AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881380 MtrunA17_Chr2g0277531 89.097 321 27 4 1 316 1 318 0.0 571
Msa0881380 MtrunA17_Chr2g0277461 72.973 370 85 8 10 369 4 368 0.0 522
Msa0881380 MtrunA17_Chr5g0424931 47.291 406 161 13 13 375 13 408 6.52e-101 308
Msa0881380 MtrunA17_Chr1g0178011 46.361 371 173 11 12 365 5 366 1.93e-96 295
Msa0881380 MtrunA17_Chr5g0417281 44.385 374 190 9 10 372 2 368 3.30e-96 296
Msa0881380 MtrunA17_Chr5g0436761 45.333 375 185 11 11 372 4 371 7.94e-87 270
Msa0881380 MtrunA17_Chr2g0289221 48.276 319 141 11 12 316 13 321 6.92e-84 259
Msa0881380 MtrunA17_Chr3g0115271 39.855 414 183 13 14 373 14 415 1.89e-82 263
Msa0881380 MtrunA17_Chr5g0424801 41.081 370 183 13 13 362 6 360 5.00e-82 255
Msa0881380 MtrunA17_Chr5g0424741 41.063 414 177 13 12 363 5 413 8.37e-81 256
Msa0881380 MtrunA17_Chr5g0425261 41.333 375 175 14 13 362 6 360 1.65e-80 251
Msa0881380 MtrunA17_Chr5g0417211 46.395 319 150 10 11 316 4 314 3.06e-79 249
Msa0881380 MtrunA17_Chr2g0326761 35.500 400 187 14 16 355 8 396 2.17e-64 217
Msa0881380 MtrunA17_Chr1g0181211 34.367 387 183 11 16 339 24 402 1.01e-61 210
Msa0881380 MtrunA17_Chr4g0028971 34.783 414 191 15 9 355 2 403 2.40e-61 209
Msa0881380 MtrunA17_Chr1g0199681 34.586 399 191 13 19 358 94 481 3.31e-58 201
Msa0881380 MtrunA17_Chr5g0419861 80.556 108 19 1 64 169 16 123 8.15e-55 176
Msa0881380 MtrunA17_Chr7g0264171 31.796 412 203 15 16 358 28 430 3.45e-51 180
Msa0881380 MtrunA17_Chr7g0264161 36.246 309 167 11 29 316 2 301 3.56e-48 165
Msa0881380 MtrunA17_Chr5g0425661 45.729 199 97 4 19 213 37 228 3.78e-48 163
Msa0881380 MtrunA17_Chr4g0070181 32.378 349 199 12 16 338 20 357 1.06e-41 156
Msa0881380 MtrunA17_Chr4g0009751 31.148 366 209 13 19 361 19 364 2.22e-40 150
Msa0881380 MtrunA17_Chr2g0276781 30.854 363 220 12 16 355 20 374 4.29e-40 150
Msa0881380 MtrunA17_Chr2g0282961 28.647 377 223 12 19 363 53 415 4.55e-39 147
Msa0881380 MtrunA17_Chr1g0156321 30.435 345 208 10 16 336 40 376 4.94e-39 148
Msa0881380 MtrunA17_Chr2g0285461 30.199 351 222 8 19 349 23 370 8.21e-39 147
Msa0881380 MtrunA17_Chr2g0301251 31.503 346 206 11 16 338 20 357 1.21e-38 147
Msa0881380 MtrunA17_Chr8g0385791 31.594 345 197 13 19 336 59 391 1.43e-38 147
Msa0881380 MtrunA17_Chr8g0376771 30.769 351 219 9 19 349 23 369 2.01e-38 146
Msa0881380 MtrunA17_Chr8g0389081 30.857 350 207 11 16 339 29 369 3.50e-38 145
Msa0881380 MtrunA17_Chr5g0433301 28.691 359 231 9 2 339 7 361 6.89e-38 145
Msa0881380 MtrunA17_Chr3g0109391 29.143 350 213 10 16 339 23 363 5.06e-37 142
Msa0881380 MtrunA17_Chr8g0346711 28.767 365 222 11 16 360 26 372 1.26e-35 137
Msa0881380 MtrunA17_Chr7g0239061 30.725 345 204 12 16 336 11 344 8.17e-35 135
Msa0881380 MtrunA17_Chr4g0046371 29.268 410 223 16 14 375 33 423 9.24e-35 135
Msa0881380 MtrunA17_Chr2g0326281 31.347 386 208 15 19 356 56 432 1.20e-34 135
Msa0881380 MtrunA17_Chr4g0029671 30.199 351 204 13 19 336 54 396 2.30e-30 122
Msa0881380 MtrunA17_Chr5g0424791 43.151 146 75 3 73 218 14 151 1.81e-24 97.8
Msa0881380 MtrunA17_Chr5g0425651 48.361 122 52 5 238 349 1 121 1.93e-24 97.1
Msa0881380 MtrunA17_Chr8g0356211 25.893 224 136 8 135 336 5 220 2.20e-14 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881380 AT1G77850.2 36.203 395 191 11 15 358 15 399 2.17e-70 231
Msa0881380 AT1G77850.1 36.203 395 191 11 15 358 15 399 2.30e-70 231
Msa0881380 AT4G30080.1 35.263 380 181 10 16 339 16 386 1.81e-61 209
Msa0881380 AT2G28350.2 33.735 415 196 15 11 358 2 404 1.48e-57 199
Msa0881380 AT2G28350.1 33.735 415 196 15 11 358 2 404 2.05e-57 199
Msa0881380 AT4G23980.2 31.378 341 209 9 15 336 8 342 1.07e-44 163
Msa0881380 AT4G23980.1 31.378 341 209 9 15 336 8 342 1.45e-44 163
Msa0881380 AT1G34390.1 32.153 367 210 13 14 357 22 372 2.96e-43 159
Msa0881380 AT1G35540.1 32.514 366 212 13 14 357 22 374 4.41e-43 158
Msa0881380 AT1G34310.1 32.362 343 200 11 14 336 22 352 1.09e-42 157
Msa0881380 AT1G35520.1 32.065 368 211 13 14 357 22 374 1.30e-42 157
Msa0881380 AT2G33860.1 32.277 347 194 11 19 336 54 388 5.41e-42 155
Msa0881380 AT1G35240.1 30.959 365 219 12 14 357 22 374 5.48e-41 152
Msa0881380 AT2G46530.1 29.333 375 236 10 15 370 17 381 2.50e-40 150
Msa0881380 AT2G46530.3 29.333 375 236 10 15 370 38 402 2.80e-40 150
Msa0881380 AT5G20730.3 31.429 350 204 11 15 338 20 359 3.54e-39 149
Msa0881380 AT5G20730.1 31.429 350 204 11 15 338 20 359 3.87e-39 149
Msa0881380 AT5G37020.2 29.363 361 224 11 2 339 7 359 4.06e-39 148
Msa0881380 AT5G37020.1 29.363 361 224 11 2 339 7 359 5.64e-39 148
Msa0881380 AT1G34410.1 30.685 365 220 12 14 357 22 374 7.07e-39 147
Msa0881380 AT1G19850.1 30.685 365 211 11 1 336 37 388 8.48e-39 148
Msa0881380 AT1G19850.2 30.685 365 211 11 1 336 26 377 9.49e-39 147
Msa0881380 AT5G20730.2 31.429 350 203 12 15 338 20 358 1.47e-38 147
Msa0881380 AT3G61830.1 30.725 345 205 12 15 336 21 354 5.62e-38 144
Msa0881380 AT5G62000.4 30.423 378 222 15 16 364 58 423 1.15e-37 144
Msa0881380 AT5G62000.2 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0881380 AT5G62000.5 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0881380 AT5G62000.3 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0881380 AT5G62000.1 30.423 378 222 15 16 364 58 423 1.33e-37 144
Msa0881380 AT1G30330.1 30.641 359 216 10 16 349 20 370 1.35e-37 144
Msa0881380 AT1G30330.3 30.641 359 216 10 16 349 22 372 1.42e-37 144
Msa0881380 AT1G30330.2 30.641 359 216 10 16 349 22 372 1.42e-37 144
Msa0881380 AT1G19220.1 30.659 349 205 12 16 338 20 357 3.46e-37 143
Msa0881380 AT5G60450.2 29.380 371 224 12 14 353 36 399 1.51e-35 138
Msa0881380 AT1G59750.4 28.689 366 218 12 19 355 22 373 2.06e-35 137
Msa0881380 AT1G59750.2 28.689 366 218 12 19 355 22 373 2.10e-35 137
Msa0881380 AT1G59750.1 28.689 366 218 12 19 355 22 373 2.49e-35 137
Msa0881380 AT1G59750.3 28.689 366 218 12 19 355 22 373 2.49e-35 137
Msa0881380 AT5G60450.1 29.268 369 223 12 16 353 62 423 4.17e-35 137
Msa0881380 AT1G34170.1 29.769 346 207 13 14 336 20 352 1.68e-34 133
Msa0881380 AT1G34170.2 29.762 336 194 13 14 336 20 326 1.61e-32 127
Msa0881380 AT1G34170.3 29.882 338 191 13 14 336 20 326 3.22e-32 127
Msa0881380 AT3G61830.2 30.314 287 174 9 69 336 24 303 2.11e-27 114
Msa0881380 AT1G43950.1 32.258 217 122 7 14 221 22 222 6.78e-27 107
Msa0881380 AT2G33860.2 32.479 234 132 8 125 336 2 231 1.04e-26 110
Msa0881380 AT5G37020.3 30.508 236 141 8 125 339 31 264 2.58e-24 105
Msa0881380 AT2G46530.2 30.112 269 162 9 121 370 33 294 1.15e-22 99.8
Msa0881380 ATMG00940.1 38.843 121 63 6 210 327 44 156 9.09e-13 66.2

Find 100 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATGCAACTTTGGTATT+TGG 0.133681 6_1:-28454230 None:intergenic
TCTCAATATCATAGGTTAAC+TGG 0.218607 6_1:+28456110 Msa0881380:intron
TTCATCTTAACTCTCATTCT+AGG 0.234993 6_1:-28454984 None:intergenic
TATCTCGTACGTCTAATTTA+TGG 0.240815 6_1:+28455054 Msa0881380:CDS
CACCATGGGCTGACTCTTCT+TGG 0.263929 6_1:-28456157 None:intergenic
CTCATCATCGTCGTTGCAAT+TGG 0.314881 6_1:-28454481 None:intergenic
GTAGAGATTGTCCCTTGATA+TGG 0.324016 6_1:-28455029 None:intergenic
AACGACGATGATGAGGTAAT+TGG 0.328138 6_1:+28454489 Msa0881380:CDS
GCTGCTGTTGGTGCTGGTGC+TGG 0.335243 6_1:-28454155 None:intergenic
GTATGCTTGCTTACATTAGT+AGG 0.336336 6_1:-28454534 None:intergenic
GCATCAACATCATTGGTTAT+TGG 0.339316 6_1:-28454432 None:intergenic
TTAACAAACGAACTCCATTC+AGG 0.339363 6_1:-28454708 None:intergenic
CGCATGTCCACCCTCAAATC+TGG 0.363208 6_1:+28454184 Msa0881380:CDS
CAACGGGAAAATTATTTGTT+GGG 0.375166 6_1:+28454778 Msa0881380:CDS
ATGGTTGCTGCTGTTGGTGC+TGG 0.385990 6_1:-28454161 None:intergenic
CAAATCTGGCAGACATTAAC+CGG 0.388348 6_1:+28454198 Msa0881380:CDS
TAAACTCTTGAATGCAACTT+TGG 0.402834 6_1:-28454237 None:intergenic
TCAACGGGAAAATTATTTGT+TGG 0.404341 6_1:+28454777 Msa0881380:CDS
CTGACGTTCATGGTGAAGTC+TGG 0.406535 6_1:+28454634 Msa0881380:CDS
CTCCTCGTCACTGACGTTCA+TGG 0.407231 6_1:+28454624 Msa0881380:CDS
AATGGAGTTCGTTTGTTAAG+AGG 0.407313 6_1:+28454712 Msa0881380:CDS
AGGAATCCCCTTATATGATA+AGG 0.414977 6_1:+28456278 Msa0881380:CDS
TAATTTATGGCGCATGCTAC+AGG 0.422222 6_1:+28455067 Msa0881380:CDS
ATTTCCCTCAAACGTGCATC+AGG 0.435910 6_1:+28456190 Msa0881380:CDS
TGAGTTGGAGAAGGCAGTAA+TGG 0.441158 6_1:+28454836 Msa0881380:CDS
ACTATCCTCGAGGTGATGAT+TGG 0.444363 6_1:+28454904 Msa0881380:CDS
GACACAGGCATCAACATCAT+TGG 0.444932 6_1:-28454439 None:intergenic
GTTAATGTCTGCCAGATTTG+AGG 0.445255 6_1:-28454195 None:intergenic
TCATCTTAACTCTCATTCTA+GGG 0.445548 6_1:-28454983 None:intergenic
GATATAAAACACGTTTCTCT+TGG 0.446560 6_1:-28454685 None:intergenic
TGCCCCATTAAGTGATGAAA+AGG 0.448788 6_1:+28456258 Msa0881380:CDS
AGGTAATTGGTTCGTTTACA+AGG 0.453827 6_1:+28454502 Msa0881380:CDS
TGAAGACTGATAAATCTTCA+AGG 0.454632 6_1:+28455003 Msa0881380:CDS
TGGGAACCTCATGAGGGTCT+TGG 0.457592 6_1:-28454461 None:intergenic
AATTATTTGTTGGGATTCGC+AGG 0.462606 6_1:+28454787 Msa0881380:CDS
GTCGACCTGATGCACGTTTG+AGG 0.464249 6_1:-28456195 None:intergenic
GGATAGTAAACAATTTCAAA+TGG 0.472676 6_1:-28454888 None:intergenic
AGTAATGGAGGCAGTGAAGT+TGG 0.472794 6_1:+28454851 Msa0881380:CDS
TTAATGTCTGCCAGATTTGA+GGG 0.479203 6_1:-28454194 None:intergenic
ATGAATCAATGAAAATTCAA+TGG 0.482116 6_1:+28454958 Msa0881380:CDS
GGAGTGAATGTAAGCATTGG+AGG 0.486006 6_1:-28454301 None:intergenic
TCTCTTGGCAAACCCGTGGC+AGG 0.490609 6_1:-28454670 None:intergenic
TCATCATCGTCGTTGCAATT+GGG 0.492508 6_1:-28454480 None:intergenic
GAAAATATCTTCCCTCCGCT+TGG 0.492876 6_1:+28454582 Msa0881380:CDS
TAGAGATTGTCCCTTGATAT+GGG 0.494859 6_1:-28455028 None:intergenic
CTCAATATCATAGGTTAACT+GGG 0.496428 6_1:+28456111 Msa0881380:intron
CTCATGAGGGTCTTGGACAC+AGG 0.498403 6_1:-28454454 None:intergenic
TATGCTTGCTTACATTAGTA+GGG 0.498565 6_1:-28454533 None:intergenic
TGGTATTTGGACAGCAGTGC+CGG 0.499421 6_1:-28454217 None:intergenic
TGGCAAACCCGTGGCAGGCA+TGG 0.500790 6_1:-28454665 None:intergenic
AAGTTTCACCATGCCTGCCA+CGG 0.506565 6_1:+28454657 Msa0881380:CDS
TCGACCTGATGCACGTTTGA+GGG 0.510461 6_1:-28456194 None:intergenic
TAACAAACGAACTCCATTCA+GGG 0.512751 6_1:-28454707 None:intergenic
TCTTCAAGGATCCCATATCA+AGG 0.512818 6_1:+28455017 Msa0881380:CDS
ATGTAAGCATTGGAGGAGGA+AGG 0.516472 6_1:-28454294 None:intergenic
AGTTTCACCATGCCTGCCAC+GGG 0.517459 6_1:+28454658 Msa0881380:CDS
CATGCGATGGTTGCTGCTGT+TGG 0.533873 6_1:-28454167 None:intergenic
TTGCAATTGGGAACCTCATG+AGG 0.534875 6_1:-28454468 None:intergenic
GGAGGCAGTGAAGTTGGCAG+AGG 0.547497 6_1:+28454857 Msa0881380:CDS
TATCTTCCCTCCGCTTGGCA+TGG 0.558368 6_1:+28454587 Msa0881380:CDS
CGCCGATCCTCACACTGATG+AGG 0.560935 6_1:+28454386 Msa0881380:CDS
AAGGGAGTGAATGTAAGCAT+TGG 0.561164 6_1:-28454304 None:intergenic
CTGGTGCTGGTTGAGAGACA+TGG 0.567756 6_1:-28454142 None:intergenic
GCATATTCTAAGTGGCCTTG+TGG 0.574209 6_1:-28454267 None:intergenic
GTGAATGTAAGCATTGGAGG+AGG 0.588009 6_1:-28454298 None:intergenic
GTTGGAGAAGGCAGTAATGG+AGG 0.592416 6_1:+28454839 Msa0881380:CDS
TGGGATTCGCAGGAAAGCCG+CGG 0.593939 6_1:+28454797 Msa0881380:CDS
GGAGCAAAAGAAAGATGAGT+TGG 0.594103 6_1:+28454821 Msa0881380:CDS
GACCTCATCAGTGTGAGGAT+CGG 0.595759 6_1:-28454388 None:intergenic
GAAATAAGTTCAACCCACCA+TGG 0.601634 6_1:-28456172 None:intergenic
AAAGAAAGATGAGTTGGAGA+AGG 0.605720 6_1:+28454827 Msa0881380:CDS
AAATCTCCATGCCAAGCGGA+GGG 0.609417 6_1:-28454593 None:intergenic
CTTCAAGGATCCCATATCAA+GGG 0.609531 6_1:+28455018 Msa0881380:CDS
GAGATGATACAGATAGTGAA+AGG 0.609814 6_1:-28454348 None:intergenic
AAATAAGTTCAACCCACCAT+GGG 0.611317 6_1:-28456171 None:intergenic
GAAATCTCCATGCCAAGCGG+AGG 0.617181 6_1:-28454594 None:intergenic
AAGAAGAGTCAGCCCATGGT+GGG 0.617483 6_1:+28456159 Msa0881380:CDS
CACCATGAACGTCAGTGACG+AGG 0.617900 6_1:-28454626 None:intergenic
CGTTTCTCTTGGCAAACCCG+TGG 0.618791 6_1:-28454674 None:intergenic
AAAACGTTGAAGATCATGAA+GGG 0.620045 6_1:-28454322 None:intergenic
CACTATCTGTATCATCTCCG+CGG 0.622122 6_1:+28454353 Msa0881380:CDS
AAGGAGAAGCATATTCTAAG+TGG 0.626940 6_1:-28454275 None:intergenic
GAAAACGTTGAAGATCATGA+AGG 0.628457 6_1:-28454323 None:intergenic
CAATTGCAACGACGATGATG+AGG 0.630770 6_1:+28454482 Msa0881380:CDS
GAAATTGTTTACTATCCTCG+AGG 0.641156 6_1:+28454894 Msa0881380:CDS
TGCAATTGGGAACCTCATGA+GGG 0.643730 6_1:-28454467 None:intergenic
ATTTGAGGGTGGACATGCGA+TGG 0.643879 6_1:-28454180 None:intergenic
TTCCAAGAAGAGTCAGCCCA+TGG 0.644012 6_1:+28456155 Msa0881380:CDS
ATGCTTGCTTACATTAGTAG+GGG 0.652528 6_1:-28454532 None:intergenic
CAAGAAGAGTCAGCCCATGG+TGG 0.652994 6_1:+28456158 Msa0881380:CDS
CATGAACGTCAGTGACGAGG+AGG 0.677277 6_1:-28454623 None:intergenic
GCGAAGACCTCATCAGTGTG+AGG 0.682334 6_1:-28454393 None:intergenic
ATGTCTGCCAGATTTGAGGG+TGG 0.682807 6_1:-28454191 None:intergenic
ATCGGCGAGGAGATCAACCG+CGG 0.684227 6_1:-28454370 None:intergenic
TGAGAAATCTCCATGCCAAG+CGG 0.686661 6_1:-28454597 None:intergenic
CTGTGTCCAAGACCCTCATG+AGG 0.688345 6_1:+28454455 Msa0881380:CDS
GATTCGCAGGAAAGCCGCGG+CGG 0.692782 6_1:+28454800 Msa0881380:CDS
TCATGCCAATCATCACCTCG+AGG 0.713899 6_1:-28454909 None:intergenic
AAGAGGAAGAAACTCGACGT+CGG 0.718798 6_1:+28454729 Msa0881380:CDS
CATCAGTGTGAGGATCGGCG+AGG 0.752555 6_1:-28454383 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCTTTTTTTTTTTTTTT+TGG + chr6_1:28455097-28455116 Msa0881380:intron 10.0%
!!! AAAAATGATTTTTTTTTGAA+AGG - chr6_1:28455672-28455691 None:intergenic 10.0%
!!! TCTTCTTTTTTTTTTTTTTT+TGG + chr6_1:28455097-28455116 Msa0881380:intron 10.0%
!!! AAAAATGATTTTTTTTTGAA+AGG - chr6_1:28455672-28455691 None:intergenic 10.0%
!!! AATAATTTTAGAATTACTGT+GGG - chr6_1:28455318-28455337 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACTG+TGG - chr6_1:28455319-28455338 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr6_1:28455492-28455511 Msa0881380:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr6_1:28456102-28456121 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr6_1:28456103-28456122 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr6_1:28456102-28456121 Msa0881380:intron 15.0%
!!! AATAATTTTAGAATTACTGT+GGG - chr6_1:28455318-28455337 None:intergenic 15.0%
!!! TAATAATTTTAGAATTACTG+TGG - chr6_1:28455319-28455338 None:intergenic 15.0%
!! ATTATAGTTAAAGTTTATAG+TGG + chr6_1:28455492-28455511 Msa0881380:intron 15.0%
!! ATGATATTGAGATAAAAAAA+GGG - chr6_1:28456102-28456121 None:intergenic 15.0%
!! TATGATATTGAGATAAAAAA+AGG - chr6_1:28456103-28456122 None:intergenic 15.0%
!!! TTTTTTTATCTCAATATCAT+AGG + chr6_1:28456102-28456121 Msa0881380:intron 15.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr6_1:28454958-28454977 Msa0881380:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr6_1:28455221-28455240 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr6_1:28455361-28455380 Msa0881380:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr6_1:28455362-28455381 Msa0881380:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr6_1:28455522-28455541 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr6_1:28455989-28456008 Msa0881380:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr6_1:28456030-28456049 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr6_1:28456288-28456307 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr6_1:28456289-28456308 None:intergenic 20.0%
!! ATGAATCAATGAAAATTCAA+TGG + chr6_1:28454958-28454977 Msa0881380:CDS 20.0%
!! CTAATATTTATGAAGCAATT+AGG - chr6_1:28455221-28455240 None:intergenic 20.0%
!!! TGTCGATTAATTTAGTATTT+TGG + chr6_1:28455361-28455380 Msa0881380:intron 20.0%
!!! GTCGATTAATTTAGTATTTT+GGG + chr6_1:28455362-28455381 Msa0881380:intron 20.0%
!! TAACTACATAGATTAAAACT+TGG - chr6_1:28455522-28455541 None:intergenic 20.0%
!!! AAATACTTTTAATGCAATGT+AGG + chr6_1:28455989-28456008 Msa0881380:intron 20.0%
!!! TTCTTATCGATTAAAAGTAT+TGG - chr6_1:28456030-28456049 None:intergenic 20.0%
!! ACAAAAACCTTATCATATAA+GGG - chr6_1:28456288-28456307 None:intergenic 20.0%
!! TACAAAAACCTTATCATATA+AGG - chr6_1:28456289-28456308 None:intergenic 20.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr6_1:28454761-28454780 Msa0881380:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr6_1:28454891-28454910 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr6_1:28455165-28455184 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr6_1:28455193-28455212 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr6_1:28455442-28455461 Msa0881380:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr6_1:28456225-28456244 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr6_1:28456226-28456245 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr6_1:28456227-28456246 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr6_1:28456264-28456283 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr6_1:28456287-28456306 None:intergenic 25.0%
!! TGTTTTCATGAAAAACTCAA+CGG + chr6_1:28454761-28454780 Msa0881380:CDS 25.0%
! GGATAGTAAACAATTTCAAA+TGG - chr6_1:28454891-28454910 None:intergenic 25.0%
!! TATGAAGTGTCATCTAATTA+TGG - chr6_1:28455165-28455184 None:intergenic 25.0%
! TCATTGTGAAGCAAAATAAA+CGG - chr6_1:28455193-28455212 None:intergenic 25.0%
!! GAACAAAGAGTAGTATTTTA+AGG + chr6_1:28455442-28455461 Msa0881380:intron 25.0%
!!! TTCTAAGTTTTTTAGTTGAG+GGG - chr6_1:28456225-28456244 None:intergenic 25.0%
!!! GTTCTAAGTTTTTTAGTTGA+GGG - chr6_1:28456226-28456245 None:intergenic 25.0%
!!! AGTTCTAAGTTTTTTAGTTG+AGG - chr6_1:28456227-28456246 None:intergenic 25.0%
!! ATTCCTTTTCATCACTTAAT+GGG - chr6_1:28456264-28456283 None:intergenic 25.0%
! CAAAAACCTTATCATATAAG+GGG - chr6_1:28456287-28456306 None:intergenic 25.0%
TTGAATGCAACTTTGGTATT+TGG - chr6_1:28454233-28454252 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr6_1:28454240-28454259 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr6_1:28454252-28454271 Msa0881380:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr6_1:28454325-28454344 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr6_1:28454536-28454555 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr6_1:28454550-28454569 Msa0881380:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr6_1:28454688-28454707 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr6_1:28454762-28454781 Msa0881380:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr6_1:28454777-28454796 Msa0881380:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr6_1:28454778-28454797 Msa0881380:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr6_1:28454986-28455005 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr6_1:28454987-28455006 None:intergenic 30.0%
TGAAGACTGATAAATCTTCA+AGG + chr6_1:28455003-28455022 Msa0881380:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr6_1:28455054-28455073 Msa0881380:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr6_1:28455192-28455211 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr6_1:28455334-28455353 Msa0881380:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr6_1:28455777-28455796 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr6_1:28455778-28455797 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr6_1:28455845-28455864 Msa0881380:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr6_1:28455846-28455865 Msa0881380:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr6_1:28456110-28456129 Msa0881380:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr6_1:28456111-28456130 Msa0881380:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr6_1:28456263-28456282 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr6_1:28456265-28456284 None:intergenic 30.0%
TTGAATGCAACTTTGGTATT+TGG - chr6_1:28454233-28454252 None:intergenic 30.0%
TAAACTCTTGAATGCAACTT+TGG - chr6_1:28454240-28454259 None:intergenic 30.0%
! AGAGTTTACTATTTTCCACA+AGG + chr6_1:28454252-28454271 Msa0881380:CDS 30.0%
AAAACGTTGAAGATCATGAA+GGG - chr6_1:28454325-28454344 None:intergenic 30.0%
TATGCTTGCTTACATTAGTA+GGG - chr6_1:28454536-28454555 None:intergenic 30.0%
! AGCATACATTTTACATACCT+CGG + chr6_1:28454550-28454569 Msa0881380:CDS 30.0%
GATATAAAACACGTTTCTCT+TGG - chr6_1:28454688-28454707 None:intergenic 30.0%
! GTTTTCATGAAAAACTCAAC+GGG + chr6_1:28454762-28454781 Msa0881380:CDS 30.0%
TCAACGGGAAAATTATTTGT+TGG + chr6_1:28454777-28454796 Msa0881380:CDS 30.0%
CAACGGGAAAATTATTTGTT+GGG + chr6_1:28454778-28454797 Msa0881380:CDS 30.0%
TCATCTTAACTCTCATTCTA+GGG - chr6_1:28454986-28455005 None:intergenic 30.0%
TTCATCTTAACTCTCATTCT+AGG - chr6_1:28454987-28455006 None:intergenic 30.0%
TGAAGACTGATAAATCTTCA+AGG + chr6_1:28455003-28455022 Msa0881380:CDS 30.0%
TATCTCGTACGTCTAATTTA+TGG + chr6_1:28455054-28455073 Msa0881380:CDS 30.0%
CATTGTGAAGCAAAATAAAC+GGG - chr6_1:28455192-28455211 None:intergenic 30.0%
TATTAGAGCAAGTATGTTAC+TGG + chr6_1:28455334-28455353 Msa0881380:intron 30.0%
ATGCACTATTGTTCAAATGA+GGG - chr6_1:28455777-28455796 None:intergenic 30.0%
AATGCACTATTGTTCAAATG+AGG - chr6_1:28455778-28455797 None:intergenic 30.0%
TGTAATATCTCATGTATGTG+TGG + chr6_1:28455845-28455864 Msa0881380:intron 30.0%
GTAATATCTCATGTATGTGT+GGG + chr6_1:28455846-28455865 Msa0881380:intron 30.0%
TCTCAATATCATAGGTTAAC+TGG + chr6_1:28456110-28456129 Msa0881380:intron 30.0%
CTCAATATCATAGGTTAACT+GGG + chr6_1:28456111-28456130 Msa0881380:intron 30.0%
! TTCCTTTTCATCACTTAATG+GGG - chr6_1:28456263-28456282 None:intergenic 30.0%
! GATTCCTTTTCATCACTTAA+TGG - chr6_1:28456265-28456284 None:intergenic 30.0%
TTAATGTCTGCCAGATTTGA+GGG - chr6_1:28454197-28454216 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr6_1:28454278-28454297 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr6_1:28454326-28454345 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr6_1:28454351-28454370 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr6_1:28454435-28454454 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr6_1:28454502-28454521 Msa0881380:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr6_1:28454535-28454554 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr6_1:28454537-28454556 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr6_1:28454570-28454589 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr6_1:28454694-28454713 Msa0881380:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr6_1:28454710-28454729 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr6_1:28454711-28454730 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr6_1:28454712-28454731 Msa0881380:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr6_1:28454787-28454806 Msa0881380:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr6_1:28454827-28454846 Msa0881380:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr6_1:28454894-28454913 Msa0881380:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr6_1:28454920-28454939 Msa0881380:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr6_1:28455031-28455050 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr6_1:28455286-28455305 Msa0881380:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr6_1:28455786-28455805 Msa0881380:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr6_1:28455792-28455811 Msa0881380:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr6_1:28456174-28456193 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr6_1:28456220-28456239 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr6_1:28456278-28456297 Msa0881380:CDS 35.0%
TTAATGTCTGCCAGATTTGA+GGG - chr6_1:28454197-28454216 None:intergenic 35.0%
! AAGGAGAAGCATATTCTAAG+TGG - chr6_1:28454278-28454297 None:intergenic 35.0%
GAAAACGTTGAAGATCATGA+AGG - chr6_1:28454326-28454345 None:intergenic 35.0%
GAGATGATACAGATAGTGAA+AGG - chr6_1:28454351-28454370 None:intergenic 35.0%
! GCATCAACATCATTGGTTAT+TGG - chr6_1:28454435-28454454 None:intergenic 35.0%
!! AGGTAATTGGTTCGTTTACA+AGG + chr6_1:28454502-28454521 Msa0881380:CDS 35.0%
ATGCTTGCTTACATTAGTAG+GGG - chr6_1:28454535-28454554 None:intergenic 35.0%
GTATGCTTGCTTACATTAGT+AGG - chr6_1:28454537-28454556 None:intergenic 35.0%
! ATATTTTCAGCACAAAACCG+AGG - chr6_1:28454570-28454589 None:intergenic 35.0%
! ACGTGTTTTATATCCCTGAA+TGG + chr6_1:28454694-28454713 Msa0881380:CDS 35.0%
TAACAAACGAACTCCATTCA+GGG - chr6_1:28454710-28454729 None:intergenic 35.0%
TTAACAAACGAACTCCATTC+AGG - chr6_1:28454711-28454730 None:intergenic 35.0%
! AATGGAGTTCGTTTGTTAAG+AGG + chr6_1:28454712-28454731 Msa0881380:CDS 35.0%
! AATTATTTGTTGGGATTCGC+AGG + chr6_1:28454787-28454806 Msa0881380:CDS 35.0%
! AAAGAAAGATGAGTTGGAGA+AGG + chr6_1:28454827-28454846 Msa0881380:CDS 35.0%
GAAATTGTTTACTATCCTCG+AGG + chr6_1:28454894-28454913 Msa0881380:CDS 35.0%
! TGATTGGCATGATTTTGTAG+TGG + chr6_1:28454920-28454939 Msa0881380:CDS 35.0%
TAGAGATTGTCCCTTGATAT+GGG - chr6_1:28455031-28455050 None:intergenic 35.0%
TATATTACTTTGTCCCCTAC+AGG + chr6_1:28455286-28455305 Msa0881380:intron 35.0%
CAATAGTGCATTGCAGTTAT+TGG + chr6_1:28455786-28455805 Msa0881380:intron 35.0%
!!! TGCATTGCAGTTATTGGTTT+TGG + chr6_1:28455792-28455811 Msa0881380:intron 35.0%
AAATAAGTTCAACCCACCAT+GGG - chr6_1:28456174-28456193 None:intergenic 35.0%
!!! AGTTTTTTAGTTGAGGGGAA+TGG - chr6_1:28456220-28456239 None:intergenic 35.0%
AGGAATCCCCTTATATGATA+AGG + chr6_1:28456278-28456297 Msa0881380:CDS 35.0%
GTTAATGTCTGCCAGATTTG+AGG - chr6_1:28454198-28454217 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr6_1:28454198-28454217 Msa0881380:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr6_1:28454307-28454326 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr6_1:28454483-28454502 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr6_1:28454489-28454508 Msa0881380:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr6_1:28454821-28454840 Msa0881380:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr6_1:28455017-28455036 Msa0881380:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr6_1:28455018-28455037 Msa0881380:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr6_1:28455032-28455051 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr6_1:28455067-28455086 Msa0881380:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr6_1:28455849-28455868 Msa0881380:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr6_1:28456175-28456194 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr6_1:28456258-28456277 Msa0881380:CDS 40.0%
GTTAATGTCTGCCAGATTTG+AGG - chr6_1:28454198-28454217 None:intergenic 40.0%
CAAATCTGGCAGACATTAAC+CGG + chr6_1:28454198-28454217 Msa0881380:CDS 40.0%
AAGGGAGTGAATGTAAGCAT+TGG - chr6_1:28454307-28454326 None:intergenic 40.0%
TCATCATCGTCGTTGCAATT+GGG - chr6_1:28454483-28454502 None:intergenic 40.0%
AACGACGATGATGAGGTAAT+TGG + chr6_1:28454489-28454508 Msa0881380:CDS 40.0%
GGAGCAAAAGAAAGATGAGT+TGG + chr6_1:28454821-28454840 Msa0881380:CDS 40.0%
TCTTCAAGGATCCCATATCA+AGG + chr6_1:28455017-28455036 Msa0881380:CDS 40.0%
CTTCAAGGATCCCATATCAA+GGG + chr6_1:28455018-28455037 Msa0881380:CDS 40.0%
GTAGAGATTGTCCCTTGATA+TGG - chr6_1:28455032-28455051 None:intergenic 40.0%
TAATTTATGGCGCATGCTAC+AGG + chr6_1:28455067-28455086 Msa0881380:CDS 40.0%
ATATCTCATGTATGTGTGGG+TGG + chr6_1:28455849-28455868 Msa0881380:intron 40.0%
GAAATAAGTTCAACCCACCA+TGG - chr6_1:28456175-28456194 None:intergenic 40.0%
TGCCCCATTAAGTGATGAAA+AGG + chr6_1:28456258-28456277 Msa0881380:CDS 40.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr6_1:28454270-28454289 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr6_1:28454297-28454316 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr6_1:28454301-28454320 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr6_1:28454304-28454323 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr6_1:28454353-28454372 Msa0881380:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr6_1:28454442-28454461 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr6_1:28454470-28454489 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr6_1:28454471-28454490 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr6_1:28454484-28454503 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr6_1:28454482-28454501 Msa0881380:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr6_1:28454582-28454601 Msa0881380:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr6_1:28454600-28454619 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr6_1:28454729-28454748 Msa0881380:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr6_1:28454836-28454855 Msa0881380:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr6_1:28454851-28454870 Msa0881380:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr6_1:28454904-28454923 Msa0881380:CDS 45.0%
ACTGTGGGACTTATCCTGTA+GGG - chr6_1:28455303-28455322 None:intergenic 45.0%
TACTGTGGGACTTATCCTGT+AGG - chr6_1:28455304-28455323 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr6_1:28456190-28456209 Msa0881380:CDS 45.0%
! GCATATTCTAAGTGGCCTTG+TGG - chr6_1:28454270-28454289 None:intergenic 45.0%
!! ATGTAAGCATTGGAGGAGGA+AGG - chr6_1:28454297-28454316 None:intergenic 45.0%
!! GTGAATGTAAGCATTGGAGG+AGG - chr6_1:28454301-28454320 None:intergenic 45.0%
!! GGAGTGAATGTAAGCATTGG+AGG - chr6_1:28454304-28454323 None:intergenic 45.0%
CACTATCTGTATCATCTCCG+CGG + chr6_1:28454353-28454372 Msa0881380:CDS 45.0%
GACACAGGCATCAACATCAT+TGG - chr6_1:28454442-28454461 None:intergenic 45.0%
TGCAATTGGGAACCTCATGA+GGG - chr6_1:28454470-28454489 None:intergenic 45.0%
TTGCAATTGGGAACCTCATG+AGG - chr6_1:28454471-28454490 None:intergenic 45.0%
CTCATCATCGTCGTTGCAAT+TGG - chr6_1:28454484-28454503 None:intergenic 45.0%
CAATTGCAACGACGATGATG+AGG + chr6_1:28454482-28454501 Msa0881380:CDS 45.0%
GAAAATATCTTCCCTCCGCT+TGG + chr6_1:28454582-28454601 Msa0881380:CDS 45.0%
TGAGAAATCTCCATGCCAAG+CGG - chr6_1:28454600-28454619 None:intergenic 45.0%
AAGAGGAAGAAACTCGACGT+CGG + chr6_1:28454729-28454748 Msa0881380:CDS 45.0%
! TGAGTTGGAGAAGGCAGTAA+TGG + chr6_1:28454836-28454855 Msa0881380:CDS 45.0%
! AGTAATGGAGGCAGTGAAGT+TGG + chr6_1:28454851-28454870 Msa0881380:CDS 45.0%
ACTATCCTCGAGGTGATGAT+TGG + chr6_1:28454904-28454923 Msa0881380:CDS 45.0%
ACTGTGGGACTTATCCTGTA+GGG - chr6_1:28455303-28455322 None:intergenic 45.0%
TACTGTGGGACTTATCCTGT+AGG - chr6_1:28455304-28455323 None:intergenic 45.0%
ATTTCCCTCAAACGTGCATC+AGG + chr6_1:28456190-28456209 Msa0881380:CDS 45.0%
ATTTGAGGGTGGACATGCGA+TGG - chr6_1:28454183-28454202 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr6_1:28454194-28454213 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr6_1:28454220-28454239 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr6_1:28454391-28454410 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr6_1:28454596-28454615 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr6_1:28454634-28454653 Msa0881380:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr6_1:28454657-28454676 Msa0881380:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr6_1:28454817-28454836 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr6_1:28454839-28454858 Msa0881380:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr6_1:28454912-28454931 None:intergenic 50.0%
CTGTGGGACTTATCCTGTAG+GGG - chr6_1:28455302-28455321 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr6_1:28455853-28455872 Msa0881380:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr6_1:28455857-28455876 Msa0881380:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr6_1:28456155-28456174 Msa0881380:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr6_1:28456159-28456178 Msa0881380:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr6_1:28456197-28456216 None:intergenic 50.0%
ATTTGAGGGTGGACATGCGA+TGG - chr6_1:28454183-28454202 None:intergenic 50.0%
ATGTCTGCCAGATTTGAGGG+TGG - chr6_1:28454194-28454213 None:intergenic 50.0%
TGGTATTTGGACAGCAGTGC+CGG - chr6_1:28454220-28454239 None:intergenic 50.0%
GACCTCATCAGTGTGAGGAT+CGG - chr6_1:28454391-28454410 None:intergenic 50.0%
AAATCTCCATGCCAAGCGGA+GGG - chr6_1:28454596-28454615 None:intergenic 50.0%
CTGACGTTCATGGTGAAGTC+TGG + chr6_1:28454634-28454653 Msa0881380:CDS 50.0%
AAGTTTCACCATGCCTGCCA+CGG + chr6_1:28454657-28454676 Msa0881380:CDS 50.0%
! ATCTTTCTTTTGCTCCGCCG+CGG - chr6_1:28454817-28454836 None:intergenic 50.0%
GTTGGAGAAGGCAGTAATGG+AGG + chr6_1:28454839-28454858 Msa0881380:CDS 50.0%
TCATGCCAATCATCACCTCG+AGG - chr6_1:28454912-28454931 None:intergenic 50.0%
CTGTGGGACTTATCCTGTAG+GGG - chr6_1:28455302-28455321 None:intergenic 50.0%
CTCATGTATGTGTGGGTGGA+TGG + chr6_1:28455853-28455872 Msa0881380:intron 50.0%
TGTATGTGTGGGTGGATGGA+TGG + chr6_1:28455857-28455876 Msa0881380:intron 50.0%
TTCCAAGAAGAGTCAGCCCA+TGG + chr6_1:28456155-28456174 Msa0881380:CDS 50.0%
AAGAAGAGTCAGCCCATGGT+GGG + chr6_1:28456159-28456178 Msa0881380:CDS 50.0%
TCGACCTGATGCACGTTTGA+GGG - chr6_1:28456197-28456216 None:intergenic 50.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr6_1:28454164-28454183 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr6_1:28454170-28454189 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr6_1:28454184-28454203 Msa0881380:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr6_1:28454396-28454415 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr6_1:28454457-28454476 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr6_1:28454455-28454474 Msa0881380:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr6_1:28454464-28454483 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr6_1:28454587-28454606 Msa0881380:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr6_1:28454597-28454616 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr6_1:28454626-28454645 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr6_1:28454624-28454643 Msa0881380:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr6_1:28454629-28454648 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr6_1:28454658-28454677 Msa0881380:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr6_1:28454677-28454696 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr6_1:28456160-28456179 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr6_1:28456158-28456177 Msa0881380:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr6_1:28456198-28456217 None:intergenic 55.0%
ATGGTTGCTGCTGTTGGTGC+TGG - chr6_1:28454164-28454183 None:intergenic 55.0%
CATGCGATGGTTGCTGCTGT+TGG - chr6_1:28454170-28454189 None:intergenic 55.0%
CGCATGTCCACCCTCAAATC+TGG + chr6_1:28454184-28454203 Msa0881380:CDS 55.0%
GCGAAGACCTCATCAGTGTG+AGG - chr6_1:28454396-28454415 None:intergenic 55.0%
CTCATGAGGGTCTTGGACAC+AGG - chr6_1:28454457-28454476 None:intergenic 55.0%
CTGTGTCCAAGACCCTCATG+AGG + chr6_1:28454455-28454474 Msa0881380:CDS 55.0%
TGGGAACCTCATGAGGGTCT+TGG - chr6_1:28454464-28454483 None:intergenic 55.0%
TATCTTCCCTCCGCTTGGCA+TGG + chr6_1:28454587-28454606 Msa0881380:CDS 55.0%
GAAATCTCCATGCCAAGCGG+AGG - chr6_1:28454597-28454616 None:intergenic 55.0%
CATGAACGTCAGTGACGAGG+AGG - chr6_1:28454626-28454645 None:intergenic 55.0%
CTCCTCGTCACTGACGTTCA+TGG + chr6_1:28454624-28454643 Msa0881380:CDS 55.0%
CACCATGAACGTCAGTGACG+AGG - chr6_1:28454629-28454648 None:intergenic 55.0%
AGTTTCACCATGCCTGCCAC+GGG + chr6_1:28454658-28454677 Msa0881380:CDS 55.0%
CGTTTCTCTTGGCAAACCCG+TGG - chr6_1:28454677-28454696 None:intergenic 55.0%
! CACCATGGGCTGACTCTTCT+TGG - chr6_1:28456160-28456179 None:intergenic 55.0%
CAAGAAGAGTCAGCCCATGG+TGG + chr6_1:28456158-28456177 Msa0881380:CDS 55.0%
GTCGACCTGATGCACGTTTG+AGG - chr6_1:28456198-28456217 None:intergenic 55.0%
ATCGGCGAGGAGATCAACCG+CGG - chr6_1:28454373-28454392 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr6_1:28454386-28454405 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr6_1:28454386-28454405 Msa0881380:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr6_1:28454673-28454692 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr6_1:28454797-28454816 Msa0881380:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr6_1:28454857-28454876 Msa0881380:CDS 60.0%
ATCGGCGAGGAGATCAACCG+CGG - chr6_1:28454373-28454392 None:intergenic 60.0%
CATCAGTGTGAGGATCGGCG+AGG - chr6_1:28454386-28454405 None:intergenic 60.0%
CGCCGATCCTCACACTGATG+AGG + chr6_1:28454386-28454405 Msa0881380:CDS 60.0%
TCTCTTGGCAAACCCGTGGC+AGG - chr6_1:28454673-28454692 None:intergenic 60.0%
TGGGATTCGCAGGAAAGCCG+CGG + chr6_1:28454797-28454816 Msa0881380:CDS 60.0%
GGAGGCAGTGAAGTTGGCAG+AGG + chr6_1:28454857-28454876 Msa0881380:CDS 60.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr6_1:28454158-28454177 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr6_1:28454668-28454687 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr6_1:28454800-28454819 Msa0881380:CDS 65.0%
!! GCTGCTGTTGGTGCTGGTGC+TGG - chr6_1:28454158-28454177 None:intergenic 65.0%
TGGCAAACCCGTGGCAGGCA+TGG - chr6_1:28454668-28454687 None:intergenic 65.0%
GATTCGCAGGAAAGCCGCGG+CGG + chr6_1:28454800-28454819 Msa0881380:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 28454144 28456309 28454144 ID=Msa0881380;Name=Msa0881380
chr6_1 mRNA 28454144 28456309 28454144 ID=Msa0881380-mRNA-1;Parent=Msa0881380;Name=Msa0881380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|376
chr6_1 exon 28454144 28455088 28454144 ID=Msa0881380-mRNA-1:exon:7174;Parent=Msa0881380-mRNA-1
chr6_1 exon 28456124 28456309 28456124 ID=Msa0881380-mRNA-1:exon:7175;Parent=Msa0881380-mRNA-1
chr6_1 CDS 28454144 28455088 28454144 ID=Msa0881380-mRNA-1:cds;Parent=Msa0881380-mRNA-1
chr6_1 CDS 28456124 28456309 28456124 ID=Msa0881380-mRNA-1:cds;Parent=Msa0881380-mRNA-1
Gene Sequence

>Msa0881380

ATGTCTCTCAACCAGCACCAGCACCAACAGCAGCAACCATCGCATGTCCACCCTCAAATCTGGCAGACATTAACCGGCACTGCTGTCCAAATACCAAAGTTGCATTCAAGAGTTTACTATTTTCCACAAGGCCACTTAGAATATGCTTCTCCTTCCTCCTCCAATGCTTACATTCACTCCCTTCATGATCTTCAACGTTTTCGTCCTTTCACTATCTGTATCATCTCCGCGGTTGATCTCCTCGCCGATCCTCACACTGATGAGGTCTTCGCTAAACTGCTACTCACTCCAATAACCAATGATGTTGATGCCTGTGTCCAAGACCCTCATGAGGTTCCCAATTGCAACGACGATGATGAGGTAATTGGTTCGTTTACAAGGACTCTCGCCCCTACTAATGTAAGCAAGCATACATTTTACATACCTCGGTTTTGTGCTGAAAATATCTTCCCTCCGCTTGGCATGGAGATTTCTCAAAACCTCCTCGTCACTGACGTTCATGGTGAAGTCTGGAAGTTTCACCATGCCTGCCACGGGTTTGCCAAGAGAAACGTGTTTTATATCCCTGAATGGAGTTCGTTTGTTAAGAGGAAGAAACTCGACGTCGGAGATGCTGTTGTTTTCATGAAAAACTCAACGGGAAAATTATTTGTTGGGATTCGCAGGAAAGCCGCGGCGGAGCAAAAGAAAGATGAGTTGGAGAAGGCAGTAATGGAGGCAGTGAAGTTGGCAGAGGAGAACAAGCCATTTGAAATTGTTTACTATCCTCGAGGTGATGATTGGCATGATTTTGTAGTGGATGCTAATATTGTTGATGAATCAATGAAAATTCAATGGAACCCTAGAATGAGAGTTAAGATGAAGACTGATAAATCTTCAAGGATCCCATATCAAGGGACAATCTCTACTGTATCTCGTACGTCTAATTTATGGCGCATGCTACAGGTTAACTGGGATGAATTTCAAGTCTCACAAATTCCAAGAAGAGTCAGCCCATGGTGGGTTGAACTTATTTCCCTCAAACGTGCATCAGGTCGACCATTCCCCTCAACTAAAAAACTTAGAACTGTTCAAAGTTCTGCCCCATTAAGTGATGAAAAGGAATCCCCTTATATGATAAGGTTTTTGTAA
Protein sequence

>Msa0881380

MSLNQHQHQQQQPSHVHPQIWQTLTGTAVQIPKLHSRVYYFPQGHLEYASPSSSNAYIHSLHDLQRFRPFTICIISAVDLLADPHTDEVFAKLLLTPITNDVDACVQDPHEVPNCNDDDEVIGSFTRTLAPTNVSKHTFYIPRFCAENIFPPLGMEISQNLLVTDVHGEVWKFHHACHGFAKRNVFYIPEWSSFVKRKKLDVGDAVVFMKNSTGKLFVGIRRKAAAEQKKDELEKAVMEAVKLAEENKPFEIVYYPRGDDWHDFVVDANIVDESMKIQWNPRMRVKMKTDKSSRIPYQGTISTVSRTSNLWRMLQVNWDEFQVSQIPRRVSPWWVELISLKRASGRPFPSTKKLRTVQSSAPLSDEKESPYMIRFL*