Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878190 | XP_013451512.1 | 89.645 | 338 | 26 | 2 | 1 | 338 | 1 | 329 | 0.0 | 611 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878190 | sp|Q8LFV3|CDF3_ARATH | 47.368 | 152 | 62 | 3 | 45 | 196 | 71 | 204 | 3.37e-37 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878190 | A0A072UI93 | 89.645 | 338 | 26 | 2 | 1 | 338 | 1 | 329 | 0.0 | 611 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0878190 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878190 | MtrunA17_Chr6g0460721 | 89.645 | 338 | 26 | 2 | 1 | 338 | 1 | 329 | 0.0 | 611 |
| Msa0878190 | MtrunA17_Chr6g0460731 | 75.367 | 341 | 70 | 2 | 1 | 327 | 1 | 341 | 0.0 | 513 |
| Msa0878190 | MtrunA17_Chr7g0254161 | 48.555 | 346 | 140 | 9 | 10 | 337 | 8 | 333 | 1.06e-94 | 288 |
| Msa0878190 | MtrunA17_Chr7g0217581 | 52.113 | 142 | 56 | 2 | 48 | 189 | 191 | 320 | 6.81e-43 | 156 |
| Msa0878190 | MtrunA17_Chr4g0042481 | 63.889 | 108 | 37 | 2 | 51 | 157 | 85 | 191 | 1.44e-41 | 150 |
| Msa0878190 | MtrunA17_Chr3g0092111 | 37.729 | 273 | 130 | 10 | 48 | 319 | 105 | 338 | 1.94e-40 | 147 |
| Msa0878190 | MtrunA17_Chr6g0453321 | 57.759 | 116 | 45 | 2 | 47 | 161 | 96 | 208 | 1.05e-39 | 146 |
| Msa0878190 | MtrunA17_Chr8g0355261 | 38.916 | 203 | 94 | 4 | 10 | 183 | 11 | 212 | 7.07e-36 | 134 |
| Msa0878190 | MtrunA17_Chr5g0417571 | 51.351 | 111 | 45 | 2 | 47 | 151 | 99 | 206 | 7.11e-31 | 119 |
| Msa0878190 | MtrunA17_Chr2g0283811 | 74.194 | 62 | 16 | 0 | 81 | 142 | 39 | 100 | 4.54e-29 | 109 |
| Msa0878190 | MtrunA17_Chr5g0417601 | 50.476 | 105 | 49 | 1 | 46 | 150 | 100 | 201 | 3.51e-27 | 110 |
| Msa0878190 | MtrunA17_Chr5g0417551 | 53.061 | 98 | 41 | 2 | 45 | 142 | 88 | 180 | 2.06e-26 | 107 |
| Msa0878190 | MtrunA17_Chr8g0346551 | 63.492 | 63 | 23 | 0 | 84 | 146 | 19 | 81 | 1.15e-25 | 103 |
| Msa0878190 | MtrunA17_Chr5g0417561 | 52.041 | 98 | 42 | 2 | 45 | 142 | 80 | 172 | 1.27e-25 | 105 |
| Msa0878190 | MtrunA17_Chr8g0374251 | 42.727 | 110 | 60 | 1 | 89 | 195 | 68 | 177 | 2.27e-25 | 104 |
| Msa0878190 | MtrunA17_Chr3g0127201 | 59.155 | 71 | 29 | 0 | 73 | 143 | 11 | 81 | 3.72e-25 | 102 |
| Msa0878190 | MtrunA17_Chr4g0047001 | 49.474 | 95 | 37 | 2 | 61 | 144 | 16 | 110 | 4.82e-25 | 104 |
| Msa0878190 | MtrunA17_Chr8g0367161 | 48.936 | 94 | 35 | 2 | 51 | 144 | 7 | 87 | 6.75e-25 | 103 |
| Msa0878190 | MtrunA17_Chr2g0326001 | 55.844 | 77 | 33 | 1 | 68 | 143 | 18 | 94 | 1.57e-24 | 101 |
| Msa0878190 | MtrunA17_Chr4g0010151 | 62.903 | 62 | 23 | 0 | 82 | 143 | 75 | 136 | 1.59e-24 | 102 |
| Msa0878190 | MtrunA17_Chr4g0030051 | 57.895 | 76 | 31 | 1 | 67 | 141 | 18 | 93 | 3.46e-24 | 100 |
| Msa0878190 | MtrunA17_Chr2g0308011 | 75.510 | 49 | 12 | 0 | 89 | 137 | 37 | 85 | 6.33e-24 | 97.8 |
| Msa0878190 | MtrunA17_Chr8g0374111 | 58.904 | 73 | 29 | 1 | 89 | 161 | 29 | 100 | 6.59e-24 | 98.2 |
| Msa0878190 | MtrunA17_Chr2g0328021 | 47.423 | 97 | 51 | 0 | 76 | 172 | 49 | 145 | 6.89e-24 | 99.4 |
| Msa0878190 | MtrunA17_Chr4g0031411 | 63.492 | 63 | 22 | 1 | 82 | 143 | 68 | 130 | 1.29e-23 | 99.4 |
| Msa0878190 | MtrunA17_Chr2g0282051 | 73.214 | 56 | 14 | 1 | 89 | 144 | 46 | 100 | 2.62e-23 | 97.4 |
| Msa0878190 | MtrunA17_Chr1g0188851 | 50.000 | 80 | 35 | 1 | 67 | 141 | 16 | 95 | 4.27e-23 | 97.1 |
| Msa0878190 | MtrunA17_Chr4g0047761 | 52.747 | 91 | 27 | 2 | 69 | 144 | 37 | 126 | 4.47e-23 | 97.8 |
| Msa0878190 | MtrunA17_Chr2g0282441 | 59.375 | 64 | 26 | 0 | 77 | 140 | 13 | 76 | 8.60e-23 | 97.1 |
| Msa0878190 | MtrunA17_Chr4g0061761 | 67.925 | 53 | 17 | 0 | 87 | 139 | 38 | 90 | 1.01e-22 | 96.7 |
| Msa0878190 | MtrunA17_Chr7g0237921 | 55.556 | 72 | 30 | 1 | 74 | 143 | 59 | 130 | 1.34e-22 | 96.7 |
| Msa0878190 | MtrunA17_Chr8g0341671 | 69.231 | 52 | 16 | 0 | 89 | 140 | 20 | 71 | 1.83e-22 | 94.0 |
| Msa0878190 | MtrunA17_Chr7g0223311 | 70.909 | 55 | 15 | 1 | 90 | 143 | 78 | 132 | 8.01e-22 | 95.1 |
| Msa0878190 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 85 | 139 | 39 | 93 | 1.19e-21 | 94.0 |
| Msa0878190 | MtrunA17_Chr3g0126201 | 56.164 | 73 | 30 | 1 | 73 | 143 | 33 | 105 | 1.56e-21 | 93.6 |
| Msa0878190 | MtrunA17_Chr2g0282511 | 71.429 | 49 | 14 | 0 | 89 | 137 | 45 | 93 | 2.08e-21 | 92.8 |
| Msa0878190 | MtrunA17_Chr1g0177251 | 66.038 | 53 | 18 | 0 | 91 | 143 | 14 | 66 | 7.98e-21 | 90.9 |
| Msa0878190 | MtrunA17_Chr3g0117601 | 58.065 | 62 | 25 | 1 | 79 | 139 | 50 | 111 | 1.06e-20 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878190 | AT3G47500.1 | 47.368 | 152 | 62 | 3 | 45 | 196 | 71 | 204 | 3.43e-38 | 141 |
| Msa0878190 | AT5G39660.3 | 57.391 | 115 | 36 | 2 | 55 | 156 | 92 | 206 | 1.81e-37 | 139 |
| Msa0878190 | AT5G39660.1 | 57.391 | 115 | 36 | 2 | 55 | 156 | 92 | 206 | 1.81e-37 | 139 |
| Msa0878190 | AT5G39660.2 | 57.391 | 115 | 36 | 2 | 55 | 156 | 92 | 206 | 1.81e-37 | 139 |
| Msa0878190 | AT1G26790.1 | 46.988 | 166 | 65 | 5 | 9 | 151 | 10 | 175 | 1.03e-34 | 130 |
| Msa0878190 | AT5G62430.1 | 63.043 | 92 | 29 | 2 | 68 | 154 | 30 | 121 | 2.41e-34 | 128 |
| Msa0878190 | AT1G69570.1 | 49.593 | 123 | 41 | 2 | 77 | 198 | 120 | 222 | 1.51e-32 | 125 |
| Msa0878190 | AT2G34140.1 | 56.522 | 92 | 27 | 1 | 64 | 142 | 20 | 111 | 1.86e-32 | 119 |
| Msa0878190 | AT1G29160.1 | 76.667 | 60 | 14 | 0 | 83 | 142 | 56 | 115 | 1.54e-30 | 114 |
| Msa0878190 | AT3G55370.1 | 57.143 | 70 | 30 | 0 | 85 | 154 | 72 | 141 | 5.16e-25 | 103 |
| Msa0878190 | AT3G55370.2 | 57.143 | 70 | 30 | 0 | 85 | 154 | 72 | 141 | 6.04e-25 | 103 |
| Msa0878190 | AT3G55370.3 | 57.143 | 70 | 30 | 0 | 85 | 154 | 117 | 186 | 1.18e-24 | 103 |
| Msa0878190 | AT2G28810.2 | 41.414 | 99 | 55 | 1 | 45 | 140 | 30 | 128 | 5.25e-24 | 100 |
| Msa0878190 | AT2G28810.1 | 41.414 | 99 | 55 | 1 | 45 | 140 | 47 | 145 | 7.44e-24 | 100 |
| Msa0878190 | AT5G60200.1 | 59.375 | 64 | 26 | 0 | 83 | 146 | 49 | 112 | 7.78e-24 | 99.0 |
| Msa0878190 | AT1G51700.1 | 55.714 | 70 | 29 | 1 | 71 | 140 | 17 | 84 | 7.89e-24 | 97.4 |
| Msa0878190 | AT3G21270.1 | 71.698 | 53 | 15 | 0 | 89 | 141 | 29 | 81 | 8.66e-24 | 97.4 |
| Msa0878190 | AT5G60850.1 | 70.909 | 55 | 16 | 0 | 89 | 143 | 51 | 105 | 1.01e-23 | 99.8 |
| Msa0878190 | AT4G24060.1 | 60.938 | 64 | 25 | 0 | 80 | 143 | 44 | 107 | 1.49e-23 | 99.8 |
| Msa0878190 | AT3G61850.2 | 63.333 | 60 | 22 | 0 | 84 | 143 | 57 | 116 | 2.01e-23 | 98.2 |
| Msa0878190 | AT3G61850.3 | 63.333 | 60 | 22 | 0 | 84 | 143 | 57 | 116 | 2.01e-23 | 98.2 |
| Msa0878190 | AT2G37590.1 | 62.712 | 59 | 22 | 0 | 85 | 143 | 85 | 143 | 2.38e-23 | 99.0 |
| Msa0878190 | AT3G61850.1 | 63.333 | 60 | 22 | 0 | 84 | 143 | 69 | 128 | 2.65e-23 | 98.2 |
| Msa0878190 | AT1G28310.1 | 67.857 | 56 | 18 | 0 | 89 | 144 | 27 | 82 | 2.90e-23 | 98.6 |
| Msa0878190 | AT1G28310.2 | 67.857 | 56 | 18 | 0 | 89 | 144 | 51 | 106 | 3.63e-23 | 98.6 |
| Msa0878190 | AT3G61850.5 | 63.333 | 60 | 22 | 0 | 84 | 143 | 57 | 116 | 4.06e-23 | 98.2 |
| Msa0878190 | AT3G61850.4 | 63.333 | 60 | 22 | 0 | 84 | 143 | 69 | 128 | 4.31e-23 | 98.2 |
| Msa0878190 | AT3G45610.1 | 58.065 | 62 | 26 | 0 | 85 | 146 | 36 | 97 | 5.39e-23 | 96.3 |
| Msa0878190 | AT5G65590.1 | 69.091 | 55 | 17 | 0 | 89 | 143 | 41 | 95 | 7.11e-23 | 97.4 |
| Msa0878190 | AT3G50410.1 | 67.273 | 55 | 18 | 0 | 89 | 143 | 30 | 84 | 1.26e-22 | 95.5 |
| Msa0878190 | AT1G07640.1 | 67.857 | 56 | 17 | 1 | 89 | 143 | 21 | 76 | 1.31e-22 | 95.9 |
| Msa0878190 | AT1G07640.2 | 67.857 | 56 | 17 | 1 | 89 | 143 | 77 | 132 | 2.24e-22 | 96.3 |
| Msa0878190 | AT4G00940.1 | 54.167 | 72 | 29 | 1 | 77 | 144 | 52 | 123 | 2.45e-22 | 95.5 |
| Msa0878190 | AT4G00940.3 | 54.167 | 72 | 29 | 1 | 77 | 144 | 52 | 123 | 2.45e-22 | 95.5 |
| Msa0878190 | AT4G00940.2 | 54.167 | 72 | 29 | 1 | 77 | 144 | 52 | 123 | 2.45e-22 | 95.5 |
| Msa0878190 | AT1G07640.3 | 67.857 | 56 | 17 | 1 | 89 | 143 | 85 | 140 | 2.92e-22 | 96.3 |
| Msa0878190 | AT5G02460.1 | 59.677 | 62 | 25 | 0 | 82 | 143 | 88 | 149 | 3.74e-22 | 96.7 |
| Msa0878190 | AT4G38000.1 | 48.352 | 91 | 37 | 2 | 88 | 177 | 40 | 121 | 4.17e-22 | 94.0 |
| Msa0878190 | AT1G64620.1 | 58.333 | 60 | 25 | 0 | 78 | 137 | 38 | 97 | 7.06e-22 | 95.1 |
| Msa0878190 | AT2G28510.1 | 67.857 | 56 | 18 | 0 | 91 | 146 | 50 | 105 | 7.31e-22 | 94.0 |
| Msa0878190 | AT5G66940.1 | 43.636 | 110 | 50 | 3 | 76 | 185 | 26 | 123 | 9.22e-22 | 92.4 |
| Msa0878190 | AT4G21050.1 | 50.000 | 78 | 37 | 1 | 69 | 144 | 2 | 79 | 3.30e-21 | 90.5 |
| Msa0878190 | AT3G52440.1 | 64.151 | 53 | 19 | 0 | 91 | 143 | 27 | 79 | 1.20e-20 | 90.1 |
| Msa0878190 | AT3G52440.2 | 64.151 | 53 | 19 | 0 | 91 | 143 | 46 | 98 | 1.66e-20 | 90.1 |
| Msa0878190 | AT2G46590.1 | 62.264 | 53 | 20 | 0 | 84 | 136 | 63 | 115 | 2.25e-20 | 91.3 |
| Msa0878190 | AT2G46590.2 | 62.264 | 53 | 20 | 0 | 84 | 136 | 75 | 127 | 2.77e-20 | 90.9 |
| Msa0878190 | AT1G47655.1 | 65.306 | 49 | 17 | 0 | 89 | 137 | 29 | 77 | 2.82e-20 | 88.2 |
| Msa0878190 | AT1G21340.1 | 68.000 | 50 | 16 | 0 | 91 | 140 | 40 | 89 | 3.40e-20 | 89.0 |
| Msa0878190 | AT5G62940.1 | 57.812 | 64 | 26 | 1 | 77 | 139 | 60 | 123 | 3.46e-20 | 90.9 |
| Msa0878190 | AT4G21040.1 | 56.140 | 57 | 25 | 0 | 91 | 147 | 27 | 83 | 1.45e-16 | 78.2 |
| Msa0878190 | AT4G21080.1 | 54.386 | 57 | 26 | 0 | 91 | 147 | 27 | 83 | 4.71e-16 | 77.0 |
Find 64 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACGGTATTGTCCTAAAATT+TGG | 0.229755 | 6_1:+18798700 | Msa0878190:CDS |
| AATTTGTTCCTGAATCATTT+AGG | 0.243494 | 6_1:+18799088 | Msa0878190:CDS |
| ATATTTCTCTTGCAGTTTCT+AGG | 0.261830 | 6_1:-18798769 | None:intergenic |
| GTCGGAAGTGTCATAGATAT+TGG | 0.311203 | 6_1:+18798503 | Msa0878190:CDS |
| ACCTCGAATCGTTAGATTCA+TGG | 0.324349 | 6_1:-18798741 | None:intergenic |
| GATCCATTCCTAAATGATTC+AGG | 0.331263 | 6_1:-18799096 | None:intergenic |
| TCTCTTTGGAAAGAAGATTC+AGG | 0.348051 | 6_1:+18797090 | Msa0878190:CDS |
| AAGCACTGTGGAAGATAATA+TGG | 0.348391 | 6_1:+18798348 | Msa0878190:CDS |
| TTGTTCAAGCTTTGATTCAA+TGG | 0.349711 | 6_1:-18798952 | None:intergenic |
| GCTAACAAATGTAGAGGAAA+TGG | 0.377738 | 6_1:+18798802 | Msa0878190:CDS |
| ATGCAAATGTGTAACCCTTA+TGG | 0.378243 | 6_1:+18799000 | Msa0878190:CDS |
| AGGAATGGATCAGTTTCAAT+AGG | 0.385406 | 6_1:+18799108 | Msa0878190:CDS |
| CCTGAAAACTGCAGCAGATT+CGG | 0.385532 | 6_1:-18798665 | None:intergenic |
| TAGCCGAATCTGAACATAAT+AGG | 0.394096 | 6_1:+18798887 | Msa0878190:CDS |
| TGACCTATTATGTTCAGATT+CGG | 0.422672 | 6_1:-18798890 | None:intergenic |
| TCCATGAATCTAACGATTCG+AGG | 0.432538 | 6_1:+18798740 | Msa0878190:CDS |
| GTCTGAAGATGTTCGGCATA+TGG | 0.438201 | 6_1:-18799050 | None:intergenic |
| GAACTAGGATCAACGCCATA+AGG | 0.439532 | 6_1:-18799015 | None:intergenic |
| AGAAACGTTCCTTTCGGTGC+AGG | 0.439748 | 6_1:+18798544 | Msa0878190:CDS |
| CTTGAACAATGTTCCTTCCA+TGG | 0.451475 | 6_1:+18798966 | Msa0878190:CDS |
| CGCCACATGATTGTAGCTTC+CGG | 0.453024 | 6_1:+18798601 | Msa0878190:CDS |
| TTCGATCAAGACAGAATCTC+TGG | 0.463194 | 6_1:-18799220 | None:intergenic |
| AGAGCTACCCTGCATCTTCA+TGG | 0.465844 | 6_1:+18798923 | Msa0878190:CDS |
| GGACATTGAACAATCTTGTC+CGG | 0.468204 | 6_1:-18798409 | None:intergenic |
| TTGATCGAAGACACTAATCT+TGG | 0.475063 | 6_1:+18799234 | Msa0878190:three_prime_UTR |
| TTCCTTTCGGTGCAGGGAGA+CGG | 0.475764 | 6_1:+18798551 | Msa0878190:CDS |
| ACTTACCATGGTTGAAGAGT+TGG | 0.478391 | 6_1:-18797113 | None:intergenic |
| TCATAGTTGTTGCTCCGGTA+TGG | 0.482344 | 6_1:+18799174 | Msa0878190:three_prime_UTR |
| ATGTTCGGTCTGAAGATGTT+CGG | 0.485708 | 6_1:-18799057 | None:intergenic |
| GGCGTTGCTTTCAAAATTTG+AGG | 0.487467 | 6_1:-18798635 | None:intergenic |
| TTCAGGTGCTCAAATAATAA+CGG | 0.489366 | 6_1:+18798682 | Msa0878190:CDS |
| TATTGTCCTAAAATTTGGTC+CGG | 0.499333 | 6_1:+18798705 | Msa0878190:CDS |
| GGAATCATCCATGAAGATGC+AGG | 0.501713 | 6_1:-18798931 | None:intergenic |
| AACGTTTCTCATTGTTCCAC+CGG | 0.503306 | 6_1:-18798530 | None:intergenic |
| ACAATGAGAAACGTTCCTTT+CGG | 0.504607 | 6_1:+18798538 | Msa0878190:CDS |
| ACAAATTGCAAGCCAATGTT+CGG | 0.513658 | 6_1:-18799072 | None:intergenic |
| GTTCCTGAATCATTTAGGAA+TGG | 0.513930 | 6_1:+18799093 | Msa0878190:CDS |
| CAAGGATCGGTGATCCATAC+CGG | 0.519624 | 6_1:-18799188 | None:intergenic |
| TGGCACCACTGCATTGAACT+AGG | 0.522209 | 6_1:-18799030 | None:intergenic |
| TGTGTATCTTCTGTGACAAA+TGG | 0.528423 | 6_1:+18798844 | Msa0878190:CDS |
| GTGTTGAAACTGTTGCATCT+TGG | 0.528822 | 6_1:-18798430 | None:intergenic |
| GAAACGTTCCTTTCGGTGCA+GGG | 0.532355 | 6_1:+18798545 | Msa0878190:CDS |
| TGCAGCAGATTCGGCAGAAG+AGG | 0.533984 | 6_1:-18798656 | None:intergenic |
| TGTCATAGATATTGGACTGC+CGG | 0.542196 | 6_1:+18798511 | Msa0878190:CDS |
| TTCCGTCTCCCTGCACCGAA+AGG | 0.555844 | 6_1:-18798553 | None:intergenic |
| GCTAGTCATAGTTGTTGCTC+CGG | 0.559422 | 6_1:+18799169 | Msa0878190:exon |
| ATTGAAGATTGAACCATGGA+AGG | 0.561855 | 6_1:-18798979 | None:intergenic |
| AACTAGGATCAACGCCATAA+GGG | 0.563985 | 6_1:-18799014 | None:intergenic |
| ATTTGAGGTTGAAATTCCAC+CGG | 0.565984 | 6_1:-18798620 | None:intergenic |
| AACATCTTCAGACCGAACAT+TGG | 0.582195 | 6_1:+18799060 | Msa0878190:CDS |
| TAGCTAGTAGTAGATGAAGA+AGG | 0.592040 | 6_1:-18799150 | None:intergenic |
| GCAAGTGCTAACAAATGTAG+AGG | 0.606351 | 6_1:+18798796 | Msa0878190:CDS |
| TCAGGCCAACTCTTCAACCA+TGG | 0.613442 | 6_1:+18797108 | Msa0878190:CDS |
| GTGACAAATGGTTATACTCG+AGG | 0.618192 | 6_1:+18798856 | Msa0878190:CDS |
| CATAGATATTGGACTGCCGG+TGG | 0.627706 | 6_1:+18798514 | Msa0878190:CDS |
| GAATCATCCATGAAGATGCA+GGG | 0.636010 | 6_1:-18798930 | None:intergenic |
| TTGATCCTAGTTCAATGCAG+TGG | 0.644085 | 6_1:+18799025 | Msa0878190:CDS |
| TTGCATTGAAGATTGAACCA+TGG | 0.644235 | 6_1:-18798983 | None:intergenic |
| CACATGATTGTAGCTTCCGG+TGG | 0.649268 | 6_1:+18798604 | Msa0878190:CDS |
| TGCAGTAACTCAAAGCACAA+AGG | 0.653363 | 6_1:+18798247 | Msa0878190:CDS |
| ACTACAATGTCAGTCAACCT+CGG | 0.657312 | 6_1:+18798473 | Msa0878190:CDS |
| CACCGGAAGCTACAATCATG+TGG | 0.658948 | 6_1:-18798603 | None:intergenic |
| GAGTACAAGAAATTTCAAGA+TGG | 0.659871 | 6_1:-18799270 | None:intergenic |
| AAAAGTTTACACAAGCACTG+TGG | 0.736976 | 6_1:+18798336 | Msa0878190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCTTAATTCTTTTTTT+TGG | + | chr6_1:18797680-18797699 | Msa0878190:intron | 10.0% |
| !!! | AATTTCTTAATTCTTTTTTT+TGG | + | chr6_1:18797680-18797699 | Msa0878190:intron | 10.0% |
| !! | TTCTAAATTAACATGAAAAA+TGG | - | chr6_1:18797166-18797185 | None:intergenic | 15.0% |
| !!! | TAATACTCTTCAAATTTTAA+AGG | - | chr6_1:18797247-18797266 | None:intergenic | 15.0% |
| !! | AATTTAATAAATTGAGACTA+AGG | + | chr6_1:18797387-18797406 | Msa0878190:intron | 15.0% |
| !! | GAAAATATAGACAATATATT+TGG | + | chr6_1:18797446-18797465 | Msa0878190:intron | 15.0% |
| !!! | AGAATTAAGAAATTTTTAAG+AGG | - | chr6_1:18797674-18797693 | None:intergenic | 15.0% |
| !! | ACTATAAAATAAATTCCTTA+TGG | - | chr6_1:18798069-18798088 | None:intergenic | 15.0% |
| !! | ATATTCAAAAAACAAAATCA+TGG | - | chr6_1:18798156-18798175 | None:intergenic | 15.0% |
| !! | TTCTAAATTAACATGAAAAA+TGG | - | chr6_1:18797166-18797185 | None:intergenic | 15.0% |
| !!! | TAATACTCTTCAAATTTTAA+AGG | - | chr6_1:18797247-18797266 | None:intergenic | 15.0% |
| !! | AATTTAATAAATTGAGACTA+AGG | + | chr6_1:18797387-18797406 | Msa0878190:intron | 15.0% |
| !! | GAAAATATAGACAATATATT+TGG | + | chr6_1:18797446-18797465 | Msa0878190:intron | 15.0% |
| !!! | AGAATTAAGAAATTTTTAAG+AGG | - | chr6_1:18797674-18797693 | None:intergenic | 15.0% |
| !! | ACTATAAAATAAATTCCTTA+TGG | - | chr6_1:18798069-18798088 | None:intergenic | 15.0% |
| !! | ATATTCAAAAAACAAAATCA+TGG | - | chr6_1:18798156-18798175 | None:intergenic | 15.0% |
| !! | TGTTTCTTCTAATATCAAAT+AGG | + | chr6_1:18797492-18797511 | Msa0878190:intron | 20.0% |
| !!! | GAATCTATTTTTGTGAAATT+GGG | + | chr6_1:18797535-18797554 | Msa0878190:intron | 20.0% |
| !! | TATTAAATCATACAATTGCT+TGG | + | chr6_1:18797611-18797630 | Msa0878190:intron | 20.0% |
| !!! | ATAGTATAATTTGTCTTGAA+TGG | + | chr6_1:18797842-18797861 | Msa0878190:intron | 20.0% |
| !!! | ACTATAATTCATGATGATTT+TGG | - | chr6_1:18798032-18798051 | None:intergenic | 20.0% |
| !!! | ATCATGAATTATAGTTCTAA+TGG | + | chr6_1:18798037-18798056 | Msa0878190:intron | 20.0% |
| !! | TGTTTCTTCTAATATCAAAT+AGG | + | chr6_1:18797492-18797511 | Msa0878190:intron | 20.0% |
| !!! | GAATCTATTTTTGTGAAATT+GGG | + | chr6_1:18797535-18797554 | Msa0878190:intron | 20.0% |
| !! | TATTAAATCATACAATTGCT+TGG | + | chr6_1:18797611-18797630 | Msa0878190:intron | 20.0% |
| !!! | ATAGTATAATTTGTCTTGAA+TGG | + | chr6_1:18797842-18797861 | Msa0878190:intron | 20.0% |
| !!! | ACTATAATTCATGATGATTT+TGG | - | chr6_1:18798032-18798051 | None:intergenic | 20.0% |
| !!! | ATCATGAATTATAGTTCTAA+TGG | + | chr6_1:18798037-18798056 | Msa0878190:intron | 20.0% |
| !!! | GATTTTAGTATCATTCTCTT+TGG | + | chr6_1:18797076-18797095 | Msa0878190:CDS | 25.0% |
| ! | TAAGATATGATAACTTACCA+TGG | - | chr6_1:18797128-18797147 | None:intergenic | 25.0% |
| !!! | GCAAGTAGTTGATTTTATAT+AGG | + | chr6_1:18797424-18797443 | Msa0878190:intron | 25.0% |
| !!! | TATTTGGTTCTTTTCTTCAA+AGG | + | chr6_1:18797462-18797481 | Msa0878190:intron | 25.0% |
| !!! | ATTTGGTTCTTTTCTTCAAA+GGG | + | chr6_1:18797463-18797482 | Msa0878190:intron | 25.0% |
| !!! | CGAATCTATTTTTGTGAAAT+TGG | + | chr6_1:18797534-18797553 | Msa0878190:intron | 25.0% |
| !!! | TAAGAAATTTTTAAGAGGCT+TGG | - | chr6_1:18797669-18797688 | None:intergenic | 25.0% |
| ! | GAGTTTCAACAAAATTATGA+TGG | - | chr6_1:18797882-18797901 | None:intergenic | 25.0% |
| !!! | AACATCAGCTAAGTTTTTTT+AGG | + | chr6_1:18797961-18797980 | Msa0878190:intron | 25.0% |
| ! | AAAACCAATAATCGTAAACA+CGG | + | chr6_1:18797988-18798007 | Msa0878190:intron | 25.0% |
| !! | ATAATTCATGATGATTTTGG+TGG | - | chr6_1:18798029-18798048 | None:intergenic | 25.0% |
| ! | AAGTTATCCAGAATAAAGTT+TGG | - | chr6_1:18798193-18798212 | None:intergenic | 25.0% |
| !!! | TTCTCAATGTTTTGAATATG+AGG | - | chr6_1:18798283-18798302 | None:intergenic | 25.0% |
| !! | AATTTGTTCCTGAATCATTT+AGG | + | chr6_1:18799088-18799107 | Msa0878190:CDS | 25.0% |
| !!! | GATTTTAGTATCATTCTCTT+TGG | + | chr6_1:18797076-18797095 | Msa0878190:CDS | 25.0% |
| ! | TAAGATATGATAACTTACCA+TGG | - | chr6_1:18797128-18797147 | None:intergenic | 25.0% |
| !!! | GCAAGTAGTTGATTTTATAT+AGG | + | chr6_1:18797424-18797443 | Msa0878190:intron | 25.0% |
| !!! | TATTTGGTTCTTTTCTTCAA+AGG | + | chr6_1:18797462-18797481 | Msa0878190:intron | 25.0% |
| !!! | ATTTGGTTCTTTTCTTCAAA+GGG | + | chr6_1:18797463-18797482 | Msa0878190:intron | 25.0% |
| !!! | CGAATCTATTTTTGTGAAAT+TGG | + | chr6_1:18797534-18797553 | Msa0878190:intron | 25.0% |
| !!! | TAAGAAATTTTTAAGAGGCT+TGG | - | chr6_1:18797669-18797688 | None:intergenic | 25.0% |
| ! | GAGTTTCAACAAAATTATGA+TGG | - | chr6_1:18797882-18797901 | None:intergenic | 25.0% |
| !!! | AACATCAGCTAAGTTTTTTT+AGG | + | chr6_1:18797961-18797980 | Msa0878190:intron | 25.0% |
| ! | AAAACCAATAATCGTAAACA+CGG | + | chr6_1:18797988-18798007 | Msa0878190:intron | 25.0% |
| !! | ATAATTCATGATGATTTTGG+TGG | - | chr6_1:18798029-18798048 | None:intergenic | 25.0% |
| ! | AAGTTATCCAGAATAAAGTT+TGG | - | chr6_1:18798193-18798212 | None:intergenic | 25.0% |
| !!! | TTCTCAATGTTTTGAATATG+AGG | - | chr6_1:18798283-18798302 | None:intergenic | 25.0% |
| !! | AATTTGTTCCTGAATCATTT+AGG | + | chr6_1:18799088-18799107 | Msa0878190:CDS | 25.0% |
| AATTTGTCTTGAATGGTGAA+AGG | + | chr6_1:18797849-18797868 | Msa0878190:intron | 30.0% | |
| ! | TTCTAATGGTTTGTACCATA+AGG | + | chr6_1:18798051-18798070 | Msa0878190:intron | 30.0% |
| TAAAGTTTGGCAACAAACTT+TGG | - | chr6_1:18798180-18798199 | None:intergenic | 30.0% | |
| TTTGTTGCCAAACTTTATTC+TGG | + | chr6_1:18798183-18798202 | Msa0878190:intron | 30.0% | |
| TTCAGGTGCTCAAATAATAA+CGG | + | chr6_1:18798682-18798701 | Msa0878190:CDS | 30.0% | |
| AACGGTATTGTCCTAAAATT+TGG | + | chr6_1:18798700-18798719 | Msa0878190:CDS | 30.0% | |
| TATTGTCCTAAAATTTGGTC+CGG | + | chr6_1:18798705-18798724 | Msa0878190:CDS | 30.0% | |
| ATATTTCTCTTGCAGTTTCT+AGG | - | chr6_1:18798772-18798791 | None:intergenic | 30.0% | |
| TGACCTATTATGTTCAGATT+CGG | - | chr6_1:18798893-18798912 | None:intergenic | 30.0% | |
| ! | TTGTTCAAGCTTTGATTCAA+TGG | - | chr6_1:18798955-18798974 | None:intergenic | 30.0% |
| AATTTGTCTTGAATGGTGAA+AGG | + | chr6_1:18797849-18797868 | Msa0878190:intron | 30.0% | |
| ! | TTCTAATGGTTTGTACCATA+AGG | + | chr6_1:18798051-18798070 | Msa0878190:intron | 30.0% |
| TAAAGTTTGGCAACAAACTT+TGG | - | chr6_1:18798180-18798199 | None:intergenic | 30.0% | |
| TTTGTTGCCAAACTTTATTC+TGG | + | chr6_1:18798183-18798202 | Msa0878190:intron | 30.0% | |
| TTCAGGTGCTCAAATAATAA+CGG | + | chr6_1:18798682-18798701 | Msa0878190:CDS | 30.0% | |
| AACGGTATTGTCCTAAAATT+TGG | + | chr6_1:18798700-18798719 | Msa0878190:CDS | 30.0% | |
| TATTGTCCTAAAATTTGGTC+CGG | + | chr6_1:18798705-18798724 | Msa0878190:CDS | 30.0% | |
| ATATTTCTCTTGCAGTTTCT+AGG | - | chr6_1:18798772-18798791 | None:intergenic | 30.0% | |
| TGACCTATTATGTTCAGATT+CGG | - | chr6_1:18798893-18798912 | None:intergenic | 30.0% | |
| ! | TTGTTCAAGCTTTGATTCAA+TGG | - | chr6_1:18798955-18798974 | None:intergenic | 30.0% |
| ! | TCTCTTTGGAAAGAAGATTC+AGG | + | chr6_1:18797090-18797109 | Msa0878190:CDS | 35.0% |
| !!! | TGGTGCTCTTGTTTTTTTCA+AGG | + | chr6_1:18797631-18797650 | Msa0878190:intron | 35.0% |
| ! | AAAAGTTTACACAAGCACTG+TGG | + | chr6_1:18798336-18798355 | Msa0878190:CDS | 35.0% |
| ! | AAGCACTGTGGAAGATAATA+TGG | + | chr6_1:18798348-18798367 | Msa0878190:CDS | 35.0% |
| AGACAAAGTCCTCAAAAAAC+CGG | + | chr6_1:18798390-18798409 | Msa0878190:CDS | 35.0% | |
| ACAATGAGAAACGTTCCTTT+CGG | + | chr6_1:18798538-18798557 | Msa0878190:CDS | 35.0% | |
| ! | ATTTGAGGTTGAAATTCCAC+CGG | - | chr6_1:18798623-18798642 | None:intergenic | 35.0% |
| ! | CATTTTCCGGACCAAATTTT+AGG | - | chr6_1:18798714-18798733 | None:intergenic | 35.0% |
| ! | TCATGGACATATGCATTTTC+CGG | - | chr6_1:18798727-18798746 | None:intergenic | 35.0% |
| GCTAACAAATGTAGAGGAAA+TGG | + | chr6_1:18798802-18798821 | Msa0878190:CDS | 35.0% | |
| TGTGTATCTTCTGTGACAAA+TGG | + | chr6_1:18798844-18798863 | Msa0878190:CDS | 35.0% | |
| TAGCCGAATCTGAACATAAT+AGG | + | chr6_1:18798887-18798906 | Msa0878190:CDS | 35.0% | |
| ATTGAAGATTGAACCATGGA+AGG | - | chr6_1:18798982-18799001 | None:intergenic | 35.0% | |
| TTGCATTGAAGATTGAACCA+TGG | - | chr6_1:18798986-18799005 | None:intergenic | 35.0% | |
| ATGCAAATGTGTAACCCTTA+TGG | + | chr6_1:18799000-18799019 | Msa0878190:CDS | 35.0% | |
| ACAAATTGCAAGCCAATGTT+CGG | - | chr6_1:18799075-18799094 | None:intergenic | 35.0% | |
| GTTCCTGAATCATTTAGGAA+TGG | + | chr6_1:18799093-18799112 | Msa0878190:CDS | 35.0% | |
| GATCCATTCCTAAATGATTC+AGG | - | chr6_1:18799099-18799118 | None:intergenic | 35.0% | |
| AGGAATGGATCAGTTTCAAT+AGG | + | chr6_1:18799108-18799127 | Msa0878190:CDS | 35.0% | |
| TAGCTAGTAGTAGATGAAGA+AGG | - | chr6_1:18799153-18799172 | None:intergenic | 35.0% | |
| TTGATCGAAGACACTAATCT+TGG | + | chr6_1:18799234-18799253 | Msa0878190:three_prime_UTR | 35.0% | |
| ! | TCTCTTTGGAAAGAAGATTC+AGG | + | chr6_1:18797090-18797109 | Msa0878190:CDS | 35.0% |
| !!! | TGGTGCTCTTGTTTTTTTCA+AGG | + | chr6_1:18797631-18797650 | Msa0878190:intron | 35.0% |
| ! | AAAAGTTTACACAAGCACTG+TGG | + | chr6_1:18798336-18798355 | Msa0878190:CDS | 35.0% |
| ! | AAGCACTGTGGAAGATAATA+TGG | + | chr6_1:18798348-18798367 | Msa0878190:CDS | 35.0% |
| AGACAAAGTCCTCAAAAAAC+CGG | + | chr6_1:18798390-18798409 | Msa0878190:CDS | 35.0% | |
| ACAATGAGAAACGTTCCTTT+CGG | + | chr6_1:18798538-18798557 | Msa0878190:CDS | 35.0% | |
| ! | ATTTGAGGTTGAAATTCCAC+CGG | - | chr6_1:18798623-18798642 | None:intergenic | 35.0% |
| ! | CATTTTCCGGACCAAATTTT+AGG | - | chr6_1:18798714-18798733 | None:intergenic | 35.0% |
| ! | TCATGGACATATGCATTTTC+CGG | - | chr6_1:18798727-18798746 | None:intergenic | 35.0% |
| GCTAACAAATGTAGAGGAAA+TGG | + | chr6_1:18798802-18798821 | Msa0878190:CDS | 35.0% | |
| TGTGTATCTTCTGTGACAAA+TGG | + | chr6_1:18798844-18798863 | Msa0878190:CDS | 35.0% | |
| TAGCCGAATCTGAACATAAT+AGG | + | chr6_1:18798887-18798906 | Msa0878190:CDS | 35.0% | |
| ATTGAAGATTGAACCATGGA+AGG | - | chr6_1:18798982-18799001 | None:intergenic | 35.0% | |
| TTGCATTGAAGATTGAACCA+TGG | - | chr6_1:18798986-18799005 | None:intergenic | 35.0% | |
| ATGCAAATGTGTAACCCTTA+TGG | + | chr6_1:18799000-18799019 | Msa0878190:CDS | 35.0% | |
| ACAAATTGCAAGCCAATGTT+CGG | - | chr6_1:18799075-18799094 | None:intergenic | 35.0% | |
| GTTCCTGAATCATTTAGGAA+TGG | + | chr6_1:18799093-18799112 | Msa0878190:CDS | 35.0% | |
| GATCCATTCCTAAATGATTC+AGG | - | chr6_1:18799099-18799118 | None:intergenic | 35.0% | |
| AGGAATGGATCAGTTTCAAT+AGG | + | chr6_1:18799108-18799127 | Msa0878190:CDS | 35.0% | |
| TAGCTAGTAGTAGATGAAGA+AGG | - | chr6_1:18799153-18799172 | None:intergenic | 35.0% | |
| TTGATCGAAGACACTAATCT+TGG | + | chr6_1:18799234-18799253 | Msa0878190:three_prime_UTR | 35.0% | |
| ACTTACCATGGTTGAAGAGT+TGG | - | chr6_1:18797116-18797135 | None:intergenic | 40.0% | |
| GTCACCGTGTTTACGATTAT+TGG | - | chr6_1:18797995-18798014 | None:intergenic | 40.0% | |
| TGCAGTAACTCAAAGCACAA+AGG | + | chr6_1:18798247-18798266 | Msa0878190:CDS | 40.0% | |
| !!! | CAATCTTGTCCGGTTTTTTG+AGG | - | chr6_1:18798402-18798421 | None:intergenic | 40.0% |
| GGACATTGAACAATCTTGTC+CGG | - | chr6_1:18798412-18798431 | None:intergenic | 40.0% | |
| GTGTTGAAACTGTTGCATCT+TGG | - | chr6_1:18798433-18798452 | None:intergenic | 40.0% | |
| ACTACAATGTCAGTCAACCT+CGG | + | chr6_1:18798473-18798492 | Msa0878190:CDS | 40.0% | |
| !! | GTCGGAAGTGTCATAGATAT+TGG | + | chr6_1:18798503-18798522 | Msa0878190:CDS | 40.0% |
| TGTCATAGATATTGGACTGC+CGG | + | chr6_1:18798511-18798530 | Msa0878190:CDS | 40.0% | |
| AACGTTTCTCATTGTTCCAC+CGG | - | chr6_1:18798533-18798552 | None:intergenic | 40.0% | |
| ! | GGCGTTGCTTTCAAAATTTG+AGG | - | chr6_1:18798638-18798657 | None:intergenic | 40.0% |
| TCCATGAATCTAACGATTCG+AGG | + | chr6_1:18798740-18798759 | Msa0878190:CDS | 40.0% | |
| ACCTCGAATCGTTAGATTCA+TGG | - | chr6_1:18798744-18798763 | None:intergenic | 40.0% | |
| GCAAGTGCTAACAAATGTAG+AGG | + | chr6_1:18798796-18798815 | Msa0878190:CDS | 40.0% | |
| GTGACAAATGGTTATACTCG+AGG | + | chr6_1:18798856-18798875 | Msa0878190:CDS | 40.0% | |
| GAATCATCCATGAAGATGCA+GGG | - | chr6_1:18798933-18798952 | None:intergenic | 40.0% | |
| CTTGAACAATGTTCCTTCCA+TGG | + | chr6_1:18798966-18798985 | Msa0878190:CDS | 40.0% | |
| AACTAGGATCAACGCCATAA+GGG | - | chr6_1:18799017-18799036 | None:intergenic | 40.0% | |
| TTGATCCTAGTTCAATGCAG+TGG | + | chr6_1:18799025-18799044 | Msa0878190:CDS | 40.0% | |
| ATGTTCGGTCTGAAGATGTT+CGG | - | chr6_1:18799060-18799079 | None:intergenic | 40.0% | |
| AACATCTTCAGACCGAACAT+TGG | + | chr6_1:18799060-18799079 | Msa0878190:CDS | 40.0% | |
| ! | AATCTCTGGTGTGTTTTCCA+AGG | - | chr6_1:18799209-18799228 | None:intergenic | 40.0% |
| TTCGATCAAGACAGAATCTC+TGG | - | chr6_1:18799223-18799242 | None:intergenic | 40.0% | |
| ACTTACCATGGTTGAAGAGT+TGG | - | chr6_1:18797116-18797135 | None:intergenic | 40.0% | |
| GTCACCGTGTTTACGATTAT+TGG | - | chr6_1:18797995-18798014 | None:intergenic | 40.0% | |
| TGCAGTAACTCAAAGCACAA+AGG | + | chr6_1:18798247-18798266 | Msa0878190:CDS | 40.0% | |
| !!! | CAATCTTGTCCGGTTTTTTG+AGG | - | chr6_1:18798402-18798421 | None:intergenic | 40.0% |
| GGACATTGAACAATCTTGTC+CGG | - | chr6_1:18798412-18798431 | None:intergenic | 40.0% | |
| GTGTTGAAACTGTTGCATCT+TGG | - | chr6_1:18798433-18798452 | None:intergenic | 40.0% | |
| ACTACAATGTCAGTCAACCT+CGG | + | chr6_1:18798473-18798492 | Msa0878190:CDS | 40.0% | |
| !! | GTCGGAAGTGTCATAGATAT+TGG | + | chr6_1:18798503-18798522 | Msa0878190:CDS | 40.0% |
| TGTCATAGATATTGGACTGC+CGG | + | chr6_1:18798511-18798530 | Msa0878190:CDS | 40.0% | |
| AACGTTTCTCATTGTTCCAC+CGG | - | chr6_1:18798533-18798552 | None:intergenic | 40.0% | |
| ! | GGCGTTGCTTTCAAAATTTG+AGG | - | chr6_1:18798638-18798657 | None:intergenic | 40.0% |
| TCCATGAATCTAACGATTCG+AGG | + | chr6_1:18798740-18798759 | Msa0878190:CDS | 40.0% | |
| ACCTCGAATCGTTAGATTCA+TGG | - | chr6_1:18798744-18798763 | None:intergenic | 40.0% | |
| GCAAGTGCTAACAAATGTAG+AGG | + | chr6_1:18798796-18798815 | Msa0878190:CDS | 40.0% | |
| GTGACAAATGGTTATACTCG+AGG | + | chr6_1:18798856-18798875 | Msa0878190:CDS | 40.0% | |
| GAATCATCCATGAAGATGCA+GGG | - | chr6_1:18798933-18798952 | None:intergenic | 40.0% | |
| CTTGAACAATGTTCCTTCCA+TGG | + | chr6_1:18798966-18798985 | Msa0878190:CDS | 40.0% | |
| AACTAGGATCAACGCCATAA+GGG | - | chr6_1:18799017-18799036 | None:intergenic | 40.0% | |
| TTGATCCTAGTTCAATGCAG+TGG | + | chr6_1:18799025-18799044 | Msa0878190:CDS | 40.0% | |
| ATGTTCGGTCTGAAGATGTT+CGG | - | chr6_1:18799060-18799079 | None:intergenic | 40.0% | |
| AACATCTTCAGACCGAACAT+TGG | + | chr6_1:18799060-18799079 | Msa0878190:CDS | 40.0% | |
| ! | AATCTCTGGTGTGTTTTCCA+AGG | - | chr6_1:18799209-18799228 | None:intergenic | 40.0% |
| TTCGATCAAGACAGAATCTC+TGG | - | chr6_1:18799223-18799242 | None:intergenic | 40.0% | |
| ! | GTCAACCTCGGCATTTTTGT+CGG | + | chr6_1:18798485-18798504 | Msa0878190:CDS | 45.0% |
| CCTGAAAACTGCAGCAGATT+CGG | - | chr6_1:18798668-18798687 | None:intergenic | 45.0% | |
| GGAATCATCCATGAAGATGC+AGG | - | chr6_1:18798934-18798953 | None:intergenic | 45.0% | |
| GAACTAGGATCAACGCCATA+AGG | - | chr6_1:18799018-18799037 | None:intergenic | 45.0% | |
| GTCTGAAGATGTTCGGCATA+TGG | - | chr6_1:18799053-18799072 | None:intergenic | 45.0% | |
| GCTAGTCATAGTTGTTGCTC+CGG | + | chr6_1:18799169-18799188 | Msa0878190:exon | 45.0% | |
| TCATAGTTGTTGCTCCGGTA+TGG | + | chr6_1:18799174-18799193 | Msa0878190:three_prime_UTR | 45.0% | |
| ! | CTGGTGTGTTTTCCAAGGAT+CGG | - | chr6_1:18799204-18799223 | None:intergenic | 45.0% |
| ! | GTCAACCTCGGCATTTTTGT+CGG | + | chr6_1:18798485-18798504 | Msa0878190:CDS | 45.0% |
| CCTGAAAACTGCAGCAGATT+CGG | - | chr6_1:18798668-18798687 | None:intergenic | 45.0% | |
| GGAATCATCCATGAAGATGC+AGG | - | chr6_1:18798934-18798953 | None:intergenic | 45.0% | |
| GAACTAGGATCAACGCCATA+AGG | - | chr6_1:18799018-18799037 | None:intergenic | 45.0% | |
| GTCTGAAGATGTTCGGCATA+TGG | - | chr6_1:18799053-18799072 | None:intergenic | 45.0% | |
| GCTAGTCATAGTTGTTGCTC+CGG | + | chr6_1:18799169-18799188 | Msa0878190:exon | 45.0% | |
| TCATAGTTGTTGCTCCGGTA+TGG | + | chr6_1:18799174-18799193 | Msa0878190:three_prime_UTR | 45.0% | |
| ! | CTGGTGTGTTTTCCAAGGAT+CGG | - | chr6_1:18799204-18799223 | None:intergenic | 45.0% |
| !!! | TATTTTTTAACATATTTATT+TGG | + | chr6_1:18797281-18797300 | Msa0878190:intron | 5.0% |
| !!! | TATTTTTTAACATATTTATT+TGG | + | chr6_1:18797281-18797300 | Msa0878190:intron | 5.0% |
| TCAGGCCAACTCTTCAACCA+TGG | + | chr6_1:18797108-18797127 | Msa0878190:CDS | 50.0% | |
| ATCGTAAACACGGTGACACG+TGG | + | chr6_1:18797998-18798017 | Msa0878190:intron | 50.0% | |
| CACTTCCGACAAAAATGCCG+AGG | - | chr6_1:18798493-18798512 | None:intergenic | 50.0% | |
| CATAGATATTGGACTGCCGG+TGG | + | chr6_1:18798514-18798533 | Msa0878190:CDS | 50.0% | |
| ! | AGAAACGTTCCTTTCGGTGC+AGG | + | chr6_1:18798544-18798563 | Msa0878190:CDS | 50.0% |
| ! | GAAACGTTCCTTTCGGTGCA+GGG | + | chr6_1:18798545-18798564 | Msa0878190:CDS | 50.0% |
| CGCCACATGATTGTAGCTTC+CGG | + | chr6_1:18798601-18798620 | Msa0878190:CDS | 50.0% | |
| CACCGGAAGCTACAATCATG+TGG | - | chr6_1:18798606-18798625 | None:intergenic | 50.0% | |
| CACATGATTGTAGCTTCCGG+TGG | + | chr6_1:18798604-18798623 | Msa0878190:CDS | 50.0% | |
| ! | CCGAATCTGCTGCAGTTTTC+AGG | + | chr6_1:18798665-18798684 | Msa0878190:CDS | 50.0% |
| AGAGCTACCCTGCATCTTCA+TGG | + | chr6_1:18798923-18798942 | Msa0878190:CDS | 50.0% | |
| TGGCACCACTGCATTGAACT+AGG | - | chr6_1:18799033-18799052 | None:intergenic | 50.0% | |
| CAAGGATCGGTGATCCATAC+CGG | - | chr6_1:18799191-18799210 | None:intergenic | 50.0% | |
| TCAGGCCAACTCTTCAACCA+TGG | + | chr6_1:18797108-18797127 | Msa0878190:CDS | 50.0% | |
| ATCGTAAACACGGTGACACG+TGG | + | chr6_1:18797998-18798017 | Msa0878190:intron | 50.0% | |
| CACTTCCGACAAAAATGCCG+AGG | - | chr6_1:18798493-18798512 | None:intergenic | 50.0% | |
| CATAGATATTGGACTGCCGG+TGG | + | chr6_1:18798514-18798533 | Msa0878190:CDS | 50.0% | |
| ! | AGAAACGTTCCTTTCGGTGC+AGG | + | chr6_1:18798544-18798563 | Msa0878190:CDS | 50.0% |
| ! | GAAACGTTCCTTTCGGTGCA+GGG | + | chr6_1:18798545-18798564 | Msa0878190:CDS | 50.0% |
| CGCCACATGATTGTAGCTTC+CGG | + | chr6_1:18798601-18798620 | Msa0878190:CDS | 50.0% | |
| CACCGGAAGCTACAATCATG+TGG | - | chr6_1:18798606-18798625 | None:intergenic | 50.0% | |
| CACATGATTGTAGCTTCCGG+TGG | + | chr6_1:18798604-18798623 | Msa0878190:CDS | 50.0% | |
| ! | CCGAATCTGCTGCAGTTTTC+AGG | + | chr6_1:18798665-18798684 | Msa0878190:CDS | 50.0% |
| AGAGCTACCCTGCATCTTCA+TGG | + | chr6_1:18798923-18798942 | Msa0878190:CDS | 50.0% | |
| TGGCACCACTGCATTGAACT+AGG | - | chr6_1:18799033-18799052 | None:intergenic | 50.0% | |
| CAAGGATCGGTGATCCATAC+CGG | - | chr6_1:18799191-18799210 | None:intergenic | 50.0% | |
| ! | TTCCTTTCGGTGCAGGGAGA+CGG | + | chr6_1:18798551-18798570 | Msa0878190:CDS | 55.0% |
| TGCAGCAGATTCGGCAGAAG+AGG | - | chr6_1:18798659-18798678 | None:intergenic | 55.0% | |
| CGGTATGGATCACCGATCCT+TGG | + | chr6_1:18799189-18799208 | Msa0878190:three_prime_UTR | 55.0% | |
| ! | TTCCTTTCGGTGCAGGGAGA+CGG | + | chr6_1:18798551-18798570 | Msa0878190:CDS | 55.0% |
| TGCAGCAGATTCGGCAGAAG+AGG | - | chr6_1:18798659-18798678 | None:intergenic | 55.0% | |
| CGGTATGGATCACCGATCCT+TGG | + | chr6_1:18799189-18799208 | Msa0878190:three_prime_UTR | 55.0% | |
| TTCCGTCTCCCTGCACCGAA+AGG | - | chr6_1:18798556-18798575 | None:intergenic | 60.0% | |
| TTCCGTCTCCCTGCACCGAA+AGG | - | chr6_1:18798556-18798575 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 18797046 | 18799283 | 18797046 | ID=Msa0878190;Name=Msa0878190 |
| chr6_1 | mRNA | 18797046 | 18799283 | 18797046 | ID=Msa0878190-mRNA-1;Parent=Msa0878190;Name=Msa0878190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|110|338 |
| chr6_1 | exon | 18797046 | 18797129 | 18797046 | ID=Msa0878190-mRNA-1:exon:5071;Parent=Msa0878190-mRNA-1 |
| chr6_1 | exon | 18798241 | 18799283 | 18798241 | ID=Msa0878190-mRNA-1:exon:5072;Parent=Msa0878190-mRNA-1 |
| chr6_1 | CDS | 18797046 | 18797129 | 18797046 | ID=Msa0878190-mRNA-1:cds;Parent=Msa0878190-mRNA-1 |
| chr6_1 | CDS | 18798241 | 18799173 | 18798241 | ID=Msa0878190-mRNA-1:cds;Parent=Msa0878190-mRNA-1 |
| chr6_1 | three_prime_UTR | 18799174 | 18799283 | 18799174 | ID=Msa0878190-mRNA-1:three_prime_utr;Parent=Msa0878190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
