AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0878140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878140 MtrunA17_Chr6g0460671 97.059 170 5 0 1 170 1 170 8.68e-118 340
Msa0878140 MtrunA17_Chr6g0460671 94.186 86 5 0 171 256 262 347 4.14e-48 162
Msa0878140 MtrunA17_Chr5g0417621 56.364 110 45 1 61 170 99 205 3.01e-35 130
Msa0878140 MtrunA17_Chr4g0042501 69.620 79 24 0 92 170 98 176 9.35e-35 129
Msa0878140 MtrunA17_Chr7g0254261 56.667 120 46 1 57 170 41 160 1.47e-34 127
Msa0878140 MtrunA17_Chr6g0480581 72.222 72 20 0 99 170 4 75 1.68e-33 121
Msa0878140 MtrunA17_Chr6g0460661 55.140 107 28 2 64 170 1 87 2.97e-31 113
Msa0878140 MtrunA17_Chr3g0125801 67.949 78 25 0 93 170 10 87 2.80e-30 114
Msa0878140 MtrunA17_Chr4g0008551 56.164 73 32 0 98 170 37 109 1.11e-24 100
Msa0878140 MtrunA17_Chr4g0053431 56.164 73 32 0 98 170 4 76 5.83e-24 97.4
Msa0878140 MtrunA17_Chr5g0401731 53.425 73 34 0 98 170 14 86 1.71e-23 97.1
Msa0878140 MtrunA17_Chr6g0454921 52.055 73 35 0 98 170 14 86 1.72e-21 89.4
Msa0878140 MtrunA17_Chr5g0437321 49.315 73 37 0 98 170 18 90 7.76e-20 86.3
Msa0878140 MtrunA17_Chr3g0133601 49.315 73 37 0 98 170 36 108 5.79e-19 82.8
Msa0878140 MtrunA17_Chr3g0139671 45.122 82 44 1 89 170 76 156 4.37e-18 83.6
Msa0878140 MtrunA17_Chr1g0157731 42.683 82 46 1 89 170 82 162 1.36e-16 79.3
Msa0878140 MtrunA17_Chr5g0429661 41.053 95 50 1 72 166 101 189 6.80e-16 76.3
Msa0878140 MtrunA17_Chr7g0238631 43.902 82 45 1 89 170 104 184 1.14e-15 76.3
Msa0878140 MtrunA17_Chr2g0311221 46.575 73 38 1 99 170 16 88 9.69e-14 69.7
Msa0878140 MtrunA17_Chr3g0117511 47.826 69 36 0 98 166 182 250 2.81e-13 68.9
Msa0878140 MtrunA17_Chr7g0228531 45.205 73 39 1 98 170 219 290 2.88e-13 68.9
Msa0878140 MtrunA17_Chr5g0397841 41.463 82 47 1 89 170 101 181 2.89e-13 68.9
Msa0878140 MtrunA17_Chr4g0042611 43.836 73 40 1 99 170 14 86 3.21e-13 63.9
Msa0878140 MtrunA17_Chr4g0032401 45.205 73 39 1 99 170 19 91 3.33e-13 68.2
Msa0878140 MtrunA17_Chr4g0058991 40.000 70 42 0 98 167 208 277 3.50e-13 68.6
Msa0878140 MtrunA17_Chr5g0395221 42.466 73 41 1 99 170 14 86 4.23e-13 63.5
Msa0878140 MtrunA17_Chr2g0328771 45.205 73 39 1 99 170 22 94 4.36e-13 67.8
Msa0878140 MtrunA17_Chr7g0228481 46.575 73 38 1 98 170 219 290 6.39e-13 67.8
Msa0878140 MtrunA17_Chr3g0115821 44.595 74 38 2 99 170 14 86 6.58e-13 67.4
Msa0878140 MtrunA17_Chr2g0323351 47.143 70 34 2 99 166 14 82 6.69e-13 66.6
Msa0878140 MtrunA17_Chr7g0217221 35.577 104 63 2 99 201 14 114 7.56e-13 66.6
Msa0878140 MtrunA17_Chr3g0092401 34.821 112 68 3 99 208 15 123 9.63e-13 66.6
Msa0878140 MtrunA17_Chr5g0425591 42.466 73 41 1 99 170 11 83 1.04e-12 62.8
Msa0878140 MtrunA17_Chr3g0088461 41.860 86 48 2 86 170 12 96 1.05e-12 67.0
Msa0878140 MtrunA17_Chr6g0453471 36.538 104 62 2 99 201 14 114 1.18e-12 67.0
Msa0878140 MtrunA17_Chr4g0060721 34.483 116 71 3 95 208 10 122 1.39e-12 66.6
Msa0878140 MtrunA17_Chr5g0417821 42.466 73 41 1 99 170 9 81 1.71e-12 65.9
Msa0878140 MtrunA17_Chr2g0323411 43.836 73 40 1 99 170 14 86 1.96e-12 65.9
Msa0878140 MtrunA17_Chr8g0342511 41.892 74 40 2 99 170 14 86 2.12e-12 62.0
Msa0878140 MtrunA17_Chr6g0453211 38.824 85 48 2 99 182 14 95 4.81e-12 64.7
Msa0878140 MtrunA17_Chr5g0440781 41.096 73 42 1 99 170 14 86 4.87e-12 63.2
Msa0878140 MtrunA17_Chr4g0058631 29.861 144 87 5 99 232 14 153 4.99e-12 65.1
Msa0878140 MtrunA17_Chr7g0271241 43.243 74 39 2 99 170 14 86 6.52e-12 64.7
Msa0878140 MtrunA17_Chr7g0270891 41.096 73 42 1 99 170 14 86 7.28e-12 64.7
Msa0878140 MtrunA17_Chr1g0193801 41.096 73 42 1 99 170 14 86 7.29e-12 64.7
Msa0878140 MtrunA17_Chr5g0440761 41.096 73 42 1 99 170 14 86 7.41e-12 63.9
Msa0878140 MtrunA17_Chr4g0042671 43.836 73 40 1 99 170 14 86 7.59e-12 64.7
Msa0878140 MtrunA17_Chr8g0342471 41.892 74 41 1 99 170 14 87 7.63e-12 61.6
Msa0878140 MtrunA17_Chr5g0441141 41.096 73 42 1 99 170 14 86 7.64e-12 63.9
Msa0878140 MtrunA17_Chr8g0360111 43.836 73 40 1 99 170 27 99 1.16e-11 63.2
Msa0878140 MtrunA17_Chr3g0099141 42.466 73 41 1 99 170 42 114 1.26e-11 60.8
Msa0878140 MtrunA17_Chr8g0342531 40.541 74 41 2 99 170 14 86 1.41e-11 61.2
Msa0878140 MtrunA17_Chr8g0342461 40.541 74 42 1 99 170 14 87 1.53e-11 60.8
Msa0878140 MtrunA17_Chr3g0104501 51.923 52 25 0 98 149 132 183 1.55e-11 62.0
Msa0878140 MtrunA17_Chr5g0397231 38.824 85 48 2 99 182 14 95 1.67e-11 63.5
Msa0878140 MtrunA17_Chr7g0228401 47.541 61 32 0 110 170 290 350 1.95e-11 63.5
Msa0878140 MtrunA17_Chr4g0055981 42.169 83 46 2 90 170 47 129 2.02e-11 62.0
Msa0878140 MtrunA17_Chr5g0410961 39.726 73 43 1 99 170 14 86 2.45e-11 62.8
Msa0878140 MtrunA17_Chr4g0022901 43.478 69 38 1 99 166 15 83 2.65e-11 62.4
Msa0878140 MtrunA17_Chr1g0192411 40.000 70 41 1 99 167 14 83 3.01e-11 62.8
Msa0878140 MtrunA17_Chr4g0022931 43.478 69 38 1 99 166 15 83 3.28e-11 62.0
Msa0878140 MtrunA17_Chr2g0281071 42.466 73 41 1 99 170 15 87 3.31e-11 62.4
Msa0878140 MtrunA17_Chr3g0103281 41.096 73 42 1 99 170 14 86 3.65e-11 62.4
Msa0878140 MtrunA17_Chr4g0048511 43.836 73 40 1 99 170 15 87 3.72e-11 62.4
Msa0878140 MtrunA17_Chr7g0254411 33.654 104 65 2 99 201 14 114 4.00e-11 62.4
Msa0878140 MtrunA17_Chr7g0220341 41.333 75 41 1 99 170 27 101 4.31e-11 61.6
Msa0878140 MtrunA17_Chr5g0434911 41.096 73 42 1 99 170 23 95 5.21e-11 61.6
Msa0878140 MtrunA17_Chr5g0400821 43.243 74 40 2 99 170 14 87 5.67e-11 61.6
Msa0878140 MtrunA17_Chr1g0193371 40.541 74 41 2 99 170 14 86 6.02e-11 62.0
Msa0878140 MtrunA17_Chr7g0274581 42.466 73 41 1 99 170 14 86 6.40e-11 60.5
Msa0878140 MtrunA17_Chr1g0177901 45.902 61 33 0 110 170 5 65 6.82e-11 60.5
Msa0878140 MtrunA17_Chr1g0203441 31.304 115 73 3 99 210 15 126 7.41e-11 60.8
Msa0878140 MtrunA17_Chr7g0228991 34.021 97 58 2 80 170 7 103 7.58e-11 60.8
Msa0878140 MtrunA17_Chr3g0117091 40.541 74 41 2 99 170 14 86 7.58e-11 61.6
Msa0878140 MtrunA17_Chr1g0211161 40.541 74 41 2 99 170 15 87 8.26e-11 60.5
Msa0878140 MtrunA17_Chr4g0022911 42.029 69 39 1 99 166 15 83 9.75e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0878140 AT1G17950.1 72.222 72 20 0 99 170 5 76 5.14e-34 123
Msa0878140 AT1G69560.1 73.611 72 19 0 99 170 107 178 2.22e-33 124
Msa0878140 AT1G69560.2 73.611 72 19 0 99 170 123 194 2.54e-33 124
Msa0878140 AT1G26780.1 73.611 72 19 0 99 170 98 169 7.03e-33 121
Msa0878140 AT5G17800.1 69.231 78 24 0 93 170 87 164 2.07e-32 121
Msa0878140 AT1G26780.2 73.611 72 19 0 99 170 98 169 2.20e-32 122
Msa0878140 AT3G29020.1 63.636 77 28 0 94 170 60 136 8.19e-30 112
Msa0878140 AT1G73410.1 73.611 72 19 0 99 170 6 77 8.46e-30 112
Msa0878140 AT1G73410.2 73.611 72 19 0 99 170 6 77 9.78e-30 111
Msa0878140 AT4G33450.1 61.728 81 30 1 91 170 10 90 1.56e-29 112
Msa0878140 AT3G29020.2 63.636 77 28 0 94 170 62 138 4.03e-29 112
Msa0878140 AT5G39700.1 60.563 71 28 0 100 170 57 127 1.25e-23 94.7
Msa0878140 AT3G55730.1 57.534 73 31 0 98 170 55 127 1.59e-23 98.6
Msa0878140 AT5G67300.1 53.425 73 34 0 98 170 5 77 1.08e-22 94.7
Msa0878140 AT4G37260.1 54.795 73 33 0 98 170 12 84 1.50e-22 94.7
Msa0878140 AT2G39880.1 51.899 79 38 0 92 170 43 121 3.03e-21 91.7
Msa0878140 AT3G50060.1 47.945 73 38 0 98 170 5 77 5.40e-21 90.1
Msa0878140 AT2G23290.1 50.685 73 36 0 98 170 12 84 5.12e-20 87.8
Msa0878140 AT3G09230.1 50.685 73 36 0 98 170 54 126 1.01e-19 87.8
Msa0878140 AT3G09370.1 47.945 73 38 0 98 170 129 201 1.00e-16 79.7
Msa0878140 AT3G09370.2 47.945 73 38 0 98 170 134 206 1.02e-16 79.7
Msa0878140 AT3G09370.3 47.945 73 38 0 98 170 142 214 1.03e-16 79.7
Msa0878140 AT5G11510.3 41.463 82 47 1 89 170 72 152 8.33e-16 77.4
Msa0878140 AT5G11510.1 41.463 82 47 1 89 170 72 152 8.33e-16 77.4
Msa0878140 AT5G11510.4 41.463 82 47 1 89 170 72 152 8.33e-16 77.4
Msa0878140 AT5G11510.2 41.463 82 47 1 89 170 72 152 1.08e-15 77.0
Msa0878140 AT5G11510.5 42.466 73 42 0 98 170 80 152 1.21e-15 76.6
Msa0878140 AT5G11050.1 49.315 73 37 0 98 170 104 176 1.34e-15 76.3
Msa0878140 AT4G32730.5 41.463 82 47 1 89 170 78 158 1.71e-15 76.3
Msa0878140 AT4G32730.4 41.463 82 47 1 89 170 78 158 1.71e-15 76.3
Msa0878140 AT4G32730.3 41.463 82 47 1 89 170 78 158 1.71e-15 76.3
Msa0878140 AT4G32730.2 41.463 82 47 1 89 170 78 158 1.71e-15 76.3
Msa0878140 AT4G32730.1 41.463 82 47 1 89 170 78 158 1.80e-15 76.3
Msa0878140 AT5G02320.1 42.466 73 42 0 98 170 126 198 1.26e-14 73.6
Msa0878140 AT5G02320.2 42.466 73 42 0 98 170 126 198 1.26e-14 73.6
Msa0878140 AT5G02320.3 42.466 73 42 0 98 170 66 138 1.48e-14 73.2
Msa0878140 AT5G62470.1 36.036 111 67 2 99 208 14 121 1.50e-14 72.8
Msa0878140 AT3G18100.1 44.444 72 40 0 99 170 546 617 2.64e-14 72.8
Msa0878140 AT3G18100.3 44.444 72 40 0 99 170 498 569 2.78e-14 72.8
Msa0878140 AT5G58850.1 41.379 87 51 0 80 166 86 172 2.93e-14 72.4
Msa0878140 AT3G18100.4 44.444 72 40 0 99 170 385 456 4.12e-14 72.0
Msa0878140 AT3G18100.2 44.444 72 40 0 99 170 333 404 4.44e-14 72.0
Msa0878140 AT3G27785.1 28.415 183 104 6 50 220 136 303 4.55e-14 71.6
Msa0878140 AT3G01140.2 30.822 146 94 3 99 240 14 156 4.69e-14 71.2
Msa0878140 AT5G40360.1 43.056 72 41 0 99 170 158 229 6.21e-14 70.9
Msa0878140 AT3G01140.1 30.822 146 94 3 99 240 57 199 6.41e-14 71.2
Msa0878140 AT3G47600.1 34.074 135 84 3 99 231 14 145 9.70e-14 70.1
Msa0878140 AT2G25230.1 45.070 71 37 2 101 170 28 97 9.87e-14 68.9
Msa0878140 AT1G18570.1 43.836 73 40 1 99 170 15 87 1.52e-13 69.7
Msa0878140 AT1G63910.1 33.333 135 83 4 99 232 14 142 3.07e-13 68.9
Msa0878140 AT5G62470.2 35.714 112 67 3 99 208 14 122 4.80e-13 68.6
Msa0878140 AT1G79180.1 45.205 73 39 1 99 170 16 88 4.93e-13 67.8
Msa0878140 AT3G28910.1 35.965 114 68 3 99 210 14 124 1.18e-12 67.0
Msa0878140 AT5G54230.1 43.836 73 40 1 99 170 14 86 1.28e-12 67.0
Msa0878140 AT4G17785.1 32.857 140 81 5 99 229 15 150 1.29e-12 67.0
Msa0878140 AT4G17785.2 32.857 140 81 5 99 229 15 150 1.37e-12 67.0
Msa0878140 AT3G12720.1 38.144 97 56 3 76 170 2 96 1.54e-12 66.6
Msa0878140 AT4G01680.3 41.096 73 42 1 99 170 14 86 2.22e-12 65.5
Msa0878140 AT4G05100.1 43.836 73 40 1 99 170 15 87 2.57e-12 66.2
Msa0878140 AT4G01680.1 41.096 73 42 1 99 170 14 86 2.61e-12 66.2
Msa0878140 AT4G28110.1 44.595 74 38 2 99 170 14 86 2.78e-12 65.5
Msa0878140 AT1G34670.1 43.836 73 40 1 99 170 14 86 3.29e-12 65.9
Msa0878140 AT4G18770.1 42.029 69 40 0 98 166 216 284 3.83e-12 65.9
Msa0878140 AT5G15310.1 43.243 74 39 2 99 170 14 86 4.35e-12 65.5
Msa0878140 AT4G26930.1 39.726 73 43 1 99 170 21 93 4.38e-12 65.9
Msa0878140 AT5G60890.1 42.466 73 41 1 99 170 14 86 4.52e-12 65.1
Msa0878140 AT5G15310.2 43.243 74 39 2 99 170 14 86 4.59e-12 65.1
Msa0878140 AT5G52600.1 38.462 91 50 2 81 170 1 86 5.98e-12 63.5
Msa0878140 AT1G74080.1 41.096 73 42 1 99 170 14 86 7.37e-12 64.7
Msa0878140 AT1G74650.1 34.615 104 64 2 99 201 14 114 7.48e-12 64.7
Msa0878140 AT3G48920.1 39.000 100 50 3 72 170 3 92 9.49e-12 63.9
Msa0878140 AT5G40330.1 42.466 73 41 1 99 170 14 86 1.07e-11 63.2
Msa0878140 AT3G08500.1 42.466 73 41 1 99 170 32 104 1.19e-11 64.3
Msa0878140 AT3G23250.1 33.784 148 87 5 99 238 14 158 1.22e-11 63.9
Msa0878140 AT5G15310.4 43.243 74 39 2 99 170 14 86 1.31e-11 63.2
Msa0878140 AT5G10280.1 43.243 74 39 2 99 170 14 86 1.33e-11 63.9
Msa0878140 AT3G53200.1 43.243 74 39 2 99 170 11 83 1.38e-11 63.2
Msa0878140 AT5G57620.1 45.714 70 36 2 99 166 14 83 1.42e-11 63.9
Msa0878140 AT5G14750.1 42.466 73 41 1 99 170 18 90 1.46e-11 62.4
Msa0878140 AT1G08810.1 31.250 144 93 4 99 239 14 154 1.46e-11 63.5
Msa0878140 AT2G26960.1 26.115 157 109 3 98 250 21 174 1.55e-11 64.3
Msa0878140 AT5G12870.1 41.096 73 42 1 99 170 20 92 1.69e-11 63.2
Msa0878140 AT1G56160.1 41.892 74 40 2 99 170 16 88 2.03e-11 63.2
Msa0878140 AT4G01680.2 37.647 85 40 2 99 170 14 98 2.11e-11 63.5
Msa0878140 AT3G11440.3 41.096 73 42 1 99 170 43 115 2.19e-11 63.9
Msa0878140 AT3G11440.4 41.096 73 42 1 99 170 43 115 2.19e-11 63.9
Msa0878140 AT3G11440.1 41.096 73 42 1 99 170 43 115 2.19e-11 63.9
Msa0878140 AT5G65230.1 44.595 74 38 2 99 170 14 86 2.57e-11 63.2
Msa0878140 AT3G11440.2 41.096 73 42 1 99 170 43 115 2.72e-11 63.5
Msa0878140 AT1G18710.1 39.726 73 43 1 99 170 14 86 3.13e-11 62.4
Msa0878140 AT3G02940.2 42.466 73 41 1 99 170 14 86 3.32e-11 62.8
Msa0878140 AT5G07690.1 42.466 73 41 1 99 170 14 86 3.36e-11 62.8
Msa0878140 AT3G02940.1 42.466 73 41 1 99 170 14 86 4.49e-11 62.4
Msa0878140 AT3G02940.3 42.466 73 41 1 99 170 14 86 4.49e-11 62.4
Msa0878140 AT4G21440.1 42.466 73 41 1 99 170 14 86 4.56e-11 62.4
Msa0878140 AT5G07700.1 42.466 73 41 1 99 170 14 86 4.70e-11 62.4
Msa0878140 AT5G07700.2 42.466 73 41 1 99 170 14 86 4.70e-11 62.4
Msa0878140 AT3G13890.1 37.805 82 41 2 99 170 14 95 4.81e-11 62.4
Msa0878140 AT5G40430.1 37.500 72 44 1 99 170 54 124 5.02e-11 61.6
Msa0878140 AT1G74430.1 41.096 73 42 1 99 170 14 86 5.19e-11 62.0
Msa0878140 AT5G61420.2 41.096 73 42 1 99 170 14 86 5.57e-11 62.4
Msa0878140 AT3G27920.1 36.735 98 52 3 84 177 7 98 5.69e-11 61.2
Msa0878140 AT5G16770.4 42.466 73 41 1 99 170 14 86 6.93e-11 62.0
Msa0878140 AT5G16770.3 42.466 73 41 1 99 170 14 86 6.93e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAACAATGAATCAATTT+TGG 0.098317 6_1:+18595584 Msa0878140:CDS
TTCATCTTCTACTCCTCTTT+TGG 0.139727 6_1:+18593827 Msa0878140:CDS
AAGGAAGAAAATGAGAAATT+TGG 0.160898 6_1:+18593996 Msa0878140:CDS
AAGGGAAAAGTTGCAGATTA+AGG 0.276686 6_1:+18594608 Msa0878140:intron
GTGTCATTTATTGACTTTCT+TGG 0.290615 6_1:+18595639 Msa0878140:CDS
TCTCATTGCACTGCAAATTC+TGG 0.302223 6_1:-18595460 None:intergenic
TTGCATGCTCATACACTTCA+TGG 0.308993 6_1:+18594697 Msa0878140:CDS
TGATGGTTATGGTTTCTCTT+TGG 0.310144 6_1:+18593767 Msa0878140:CDS
AAAGCTGCTCTATTGATTCT+AGG 0.313747 6_1:-18594649 None:intergenic
AACACCAAGCTTTCCATTAG+AGG 0.318928 6_1:+18594020 Msa0878140:CDS
TGGTCTCCAATGACCTCTAA+TGG 0.346646 6_1:-18594033 None:intergenic
ATGAATTTGGTCCTCACAAT+TGG 0.357978 6_1:+18594087 Msa0878140:CDS
AGGAAGAAAATGAGAAATTT+GGG 0.359459 6_1:+18593997 Msa0878140:CDS
GGAAAGTTCAAAATACCCTT+TGG 0.375377 6_1:+18593873 Msa0878140:CDS
GAAAGTTCAAAATACCCTTT+GGG 0.383315 6_1:+18593874 Msa0878140:CDS
AGCTTTCCATTAGAGGTCAT+TGG 0.384561 6_1:+18594027 Msa0878140:CDS
TGAGTTTGAATATGAATGAT+TGG 0.387864 6_1:-18595529 None:intergenic
ATAGAAAGAAAGGTAGAAGT+AGG 0.391467 6_1:+18595423 Msa0878140:CDS
CATATTGGTAACAATGAGTC+TGG 0.398380 6_1:+18593852 Msa0878140:CDS
AAATGTGAGAGATAAGATTA+AGG 0.412885 6_1:+18595617 Msa0878140:CDS
AACTTGAACAATGATGGTTA+TGG 0.426752 6_1:+18593756 Msa0878140:CDS
AGGCTTACTTATAGAAAGAA+AGG 0.428586 6_1:+18595413 Msa0878140:intron
AAGGTAGAAGTAGGGGACTA+TGG 0.428911 6_1:+18595432 Msa0878140:CDS
GATGAAGAAGGAAGTGGAGA+TGG 0.450833 6_1:-18593810 None:intergenic
TCACTAAACTTGAACAATGA+TGG 0.458857 6_1:+18593750 Msa0878140:CDS
GTAGAAGATGAAGAAGGAAG+TGG 0.470505 6_1:-18593816 None:intergenic
AGAAGGAAGTGGAGATGGAA+GGG 0.471954 6_1:-18593805 None:intergenic
TAGAAAGAAAGGTAGAAGTA+GGG 0.480588 6_1:+18595424 Msa0878140:CDS
TGACCATGCTCTCATTAGGA+TGG 0.490702 6_1:-18593917 None:intergenic
GTTCAAGTTTAGTGAACTCA+TGG 0.494602 6_1:-18593742 None:intergenic
TCTTGGAGTAGGTGATACAT+AGG 0.495278 6_1:+18595656 Msa0878140:CDS
GAACAAATACATGGAAGATC+GGG 0.507355 6_1:+18594122 Msa0878140:CDS
TTTATTGACTTTCTTGGAGT+AGG 0.507502 6_1:+18595645 Msa0878140:CDS
AAGAAGGAAGTGGAGATGGA+AGG 0.512851 6_1:-18593806 None:intergenic
TGAACAAATACATGGAAGAT+CGG 0.519885 6_1:+18594121 Msa0878140:CDS
TTGAATATGAATGATTGGAT+TGG 0.524412 6_1:-18595524 None:intergenic
ATGACCTCTAATGGAAAGCT+TGG 0.534815 6_1:-18594024 None:intergenic
AGAAAGAAAGGTAGAAGTAG+GGG 0.536632 6_1:+18595425 Msa0878140:CDS
CTTGGAGTAGGTGATACATA+GGG 0.552083 6_1:+18595657 Msa0878140:CDS
TTAAGCTTAGCATCTTCAGA+TGG 0.553691 6_1:-18594053 None:intergenic
AGAGGAGTAGAAGATGAAGA+AGG 0.558498 6_1:-18593822 None:intergenic
AGGTTGTTCTCAAGGTCACA+TGG 0.563554 6_1:+18595482 Msa0878140:CDS
TCATTAGGATGGATCACTGA+AGG 0.567180 6_1:-18593906 None:intergenic
AACATTGCTGAACAAATACA+TGG 0.572771 6_1:+18594113 Msa0878140:CDS
GCAATGAGAGGTTGTTCTCA+AGG 0.574721 6_1:+18595474 Msa0878140:CDS
CTTGTCAATGAAAGTTGACA+AGG 0.581911 6_1:+18593977 Msa0878140:CDS
TTACCAATATGACCCAAAAG+AGG 0.582661 6_1:-18593840 None:intergenic
GCAATGTTGTTCCAATTGTG+AGG 0.589775 6_1:-18594098 None:intergenic
CATTAGGATGGATCACTGAA+GGG 0.599580 6_1:-18593905 None:intergenic
GAAGGGTTAGAAATCCCAAA+GGG 0.605125 6_1:-18593888 None:intergenic
GATCCATCCTAATGAGAGCA+TGG 0.615775 6_1:+18593914 Msa0878140:CDS
CATGGGAAAGCTTAAGAGTG+TGG 0.638298 6_1:+18595500 Msa0878140:CDS
GGAAAAGTTGCAGATTAAGG+TGG 0.645857 6_1:+18594611 Msa0878140:CDS
AGAATTTGCAGTGCAATGAG+AGG 0.669530 6_1:+18595462 Msa0878140:CDS
TGAAGGGTTAGAAATCCCAA+AGG 0.675804 6_1:-18593889 None:intergenic
GGTTGTTCTCAAGGTCACAT+GGG 0.692971 6_1:+18595483 Msa0878140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGAATATTTTCAAA+AGG + chr6_1:18594293-18594312 Msa0878140:intron 10.0%
!! TATGTCAAATAAATTAATAT+AGG - chr6_1:18595349-18595368 None:intergenic 10.0%
!!! TTTTTGTGTTTTATTTTTTT+AGG + chr6_1:18595393-18595412 Msa0878140:intron 10.0%
!!! AAAAATTGAATATTTTCAAA+AGG + chr6_1:18594293-18594312 Msa0878140:intron 10.0%
!! TATGTCAAATAAATTAATAT+AGG - chr6_1:18595349-18595368 None:intergenic 10.0%
!!! TTTTTGTGTTTTATTTTTTT+AGG + chr6_1:18595393-18595412 Msa0878140:intron 10.0%
!!! AAAAATAATAAAGGGAATTT+TGG + chr6_1:18593939-18593958 Msa0878140:CDS 15.0%
!!! AAAATAATAAAGGGAATTTT+GGG + chr6_1:18593940-18593959 Msa0878140:CDS 15.0%
!!! TCATTTGTAATATTTTTTGA+AGG + chr6_1:18594536-18594555 Msa0878140:intron 15.0%
!!! AAAATTTTGAAGCAATTTAA+AGG - chr6_1:18595290-18595309 None:intergenic 15.0%
!!! AAAAATAATAAAGGGAATTT+TGG + chr6_1:18593939-18593958 Msa0878140:CDS 15.0%
!!! AAAATAATAAAGGGAATTTT+GGG + chr6_1:18593940-18593959 Msa0878140:CDS 15.0%
!!! TCATTTGTAATATTTTTTGA+AGG + chr6_1:18594536-18594555 Msa0878140:intron 15.0%
!!! AAAATTTTGAAGCAATTTAA+AGG - chr6_1:18595290-18595309 None:intergenic 15.0%
!!! AAATAATAAAGGGAATTTTG+GGG + chr6_1:18593941-18593960 Msa0878140:CDS 20.0%
!!! AAAAAACTTGTTGATGAATT+TGG + chr6_1:18594074-18594093 Msa0878140:CDS 20.0%
!!! AATTTGTTATGTTCTAGTTT+AGG - chr6_1:18594154-18594173 None:intergenic 20.0%
!! TTAATTACCATTATCACAAA+AGG - chr6_1:18594589-18594608 None:intergenic 20.0%
!!! TTTGTGATAATGGTAATTAA+AGG + chr6_1:18594589-18594608 Msa0878140:intron 20.0%
!!! TTGTGATAATGGTAATTAAA+GGG + chr6_1:18594590-18594609 Msa0878140:intron 20.0%
!! CAATGTAATACTACTATATT+TGG - chr6_1:18595084-18595103 None:intergenic 20.0%
!! CAAATATAGTAGTATTACAT+TGG + chr6_1:18595082-18595101 Msa0878140:intron 20.0%
!!! ATGAACAATGAATCAATTTT+GGG + chr6_1:18595585-18595604 Msa0878140:CDS 20.0%
!!! AAATAATAAAGGGAATTTTG+GGG + chr6_1:18593941-18593960 Msa0878140:CDS 20.0%
!!! AAAAAACTTGTTGATGAATT+TGG + chr6_1:18594074-18594093 Msa0878140:CDS 20.0%
!!! AATTTGTTATGTTCTAGTTT+AGG - chr6_1:18594154-18594173 None:intergenic 20.0%
!! TTAATTACCATTATCACAAA+AGG - chr6_1:18594589-18594608 None:intergenic 20.0%
!!! TTTGTGATAATGGTAATTAA+AGG + chr6_1:18594589-18594608 Msa0878140:intron 20.0%
!!! TTGTGATAATGGTAATTAAA+GGG + chr6_1:18594590-18594609 Msa0878140:intron 20.0%
!! CAATGTAATACTACTATATT+TGG - chr6_1:18595084-18595103 None:intergenic 20.0%
!! CAAATATAGTAGTATTACAT+TGG + chr6_1:18595082-18595101 Msa0878140:intron 20.0%
!!! ATGAACAATGAATCAATTTT+GGG + chr6_1:18595585-18595604 Msa0878140:CDS 20.0%
! AGCATGGTCAAAAATAATAA+AGG + chr6_1:18593930-18593949 Msa0878140:CDS 25.0%
! GCATGGTCAAAAATAATAAA+GGG + chr6_1:18593931-18593950 Msa0878140:CDS 25.0%
! AAGGAAGAAAATGAGAAATT+TGG + chr6_1:18593996-18594015 Msa0878140:CDS 25.0%
! AGGAAGAAAATGAGAAATTT+GGG + chr6_1:18593997-18594016 Msa0878140:CDS 25.0%
! ATTATAATCGCTGTTAAATG+CGG - chr6_1:18595261-18595280 None:intergenic 25.0%
! AAACACAAAAATCAACAACA+TGG - chr6_1:18595384-18595403 None:intergenic 25.0%
! TTGAATATGAATGATTGGAT+TGG - chr6_1:18595527-18595546 None:intergenic 25.0%
! TGAGTTTGAATATGAATGAT+TGG - chr6_1:18595532-18595551 None:intergenic 25.0%
!! CATGAACAATGAATCAATTT+TGG + chr6_1:18595584-18595603 Msa0878140:CDS 25.0%
! AAATGTGAGAGATAAGATTA+AGG + chr6_1:18595617-18595636 Msa0878140:CDS 25.0%
! AGCATGGTCAAAAATAATAA+AGG + chr6_1:18593930-18593949 Msa0878140:CDS 25.0%
! GCATGGTCAAAAATAATAAA+GGG + chr6_1:18593931-18593950 Msa0878140:CDS 25.0%
! AAGGAAGAAAATGAGAAATT+TGG + chr6_1:18593996-18594015 Msa0878140:CDS 25.0%
! AGGAAGAAAATGAGAAATTT+GGG + chr6_1:18593997-18594016 Msa0878140:CDS 25.0%
! ATTATAATCGCTGTTAAATG+CGG - chr6_1:18595261-18595280 None:intergenic 25.0%
! AAACACAAAAATCAACAACA+TGG - chr6_1:18595384-18595403 None:intergenic 25.0%
! TTGAATATGAATGATTGGAT+TGG - chr6_1:18595527-18595546 None:intergenic 25.0%
! TGAGTTTGAATATGAATGAT+TGG - chr6_1:18595532-18595551 None:intergenic 25.0%
!! CATGAACAATGAATCAATTT+TGG + chr6_1:18595584-18595603 Msa0878140:CDS 25.0%
! AAATGTGAGAGATAAGATTA+AGG + chr6_1:18595617-18595636 Msa0878140:CDS 25.0%
TCACTAAACTTGAACAATGA+TGG + chr6_1:18593750-18593769 Msa0878140:CDS 30.0%
AACTTGAACAATGATGGTTA+TGG + chr6_1:18593756-18593775 Msa0878140:CDS 30.0%
GAAAGTTCAAAATACCCTTT+GGG + chr6_1:18593874-18593893 Msa0878140:CDS 30.0%
AACATTGCTGAACAAATACA+TGG + chr6_1:18594113-18594132 Msa0878140:CDS 30.0%
TGAACAAATACATGGAAGAT+CGG + chr6_1:18594121-18594140 Msa0878140:CDS 30.0%
!! TATATCGATTCTAACGCAAT+TGG + chr6_1:18594392-18594411 Msa0878140:intron 30.0%
! TGAGTTTCCTTTTGTGATAA+TGG + chr6_1:18594579-18594598 Msa0878140:intron 30.0%
ATACACTTCATGGTAACAAA+TGG + chr6_1:18594707-18594726 Msa0878140:intron 30.0%
! GAATCATTTTCATGTGATCA+TGG + chr6_1:18594777-18594796 Msa0878140:intron 30.0%
TAGCTTTCTCTTTCTTGAAA+TGG - chr6_1:18594830-18594849 None:intergenic 30.0%
TAGCTACATTATTCTTTCCT+GGG - chr6_1:18594864-18594883 None:intergenic 30.0%
GTTGAGTTAGATTCATCAAA+CGG - chr6_1:18594907-18594926 None:intergenic 30.0%
CATACTCATTTGTGAATCAT+AGG - chr6_1:18594977-18594996 None:intergenic 30.0%
CATATGATAAGCTAAAGTGA+AGG - chr6_1:18595008-18595027 None:intergenic 30.0%
GTATTACATTGGAAATTGTG+CGG + chr6_1:18595093-18595112 Msa0878140:intron 30.0%
! TTACTCTTTTTGCACTTTTG+TGG - chr6_1:18595125-18595144 None:intergenic 30.0%
AGGCTTACTTATAGAAAGAA+AGG + chr6_1:18595413-18595432 Msa0878140:intron 30.0%
ATAGAAAGAAAGGTAGAAGT+AGG + chr6_1:18595423-18595442 Msa0878140:CDS 30.0%
TAGAAAGAAAGGTAGAAGTA+GGG + chr6_1:18595424-18595443 Msa0878140:CDS 30.0%
!! GTGTCATTTATTGACTTTCT+TGG + chr6_1:18595639-18595658 Msa0878140:CDS 30.0%
!! TTTATTGACTTTCTTGGAGT+AGG + chr6_1:18595645-18595664 Msa0878140:CDS 30.0%
TCACTAAACTTGAACAATGA+TGG + chr6_1:18593750-18593769 Msa0878140:CDS 30.0%
AACTTGAACAATGATGGTTA+TGG + chr6_1:18593756-18593775 Msa0878140:CDS 30.0%
GAAAGTTCAAAATACCCTTT+GGG + chr6_1:18593874-18593893 Msa0878140:CDS 30.0%
AACATTGCTGAACAAATACA+TGG + chr6_1:18594113-18594132 Msa0878140:CDS 30.0%
TGAACAAATACATGGAAGAT+CGG + chr6_1:18594121-18594140 Msa0878140:CDS 30.0%
!! TATATCGATTCTAACGCAAT+TGG + chr6_1:18594392-18594411 Msa0878140:intron 30.0%
! TGAGTTTCCTTTTGTGATAA+TGG + chr6_1:18594579-18594598 Msa0878140:intron 30.0%
ATACACTTCATGGTAACAAA+TGG + chr6_1:18594707-18594726 Msa0878140:intron 30.0%
! GAATCATTTTCATGTGATCA+TGG + chr6_1:18594777-18594796 Msa0878140:intron 30.0%
TAGCTTTCTCTTTCTTGAAA+TGG - chr6_1:18594830-18594849 None:intergenic 30.0%
TAGCTACATTATTCTTTCCT+GGG - chr6_1:18594864-18594883 None:intergenic 30.0%
GTTGAGTTAGATTCATCAAA+CGG - chr6_1:18594907-18594926 None:intergenic 30.0%
CATACTCATTTGTGAATCAT+AGG - chr6_1:18594977-18594996 None:intergenic 30.0%
CATATGATAAGCTAAAGTGA+AGG - chr6_1:18595008-18595027 None:intergenic 30.0%
GTATTACATTGGAAATTGTG+CGG + chr6_1:18595093-18595112 Msa0878140:intron 30.0%
! TTACTCTTTTTGCACTTTTG+TGG - chr6_1:18595125-18595144 None:intergenic 30.0%
AGGCTTACTTATAGAAAGAA+AGG + chr6_1:18595413-18595432 Msa0878140:intron 30.0%
ATAGAAAGAAAGGTAGAAGT+AGG + chr6_1:18595423-18595442 Msa0878140:CDS 30.0%
TAGAAAGAAAGGTAGAAGTA+GGG + chr6_1:18595424-18595443 Msa0878140:CDS 30.0%
!! GTGTCATTTATTGACTTTCT+TGG + chr6_1:18595639-18595658 Msa0878140:CDS 30.0%
!! TTTATTGACTTTCTTGGAGT+AGG + chr6_1:18595645-18595664 Msa0878140:CDS 30.0%
TGATGGTTATGGTTTCTCTT+TGG + chr6_1:18593767-18593786 Msa0878140:CDS 35.0%
! TTCATCTTCTACTCCTCTTT+TGG + chr6_1:18593827-18593846 Msa0878140:CDS 35.0%
! TCATCTTCTACTCCTCTTTT+GGG + chr6_1:18593828-18593847 Msa0878140:CDS 35.0%
TTACCAATATGACCCAAAAG+AGG - chr6_1:18593843-18593862 None:intergenic 35.0%
! CATATTGGTAACAATGAGTC+TGG + chr6_1:18593852-18593871 Msa0878140:CDS 35.0%
GGAAAGTTCAAAATACCCTT+TGG + chr6_1:18593873-18593892 Msa0878140:CDS 35.0%
! TTTTTGACCATGCTCTCATT+AGG - chr6_1:18593924-18593943 None:intergenic 35.0%
CTTGTCAATGAAAGTTGACA+AGG + chr6_1:18593977-18593996 Msa0878140:CDS 35.0%
TTAAGCTTAGCATCTTCAGA+TGG - chr6_1:18594056-18594075 None:intergenic 35.0%
ATGAATTTGGTCCTCACAAT+TGG + chr6_1:18594087-18594106 Msa0878140:CDS 35.0%
GAACAAATACATGGAAGATC+GGG + chr6_1:18594122-18594141 Msa0878140:CDS 35.0%
AAGGGAAAAGTTGCAGATTA+AGG + chr6_1:18594608-18594627 Msa0878140:intron 35.0%
!! AAAGCTGCTCTATTGATTCT+AGG - chr6_1:18594652-18594671 None:intergenic 35.0%
CACATTTGCAAATTCTTTCC+TGG + chr6_1:18594733-18594752 Msa0878140:intron 35.0%
TTTGCAAATTCTTTCCTGGA+AGG + chr6_1:18594737-18594756 Msa0878140:intron 35.0%
! ATTTTCATGTGATCATGGCT+AGG + chr6_1:18594782-18594801 Msa0878140:intron 35.0%
AAGCTAACATTTCAAATCCC+AGG + chr6_1:18594844-18594863 Msa0878140:intron 35.0%
CTAGCTACATTATTCTTTCC+TGG - chr6_1:18594865-18594884 None:intergenic 35.0%
! TTCATCAAACGGATTTGTGA+TGG - chr6_1:18594896-18594915 None:intergenic 35.0%
! TAGGCTTGGTAATTAAGCAA+AGG - chr6_1:18594958-18594977 None:intergenic 35.0%
TCATTTGTGAATCATAGGCT+TGG - chr6_1:18594972-18594991 None:intergenic 35.0%
AAATGCTAACTAGTGTCACA+GGG + chr6_1:18595042-18595061 Msa0878140:intron 35.0%
GGTTAGCATGACTCAAATAT+AGG + chr6_1:18595200-18595219 Msa0878140:intron 35.0%
ATGACTCAAATATAGGTCTG+CGG + chr6_1:18595207-18595226 Msa0878140:intron 35.0%
GCAACTTCAATTGAATATCG+TGG - chr6_1:18595233-18595252 None:intergenic 35.0%
AGAAAGAAAGGTAGAAGTAG+GGG + chr6_1:18595425-18595444 Msa0878140:CDS 35.0%
TGATGGTTATGGTTTCTCTT+TGG + chr6_1:18593767-18593786 Msa0878140:CDS 35.0%
! TTCATCTTCTACTCCTCTTT+TGG + chr6_1:18593827-18593846 Msa0878140:CDS 35.0%
! TCATCTTCTACTCCTCTTTT+GGG + chr6_1:18593828-18593847 Msa0878140:CDS 35.0%
TTACCAATATGACCCAAAAG+AGG - chr6_1:18593843-18593862 None:intergenic 35.0%
! CATATTGGTAACAATGAGTC+TGG + chr6_1:18593852-18593871 Msa0878140:CDS 35.0%
GGAAAGTTCAAAATACCCTT+TGG + chr6_1:18593873-18593892 Msa0878140:CDS 35.0%
! TTTTTGACCATGCTCTCATT+AGG - chr6_1:18593924-18593943 None:intergenic 35.0%
CTTGTCAATGAAAGTTGACA+AGG + chr6_1:18593977-18593996 Msa0878140:CDS 35.0%
TTAAGCTTAGCATCTTCAGA+TGG - chr6_1:18594056-18594075 None:intergenic 35.0%
ATGAATTTGGTCCTCACAAT+TGG + chr6_1:18594087-18594106 Msa0878140:CDS 35.0%
GAACAAATACATGGAAGATC+GGG + chr6_1:18594122-18594141 Msa0878140:CDS 35.0%
AAGGGAAAAGTTGCAGATTA+AGG + chr6_1:18594608-18594627 Msa0878140:intron 35.0%
!! AAAGCTGCTCTATTGATTCT+AGG - chr6_1:18594652-18594671 None:intergenic 35.0%
CACATTTGCAAATTCTTTCC+TGG + chr6_1:18594733-18594752 Msa0878140:intron 35.0%
TTTGCAAATTCTTTCCTGGA+AGG + chr6_1:18594737-18594756 Msa0878140:intron 35.0%
! ATTTTCATGTGATCATGGCT+AGG + chr6_1:18594782-18594801 Msa0878140:intron 35.0%
AAGCTAACATTTCAAATCCC+AGG + chr6_1:18594844-18594863 Msa0878140:intron 35.0%
CTAGCTACATTATTCTTTCC+TGG - chr6_1:18594865-18594884 None:intergenic 35.0%
! TTCATCAAACGGATTTGTGA+TGG - chr6_1:18594896-18594915 None:intergenic 35.0%
! TAGGCTTGGTAATTAAGCAA+AGG - chr6_1:18594958-18594977 None:intergenic 35.0%
TCATTTGTGAATCATAGGCT+TGG - chr6_1:18594972-18594991 None:intergenic 35.0%
AAATGCTAACTAGTGTCACA+GGG + chr6_1:18595042-18595061 Msa0878140:intron 35.0%
GGTTAGCATGACTCAAATAT+AGG + chr6_1:18595200-18595219 Msa0878140:intron 35.0%
ATGACTCAAATATAGGTCTG+CGG + chr6_1:18595207-18595226 Msa0878140:intron 35.0%
GCAACTTCAATTGAATATCG+TGG - chr6_1:18595233-18595252 None:intergenic 35.0%
AGAAAGAAAGGTAGAAGTAG+GGG + chr6_1:18595425-18595444 Msa0878140:CDS 35.0%
GTAGAAGATGAAGAAGGAAG+TGG - chr6_1:18593819-18593838 None:intergenic 40.0%
AGAGGAGTAGAAGATGAAGA+AGG - chr6_1:18593825-18593844 None:intergenic 40.0%
!! ACTCCTCTTTTGGGTCATAT+TGG + chr6_1:18593837-18593856 Msa0878140:CDS 40.0%
GAAGGGTTAGAAATCCCAAA+GGG - chr6_1:18593891-18593910 None:intergenic 40.0%
TGAAGGGTTAGAAATCCCAA+AGG - chr6_1:18593892-18593911 None:intergenic 40.0%
CATTAGGATGGATCACTGAA+GGG - chr6_1:18593908-18593927 None:intergenic 40.0%
TCATTAGGATGGATCACTGA+AGG - chr6_1:18593909-18593928 None:intergenic 40.0%
AACACCAAGCTTTCCATTAG+AGG + chr6_1:18594020-18594039 Msa0878140:CDS 40.0%
ATGACCTCTAATGGAAAGCT+TGG - chr6_1:18594027-18594046 None:intergenic 40.0%
AGCTTTCCATTAGAGGTCAT+TGG + chr6_1:18594027-18594046 Msa0878140:CDS 40.0%
GCAATGTTGTTCCAATTGTG+AGG - chr6_1:18594101-18594120 None:intergenic 40.0%
TCGATTCTAACGCAATTGGT+TGG + chr6_1:18594396-18594415 Msa0878140:intron 40.0%
GGAAAAGTTGCAGATTAAGG+TGG + chr6_1:18594611-18594630 Msa0878140:CDS 40.0%
! CAATAGAGCAGCTTTTAGTG+AGG + chr6_1:18594657-18594676 Msa0878140:CDS 40.0%
! AGCTTTTAGTGAGGAAGAAG+AGG + chr6_1:18594666-18594685 Msa0878140:CDS 40.0%
TTGCATGCTCATACACTTCA+TGG + chr6_1:18594697-18594716 Msa0878140:CDS 40.0%
GAAATGCTAACTAGTGTCAC+AGG + chr6_1:18595041-18595060 Msa0878140:intron 40.0%
TCTCATTGCACTGCAAATTC+TGG - chr6_1:18595463-18595482 None:intergenic 40.0%
AGAATTTGCAGTGCAATGAG+AGG + chr6_1:18595462-18595481 Msa0878140:CDS 40.0%
GTAGAAGATGAAGAAGGAAG+TGG - chr6_1:18593819-18593838 None:intergenic 40.0%
AGAGGAGTAGAAGATGAAGA+AGG - chr6_1:18593825-18593844 None:intergenic 40.0%
!! ACTCCTCTTTTGGGTCATAT+TGG + chr6_1:18593837-18593856 Msa0878140:CDS 40.0%
GAAGGGTTAGAAATCCCAAA+GGG - chr6_1:18593891-18593910 None:intergenic 40.0%
TGAAGGGTTAGAAATCCCAA+AGG - chr6_1:18593892-18593911 None:intergenic 40.0%
CATTAGGATGGATCACTGAA+GGG - chr6_1:18593908-18593927 None:intergenic 40.0%
TCATTAGGATGGATCACTGA+AGG - chr6_1:18593909-18593928 None:intergenic 40.0%
AACACCAAGCTTTCCATTAG+AGG + chr6_1:18594020-18594039 Msa0878140:CDS 40.0%
ATGACCTCTAATGGAAAGCT+TGG - chr6_1:18594027-18594046 None:intergenic 40.0%
AGCTTTCCATTAGAGGTCAT+TGG + chr6_1:18594027-18594046 Msa0878140:CDS 40.0%
GCAATGTTGTTCCAATTGTG+AGG - chr6_1:18594101-18594120 None:intergenic 40.0%
TCGATTCTAACGCAATTGGT+TGG + chr6_1:18594396-18594415 Msa0878140:intron 40.0%
GGAAAAGTTGCAGATTAAGG+TGG + chr6_1:18594611-18594630 Msa0878140:CDS 40.0%
! CAATAGAGCAGCTTTTAGTG+AGG + chr6_1:18594657-18594676 Msa0878140:CDS 40.0%
! AGCTTTTAGTGAGGAAGAAG+AGG + chr6_1:18594666-18594685 Msa0878140:CDS 40.0%
TTGCATGCTCATACACTTCA+TGG + chr6_1:18594697-18594716 Msa0878140:CDS 40.0%
GAAATGCTAACTAGTGTCAC+AGG + chr6_1:18595041-18595060 Msa0878140:intron 40.0%
TCTCATTGCACTGCAAATTC+TGG - chr6_1:18595463-18595482 None:intergenic 40.0%
AGAATTTGCAGTGCAATGAG+AGG + chr6_1:18595462-18595481 Msa0878140:CDS 40.0%
AGAAGGAAGTGGAGATGGAA+GGG - chr6_1:18593808-18593827 None:intergenic 45.0%
AAGAAGGAAGTGGAGATGGA+AGG - chr6_1:18593809-18593828 None:intergenic 45.0%
GATGAAGAAGGAAGTGGAGA+TGG - chr6_1:18593813-18593832 None:intergenic 45.0%
GATCCATCCTAATGAGAGCA+TGG + chr6_1:18593914-18593933 Msa0878140:CDS 45.0%
TGACCATGCTCTCATTAGGA+TGG - chr6_1:18593920-18593939 None:intergenic 45.0%
TGGTCTCCAATGACCTCTAA+TGG - chr6_1:18594036-18594055 None:intergenic 45.0%
TGATCATGGCTAGGAAGCAA+AGG + chr6_1:18594791-18594810 Msa0878140:intron 45.0%
GATCATGGCTAGGAAGCAAA+GGG + chr6_1:18594792-18594811 Msa0878140:intron 45.0%
CCTAGTAGTGAGGTTGAGAT+TGG - chr6_1:18594935-18594954 None:intergenic 45.0%
CCAATCTCAACCTCACTACT+AGG + chr6_1:18594932-18594951 Msa0878140:intron 45.0%
TAAGCAAAGGCCTAGTAGTG+AGG - chr6_1:18594945-18594964 None:intergenic 45.0%
AAGGTAGAAGTAGGGGACTA+TGG + chr6_1:18595432-18595451 Msa0878140:CDS 45.0%
GCAATGAGAGGTTGTTCTCA+AGG + chr6_1:18595474-18595493 Msa0878140:CDS 45.0%
AGGTTGTTCTCAAGGTCACA+TGG + chr6_1:18595482-18595501 Msa0878140:CDS 45.0%
GGTTGTTCTCAAGGTCACAT+GGG + chr6_1:18595483-18595502 Msa0878140:CDS 45.0%
CATGGGAAAGCTTAAGAGTG+TGG + chr6_1:18595500-18595519 Msa0878140:CDS 45.0%
AGAAGGAAGTGGAGATGGAA+GGG - chr6_1:18593808-18593827 None:intergenic 45.0%
AAGAAGGAAGTGGAGATGGA+AGG - chr6_1:18593809-18593828 None:intergenic 45.0%
GATGAAGAAGGAAGTGGAGA+TGG - chr6_1:18593813-18593832 None:intergenic 45.0%
GATCCATCCTAATGAGAGCA+TGG + chr6_1:18593914-18593933 Msa0878140:CDS 45.0%
TGACCATGCTCTCATTAGGA+TGG - chr6_1:18593920-18593939 None:intergenic 45.0%
TGGTCTCCAATGACCTCTAA+TGG - chr6_1:18594036-18594055 None:intergenic 45.0%
TGATCATGGCTAGGAAGCAA+AGG + chr6_1:18594791-18594810 Msa0878140:intron 45.0%
GATCATGGCTAGGAAGCAAA+GGG + chr6_1:18594792-18594811 Msa0878140:intron 45.0%
CCTAGTAGTGAGGTTGAGAT+TGG - chr6_1:18594935-18594954 None:intergenic 45.0%
CCAATCTCAACCTCACTACT+AGG + chr6_1:18594932-18594951 Msa0878140:intron 45.0%
TAAGCAAAGGCCTAGTAGTG+AGG - chr6_1:18594945-18594964 None:intergenic 45.0%
AAGGTAGAAGTAGGGGACTA+TGG + chr6_1:18595432-18595451 Msa0878140:CDS 45.0%
GCAATGAGAGGTTGTTCTCA+AGG + chr6_1:18595474-18595493 Msa0878140:CDS 45.0%
AGGTTGTTCTCAAGGTCACA+TGG + chr6_1:18595482-18595501 Msa0878140:CDS 45.0%
GGTTGTTCTCAAGGTCACAT+GGG + chr6_1:18595483-18595502 Msa0878140:CDS 45.0%
CATGGGAAAGCTTAAGAGTG+TGG + chr6_1:18595500-18595519 Msa0878140:CDS 45.0%
AGTGCATTGTCTGTCCTTCC+AGG - chr6_1:18594754-18594773 None:intergenic 50.0%
GTCATGCTAACCAGTGTCCT+CGG - chr6_1:18595192-18595211 None:intergenic 50.0%
AGTGCATTGTCTGTCCTTCC+AGG - chr6_1:18594754-18594773 None:intergenic 50.0%
GTCATGCTAACCAGTGTCCT+CGG - chr6_1:18595192-18595211 None:intergenic 50.0%
CTTCTTCAACCAGTGCTCCG+AGG + chr6_1:18595172-18595191 Msa0878140:intron 55.0%
CTTCTTCAACCAGTGCTCCG+AGG + chr6_1:18595172-18595191 Msa0878140:intron 55.0%
AACCAGTGCTCCGAGGACAC+TGG + chr6_1:18595179-18595198 Msa0878140:intron 60.0%
AACCAGTGTCCTCGGAGCAC+TGG - chr6_1:18595184-18595203 None:intergenic 60.0%
AACCAGTGCTCCGAGGACAC+TGG + chr6_1:18595179-18595198 Msa0878140:intron 60.0%
AACCAGTGTCCTCGGAGCAC+TGG - chr6_1:18595184-18595203 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 18593744 18595677 18593744 ID=Msa0878140;Name=Msa0878140
chr6_1 mRNA 18593744 18595677 18593744 ID=Msa0878140-mRNA-1;Parent=Msa0878140;Name=Msa0878140-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|256
chr6_1 exon 18593744 18594143 18593744 ID=Msa0878140-mRNA-1:exon:5055;Parent=Msa0878140-mRNA-1
chr6_1 exon 18594611 18594718 18594611 ID=Msa0878140-mRNA-1:exon:5056;Parent=Msa0878140-mRNA-1
chr6_1 exon 18595415 18595677 18595415 ID=Msa0878140-mRNA-1:exon:5057;Parent=Msa0878140-mRNA-1
chr6_1 CDS 18593744 18594143 18593744 ID=Msa0878140-mRNA-1:cds;Parent=Msa0878140-mRNA-1
chr6_1 CDS 18594611 18594718 18594611 ID=Msa0878140-mRNA-1:cds;Parent=Msa0878140-mRNA-1
chr6_1 CDS 18595415 18595677 18595415 ID=Msa0878140-mRNA-1:cds;Parent=Msa0878140-mRNA-1
Gene Sequence

>Msa0878140

ATGAGTTCACTAAACTTGAACAATGATGGTTATGGTTTCTCTTTGGACTTGAATATTTCTTCCCTTCCATCTCCACTTCCTTCTTCATCTTCTACTCCTCTTTTGGGTCATATTGGTAACAATGAGTCTGGAAAGTTCAAAATACCCTTTGGGATTTCTAACCCTTCAGTGATCCATCCTAATGAGAGCATGGTCAAAAATAATAAAGGGAATTTTGGGGATGAGAGAAAGAACTTGTCAATGAAAGTTGACAAGGAAGAAAATGAGAAATTTGGGAACACCAAGCTTTCCATTAGAGGTCATTGGAGACCATCTGAAGATGCTAAGCTTAAAAAACTTGTTGATGAATTTGGTCCTCACAATTGGAACAACATTGCTGAACAAATACATGGAAGATCGGGGAAAAGTTGCAGATTAAGGTGGTGTAATCAGCTAGATCCTAGAATCAATAGAGCAGCTTTTAGTGAGGAAGAAGAGGAGAAGCTTTTGCATGCTCATACACTTCATGGCTTACTTATAGAAAGAAAGGTAGAAGTAGGGGACTATGGTTTTGCCAGAATTTGCAGTGCAATGAGAGGTTGTTCTCAAGGTCACATGGGAAAGCTTAAGAGTGTGGACCAATCCAATCATTCATATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCAACAAACATGAACAATGAATCAATTTTGGGAGAAAGTGAAAATGTGAGAGATAAGATTAAGGTGTCATTTATTGACTTTCTTGGAGTAGGTGATACATAG
Protein sequence

>Msa0878140

MSSLNLNNDGYGFSLDLNISSLPSPLPSSSSTPLLGHIGNNESGKFKIPFGISNPSVIHPNESMVKNNKGNFGDERKNLSMKVDKEENEKFGNTKLSIRGHWRPSEDAKLKKLVDEFGPHNWNNIAEQIHGRSGKSCRLRWCNQLDPRINRAAFSEEEEEKLLHAHTLHGLLIERKVEVGDYGFARICSAMRGCSQGHMGKLKSVDQSNHSYSNSEVSVSESVATNMNNESILGESENVRDKIKVSFIDFLGVGDT*