Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879980 | XP_039686054.1 | 88.163 | 245 | 28 | 1 | 3 | 247 | 2 | 245 | 1.69e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879980 | sp|Q99091|CPRF3_PETCR | 40.860 | 93 | 52 | 1 | 152 | 241 | 183 | 275 | 6.40e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879980 | G7IST9 | 81.818 | 264 | 30 | 2 | 1 | 247 | 19 | 281 | 7.38e-148 | 423 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0879980 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879980 | MtrunA17_Chr1g0162721 | 75.225 | 222 | 46 | 5 | 31 | 247 | 90 | 307 | 9.49e-106 | 308 |
| Msa0879980 | MtrunA17_Chr1g0162721 | 74.286 | 35 | 9 | 0 | 4 | 38 | 3 | 37 | 1.61e-13 | 68.9 |
| Msa0879980 | MtrunA17_Chr2g0302481 | 66.667 | 210 | 44 | 2 | 38 | 247 | 5 | 188 | 1.74e-91 | 267 |
| Msa0879980 | MtrunA17_Chr2g0302501 | 74.545 | 110 | 10 | 2 | 1 | 93 | 19 | 127 | 4.83e-50 | 160 |
| Msa0879980 | MtrunA17_Chr4g0065261 | 61.798 | 89 | 33 | 1 | 159 | 247 | 88 | 175 | 3.93e-28 | 105 |
| Msa0879980 | MtrunA17_Chr8g0373571 | 47.500 | 80 | 42 | 0 | 162 | 241 | 260 | 339 | 4.96e-18 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0879980 | AT4G36730.2 | 41.250 | 80 | 47 | 0 | 162 | 241 | 220 | 299 | 1.06e-14 | 72.8 |
| Msa0879980 | AT4G36730.1 | 41.250 | 80 | 47 | 0 | 162 | 241 | 222 | 301 | 1.18e-14 | 72.4 |
| Msa0879980 | AT2G35530.1 | 41.176 | 68 | 40 | 0 | 162 | 229 | 305 | 372 | 1.90e-11 | 63.5 |
Find 44 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTAGACTGGCACAGAATT+TGG | 0.190875 | 6_1:+25969768 | Msa0879980:CDS |
| GATTTCCACTTCGTGCTTAA+AGG | 0.210924 | 6_1:-25969570 | None:intergenic |
| GCAAATAATTTGTTGAAATC+AGG | 0.241071 | 6_1:-25969192 | None:intergenic |
| TGGCAGACCTTACAATTTCT+TGG | 0.294838 | 6_1:+25968845 | Msa0879980:CDS |
| TGGAAATCTAACATGATTAC+TGG | 0.326793 | 6_1:+25969585 | Msa0879980:CDS |
| GATTTCAACAAATTATTTGC+TGG | 0.331658 | 6_1:+25969195 | Msa0879980:CDS |
| ACTGGCGAATCAAGAGAATA+TGG | 0.350738 | 6_1:+25969246 | Msa0879980:CDS |
| AAATTCTGTGCCAGTCTAGA+TGG | 0.385888 | 6_1:-25969766 | None:intergenic |
| TGGAACAGGAAGAGCTAGTT+AGG | 0.411729 | 6_1:+25971663 | Msa0879980:intron |
| AAGATCAAAGTTAAAGAAAC+AGG | 0.415399 | 6_1:+25970941 | Msa0879980:CDS |
| AATAGATCTGCAATTGATTC+TGG | 0.415707 | 6_1:-25971695 | None:intergenic |
| TCACGTTTCTTGAGCATGAC+GGG | 0.420537 | 6_1:+25968801 | None:intergenic |
| AAGAAAGAATCCATTCCATT+TGG | 0.432084 | 6_1:+25968825 | Msa0879980:CDS |
| TGTGGTAGTATAGGTGTGTT+TGG | 0.437228 | 6_1:-25968985 | None:intergenic |
| CCAGTCATTAAACTTACATC+AGG | 0.439376 | 6_1:-25969228 | None:intergenic |
| CACTCTTAAGGAAGACAATT+CGG | 0.440018 | 6_1:+25971207 | Msa0879980:CDS |
| CAAATAATTTGTTGAAATCA+GGG | 0.443190 | 6_1:-25969191 | None:intergenic |
| TGCACAGGCTTTCTCAGAAA+TGG | 0.443916 | 6_1:+25969155 | Msa0879980:CDS |
| CACACCTATACTACCACATT+GGG | 0.444425 | 6_1:+25968990 | Msa0879980:CDS |
| AAGACTGTCAAACAGGAAAT+CGG | 0.451393 | 6_1:+25970914 | Msa0879980:CDS |
| TCAAAAGATAGACACTCTTA+AGG | 0.455063 | 6_1:+25971195 | Msa0879980:CDS |
| GAAGAGCTAGTTAGGTTGTA+TGG | 0.478454 | 6_1:+25971671 | Msa0879980:CDS |
| GTATCCCAATGTGGTAGTAT+AGG | 0.486053 | 6_1:-25968994 | None:intergenic |
| TGAGGCACCAAGAAATTGTA+AGG | 0.489679 | 6_1:-25968852 | None:intergenic |
| AAATTGTAAGGTCTGCCAAA+TGG | 0.515741 | 6_1:-25968840 | None:intergenic |
| GGAAATCTAACATGATTACT+GGG | 0.531328 | 6_1:+25969586 | Msa0879980:CDS |
| CGATGAAAATGATTCTATTG+AGG | 0.536409 | 6_1:+25971279 | Msa0879980:CDS |
| GTAAGGTCTGCCAAATGGAA+TGG | 0.548289 | 6_1:-25968835 | None:intergenic |
| GGAAGCAAGAGATCGACAGA+TGG | 0.554192 | 6_1:+25969407 | Msa0879980:CDS |
| TCTAACATGATTACTGGGGA+TGG | 0.558549 | 6_1:+25969591 | Msa0879980:CDS |
| ACACACCTATACTACCACAT+TGG | 0.558988 | 6_1:+25968989 | Msa0879980:CDS |
| TGTAGAAAATCCATCTAGAC+TGG | 0.559052 | 6_1:+25969756 | Msa0879980:intron |
| CCACCACAAAAGTTTCAAGT+AGG | 0.565064 | 6_1:-25971728 | None:intergenic |
| CCTGATGTAAGTTTAATGAC+TGG | 0.574077 | 6_1:+25969228 | Msa0879980:CDS |
| TATGTGCACAGTGCAATAAG+TGG | 0.577404 | 6_1:+25969386 | Msa0879980:intron |
| GAATTTGGAGACAGTTGTCA+AGG | 0.581971 | 6_1:+25969783 | Msa0879980:CDS |
| ACATTGGGATACAACTATGC+AGG | 0.582030 | 6_1:+25969005 | Msa0879980:CDS |
| CATGATTTACCGACATCTTG+AGG | 0.589885 | 6_1:-25968870 | None:intergenic |
| ATTCTCCTTTAAGCACGAAG+TGG | 0.623187 | 6_1:+25969565 | Msa0879980:CDS |
| CACGTTTCTTGAGCATGACG+GGG | 0.626860 | 6_1:+25968802 | None:intergenic |
| GAACAATCTGTACCTCATTG+AGG | 0.632062 | 6_1:-25969307 | None:intergenic |
| TGCATAGTTGTATCCCAATG+TGG | 0.691783 | 6_1:-25969003 | None:intergenic |
| ATAGGGAAGGGACCTCAATG+AGG | 0.698466 | 6_1:+25969295 | Msa0879980:CDS |
| GAAATCTAACATGATTACTG+GGG | 0.706448 | 6_1:+25969587 | Msa0879980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATGTTTATACATTT+TGG | + | chr6_1:25969123-25969142 | Msa0879980:intron | 10.0% |
| !!! | TTAGTTTTTTTTATTCGTAA+AGG | - | chr6_1:25969092-25969111 | None:intergenic | 15.0% |
| !!! | GATTAGTTTTTATATAAATG+TGG | + | chr6_1:25969463-25969482 | Msa0879980:intron | 15.0% |
| !! | TTCCTTTCTTAAATTATTAT+CGG | - | chr6_1:25970153-25970172 | None:intergenic | 15.0% |
| !!! | GTATTATTTTCTTACATTTT+TGG | - | chr6_1:25970393-25970412 | None:intergenic | 15.0% |
| !! | TAAAATTCAACAAATAAGAA+GGG | - | chr6_1:25971321-25971340 | None:intergenic | 15.0% |
| !! | ATAAAATTCAACAAATAAGA+AGG | - | chr6_1:25971322-25971341 | None:intergenic | 15.0% |
| !! | ACAAATATTAGAAAATAAGA+TGG | - | chr6_1:25971410-25971429 | None:intergenic | 15.0% |
| !! | TTAAATAAACTAAGAAACAA+TGG | + | chr6_1:25971441-25971460 | Msa0879980:intron | 15.0% |
| !!! | CAAATAATTTGTTGAAATCA+GGG | - | chr6_1:25969194-25969213 | None:intergenic | 20.0% |
| !!! | CAACTGTCATATAAAATTTT+CGG | + | chr6_1:25969508-25969527 | Msa0879980:intron | 20.0% |
| !!! | AAGGATTTAATTAGACTTTT+TGG | - | chr6_1:25969534-25969553 | None:intergenic | 20.0% |
| !! | GAATCGAAAAAAAACTATTT+GGG | - | chr6_1:25971036-25971055 | None:intergenic | 20.0% |
| !! | AGAATCGAAAAAAAACTATT+TGG | - | chr6_1:25971037-25971056 | None:intergenic | 20.0% |
| !! | AAAATTCAACAAATAAGAAG+GGG | - | chr6_1:25971320-25971339 | None:intergenic | 20.0% |
| !! | ATTTGTGTTCAATTAGAAAA+AGG | + | chr6_1:25971384-25971403 | Msa0879980:intron | 20.0% |
| !! | AGAAATCAAAATAGTATTCA+GGG | + | chr6_1:25971471-25971490 | Msa0879980:intron | 20.0% |
| !!! | AATGTTTATACATTTTGGTC+AGG | + | chr6_1:25969128-25969147 | Msa0879980:intron | 25.0% |
| !!! | GCAAATAATTTGTTGAAATC+AGG | - | chr6_1:25969195-25969214 | None:intergenic | 25.0% |
| ! | GATTTCAACAAATTATTTGC+TGG | + | chr6_1:25969195-25969214 | Msa0879980:CDS | 25.0% |
| ! | TTCTTCACCAAAAAATGATA+GGG | + | chr6_1:25969278-25969297 | Msa0879980:CDS | 25.0% |
| !!! | AAGTTTTTTGTTCAGTCTTT+GGG | - | chr6_1:25969366-25969385 | None:intergenic | 25.0% |
| !!! | AAAGTTTTTTGTTCAGTCTT+TGG | - | chr6_1:25969367-25969386 | None:intergenic | 25.0% |
| ! | GTCTAATTAAATCCTTTATG+TGG | + | chr6_1:25969538-25969557 | Msa0879980:intron | 25.0% |
| ! | TGATGCTCAACTAAAAAATA+TGG | + | chr6_1:25969828-25969847 | Msa0879980:CDS | 25.0% |
| ! | ACATCATAATGATTCAAAAG+GGG | - | chr6_1:25969985-25970004 | None:intergenic | 25.0% |
| ! | GACATCATAATGATTCAAAA+GGG | - | chr6_1:25969986-25970005 | None:intergenic | 25.0% |
| ! | CACCGATAATAATTTAAGAA+AGG | + | chr6_1:25970148-25970167 | Msa0879980:intron | 25.0% |
| ! | AAGGAAAATGCTAAATGTTA+CGG | + | chr6_1:25970167-25970186 | Msa0879980:intron | 25.0% |
| ! | GGATTTGAGAAATAAGATTA+TGG | - | chr6_1:25970281-25970300 | None:intergenic | 25.0% |
| ! | GTAACATAGATTTAGAGAAA+TGG | + | chr6_1:25970460-25970479 | Msa0879980:intron | 25.0% |
| ! | AATTTATATGCATAGTGTGT+TGG | - | chr6_1:25970551-25970570 | None:intergenic | 25.0% |
| ! | GAATATGATTATAACTATGG+TGG | - | chr6_1:25970627-25970646 | None:intergenic | 25.0% |
| ! | CAGGAATATGATTATAACTA+TGG | - | chr6_1:25970630-25970649 | None:intergenic | 25.0% |
| ! | TACATATTTAGCTACAAAGT+TGG | - | chr6_1:25970796-25970815 | None:intergenic | 25.0% |
| ! | ACTTTGTAGCTAAATATGTA+TGG | + | chr6_1:25970796-25970815 | Msa0879980:intron | 25.0% |
| ! | AAACTTAGCAACATTAAGAA+CGG | - | chr6_1:25970845-25970864 | None:intergenic | 25.0% |
| ! | AAGATCAAAGTTAAAGAAAC+AGG | + | chr6_1:25970941-25970960 | Msa0879980:CDS | 25.0% |
| ! | ACGTAAAAAGAAAAAGATGT+TGG | + | chr6_1:25970999-25971018 | Msa0879980:intron | 25.0% |
| !! | CTCAATAGAATCATTTTCAT+CGG | - | chr6_1:25971281-25971300 | None:intergenic | 25.0% |
| ! | GAGAAATCAAAATAGTATTC+AGG | + | chr6_1:25971470-25971489 | Msa0879980:intron | 25.0% |
| !! | AGTAGCAATAATGGAAAATA+GGG | - | chr6_1:25971622-25971641 | None:intergenic | 25.0% |
| !! | TAGTAGCAATAATGGAAAAT+AGG | - | chr6_1:25971623-25971642 | None:intergenic | 25.0% |
| ! | ACTCAAATTAGTAGCAATAA+TGG | - | chr6_1:25971631-25971650 | None:intergenic | 25.0% |
| AAGAAAGAATCCATTCCATT+TGG | + | chr6_1:25968825-25968844 | Msa0879980:CDS | 30.0% | |
| CTTCTTCACCAAAAAATGAT+AGG | + | chr6_1:25969277-25969296 | Msa0879980:CDS | 30.0% | |
| AATTAAATCCTTTATGTGGC+AGG | + | chr6_1:25969542-25969561 | Msa0879980:intron | 30.0% | |
| TGGAAATCTAACATGATTAC+TGG | + | chr6_1:25969585-25969604 | Msa0879980:CDS | 30.0% | |
| GGAAATCTAACATGATTACT+GGG | + | chr6_1:25969586-25969605 | Msa0879980:CDS | 30.0% | |
| GAAATCTAACATGATTACTG+GGG | + | chr6_1:25969587-25969606 | Msa0879980:CDS | 30.0% | |
| TTAAATGCAGTTCATGTGTT+TGG | - | chr6_1:25969706-25969725 | None:intergenic | 30.0% | |
| GGACATCATAATGATTCAAA+AGG | - | chr6_1:25969987-25970006 | None:intergenic | 30.0% | |
| GATGTCCACATACTTAAAAA+AGG | + | chr6_1:25970000-25970019 | Msa0879980:intron | 30.0% | |
| !!! | AGTGACCTTTTTTAAGTATG+TGG | - | chr6_1:25970008-25970027 | None:intergenic | 30.0% |
| AAAAGTCATGTTCTAACACA+TGG | - | chr6_1:25970100-25970119 | None:intergenic | 30.0% | |
| AGAAGAATCCACAAAAATAG+GGG | - | chr6_1:25970302-25970321 | None:intergenic | 30.0% | |
| GAGAAGAATCCACAAAAATA+GGG | - | chr6_1:25970303-25970322 | None:intergenic | 30.0% | |
| AGAGAAGAATCCACAAAAAT+AGG | - | chr6_1:25970304-25970323 | None:intergenic | 30.0% | |
| ATTGACACTTCAGATTAAAC+AGG | - | chr6_1:25970435-25970454 | None:intergenic | 30.0% | |
| ACATAGATTTAGAGAAATGG+AGG | + | chr6_1:25970463-25970482 | Msa0879980:intron | 30.0% | |
| GGATAATAGCATAATAGCTT+AGG | - | chr6_1:25970503-25970522 | None:intergenic | 30.0% | |
| ACATGTTGAAAAACTAACAC+AGG | - | chr6_1:25970649-25970668 | None:intergenic | 30.0% | |
| ATGGTAACATTTCACATGAA+AGG | - | chr6_1:25970762-25970781 | None:intergenic | 30.0% | |
| AAAGTTGGATCGATAAATGA+TGG | - | chr6_1:25970781-25970800 | None:intergenic | 30.0% | |
| AAAGAAAAAGACTGTCAAAC+AGG | + | chr6_1:25970907-25970926 | Msa0879980:CDS | 30.0% | |
| ATTGCTCTTCATATTCTTTC+TGG | - | chr6_1:25971174-25971193 | None:intergenic | 30.0% | |
| TCAAAAGATAGACACTCTTA+AGG | + | chr6_1:25971195-25971214 | Msa0879980:CDS | 30.0% | |
| CGATGAAAATGATTCTATTG+AGG | + | chr6_1:25971279-25971298 | Msa0879980:CDS | 30.0% | |
| CTACTAATTTGAGTGTGATT+TGG | + | chr6_1:25971637-25971656 | Msa0879980:intron | 30.0% | |
| ! | AATAGATCTGCAATTGATTC+TGG | - | chr6_1:25971698-25971717 | None:intergenic | 30.0% |
| AAATTGTAAGGTCTGCCAAA+TGG | - | chr6_1:25968843-25968862 | None:intergenic | 35.0% | |
| CAAAGATAACCGTCACAAAT+TGG | - | chr6_1:25969054-25969073 | None:intergenic | 35.0% | |
| CAATTTGTGACGGTTATCTT+TGG | + | chr6_1:25969052-25969071 | Msa0879980:intron | 35.0% | |
| CCAGTCATTAAACTTACATC+AGG | - | chr6_1:25969231-25969250 | None:intergenic | 35.0% | |
| CCTGATGTAAGTTTAATGAC+TGG | + | chr6_1:25969228-25969247 | Msa0879980:CDS | 35.0% | |
| !!! | CATTTTTTGGTGAAGAAGAC+TGG | - | chr6_1:25969275-25969294 | None:intergenic | 35.0% |
| TCACCAAAAAATGATAGGGA+AGG | + | chr6_1:25969282-25969301 | Msa0879980:CDS | 35.0% | |
| CACCAAAAAATGATAGGGAA+GGG | + | chr6_1:25969283-25969302 | Msa0879980:CDS | 35.0% | |
| ACAGATTGTTCTTGTTCTTC+TGG | + | chr6_1:25969319-25969338 | Msa0879980:intron | 35.0% | |
| ! | TTTGTTCAGTCTTTGGGAAA+AGG | - | chr6_1:25969360-25969379 | None:intergenic | 35.0% |
| TACTGGGGATGGTAATATTA+TGG | + | chr6_1:25969602-25969621 | Msa0879980:intron | 35.0% | |
| CACATGAACTGCATTTAATG+TGG | + | chr6_1:25969708-25969727 | Msa0879980:intron | 35.0% | |
| TGTAGAAAATCCATCTAGAC+TGG | + | chr6_1:25969756-25969775 | Msa0879980:intron | 35.0% | |
| ATTATGGCTAACCATACATG+GGG | - | chr6_1:25970265-25970284 | None:intergenic | 35.0% | |
| GATTATGGCTAACCATACAT+GGG | - | chr6_1:25970266-25970285 | None:intergenic | 35.0% | |
| AGATTATGGCTAACCATACA+TGG | - | chr6_1:25970267-25970286 | None:intergenic | 35.0% | |
| !!! | TCTCAAATCCCCTATTTTTG+TGG | + | chr6_1:25970291-25970310 | Msa0879980:intron | 35.0% |
| TAGATTTAGAGAAATGGAGG+TGG | + | chr6_1:25970466-25970485 | Msa0879980:intron | 35.0% | |
| TTATATGCATAGTGTGTTGG+TGG | - | chr6_1:25970548-25970567 | None:intergenic | 35.0% | |
| ATGAAAGGCTCATATAAGAC+AGG | - | chr6_1:25970747-25970766 | None:intergenic | 35.0% | |
| CTTATTTCATCAACTTCCTG+TGG | - | chr6_1:25970882-25970901 | None:intergenic | 35.0% | |
| AAGACTGTCAAACAGGAAAT+CGG | + | chr6_1:25970914-25970933 | Msa0879980:CDS | 35.0% | |
| CAAACAAACACATCAGAAGT+TGG | - | chr6_1:25971099-25971118 | None:intergenic | 35.0% | |
| CACTCTTAAGGAAGACAATT+CGG | + | chr6_1:25971207-25971226 | Msa0879980:CDS | 35.0% | |
| ! | CTAATTTGAGTGTGATTTGG+TGG | + | chr6_1:25971640-25971659 | Msa0879980:intron | 35.0% |
| TGGCAGACCTTACAATTTCT+TGG | + | chr6_1:25968845-25968864 | Msa0879980:CDS | 40.0% | |
| ! | TGAGGCACCAAGAAATTGTA+AGG | - | chr6_1:25968855-25968874 | None:intergenic | 40.0% |
| CATGATTTACCGACATCTTG+AGG | - | chr6_1:25968873-25968892 | None:intergenic | 40.0% | |
| TGTGGTAGTATAGGTGTGTT+TGG | - | chr6_1:25968988-25969007 | None:intergenic | 40.0% | |
| ACACACCTATACTACCACAT+TGG | + | chr6_1:25968989-25969008 | Msa0879980:CDS | 40.0% | |
| CACACCTATACTACCACATT+GGG | + | chr6_1:25968990-25969009 | Msa0879980:CDS | 40.0% | |
| GTATCCCAATGTGGTAGTAT+AGG | - | chr6_1:25968997-25969016 | None:intergenic | 40.0% | |
| TGCATAGTTGTATCCCAATG+TGG | - | chr6_1:25969006-25969025 | None:intergenic | 40.0% | |
| ACATTGGGATACAACTATGC+AGG | + | chr6_1:25969005-25969024 | Msa0879980:CDS | 40.0% | |
| ACTGGCGAATCAAGAGAATA+TGG | + | chr6_1:25969246-25969265 | Msa0879980:CDS | 40.0% | |
| !!! | GTCCCTTCCCTATCATTTTT+TGG | - | chr6_1:25969288-25969307 | None:intergenic | 40.0% |
| GAACAATCTGTACCTCATTG+AGG | - | chr6_1:25969310-25969329 | None:intergenic | 40.0% | |
| TATGTGCACAGTGCAATAAG+TGG | + | chr6_1:25969386-25969405 | Msa0879980:intron | 40.0% | |
| ATTCTCCTTTAAGCACGAAG+TGG | + | chr6_1:25969565-25969584 | Msa0879980:CDS | 40.0% | |
| GATTTCCACTTCGTGCTTAA+AGG | - | chr6_1:25969573-25969592 | None:intergenic | 40.0% | |
| TCTAACATGATTACTGGGGA+TGG | + | chr6_1:25969591-25969610 | Msa0879980:CDS | 40.0% | |
| AAATTCTGTGCCAGTCTAGA+TGG | - | chr6_1:25969769-25969788 | None:intergenic | 40.0% | |
| ATCTAGACTGGCACAGAATT+TGG | + | chr6_1:25969768-25969787 | Msa0879980:CDS | 40.0% | |
| GAATTTGGAGACAGTTGTCA+AGG | + | chr6_1:25969783-25969802 | Msa0879980:CDS | 40.0% | |
| TCTGTAGTCATTGTGAGACT+TGG | + | chr6_1:25970051-25970070 | Msa0879980:intron | 40.0% | |
| ACATGGTAGTCTGGACTTAA+TGG | - | chr6_1:25970083-25970102 | None:intergenic | 40.0% | |
| TGTTCTAACACATGGTAGTC+TGG | - | chr6_1:25970092-25970111 | None:intergenic | 40.0% | |
| ! | ACATCTCATGTGGGTAGTTT+TGG | - | chr6_1:25970524-25970543 | None:intergenic | 40.0% |
| TGAGTCTTGCAAGATATGCT+TGG | + | chr6_1:25970592-25970611 | Msa0879980:intron | 40.0% | |
| !! | CAAGATATGCTTGGCTTTGT+TGG | + | chr6_1:25970601-25970620 | Msa0879980:intron | 40.0% |
| TTAGTTGCATTTCTTGCCAC+AGG | + | chr6_1:25970863-25970882 | Msa0879980:intron | 40.0% | |
| AGGTACATACGACAATGCTT+TGG | + | chr6_1:25970961-25970980 | Msa0879980:intron | 40.0% | |
| TGGCTACAAAGAGAGATCAA+AGG | - | chr6_1:25971505-25971524 | None:intergenic | 40.0% | |
| GTCATCTAACACGAAGAAAG+TGG | - | chr6_1:25971525-25971544 | None:intergenic | 40.0% | |
| !! | ATTTGAGTGTGATTTGGTGG+TGG | + | chr6_1:25971643-25971662 | Msa0879980:intron | 40.0% |
| ! | GAAGAGCTAGTTAGGTTGTA+TGG | + | chr6_1:25971671-25971690 | Msa0879980:CDS | 40.0% |
| GTAAGGTCTGCCAAATGGAA+TGG | - | chr6_1:25968838-25968857 | None:intergenic | 45.0% | |
| !! | TTCTTGGTGCCTCAAGATGT+CGG | + | chr6_1:25968861-25968880 | Msa0879980:intron | 45.0% |
| TGCTCTGCACCAATTTGTGA+CGG | + | chr6_1:25969042-25969061 | Msa0879980:intron | 45.0% | |
| TGCACAGGCTTTCTCAGAAA+TGG | + | chr6_1:25969155-25969174 | Msa0879980:CDS | 45.0% | |
| AGGAGAATCCTGCCACATAA+AGG | - | chr6_1:25969553-25969572 | None:intergenic | 45.0% | |
| TGGCTAACAGTCTTGCATCT+TGG | + | chr6_1:25969728-25969747 | Msa0879980:intron | 45.0% | |
| AGAAACGCAAGAATCATGCG+TGG | + | chr6_1:25970203-25970222 | Msa0879980:intron | 45.0% | |
| TGGAACAGGAAGAGCTAGTT+AGG | + | chr6_1:25971663-25971682 | Msa0879980:intron | 45.0% | |
| !!! | TTTATTTATTTTTTTTTTTG+TGG | + | chr6_1:25969908-25969927 | Msa0879980:intron | 5.0% |
| ! | TTTTGGTCAGGATGCTGCAC+AGG | + | chr6_1:25969140-25969159 | Msa0879980:intron | 50.0% |
| ATAGGGAAGGGACCTCAATG+AGG | + | chr6_1:25969295-25969314 | Msa0879980:CDS | 50.0% | |
| GGAAGCAAGAGATCGACAGA+TGG | + | chr6_1:25969407-25969426 | Msa0879980:CDS | 50.0% | |
| CTAACCATACATGGGGTAGG+GGG | - | chr6_1:25970258-25970277 | None:intergenic | 50.0% | |
| GCTAACCATACATGGGGTAG+GGG | - | chr6_1:25970259-25970278 | None:intergenic | 50.0% | |
| GGCTAACCATACATGGGGTA+GGG | - | chr6_1:25970260-25970279 | None:intergenic | 50.0% | |
| TGGCTAACCATACATGGGGT+AGG | - | chr6_1:25970261-25970280 | None:intergenic | 50.0% | |
| !! | GTTGGTGGCACATCTCATGT+GGG | - | chr6_1:25970533-25970552 | None:intergenic | 50.0% |
| !! | TGTTGGTGGCACATCTCATG+TGG | - | chr6_1:25970534-25970553 | None:intergenic | 50.0% |
| !! | GTGTGATTTGGTGGTGGAAC+AGG | + | chr6_1:25971649-25971668 | Msa0879980:intron | 50.0% |
| ACTGCCCCCTACCCCATGTA+TGG | + | chr6_1:25970251-25970270 | Msa0879980:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 25968816 | 25971736 | 25968816 | ID=Msa0879980;Name=Msa0879980 |
| chr6_1 | mRNA | 25968816 | 25971736 | 25968816 | ID=Msa0879980-mRNA-1;Parent=Msa0879980;Name=Msa0879980-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0|0|1|1|1|9|0|247 |
| chr6_1 | exon | 25968816 | 25968878 | 25968816 | ID=Msa0879980-mRNA-1:exon:6329;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25968976 | 25969026 | 25968976 | ID=Msa0879980-mRNA-1:exon:6330;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25969150 | 25969316 | 25969150 | ID=Msa0879980-mRNA-1:exon:6331;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25969397 | 25969451 | 25969397 | ID=Msa0879980-mRNA-1:exon:6332;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25969564 | 25969612 | 25969564 | ID=Msa0879980-mRNA-1:exon:6333;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25969761 | 25969849 | 25969761 | ID=Msa0879980-mRNA-1:exon:6334;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25970885 | 25970962 | 25970885 | ID=Msa0879980-mRNA-1:exon:6335;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25971175 | 25971300 | 25971175 | ID=Msa0879980-mRNA-1:exon:6336;Parent=Msa0879980-mRNA-1 |
| chr6_1 | exon | 25971671 | 25971736 | 25971671 | ID=Msa0879980-mRNA-1:exon:6337;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25968816 | 25968878 | 25968816 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25968976 | 25969026 | 25968976 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25969150 | 25969316 | 25969150 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25969397 | 25969451 | 25969397 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25969564 | 25969612 | 25969564 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25969761 | 25969849 | 25969761 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25970885 | 25970962 | 25970885 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25971175 | 25971300 | 25971175 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| chr6_1 | CDS | 25971671 | 25971736 | 25971671 | ID=Msa0879980-mRNA-1:cds;Parent=Msa0879980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
