 7.54e-17 | 77.4 |
| Msa0878060 | MtrunA17_Chr5g0419821 | 40.000 | 100 | 57 | 2 | 50 | 148 | 59 | 156 | 5.49e-15 | 68.9 |
| Msa0878060 | MtrunA17_Chr5g0394111 | 35.780 | 109 | 66 | 3 | 40 | 147 | 48 | 153 | 3.16e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878060 | AT1G73360.1 | 40.559 | 143 | 82 | 2 | 23 | 164 | 30 | 170 | 3.69e-31 | 119 |
| Msa0878060 | AT1G17920.2 | 42.735 | 117 | 64 | 2 | 49 | 164 | 45 | 159 | 3.15e-26 | 104 |
| Msa0878060 | AT1G17920.1 | 42.735 | 117 | 64 | 2 | 49 | 164 | 45 | 159 | 3.15e-26 | 104 |
| Msa0878060 | AT1G05230.8 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.4 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.9 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.10 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.7 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.11 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.2 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.6 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.5 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.1 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.27e-24 | 98.6 |
| Msa0878060 | AT1G05230.3 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 4.43e-24 | 98.6 |
| Msa0878060 | AT4G21750.2 | 32.680 | 153 | 98 | 2 | 13 | 161 | 46 | 197 | 8.82e-23 | 94.7 |
| Msa0878060 | AT4G21750.1 | 32.680 | 153 | 98 | 2 | 13 | 161 | 46 | 197 | 8.82e-23 | 94.7 |
| Msa0878060 | AT4G21750.3 | 32.680 | 153 | 98 | 2 | 13 | 161 | 46 | 197 | 8.82e-23 | 94.7 |
| Msa0878060 | AT4G21750.4 | 32.680 | 153 | 98 | 2 | 13 | 161 | 46 | 197 | 8.82e-23 | 94.7 |
| Msa0878060 | AT1G05230.12 | 32.692 | 156 | 101 | 2 | 9 | 164 | 51 | 202 | 3.32e-22 | 93.2 |
| Msa0878060 | AT3G03260.2 | 32.468 | 154 | 104 | 0 | 7 | 160 | 5 | 158 | 7.48e-22 | 92.0 |
| Msa0878060 | AT3G03260.1 | 37.190 | 121 | 76 | 0 | 40 | 160 | 38 | 158 | 9.65e-22 | 91.7 |
| Msa0878060 | AT4G04890.2 | 33.113 | 151 | 99 | 2 | 11 | 161 | 49 | 197 | 1.22e-21 | 91.7 |
| Msa0878060 | AT4G04890.1 | 33.113 | 151 | 99 | 2 | 11 | 161 | 49 | 197 | 1.22e-21 | 91.7 |
| Msa0878060 | AT3G61150.1 | 30.822 | 146 | 99 | 2 | 11 | 156 | 97 | 240 | 5.38e-19 | 84.0 |
| Msa0878060 | AT5G17320.1 | 32.624 | 141 | 95 | 0 | 16 | 156 | 17 | 157 | 4.68e-18 | 81.3 |
| Msa0878060 | AT5G52170.2 | 34.328 | 134 | 87 | 1 | 29 | 162 | 61 | 193 | 9.01e-18 | 80.5 |
| Msa0878060 | AT5G52170.3 | 34.328 | 134 | 87 | 1 | 29 | 162 | 61 | 193 | 9.90e-18 | 80.1 |
| Msa0878060 | AT5G52170.1 | 34.328 | 134 | 87 | 1 | 29 | 162 | 61 | 193 | 9.90e-18 | 80.1 |
| Msa0878060 | AT4G00730.1 | 29.655 | 145 | 92 | 3 | 17 | 156 | 125 | 264 | 1.27e-17 | 80.1 |
| Msa0878060 | AT5G46880.3 | 27.922 | 154 | 95 | 3 | 12 | 156 | 93 | 239 | 2.81e-17 | 79.0 |
| Msa0878060 | AT5G46880.1 | 27.922 | 154 | 95 | 3 | 12 | 156 | 93 | 239 | 2.81e-17 | 79.0 |
| Msa0878060 | AT5G46880.2 | 27.922 | 154 | 95 | 3 | 12 | 156 | 93 | 239 | 2.81e-17 | 79.0 |
| Msa0878060 | AT4G00730.2 | 29.655 | 145 | 92 | 3 | 17 | 156 | 125 | 264 | 2.84e-17 | 79.0 |
| Msa0878060 | AT1G79840.2 | 30.070 | 143 | 88 | 2 | 15 | 155 | 120 | 252 | 3.34e-17 | 78.6 |
| Msa0878060 | AT1G79840.1 | 30.070 | 143 | 88 | 2 | 15 | 155 | 91 | 223 | 3.91e-17 | 78.6 |
| Msa0878060 | AT1G79840.3 | 30.070 | 143 | 88 | 2 | 15 | 155 | 33 | 165 | 3.96e-17 | 78.6 |
| Msa0878060 | AT1G79840.6 | 30.070 | 143 | 88 | 2 | 15 | 155 | 33 | 165 | 3.96e-17 | 78.6 |
| Msa0878060 | AT1G34650.1 | 33.871 | 124 | 81 | 1 | 33 | 156 | 24 | 146 | 3.56e-16 | 75.9 |
| Msa0878060 | AT1G79840.5 | 29.530 | 149 | 88 | 3 | 9 | 155 | 90 | 223 | 8.80e-16 | 74.7 |
| Msa0878060 | AT1G79840.4 | 29.530 | 149 | 88 | 3 | 9 | 155 | 90 | 223 | 8.82e-16 | 74.7 |
| Msa0878060 | AT4G17710.1 | 28.346 | 127 | 78 | 1 | 28 | 154 | 91 | 204 | 3.08e-15 | 73.2 |
| Msa0878060 | AT2G32370.1 | 27.451 | 153 | 102 | 2 | 10 | 158 | 53 | 200 | 3.37e-12 | 64.3 |
Find 31 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTCGTTGGGCTTCATT+TGG | 0.279004 | 6_1:+18469426 | None:intergenic |
| GAACCAATATTTGATTTGTT+TGG | 0.280936 | 6_1:+18469377 | None:intergenic |
| AGCCCAAACAAATCAAATAT+TGG | 0.294393 | 6_1:-18469380 | Msa0878060:CDS |
| AACCAATATTTGATTTGTTT+GGG | 0.298678 | 6_1:+18469378 | None:intergenic |
| ATGGGAGGCGTCGGTGGGTC+TGG | 0.334236 | 6_1:-18469959 | Msa0878060:CDS |
| GATTTCGTTGGGCTTCATTT+GGG | 0.397275 | 6_1:+18469427 | None:intergenic |
| CTTAGCTAATTGATTTCGTT+GGG | 0.409743 | 6_1:+18469416 | None:intergenic |
| ATCAATTAGCTAAGGAGGTT+GGG | 0.412482 | 6_1:-18469407 | Msa0878060:CDS |
| CCTTAGCTAATTGATTTCGT+TGG | 0.420498 | 6_1:+18469415 | None:intergenic |
| AACGTTCATGCTCATGCATT+GGG | 0.431887 | 6_1:+18469119 | None:intergenic |
| TTGAATAAAGATTCATGGCA+TGG | 0.442896 | 6_1:-18469458 | Msa0878060:intron |
| TATTCGATGGGAGGCGTCGG+TGG | 0.460383 | 6_1:-18469965 | Msa0878060:CDS |
| ATCTGAGACTGAGTTATCAA+TGG | 0.465187 | 6_1:+18469928 | None:intergenic |
| AATCAATTAGCTAAGGAGGT+TGG | 0.482913 | 6_1:-18469408 | Msa0878060:CDS |
| AAACGTTCATGCTCATGCAT+TGG | 0.496436 | 6_1:+18469118 | None:intergenic |
| TTTCATGCAAAAGATGAGAA+TGG | 0.506914 | 6_1:-18469098 | Msa0878060:CDS |
| CCACTAAAACCTTTGTATTG+TGG | 0.519309 | 6_1:+18469893 | None:intergenic |
| ATTCGATGGGAGGCGTCGGT+GGG | 0.547865 | 6_1:-18469964 | Msa0878060:CDS |
| TGCTCATGCATTGGGAAAGG+AGG | 0.551665 | 6_1:+18469127 | None:intergenic |
| GAATGACATGCTGAAGGAGA+AGG | 0.560673 | 6_1:-18469074 | Msa0878060:intron |
| ACGAAATCAATTAGCTAAGG+AGG | 0.581875 | 6_1:-18469412 | Msa0878060:CDS |
| GCTAGCAAAGTACGAACAGA+AGG | 0.588593 | 6_1:-18468922 | Msa0878060:CDS |
| TCATGCTCATGCATTGGGAA+AGG | 0.590182 | 6_1:+18469124 | None:intergenic |
| GTTTATTCGATGGGAGGCGT+CGG | 0.591995 | 6_1:-18469968 | Msa0878060:CDS |
| CCAACGAAATCAATTAGCTA+AGG | 0.600046 | 6_1:-18469415 | Msa0878060:CDS |
| AAAATGGTTTATTCGATGGG+AGG | 0.608024 | 6_1:-18469974 | Msa0878060:CDS |
| AATATTGGTTCGATAACAAG+AGG | 0.612885 | 6_1:-18469365 | Msa0878060:CDS |
| TAACAAGAGGACTACACTGA+AGG | 0.614720 | 6_1:-18469352 | Msa0878060:intron |
| TTCGTACTTTGCTAGCAGAG+TGG | 0.633061 | 6_1:+18468929 | None:intergenic |
| CAAAGCAGACCACAATACAA+AGG | 0.659814 | 6_1:-18469902 | Msa0878060:CDS |
| AATGGAGAATGACATGCTGA+AGG | 0.678050 | 6_1:-18469080 | Msa0878060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTATTACTTGATTTAT+TGG | - | chr6_1:18469085-18469104 | Msa0878060:CDS | 15.0% |
| !!! | TATATTTTAAACCATCAAAA+TGG | - | chr6_1:18469155-18469174 | Msa0878060:CDS | 15.0% |
| !!! | TTATTTTGAATAAAGATTCA+TGG | - | chr6_1:18469377-18469396 | Msa0878060:CDS | 15.0% |
| !!! | TCTTTTATTACTTGATTTAT+TGG | - | chr6_1:18469085-18469104 | Msa0878060:CDS | 15.0% |
| !!! | TATATTTTAAACCATCAAAA+TGG | - | chr6_1:18469155-18469174 | Msa0878060:CDS | 15.0% |
| !!! | TTATTTTGAATAAAGATTCA+TGG | - | chr6_1:18469377-18469396 | Msa0878060:CDS | 15.0% |
| !!! | TATGTGTTGTTTCAATTTAT+TGG | - | chr6_1:18469061-18469080 | Msa0878060:intron | 20.0% |
| !!! | TACTTGATTTATTGGTTTTA+TGG | - | chr6_1:18469093-18469112 | Msa0878060:CDS | 20.0% |
| !!! | ACTTGATTTATTGGTTTTAT+GGG | - | chr6_1:18469094-18469113 | Msa0878060:CDS | 20.0% |
| !! | TTTACTACAAAATTGATGTA+TGG | + | chr6_1:18469121-18469140 | None:intergenic | 20.0% |
| !!! | AACCAATATTTGATTTGTTT+GGG | + | chr6_1:18469465-18469484 | None:intergenic | 20.0% |
| !!! | TATGTGTTGTTTCAATTTAT+TGG | - | chr6_1:18469061-18469080 | Msa0878060:intron | 20.0% |
| !!! | TACTTGATTTATTGGTTTTA+TGG | - | chr6_1:18469093-18469112 | Msa0878060:CDS | 20.0% |
| !!! | ACTTGATTTATTGGTTTTAT+GGG | - | chr6_1:18469094-18469113 | Msa0878060:CDS | 20.0% |
| !! | TTTACTACAAAATTGATGTA+TGG | + | chr6_1:18469121-18469140 | None:intergenic | 20.0% |
| !!! | AACCAATATTTGATTTGTTT+GGG | + | chr6_1:18469465-18469484 | None:intergenic | 20.0% |
| !!! | GAACCAATATTTGATTTGTT+TGG | + | chr6_1:18469466-18469485 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTCAGATCGAGA+AGG | - | chr6_1:18469885-18469904 | Msa0878060:CDS | 25.0% |
| !!! | GAACCAATATTTGATTTGTT+TGG | + | chr6_1:18469466-18469485 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTCAGATCGAGA+AGG | - | chr6_1:18469885-18469904 | Msa0878060:CDS | 25.0% |
| !!! | ACTTTTGAAGTATACTTCTC+TGG | + | chr6_1:18468976-18468995 | None:intergenic | 30.0% |
| ATTGAAACAACACATACAAG+TGG | + | chr6_1:18469057-18469076 | None:intergenic | 30.0% | |
| ! | TGTTATCAAGACCATTTTGA+TGG | + | chr6_1:18469169-18469188 | None:intergenic | 30.0% |
| AAATCATGTCTTCAAATGGA+TGG | + | chr6_1:18469315-18469334 | None:intergenic | 30.0% | |
| TTGAATAAAGATTCATGGCA+TGG | - | chr6_1:18469382-18469401 | Msa0878060:CDS | 30.0% | |
| ! | CTTAGCTAATTGATTTCGTT+GGG | + | chr6_1:18469427-18469446 | None:intergenic | 30.0% |
| AGCCCAAACAAATCAAATAT+TGG | - | chr6_1:18469460-18469479 | Msa0878060:intron | 30.0% | |
| !! | AATATTGGTTCGATAACAAG+AGG | - | chr6_1:18469475-18469494 | Msa0878060:intron | 30.0% |
| TTTCATGCAAAAGATGAGAA+TGG | - | chr6_1:18469742-18469761 | Msa0878060:intron | 30.0% | |
| !!! | ACTTTTGAAGTATACTTCTC+TGG | + | chr6_1:18468976-18468995 | None:intergenic | 30.0% |
| ATTGAAACAACACATACAAG+TGG | + | chr6_1:18469057-18469076 | None:intergenic | 30.0% | |
| ! | TGTTATCAAGACCATTTTGA+TGG | + | chr6_1:18469169-18469188 | None:intergenic | 30.0% |
| AAATCATGTCTTCAAATGGA+TGG | + | chr6_1:18469315-18469334 | None:intergenic | 30.0% | |
| TTGAATAAAGATTCATGGCA+TGG | - | chr6_1:18469382-18469401 | Msa0878060:CDS | 30.0% | |
| ! | CTTAGCTAATTGATTTCGTT+GGG | + | chr6_1:18469427-18469446 | None:intergenic | 30.0% |
| AGCCCAAACAAATCAAATAT+TGG | - | chr6_1:18469460-18469479 | Msa0878060:intron | 30.0% | |
| !! | AATATTGGTTCGATAACAAG+AGG | - | chr6_1:18469475-18469494 | Msa0878060:intron | 30.0% |
| TTTCATGCAAAAGATGAGAA+TGG | - | chr6_1:18469742-18469761 | Msa0878060:intron | 30.0% | |
| ! | ATCTGAGACTGAGTTATCAA+TGG | + | chr6_1:18468915-18468934 | None:intergenic | 35.0% |
| CCACTAAAACCTTTGTATTG+TGG | + | chr6_1:18468950-18468969 | None:intergenic | 35.0% | |
| !! | CCACAATACAAAGGTTTTAG+TGG | - | chr6_1:18468947-18468966 | Msa0878060:intron | 35.0% |
| CGACAAATCATGTCTTCAAA+TGG | + | chr6_1:18469319-18469338 | None:intergenic | 35.0% | |
| ! | CCTTAGCTAATTGATTTCGT+TGG | + | chr6_1:18469428-18469447 | None:intergenic | 35.0% |
| CCAACGAAATCAATTAGCTA+AGG | - | chr6_1:18469425-18469444 | Msa0878060:CDS | 35.0% | |
| ACGAAATCAATTAGCTAAGG+AGG | - | chr6_1:18469428-18469447 | Msa0878060:CDS | 35.0% | |
| AATCAATTAGCTAAGGAGGT+TGG | - | chr6_1:18469432-18469451 | Msa0878060:CDS | 35.0% | |
| ATCAATTAGCTAAGGAGGTT+GGG | - | chr6_1:18469433-18469452 | Msa0878060:CDS | 35.0% | |
| ! | ATGACATTTTGCGAAAGTTG+TGG | - | chr6_1:18469686-18469705 | Msa0878060:intron | 35.0% |
| ! | TGACATTTTGCGAAAGTTGT+GGG | - | chr6_1:18469687-18469706 | Msa0878060:intron | 35.0% |
| ! | ATCTGAGACTGAGTTATCAA+TGG | + | chr6_1:18468915-18468934 | None:intergenic | 35.0% |
| CCACTAAAACCTTTGTATTG+TGG | + | chr6_1:18468950-18468969 | None:intergenic | 35.0% | |
| !! | CCACAATACAAAGGTTTTAG+TGG | - | chr6_1:18468947-18468966 | Msa0878060:intron | 35.0% |
| CGACAAATCATGTCTTCAAA+TGG | + | chr6_1:18469319-18469338 | None:intergenic | 35.0% | |
| ! | CCTTAGCTAATTGATTTCGT+TGG | + | chr6_1:18469428-18469447 | None:intergenic | 35.0% |
| CCAACGAAATCAATTAGCTA+AGG | - | chr6_1:18469425-18469444 | Msa0878060:CDS | 35.0% | |
| ACGAAATCAATTAGCTAAGG+AGG | - | chr6_1:18469428-18469447 | Msa0878060:CDS | 35.0% | |
| AATCAATTAGCTAAGGAGGT+TGG | - | chr6_1:18469432-18469451 | Msa0878060:CDS | 35.0% | |
| ATCAATTAGCTAAGGAGGTT+GGG | - | chr6_1:18469433-18469452 | Msa0878060:CDS | 35.0% | |
| ! | ATGACATTTTGCGAAAGTTG+TGG | - | chr6_1:18469686-18469705 | Msa0878060:intron | 35.0% |
| ! | TGACATTTTGCGAAAGTTGT+GGG | - | chr6_1:18469687-18469706 | Msa0878060:intron | 35.0% |
| CAAAGCAGACCACAATACAA+AGG | - | chr6_1:18468938-18468957 | Msa0878060:CDS | 40.0% | |
| GATTTCGTTGGGCTTCATTT+GGG | + | chr6_1:18469416-18469435 | None:intergenic | 40.0% | |
| TGATTTCGTTGGGCTTCATT+TGG | + | chr6_1:18469417-18469436 | None:intergenic | 40.0% | |
| TAACAAGAGGACTACACTGA+AGG | - | chr6_1:18469488-18469507 | Msa0878060:intron | 40.0% | |
| ! | GACATTTTGCGAAAGTTGTG+GGG | - | chr6_1:18469688-18469707 | Msa0878060:intron | 40.0% |
| ! | ACATTTTGCGAAAGTTGTGG+GGG | - | chr6_1:18469689-18469708 | Msa0878060:intron | 40.0% |
| AACGTTCATGCTCATGCATT+GGG | + | chr6_1:18469724-18469743 | None:intergenic | 40.0% | |
| AAACGTTCATGCTCATGCAT+TGG | + | chr6_1:18469725-18469744 | None:intergenic | 40.0% | |
| AATGGAGAATGACATGCTGA+AGG | - | chr6_1:18469760-18469779 | Msa0878060:intron | 40.0% | |
| CAAAGCAGACCACAATACAA+AGG | - | chr6_1:18468938-18468957 | Msa0878060:CDS | 40.0% | |
| GATTTCGTTGGGCTTCATTT+GGG | + | chr6_1:18469416-18469435 | None:intergenic | 40.0% | |
| TGATTTCGTTGGGCTTCATT+TGG | + | chr6_1:18469417-18469436 | None:intergenic | 40.0% | |
| TAACAAGAGGACTACACTGA+AGG | - | chr6_1:18469488-18469507 | Msa0878060:intron | 40.0% | |
| ! | GACATTTTGCGAAAGTTGTG+GGG | - | chr6_1:18469688-18469707 | Msa0878060:intron | 40.0% |
| ! | ACATTTTGCGAAAGTTGTGG+GGG | - | chr6_1:18469689-18469708 | Msa0878060:intron | 40.0% |
| AACGTTCATGCTCATGCATT+GGG | + | chr6_1:18469724-18469743 | None:intergenic | 40.0% | |
| AAACGTTCATGCTCATGCAT+TGG | + | chr6_1:18469725-18469744 | None:intergenic | 40.0% | |
| AATGGAGAATGACATGCTGA+AGG | - | chr6_1:18469760-18469779 | Msa0878060:intron | 40.0% | |
| TCATGCTCATGCATTGGGAA+AGG | + | chr6_1:18469719-18469738 | None:intergenic | 45.0% | |
| GAATGACATGCTGAAGGAGA+AGG | - | chr6_1:18469766-18469785 | Msa0878060:intron | 45.0% | |
| TTCGTACTTTGCTAGCAGAG+TGG | + | chr6_1:18469914-18469933 | None:intergenic | 45.0% | |
| GCTAGCAAAGTACGAACAGA+AGG | - | chr6_1:18469918-18469937 | Msa0878060:CDS | 45.0% | |
| TCATGCTCATGCATTGGGAA+AGG | + | chr6_1:18469719-18469738 | None:intergenic | 45.0% | |
| GAATGACATGCTGAAGGAGA+AGG | - | chr6_1:18469766-18469785 | Msa0878060:intron | 45.0% | |
| TTCGTACTTTGCTAGCAGAG+TGG | + | chr6_1:18469914-18469933 | None:intergenic | 45.0% | |
| GCTAGCAAAGTACGAACAGA+AGG | - | chr6_1:18469918-18469937 | Msa0878060:CDS | 45.0% | |
| !!! | TAATACTTAATTATTTTTTA+GGG | + | chr6_1:18469847-18469866 | None:intergenic | 5.0% |
| !!! | ATAATACTTAATTATTTTTT+AGG | + | chr6_1:18469848-18469867 | None:intergenic | 5.0% |
| !!! | TAATACTTAATTATTTTTTA+GGG | + | chr6_1:18469847-18469866 | None:intergenic | 5.0% |
| !!! | ATAATACTTAATTATTTTTT+AGG | + | chr6_1:18469848-18469867 | None:intergenic | 5.0% |
| ! | GTTTATTCGATGGGAGGCGT+CGG | - | chr6_1:18468872-18468891 | Msa0878060:CDS | 50.0% |
| TGCTCATGCATTGGGAAAGG+AGG | + | chr6_1:18469716-18469735 | None:intergenic | 50.0% | |
| ! | GTTTATTCGATGGGAGGCGT+CGG | - | chr6_1:18468872-18468891 | Msa0878060:CDS | 50.0% |
| TGCTCATGCATTGGGAAAGG+AGG | + | chr6_1:18469716-18469735 | None:intergenic | 50.0% | |
| !! | TATTCGATGGGAGGCGTCGG+TGG | - | chr6_1:18468875-18468894 | Msa0878060:CDS | 60.0% |
| !! | ATTCGATGGGAGGCGTCGGT+GGG | - | chr6_1:18468876-18468895 | Msa0878060:CDS | 60.0% |
| !! | TATTCGATGGGAGGCGTCGG+TGG | - | chr6_1:18468875-18468894 | Msa0878060:CDS | 60.0% |
| !! | ATTCGATGGGAGGCGTCGGT+GGG | - | chr6_1:18468876-18468895 | Msa0878060:CDS | 60.0% |
| !! | ATGGGAGGCGTCGGTGGGTC+TGG | - | chr6_1:18468881-18468900 | Msa0878060:CDS | 70.0% |
| !! | ATGGGAGGCGTCGGTGGGTC+TGG | - | chr6_1:18468881-18468900 | Msa0878060:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 18468869 | 18469993 | 18468869 | ID=Msa0878060;Name=Msa0878060 |
| chr6_1 | mRNA | 18468869 | 18469993 | 18468869 | ID=Msa0878060-mRNA-1;Parent=Msa0878060;Name=Msa0878060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|4|0|176 |
| chr6_1 | exon | 18469869 | 18469993 | 18469869 | ID=Msa0878060-mRNA-1:exon:5019;Parent=Msa0878060-mRNA-1 |
| chr6_1 | exon | 18469353 | 18469470 | 18469353 | ID=Msa0878060-mRNA-1:exon:5018;Parent=Msa0878060-mRNA-1 |
| chr6_1 | exon | 18469075 | 18469266 | 18469075 | ID=Msa0878060-mRNA-1:exon:5017;Parent=Msa0878060-mRNA-1 |
| chr6_1 | exon | 18468869 | 18468964 | 18468869 | ID=Msa0878060-mRNA-1:exon:5016;Parent=Msa0878060-mRNA-1 |
| chr6_1 | CDS | 18469869 | 18469993 | 18469869 | ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1 |
| chr6_1 | CDS | 18469353 | 18469470 | 18469353 | ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1 |
| chr6_1 | CDS | 18469075 | 18469266 | 18469075 | ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1 |
| chr6_1 | CDS | 18468869 | 18468964 | 18468869 | ID=Msa0878060-mRNA-1:cds;Parent=Msa0878060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
