AlfalfaGEDB | Msa0878390

M. sativa cultivar zhongmu-4 / Msa0878390

KEGG: K13944|K21994
GO: GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878390	XP_013451538.1	53.171	205	60	3	220	404	39	227	2.82e-58	200
Msa0878390	XP_013451538.1	95.946	222	4	2	1	217	1	222	1.41e-146	425

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878390	sp\|Q9SRV3\|LBD20_ARATH	67.347	147	42	2	39	182	50	193	1.40e-54	184
Msa0878390	sp\|Q9SRV3\|LBD20_ARATH	50.000	112	38	1	220	313	50	161	3.70e-29	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878390	A0A072U858	53.171	205	60	3	220	404	39	227	1.34e-58	200
Msa0878390	A0A072U858	95.946	222	4	2	1	217	1	222	6.75e-147	425

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TFs/TRs:

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Gene ID	Type	Classification
Msa0878390	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878390	MtrunA17_Chr6g0460951	95.946	222	4	2	1	217	1	222	1.30e-150	425
Msa0878390	MtrunA17_Chr6g0460951	53.171	205	60	3	220	404	39	227	2.59e-62	200
Msa0878390	MtrunA17_Chr6g0460931	90.654	107	9	1	299	404	1	107	3.31e-53	172
Msa0878390	MtrunA17_Chr6g0460931	50.000	102	33	3	133	217	2	102	5.32e-14	67.8
Msa0878390	MtrunA17_Chr6g0460941	83.951	81	13	0	215	295	1	81	1.02e-43	147
Msa0878390	MtrunA17_Chr6g0460941	64.773	88	28	1	40	124	7	94	5.48e-35	124
Msa0878390	MtrunA17_Chr1g0184271	45.745	188	84	5	40	215	12	193	1.54e-42	149
Msa0878390	MtrunA17_Chr1g0184271	58.108	74	31	0	221	294	12	85	5.60e-26	104
Msa0878390	MtrunA17_Chr7g0260971	66.019	103	32	1	39	138	13	115	7.01e-41	144
Msa0878390	MtrunA17_Chr7g0260971	56.627	83	36	0	212	294	5	87	6.30e-26	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0878390	AT3G03760.1	67.347	147	42	2	39	182	50	193	1.43e-55	184
Msa0878390	AT3G03760.1	50.000	112	38	1	220	313	50	161	3.77e-30	117
Msa0878390	AT2G42430.1	49.438	178	56	5	39	182	14	191	4.04e-42	149
Msa0878390	AT2G42430.1	50.000	98	48	1	220	316	14	111	2.47e-26	106
Msa0878390	AT3G58190.1	60.169	118	43	2	40	154	11	127	1.01e-41	147
Msa0878390	AT3G58190.1	59.459	74	30	0	221	294	11	84	4.23e-26	105
Msa0878390	AT2G42440.1	56.881	109	44	1	39	144	6	114	2.20e-37	136
Msa0878390	AT2G42440.1	53.750	80	37	0	215	294	1	80	3.23e-25	103
Msa0878390	AT2G45420.1	62.500	104	36	1	43	143	40	143	3.79e-37	136
Msa0878390	AT2G45420.1	63.380	71	26	0	224	294	40	110	3.64e-24	100

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Find 101 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAATTGATGAATAGG+AGG	0.570071	6_1:-19297943	Msa0878390:CDS
AAAGCTCAGCAGACGAACAA+CGG	0.614223	6_1:-19293836	Msa0878390:CDS
AAATAGTCGCCGCAGCTTCT+TGG	0.360630	6_1:+19298351	None:intergenic
AACAACTTCAACCCTGGTTT+TGG	0.286713	6_1:-19297779	Msa0878390:CDS
AACATGAACAACTTCAACCC+TGG	0.523993	6_1:-19293635	Msa0878390:CDS
AACATGAACAACTTCAACCC+TGG	0.523993	6_1:-19297785	Msa0878390:CDS
AAGAACTTGCAAGCACCACA+CGG	0.689772	6_1:+19298515	None:intergenic
AAGAGCAACACAAGATGAAC+CGG	0.506885	6_1:-19298546	Msa0878390:CDS
AAGTGCTTGCAAGCCCCACA+CGG	0.644781	6_1:+19294386	None:intergenic
AATGGAGACTATGACCTATG+AGG	0.602127	6_1:-19294213	Msa0878390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGAGGTTACATTAATCT+TGG	+	chr6_1:19294136-19294155	None:intergenic	30.0%
TGCAAACTCAATTGATGAAT+AGG	-	chr6_1:19294230-19294249	Msa0878390:CDS	30.0%
AAACTCAATTGATGAATAGG+AGG	-	chr6_1:19294233-19294252	Msa0878390:CDS	30.0%
TGAAGTTGTTCATGTTCATA+AGG	+	chr6_1:19294387-19294406	None:intergenic	30.0%
TGGAAATACATTGACGATAA+TGG	+	chr6_1:19294623-19294642	None:intergenic	30.0%
AATAATGCTATAGGGGATAA+AGG	+	chr6_1:19294668-19294687	None:intergenic	30.0%
TCCTTGTGAATAATGCTATA+GGG	+	chr6_1:19294676-19294695	None:intergenic	30.0%
ATCCTTGTGAATAATGCTAT+AGG	+	chr6_1:19294677-19294696	None:intergenic	30.0%
TCATTTAACAGCTTAATGCT+AGG	+	chr6_1:19294817-19294836	None:intergenic	30.0%
TCTGATACTAATTGCAATTG+AGG	+	chr6_1:19294912-19294931	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	19293544	19298654	19293544	ID=Msa0878390;Name=Msa0878390
chr6_1	mRNA	19293544	19298654	19293544	ID=Msa0878390-mRNA-1;Parent=Msa0878390;Name=Msa0878390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|0.2\|0\|6\|0\|404
chr6_1	exon	19298439	19298654	19298439	ID=Msa0878390-mRNA-1:exon:5260;Parent=Msa0878390-mRNA-1
chr6_1	exon	19298277	19298429	19298277	ID=Msa0878390-mRNA-1:exon:5259;Parent=Msa0878390-mRNA-1
chr6_1	exon	19297886	19297999	19297886	ID=Msa0878390-mRNA-1:exon:5258;Parent=Msa0878390-mRNA-1
chr6_1	exon	19297714	19297879	19297714	ID=Msa0878390-mRNA-1:exon:5257;Parent=Msa0878390-mRNA-1
chr6_1	exon	19294183	19294419	19294183	ID=Msa0878390-mRNA-1:exon:5256;Parent=Msa0878390-mRNA-1
chr6_1	exon	19293544	19293872	19293544	ID=Msa0878390-mRNA-1:exon:5255;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19298439	19298654	19298439	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19298277	19298429	19298277	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19297886	19297999	19297886	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19297714	19297879	19297714	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19294183	19294419	19294183	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1
chr6_1	CDS	19293544	19293872	19293544	ID=Msa0878390-mRNA-1:cds;Parent=Msa0878390-mRNA-1

Gene Sequence

>Msa0878390

ATGGCTGAGTCACAGGGTGGTGATGGTAGTAGTTCGGGAAACAGGCGCAATAAAAGCGCAAATGCTGCTGCAAAGCGTGCAATAGCAAGAGCAACACAAGATGAACCGGTTATTACGCCGTGTGGTGCTTGCAAGTTCTTGAGGAGGAAGTGTAGCAGTGGATGCATCTTTGCACCCTACTTTGGTACTGACCAAGGTGCGGCTAAGTTTGCGGCTGTGTTTGGTGCTAGCAATGTGTCTAAGCACTTGTCCAACATTCCCGCTAGCCATCGCCAAGAAGCTGCGGCGACTATTTCCTATGAGGCTCAAGCTAGGCTAGCTGATCCGGTTTATGGCTGTGTGTCCACCCTTCTTGCTTTGCAGCAACAGGTGGCAGCTATGCAAGCAGAGGTCTCGATGATGCAAACTCAATTGATGAATAGGAGGCTTGCATATGCAAATGCAAGTACTCTTCAAGCCCCATATCAGCCGCCGTTTCAACTGCAACCAAACTTCAATGTACCTGTGCAGCCAGCATATTCCAACAACTCATCTGCTTCCACCACCAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGGTCTCACAATGGAGACGGCACCTTCATCACAGAGCTTAGAGCCTTTTCAAAACTCCAGGATGTCTCATAAATCGACACCGTGTGGGGCTTGCAAGCACTTGAAGAAGAAGTGTAGTAATGGATGCATCTTTGCACCCTACTTTGGTAAAAAACAAAATGAAGCTAGCTTTGCAGATGTGCACAAGGTCTTTGGAGCTGCCAATGTGTCGAAGCTCTTGTCCACTATTCCAACTAACCACCGCAAAAAAGCAATGGAGACTATGACCTATGAGGCTCAGGCTAGGATGTCTGATCCAATTAATGAGATCTCAATGATGAAAGCTCAGCAGACGAACAACGGATTTGCATATGCGAATGCCCTTCAGACCACAGACCTGCAGCATCAGCAAATGCTACAGCAACCAAACTTCAATGCCTCTGTGCAACCAGCATACTCCAACAATCCATCTCCTTCCATCGACGATCTCATGAACATGAACAACTTCAACCCTGTTCTTGCTGCCACCAACAACCTTATGAACATGAACAACTTCAACCCTGGTTTTGATATCACAATGGAGACAGCATCCTCATCACAGAGCTTTGAGCCTTTTCAAAACTCCAGGTTCTCTTATCATCAGGGAGACAATTAA

Protein sequence

>Msa0878390

MAESQGGDGSSSGNRRNKSANAAAKRAIARATQDEPVITPCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVFGASNVSKHLSNIPASHRQEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAEVSMMQTQLMNRRLAYANASTLQAPYQPPFQLQPNFNVPVQPAYSNNSSASTTNLMNMNNFNPGFGLTMETAPSSQSLEPFQNSRMSHKSTPCGACKHLKKKCSNGCIFAPYFGKKQNEASFADVHKVFGAANVSKLLSTIPTNHRKKAMETMTYEAQARMSDPINEISMMKAQQTNNGFAYANALQTTDLQHQQMLQQPNFNASVQPAYSNNPSPSIDDLMNMNNFNPVLAATNNLMNMNNFNPGFDITMETASSSQSFEPFQNSRFSYHQGDN*