Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879730 | XP_039684204.1 | 93.976 | 249 | 15 | 0 | 1 | 249 | 1 | 249 | 8.72e-172 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879730 | sp|Q1G3Q4|RITF1_ARATH | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.76e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879730 | A0A072V7G2 | 93.574 | 249 | 16 | 0 | 1 | 249 | 92 | 340 | 4.97e-172 | 486 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0879730 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879730 | MtrunA17_Chr7g0230511 | 94.309 | 246 | 14 | 0 | 4 | 249 | 2 | 247 | 2.41e-174 | 479 |
| Msa0879730 | MtrunA17_Chr2g0297251 | 43.154 | 241 | 114 | 6 | 11 | 248 | 37 | 257 | 1.07e-58 | 186 |
| Msa0879730 | MtrunA17_Chr4g0065041 | 39.300 | 257 | 124 | 5 | 11 | 248 | 8 | 251 | 6.48e-58 | 184 |
| Msa0879730 | MtrunA17_Chr4g0040071 | 33.333 | 240 | 112 | 5 | 11 | 248 | 15 | 208 | 2.57e-38 | 133 |
| Msa0879730 | MtrunA17_Chr5g0411151 | 33.745 | 243 | 115 | 5 | 8 | 248 | 32 | 230 | 3.48e-37 | 130 |
| Msa0879730 | MtrunA17_Chr5g0395181 | 43.284 | 134 | 74 | 2 | 11 | 142 | 21 | 154 | 9.47e-36 | 126 |
| Msa0879730 | MtrunA17_Chr8g0366581 | 43.077 | 130 | 72 | 2 | 8 | 135 | 30 | 159 | 4.25e-34 | 122 |
| Msa0879730 | MtrunA17_Chr1g0179781 | 32.099 | 243 | 116 | 8 | 9 | 248 | 5 | 201 | 4.41e-34 | 122 |
| Msa0879730 | MtrunA17_Chr7g0265291 | 42.754 | 138 | 74 | 3 | 9 | 141 | 5 | 142 | 9.78e-34 | 120 |
| Msa0879730 | MtrunA17_Chr2g0320521 | 28.063 | 253 | 145 | 9 | 9 | 249 | 5 | 232 | 2.45e-25 | 99.8 |
| Msa0879730 | MtrunA17_Chr4g0052451 | 53.571 | 84 | 32 | 1 | 61 | 137 | 10 | 93 | 3.64e-25 | 95.5 |
| Msa0879730 | MtrunA17_Chr4g0020811 | 37.333 | 150 | 78 | 5 | 9 | 142 | 5 | 154 | 1.21e-22 | 90.9 |
| Msa0879730 | MtrunA17_Chr2g0308401 | 36.667 | 150 | 79 | 5 | 9 | 142 | 3 | 152 | 3.51e-22 | 89.4 |
| Msa0879730 | MtrunA17_Chr2g0320561 | 34.483 | 145 | 84 | 4 | 10 | 143 | 4 | 148 | 4.70e-22 | 91.3 |
| Msa0879730 | MtrunA17_Chr8g0392151 | 29.655 | 145 | 79 | 3 | 13 | 135 | 15 | 158 | 6.28e-20 | 85.5 |
| Msa0879730 | MtrunA17_Chr4g0052461 | 49.123 | 57 | 29 | 0 | 8 | 64 | 19 | 75 | 1.75e-17 | 74.7 |
| Msa0879730 | MtrunA17_Chr2g0320551 | 33.333 | 138 | 81 | 4 | 10 | 136 | 4 | 141 | 1.85e-17 | 77.4 |
| Msa0879730 | MtrunA17_Chr1g0161601 | 47.561 | 82 | 41 | 2 | 7 | 88 | 44 | 123 | 1.24e-15 | 71.6 |
| Msa0879730 | MtrunA17_Chr5g0434331 | 31.884 | 138 | 80 | 6 | 11 | 140 | 43 | 174 | 4.44e-15 | 71.6 |
| Msa0879730 | MtrunA17_Chr8g0386511 | 30.345 | 145 | 91 | 5 | 49 | 185 | 4 | 146 | 2.90e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879730 | AT3G60670.1 | 54.251 | 247 | 97 | 7 | 11 | 249 | 7 | 245 | 6.43e-84 | 251 |
| Msa0879730 | AT2G12646.3 | 41.961 | 255 | 126 | 5 | 11 | 248 | 3 | 252 | 4.63e-57 | 182 |
| Msa0879730 | AT2G12646.1 | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.84e-57 | 182 |
| Msa0879730 | AT2G12646.2 | 41.961 | 255 | 126 | 5 | 11 | 248 | 6 | 255 | 4.84e-57 | 182 |
| Msa0879730 | AT1G31040.1 | 41.004 | 239 | 125 | 4 | 11 | 248 | 19 | 242 | 9.19e-55 | 176 |
| Msa0879730 | AT1G21000.1 | 34.025 | 241 | 146 | 7 | 11 | 248 | 16 | 246 | 6.31e-36 | 128 |
| Msa0879730 | AT1G21000.2 | 34.025 | 241 | 146 | 7 | 11 | 248 | 13 | 243 | 6.86e-36 | 128 |
| Msa0879730 | AT1G32700.1 | 44.697 | 132 | 71 | 2 | 11 | 140 | 12 | 143 | 3.79e-34 | 122 |
| Msa0879730 | AT4G17900.1 | 31.837 | 245 | 114 | 8 | 8 | 248 | 31 | 226 | 1.12e-33 | 122 |
| Msa0879730 | AT4G17900.2 | 31.837 | 245 | 114 | 8 | 8 | 248 | 17 | 212 | 1.32e-33 | 121 |
| Msa0879730 | AT1G76590.1 | 32.917 | 240 | 147 | 7 | 11 | 248 | 18 | 245 | 9.82e-32 | 117 |
| Msa0879730 | AT2G01818.1 | 31.600 | 250 | 120 | 8 | 12 | 249 | 12 | 222 | 2.10e-31 | 115 |
| Msa0879730 | AT1G43000.1 | 32.520 | 246 | 124 | 8 | 9 | 248 | 7 | 216 | 1.63e-29 | 110 |
| Msa0879730 | AT1G43000.2 | 32.520 | 246 | 124 | 8 | 9 | 248 | 14 | 223 | 1.76e-29 | 110 |
| Msa0879730 | AT2G27930.1 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 6.04e-29 | 108 |
| Msa0879730 | AT2G27930.4 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 6.04e-29 | 108 |
| Msa0879730 | AT2G27930.3 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 6.98e-29 | 107 |
| Msa0879730 | AT2G27930.2 | 40.876 | 137 | 69 | 3 | 11 | 135 | 4 | 140 | 6.98e-29 | 107 |
| Msa0879730 | AT5G46710.3 | 38.406 | 138 | 82 | 3 | 8 | 142 | 9 | 146 | 2.21e-26 | 102 |
| Msa0879730 | AT5G46710.1 | 38.406 | 138 | 82 | 3 | 8 | 142 | 25 | 162 | 3.55e-26 | 102 |
| Msa0879730 | AT5G46710.2 | 39.695 | 131 | 76 | 3 | 8 | 135 | 25 | 155 | 6.30e-26 | 100 |
| Msa0879730 | AT1G32700.2 | 45.192 | 104 | 55 | 2 | 39 | 140 | 1 | 104 | 9.28e-25 | 97.1 |
| Msa0879730 | AT2G27930.5 | 43.529 | 85 | 38 | 1 | 61 | 135 | 59 | 143 | 5.04e-17 | 77.0 |
| Msa0879730 | AT2G27930.6 | 43.529 | 85 | 38 | 1 | 61 | 135 | 59 | 143 | 5.04e-17 | 77.0 |
| Msa0879730 | AT2G01818.2 | 42.308 | 78 | 38 | 2 | 66 | 136 | 6 | 83 | 7.52e-13 | 65.1 |
Find 53 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACATTTGGTTCACTATC+TGG | 0.237092 | 6_1:-22481705 | Msa0879730:CDS |
| GTAAGGGTCTTGAAGACTTC+TGG | 0.303743 | 6_1:+22482295 | None:intergenic |
| CTCGCCCGTGTCGGAAATTT+CGG | 0.305194 | 6_1:-22481448 | Msa0879730:CDS |
| GAGGAGCATCTCTTTGGAAT+TGG | 0.338342 | 6_1:+22482341 | None:intergenic |
| TTGCTTGAGGAGCATCTCTT+TGG | 0.338603 | 6_1:+22482335 | None:intergenic |
| TGCCTCTCACAGACTCTTGC+AGG | 0.346256 | 6_1:-22482782 | Msa0879730:intron |
| AACCGAACTTCATCCGGTTC+CGG | 0.371774 | 6_1:-22481585 | Msa0879730:CDS |
| AGTCACTTGGTGAAAACATT+TGG | 0.391874 | 6_1:-22481717 | Msa0879730:CDS |
| GAGAGAGAACAGAATTTGTA+AGG | 0.394736 | 6_1:+22482278 | None:intergenic |
| CACCGGAACCGGATGAAGTT+CGG | 0.397970 | 6_1:+22481583 | None:intergenic |
| AGCCAAAGTGGAACAACATT+TGG | 0.404254 | 6_1:+22482931 | None:intergenic |
| TTTCGGAGAGTCTGATGAAT+AGG | 0.410510 | 6_1:-22481431 | Msa0879730:CDS |
| GGTTCAAACCGAACTTCATC+CGG | 0.422747 | 6_1:-22481591 | Msa0879730:CDS |
| ATGCCACCATTATCTGATTC+TGG | 0.428827 | 6_1:-22481660 | Msa0879730:CDS |
| CACCAAATGTTGTTCCACTT+TGG | 0.432537 | 6_1:-22482933 | Msa0879730:CDS |
| GAGGATGTATCCACCGGAAC+CGG | 0.447568 | 6_1:+22481572 | None:intergenic |
| CGGTAGTAGCGGTGCAAGCA+AGG | 0.456996 | 6_1:+22481532 | None:intergenic |
| GGATGAAGTTCGGTTTGAAC+CGG | 0.475769 | 6_1:+22481593 | None:intergenic |
| GCCTGCATGCTCGCCCGTGT+CGG | 0.482367 | 6_1:-22481457 | Msa0879730:CDS |
| TCTAGTCCAGAATCAGATAA+TGG | 0.486066 | 6_1:+22481654 | None:intergenic |
| GATGGTTCGAGAACCGAGTC+AGG | 0.499983 | 6_1:+22481615 | None:intergenic |
| TCCGACACGGGCGAGCATGC+AGG | 0.502115 | 6_1:+22481456 | None:intergenic |
| GTTGTCCGAAAGAAAAGAAC+CGG | 0.516356 | 6_1:-22481507 | Msa0879730:CDS |
| ATTCTGTTCTCTCTCTTGCA+AGG | 0.523330 | 6_1:-22482270 | Msa0879730:intron |
| GACTCGGTTCTCGAACCATC+CGG | 0.529624 | 6_1:-22481612 | Msa0879730:CDS |
| GTCTTGAAGACTTCTGGCAC+AGG | 0.531073 | 6_1:+22482301 | None:intergenic |
| CTACAGTTCTACAGAACAAA+CGG | 0.540640 | 6_1:-22482392 | Msa0879730:intron |
| CGGTCTAATGACACCTGACT+CGG | 0.553504 | 6_1:-22481628 | Msa0879730:CDS |
| AGCATCACTTGAAGCCAAAG+TGG | 0.554106 | 6_1:+22482919 | None:intergenic |
| CGAACTTCATCCGGTTCCGG+TGG | 0.558699 | 6_1:-22481582 | Msa0879730:CDS |
| ATCAATGAGGATGTATCCAC+CGG | 0.564291 | 6_1:+22481566 | None:intergenic |
| CGGAGAGTCTGATGAATAGG+AGG | 0.568363 | 6_1:-22481428 | Msa0879730:CDS |
| TGCTTGCACCGCTACTACCG+AGG | 0.570706 | 6_1:-22481529 | Msa0879730:CDS |
| GGTAGTAGCGGTGCAAGCAA+GGG | 0.580460 | 6_1:+22481533 | None:intergenic |
| AGTCTGATGAATAGGAGGAA+AGG | 0.580615 | 6_1:-22481423 | Msa0879730:CDS |
| CTCTCCGAAATTTCCGACAC+GGG | 0.597513 | 6_1:+22481444 | None:intergenic |
| GAAGTTCGGTTTGAACCGGA+TGG | 0.598179 | 6_1:+22481597 | None:intergenic |
| GGTTCTGCAGATATTGCTTG+AGG | 0.599864 | 6_1:+22482322 | None:intergenic |
| CAATATAACGGGGCTCTATG+CGG | 0.600520 | 6_1:+22481396 | None:intergenic |
| AGAATCAGATAATGGTGGCA+TGG | 0.607517 | 6_1:+22481662 | None:intergenic |
| GGCGAGCATGCAGGCCGACA+CGG | 0.612985 | 6_1:+22481465 | None:intergenic |
| TCTGATTCTGGACTAGATGA+CGG | 0.614207 | 6_1:-22481648 | Msa0879730:CDS |
| AGAGAGAACAGAATTTGTAA+GGG | 0.616060 | 6_1:+22482279 | None:intergenic |
| AGTAGCGGTGCAAGCAAGGG+CGG | 0.618674 | 6_1:+22481536 | None:intergenic |
| TCGGACAACCTCGGTAGTAG+CGG | 0.624276 | 6_1:+22481521 | None:intergenic |
| AAGAGTCTGTGAGAGGCATG+AGG | 0.626300 | 6_1:+22482787 | None:intergenic |
| AACCTGCAAGAGTCTGTGAG+AGG | 0.674351 | 6_1:+22482780 | None:intergenic |
| TCACTTTCAGACCACCGTGT+CGG | 0.675615 | 6_1:-22481479 | Msa0879730:CDS |
| AGTCCAGAATCAGATAATGG+TGG | 0.683117 | 6_1:+22481657 | None:intergenic |
| ACTCTCCGAAATTTCCGACA+CGG | 0.690319 | 6_1:+22481443 | None:intergenic |
| TGGTCTGAAAGTGATGACAC+CGG | 0.725820 | 6_1:+22481488 | None:intergenic |
| GAGCATGCAGGCCGACACGG+TGG | 0.731481 | 6_1:+22481468 | None:intergenic |
| GCATGAGGAGAAACACAGTG+AGG | 0.772523 | 6_1:+22482802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTATATCAATAAAT+GGG | + | chr6_1:22481635-22481654 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTATATCAATAAA+TGG | + | chr6_1:22481636-22481655 | None:intergenic | 10.0% |
| !! | ATATATTAAACTATGTATAT+TGG | - | chr6_1:22482110-22482129 | Msa0879730:intron | 10.0% |
| !!! | CATTTTTTTTTGTTATTTTA+TGG | - | chr6_1:22482863-22482882 | Msa0879730:CDS | 10.0% |
| !!! | TTTTTAGTATATCAATAAAT+GGG | + | chr6_1:22481635-22481654 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTATATCAATAAA+TGG | + | chr6_1:22481636-22481655 | None:intergenic | 10.0% |
| !! | ATATATTAAACTATGTATAT+TGG | - | chr6_1:22482110-22482129 | Msa0879730:intron | 10.0% |
| !!! | CATTTTTTTTTGTTATTTTA+TGG | - | chr6_1:22482863-22482882 | Msa0879730:CDS | 10.0% |
| !! | TGAAAAAAATGTTTATTGTT+TGG | - | chr6_1:22481776-22481795 | Msa0879730:intron | 15.0% |
| !!! | TTTTTCAGTTTATAAGATTT+TGG | - | chr6_1:22482054-22482073 | Msa0879730:intron | 15.0% |
| !! | TGAAAAAAATGTTTATTGTT+TGG | - | chr6_1:22481776-22481795 | Msa0879730:intron | 15.0% |
| !!! | TTTTTCAGTTTATAAGATTT+TGG | - | chr6_1:22482054-22482073 | Msa0879730:intron | 15.0% |
| !!! | ATTTCTCTCTTTTTTTTTGT+TGG | - | chr6_1:22481593-22481612 | Msa0879730:CDS | 20.0% |
| !!! | ATGTGTATCATGATATTTTA+AGG | - | chr6_1:22481974-22481993 | Msa0879730:intron | 20.0% |
| !!! | TATCATGATATTTTAAGGAT+GGG | - | chr6_1:22481979-22481998 | Msa0879730:intron | 20.0% |
| !!! | TTCAATTTTTAGTGTATGTT+TGG | - | chr6_1:22482410-22482429 | Msa0879730:intron | 20.0% |
| !!! | TACAATGATTTTATCATGTT+TGG | - | chr6_1:22482451-22482470 | Msa0879730:intron | 20.0% |
| !! | ATATTCAATTCGTGTAAAAT+TGG | + | chr6_1:22482585-22482604 | None:intergenic | 20.0% |
| !!! | ATGTTGAATTTAGTTTTAGT+TGG | - | chr6_1:22482633-22482652 | Msa0879730:CDS | 20.0% |
| !! | AAAAAATATGACGATGAAAA+TGG | + | chr6_1:22482691-22482710 | None:intergenic | 20.0% |
| !!! | TAATTGTTTGTCTGATTTTA+TGG | + | chr6_1:22482793-22482812 | None:intergenic | 20.0% |
| !!! | ATTTCTCTCTTTTTTTTTGT+TGG | - | chr6_1:22481593-22481612 | Msa0879730:CDS | 20.0% |
| !!! | ATGTGTATCATGATATTTTA+AGG | - | chr6_1:22481974-22481993 | Msa0879730:intron | 20.0% |
| !!! | TATCATGATATTTTAAGGAT+GGG | - | chr6_1:22481979-22481998 | Msa0879730:intron | 20.0% |
| !!! | TTCAATTTTTAGTGTATGTT+TGG | - | chr6_1:22482410-22482429 | Msa0879730:intron | 20.0% |
| !!! | TACAATGATTTTATCATGTT+TGG | - | chr6_1:22482451-22482470 | Msa0879730:intron | 20.0% |
| !! | ATATTCAATTCGTGTAAAAT+TGG | + | chr6_1:22482585-22482604 | None:intergenic | 20.0% |
| !!! | ATGTTGAATTTAGTTTTAGT+TGG | - | chr6_1:22482633-22482652 | Msa0879730:CDS | 20.0% |
| !! | AAAAAATATGACGATGAAAA+TGG | + | chr6_1:22482691-22482710 | None:intergenic | 20.0% |
| !!! | TAATTGTTTGTCTGATTTTA+TGG | + | chr6_1:22482793-22482812 | None:intergenic | 20.0% |
| !!! | TAGTTGAATTTTGATGTGTA+AGG | + | chr6_1:22481463-22481482 | None:intergenic | 25.0% |
| ! | ATCAAAATTCAACTAAACCA+TGG | - | chr6_1:22481468-22481487 | Msa0879730:CDS | 25.0% |
| ! | AGTAAAATATAGAAACACCA+TGG | + | chr6_1:22481488-22481507 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | - | chr6_1:22481528-22481547 | Msa0879730:CDS | 25.0% |
| ! | AAATCAAGAAAGAGAAAGAA+GGG | + | chr6_1:22481882-22481901 | None:intergenic | 25.0% |
| ! | AAAATCAAGAAAGAGAAAGA+AGG | + | chr6_1:22481883-22481902 | None:intergenic | 25.0% |
| !!! | GTATCATGATATTTTAAGGA+TGG | - | chr6_1:22481978-22481997 | Msa0879730:intron | 25.0% |
| !! | TCTATTCAAGTAAGTGATTT+TGG | - | chr6_1:22482030-22482049 | Msa0879730:intron | 25.0% |
| !! | TACCACAATTAATTTTGTGT+TGG | - | chr6_1:22482192-22482211 | Msa0879730:intron | 25.0% |
| ! | AGATTAAATATGAATGTGAG+AGG | + | chr6_1:22482386-22482405 | None:intergenic | 25.0% |
| !!! | TAGTTGAATTTTGATGTGTA+AGG | + | chr6_1:22481463-22481482 | None:intergenic | 25.0% |
| ! | ATCAAAATTCAACTAAACCA+TGG | - | chr6_1:22481468-22481487 | Msa0879730:CDS | 25.0% |
| ! | AGTAAAATATAGAAACACCA+TGG | + | chr6_1:22481488-22481507 | None:intergenic | 25.0% |
| !!! | TTCCTATTTTAGTATCTTGT+TGG | - | chr6_1:22481528-22481547 | Msa0879730:CDS | 25.0% |
| ! | AAATCAAGAAAGAGAAAGAA+GGG | + | chr6_1:22481882-22481901 | None:intergenic | 25.0% |
| ! | AAAATCAAGAAAGAGAAAGA+AGG | + | chr6_1:22481883-22481902 | None:intergenic | 25.0% |
| !!! | GTATCATGATATTTTAAGGA+TGG | - | chr6_1:22481978-22481997 | Msa0879730:intron | 25.0% |
| !! | TCTATTCAAGTAAGTGATTT+TGG | - | chr6_1:22482030-22482049 | Msa0879730:intron | 25.0% |
| !! | TACCACAATTAATTTTGTGT+TGG | - | chr6_1:22482192-22482211 | Msa0879730:intron | 25.0% |
| ! | AGATTAAATATGAATGTGAG+AGG | + | chr6_1:22482386-22482405 | None:intergenic | 25.0% |
| TGTGTAAGGAGAAAAGAAAA+TGG | + | chr6_1:22481449-22481468 | None:intergenic | 30.0% | |
| GACCAACAAGATACTAAAAT+AGG | + | chr6_1:22481533-22481552 | None:intergenic | 30.0% | |
| CACCAACACAAAATTAATTG+TGG | + | chr6_1:22482197-22482216 | None:intergenic | 30.0% | |
| AGAGAGAACAGAATTTGTAA+GGG | + | chr6_1:22482345-22482364 | None:intergenic | 30.0% | |
| ! | AAAACATTTGGTTCACTATC+TGG | - | chr6_1:22482916-22482935 | Msa0879730:CDS | 30.0% |
| TGTGTAAGGAGAAAAGAAAA+TGG | + | chr6_1:22481449-22481468 | None:intergenic | 30.0% | |
| GACCAACAAGATACTAAAAT+AGG | + | chr6_1:22481533-22481552 | None:intergenic | 30.0% | |
| CACCAACACAAAATTAATTG+TGG | + | chr6_1:22482197-22482216 | None:intergenic | 30.0% | |
| AGAGAGAACAGAATTTGTAA+GGG | + | chr6_1:22482345-22482364 | None:intergenic | 30.0% | |
| ! | AAAACATTTGGTTCACTATC+TGG | - | chr6_1:22482916-22482935 | Msa0879730:CDS | 30.0% |
| AGAAAGAGAAAGAAGGGTTA+AGG | + | chr6_1:22481876-22481895 | None:intergenic | 35.0% | |
| CTACAGTTCTACAGAACAAA+CGG | - | chr6_1:22482229-22482248 | Msa0879730:intron | 35.0% | |
| GAGAGAGAACAGAATTTGTA+AGG | + | chr6_1:22482346-22482365 | None:intergenic | 35.0% | |
| ! | TTTATGGTTGTGTTTTCCAC+AGG | - | chr6_1:22482879-22482898 | Msa0879730:CDS | 35.0% |
| ! | AGTCACTTGGTGAAAACATT+TGG | - | chr6_1:22482904-22482923 | Msa0879730:CDS | 35.0% |
| TCTAGTCCAGAATCAGATAA+TGG | + | chr6_1:22482970-22482989 | None:intergenic | 35.0% | |
| AGAAAGAGAAAGAAGGGTTA+AGG | + | chr6_1:22481876-22481895 | None:intergenic | 35.0% | |
| CTACAGTTCTACAGAACAAA+CGG | - | chr6_1:22482229-22482248 | Msa0879730:intron | 35.0% | |
| GAGAGAGAACAGAATTTGTA+AGG | + | chr6_1:22482346-22482365 | None:intergenic | 35.0% | |
| ! | TTTATGGTTGTGTTTTCCAC+AGG | - | chr6_1:22482879-22482898 | Msa0879730:CDS | 35.0% |
| ! | AGTCACTTGGTGAAAACATT+TGG | - | chr6_1:22482904-22482923 | Msa0879730:CDS | 35.0% |
| TCTAGTCCAGAATCAGATAA+TGG | + | chr6_1:22482970-22482989 | None:intergenic | 35.0% | |
| CACCAAATGTTGTTCCACTT+TGG | - | chr6_1:22481688-22481707 | Msa0879730:CDS | 40.0% | |
| AGCCAAAGTGGAACAACATT+TGG | + | chr6_1:22481693-22481712 | None:intergenic | 40.0% | |
| ATTCTGTTCTCTCTCTTGCA+AGG | - | chr6_1:22482351-22482370 | Msa0879730:CDS | 40.0% | |
| ! | AGAATCAGATAATGGTGGCA+TGG | + | chr6_1:22482962-22482981 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | - | chr6_1:22482961-22482980 | Msa0879730:intron | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | + | chr6_1:22482967-22482986 | None:intergenic | 40.0% |
| ! | TCTGATTCTGGACTAGATGA+CGG | - | chr6_1:22482973-22482992 | Msa0879730:intron | 40.0% |
| ATCAATGAGGATGTATCCAC+CGG | + | chr6_1:22483058-22483077 | None:intergenic | 40.0% | |
| ! | TCTTTTCTTTCGGACAACCT+CGG | + | chr6_1:22483112-22483131 | None:intergenic | 40.0% |
| GTTGTCCGAAAGAAAAGAAC+CGG | - | chr6_1:22483114-22483133 | Msa0879730:intron | 40.0% | |
| !!! | TGACACCGGTTCTTTTCTTT+CGG | + | chr6_1:22483122-22483141 | None:intergenic | 40.0% |
| TTTCGGAGAGTCTGATGAAT+AGG | - | chr6_1:22483190-22483209 | Msa0879730:intron | 40.0% | |
| AGTCTGATGAATAGGAGGAA+AGG | - | chr6_1:22483198-22483217 | Msa0879730:intron | 40.0% | |
| CACCAAATGTTGTTCCACTT+TGG | - | chr6_1:22481688-22481707 | Msa0879730:CDS | 40.0% | |
| AGCCAAAGTGGAACAACATT+TGG | + | chr6_1:22481693-22481712 | None:intergenic | 40.0% | |
| ATTCTGTTCTCTCTCTTGCA+AGG | - | chr6_1:22482351-22482370 | Msa0879730:CDS | 40.0% | |
| ! | AGAATCAGATAATGGTGGCA+TGG | + | chr6_1:22482962-22482981 | None:intergenic | 40.0% |
| ATGCCACCATTATCTGATTC+TGG | - | chr6_1:22482961-22482980 | Msa0879730:intron | 40.0% | |
| ! | AGTCCAGAATCAGATAATGG+TGG | + | chr6_1:22482967-22482986 | None:intergenic | 40.0% |
| ! | TCTGATTCTGGACTAGATGA+CGG | - | chr6_1:22482973-22482992 | Msa0879730:intron | 40.0% |
| ATCAATGAGGATGTATCCAC+CGG | + | chr6_1:22483058-22483077 | None:intergenic | 40.0% | |
| ! | TCTTTTCTTTCGGACAACCT+CGG | + | chr6_1:22483112-22483131 | None:intergenic | 40.0% |
| GTTGTCCGAAAGAAAAGAAC+CGG | - | chr6_1:22483114-22483133 | Msa0879730:intron | 40.0% | |
| !!! | TGACACCGGTTCTTTTCTTT+CGG | + | chr6_1:22483122-22483141 | None:intergenic | 40.0% |
| TTTCGGAGAGTCTGATGAAT+AGG | - | chr6_1:22483190-22483209 | Msa0879730:intron | 40.0% | |
| AGTCTGATGAATAGGAGGAA+AGG | - | chr6_1:22483198-22483217 | Msa0879730:intron | 40.0% | |
| AGCATCACTTGAAGCCAAAG+TGG | + | chr6_1:22481705-22481724 | None:intergenic | 45.0% | |
| !! | GAGGAGCATCTCTTTGGAAT+TGG | + | chr6_1:22482283-22482302 | None:intergenic | 45.0% |
| !! | TTGCTTGAGGAGCATCTCTT+TGG | + | chr6_1:22482289-22482308 | None:intergenic | 45.0% |
| GGTTCTGCAGATATTGCTTG+AGG | + | chr6_1:22482302-22482321 | None:intergenic | 45.0% | |
| GTAAGGGTCTTGAAGACTTC+TGG | + | chr6_1:22482329-22482348 | None:intergenic | 45.0% | |
| ! | TTTTCCACAGGTGAGTCACT+TGG | - | chr6_1:22482891-22482910 | Msa0879730:CDS | 45.0% |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | + | chr6_1:22483031-22483050 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | - | chr6_1:22483030-22483049 | Msa0879730:intron | 45.0% | |
| TGGTCTGAAAGTGATGACAC+CGG | + | chr6_1:22483136-22483155 | None:intergenic | 45.0% | |
| ACTCTCCGAAATTTCCGACA+CGG | + | chr6_1:22483181-22483200 | None:intergenic | 45.0% | |
| ! | CAATATAACGGGGCTCTATG+CGG | + | chr6_1:22483228-22483247 | None:intergenic | 45.0% |
| AGCATCACTTGAAGCCAAAG+TGG | + | chr6_1:22481705-22481724 | None:intergenic | 45.0% | |
| !! | GAGGAGCATCTCTTTGGAAT+TGG | + | chr6_1:22482283-22482302 | None:intergenic | 45.0% |
| !! | TTGCTTGAGGAGCATCTCTT+TGG | + | chr6_1:22482289-22482308 | None:intergenic | 45.0% |
| GGTTCTGCAGATATTGCTTG+AGG | + | chr6_1:22482302-22482321 | None:intergenic | 45.0% | |
| GTAAGGGTCTTGAAGACTTC+TGG | + | chr6_1:22482329-22482348 | None:intergenic | 45.0% | |
| ! | TTTTCCACAGGTGAGTCACT+TGG | - | chr6_1:22482891-22482910 | Msa0879730:CDS | 45.0% |
| ! | GGATGAAGTTCGGTTTGAAC+CGG | + | chr6_1:22483031-22483050 | None:intergenic | 45.0% |
| GGTTCAAACCGAACTTCATC+CGG | - | chr6_1:22483030-22483049 | Msa0879730:intron | 45.0% | |
| TGGTCTGAAAGTGATGACAC+CGG | + | chr6_1:22483136-22483155 | None:intergenic | 45.0% | |
| ACTCTCCGAAATTTCCGACA+CGG | + | chr6_1:22483181-22483200 | None:intergenic | 45.0% | |
| ! | CAATATAACGGGGCTCTATG+CGG | + | chr6_1:22483228-22483247 | None:intergenic | 45.0% |
| !!! | TTTTTAGTAAATTAATAAAT+GGG | + | chr6_1:22481573-22481592 | None:intergenic | 5.0% |
| !!! | TTTTTTAGTAAATTAATAAA+TGG | + | chr6_1:22481574-22481593 | None:intergenic | 5.0% |
| !!! | TTTTTAGTAAATTAATAAAT+GGG | + | chr6_1:22481573-22481592 | None:intergenic | 5.0% |
| !!! | TTTTTTAGTAAATTAATAAA+TGG | + | chr6_1:22481574-22481593 | None:intergenic | 5.0% |
| GCATGAGGAGAAACACAGTG+AGG | + | chr6_1:22481822-22481841 | None:intergenic | 50.0% | |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | + | chr6_1:22481837-22481856 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | + | chr6_1:22481844-22481863 | None:intergenic | 50.0% | |
| GTCTTGAAGACTTCTGGCAC+AGG | + | chr6_1:22482323-22482342 | None:intergenic | 50.0% | |
| TTCACCAAGTGACTCACCTG+TGG | + | chr6_1:22482898-22482917 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+CGG | - | chr6_1:22482993-22483012 | Msa0879730:intron | 50.0% | |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | + | chr6_1:22483027-22483046 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+CGG | - | chr6_1:22483036-22483055 | Msa0879730:intron | 50.0% | |
| ! | GGGCGGTTTTGCAATCAATG+AGG | + | chr6_1:22483071-22483090 | None:intergenic | 50.0% |
| TCACTTTCAGACCACCGTGT+CGG | - | chr6_1:22483142-22483161 | Msa0879730:intron | 50.0% | |
| CTCTCCGAAATTTCCGACAC+GGG | + | chr6_1:22483180-22483199 | None:intergenic | 50.0% | |
| CGGAGAGTCTGATGAATAGG+AGG | - | chr6_1:22483193-22483212 | Msa0879730:intron | 50.0% | |
| GCATGAGGAGAAACACAGTG+AGG | + | chr6_1:22481822-22481841 | None:intergenic | 50.0% | |
| ! | AAGAGTCTGTGAGAGGCATG+AGG | + | chr6_1:22481837-22481856 | None:intergenic | 50.0% |
| AACCTGCAAGAGTCTGTGAG+AGG | + | chr6_1:22481844-22481863 | None:intergenic | 50.0% | |
| GTCTTGAAGACTTCTGGCAC+AGG | + | chr6_1:22482323-22482342 | None:intergenic | 50.0% | |
| TTCACCAAGTGACTCACCTG+TGG | + | chr6_1:22482898-22482917 | None:intergenic | 50.0% | |
| CGGTCTAATGACACCTGACT+CGG | - | chr6_1:22482993-22483012 | Msa0879730:intron | 50.0% | |
| ! | GAAGTTCGGTTTGAACCGGA+TGG | + | chr6_1:22483027-22483046 | None:intergenic | 50.0% |
| AACCGAACTTCATCCGGTTC+CGG | - | chr6_1:22483036-22483055 | Msa0879730:intron | 50.0% | |
| ! | GGGCGGTTTTGCAATCAATG+AGG | + | chr6_1:22483071-22483090 | None:intergenic | 50.0% |
| TCACTTTCAGACCACCGTGT+CGG | - | chr6_1:22483142-22483161 | Msa0879730:intron | 50.0% | |
| CTCTCCGAAATTTCCGACAC+GGG | + | chr6_1:22483180-22483199 | None:intergenic | 50.0% | |
| CGGAGAGTCTGATGAATAGG+AGG | - | chr6_1:22483193-22483212 | Msa0879730:intron | 50.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | - | chr6_1:22481839-22481858 | Msa0879730:intron | 55.0% | |
| GATGGTTCGAGAACCGAGTC+AGG | + | chr6_1:22483009-22483028 | None:intergenic | 55.0% | |
| ! | GACTCGGTTCTCGAACCATC+CGG | - | chr6_1:22483009-22483028 | Msa0879730:intron | 55.0% |
| CACCGGAACCGGATGAAGTT+CGG | + | chr6_1:22483041-22483060 | None:intergenic | 55.0% | |
| GAGGATGTATCCACCGGAAC+CGG | + | chr6_1:22483052-22483071 | None:intergenic | 55.0% | |
| GGTAGTAGCGGTGCAAGCAA+GGG | + | chr6_1:22483091-22483110 | None:intergenic | 55.0% | |
| TCGGACAACCTCGGTAGTAG+CGG | + | chr6_1:22483103-22483122 | None:intergenic | 55.0% | |
| CTCGCCCGTGTCGGAAATTT+CGG | - | chr6_1:22483173-22483192 | Msa0879730:intron | 55.0% | |
| TGCCTCTCACAGACTCTTGC+AGG | - | chr6_1:22481839-22481858 | Msa0879730:intron | 55.0% | |
| GATGGTTCGAGAACCGAGTC+AGG | + | chr6_1:22483009-22483028 | None:intergenic | 55.0% | |
| ! | GACTCGGTTCTCGAACCATC+CGG | - | chr6_1:22483009-22483028 | Msa0879730:intron | 55.0% |
| CACCGGAACCGGATGAAGTT+CGG | + | chr6_1:22483041-22483060 | None:intergenic | 55.0% | |
| GAGGATGTATCCACCGGAAC+CGG | + | chr6_1:22483052-22483071 | None:intergenic | 55.0% | |
| GGTAGTAGCGGTGCAAGCAA+GGG | + | chr6_1:22483091-22483110 | None:intergenic | 55.0% | |
| TCGGACAACCTCGGTAGTAG+CGG | + | chr6_1:22483103-22483122 | None:intergenic | 55.0% | |
| CTCGCCCGTGTCGGAAATTT+CGG | - | chr6_1:22483173-22483192 | Msa0879730:intron | 55.0% | |
| CGAACTTCATCCGGTTCCGG+TGG | - | chr6_1:22483039-22483058 | Msa0879730:intron | 60.0% | |
| AGTAGCGGTGCAAGCAAGGG+CGG | + | chr6_1:22483088-22483107 | None:intergenic | 60.0% | |
| CGGTAGTAGCGGTGCAAGCA+AGG | + | chr6_1:22483092-22483111 | None:intergenic | 60.0% | |
| TGCTTGCACCGCTACTACCG+AGG | - | chr6_1:22483092-22483111 | Msa0879730:intron | 60.0% | |
| CGAACTTCATCCGGTTCCGG+TGG | - | chr6_1:22483039-22483058 | Msa0879730:intron | 60.0% | |
| AGTAGCGGTGCAAGCAAGGG+CGG | + | chr6_1:22483088-22483107 | None:intergenic | 60.0% | |
| CGGTAGTAGCGGTGCAAGCA+AGG | + | chr6_1:22483092-22483111 | None:intergenic | 60.0% | |
| TGCTTGCACCGCTACTACCG+AGG | - | chr6_1:22483092-22483111 | Msa0879730:intron | 60.0% | |
| GAGCATGCAGGCCGACACGG+TGG | + | chr6_1:22483156-22483175 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | + | chr6_1:22483159-22483178 | None:intergenic | 70.0% | |
| GCCTGCATGCTCGCCCGTGT+CGG | - | chr6_1:22483164-22483183 | Msa0879730:intron | 70.0% | |
| TCCGACACGGGCGAGCATGC+AGG | + | chr6_1:22483168-22483187 | None:intergenic | 70.0% | |
| GAGCATGCAGGCCGACACGG+TGG | + | chr6_1:22483156-22483175 | None:intergenic | 70.0% | |
| GGCGAGCATGCAGGCCGACA+CGG | + | chr6_1:22483159-22483178 | None:intergenic | 70.0% | |
| GCCTGCATGCTCGCCCGTGT+CGG | - | chr6_1:22483164-22483183 | Msa0879730:intron | 70.0% | |
| TCCGACACGGGCGAGCATGC+AGG | + | chr6_1:22483168-22483187 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 22481395 | 22483248 | 22481395 | ID=Msa0879730;Name=Msa0879730 |
| chr6_1 | mRNA | 22481395 | 22483248 | 22481395 | ID=Msa0879730-mRNA-1;Parent=Msa0879730;Name=Msa0879730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|0.8|1|1|5|0|249 |
| chr6_1 | exon | 22483246 | 22483248 | 22483246 | ID=Msa0879730-mRNA-1:exon:6166;Parent=Msa0879730-mRNA-1 |
| chr6_1 | exon | 22482783 | 22482968 | 22482783 | ID=Msa0879730-mRNA-1:exon:6165;Parent=Msa0879730-mRNA-1 |
| chr6_1 | exon | 22482605 | 22482679 | 22482605 | ID=Msa0879730-mRNA-1:exon:6164;Parent=Msa0879730-mRNA-1 |
| chr6_1 | exon | 22482271 | 22482408 | 22482271 | ID=Msa0879730-mRNA-1:exon:6163;Parent=Msa0879730-mRNA-1 |
| chr6_1 | exon | 22481395 | 22481742 | 22481395 | ID=Msa0879730-mRNA-1:exon:6162;Parent=Msa0879730-mRNA-1 |
| chr6_1 | CDS | 22483246 | 22483248 | 22483246 | ID=Msa0879730-mRNA-1:cds;Parent=Msa0879730-mRNA-1 |
| chr6_1 | CDS | 22482783 | 22482968 | 22482783 | ID=Msa0879730-mRNA-1:cds;Parent=Msa0879730-mRNA-1 |
| chr6_1 | CDS | 22482605 | 22482679 | 22482605 | ID=Msa0879730-mRNA-1:cds;Parent=Msa0879730-mRNA-1 |
| chr6_1 | CDS | 22482271 | 22482408 | 22482271 | ID=Msa0879730-mRNA-1:cds;Parent=Msa0879730-mRNA-1 |
| chr6_1 | CDS | 22481395 | 22481742 | 22481395 | ID=Msa0879730-mRNA-1:cds;Parent=Msa0879730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
