Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881660 | KEH16067.1 | 93.855 | 179 | 11 | 0 | 1 | 179 | 115 | 293 | 5.74e-118 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881660 | sp|Q4V8A3|DYRK3_RAT | 39.037 | 187 | 97 | 3 | 1 | 171 | 337 | 522 | 2.02e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881660 | A0A072TFB0 | 93.855 | 179 | 11 | 0 | 1 | 179 | 115 | 293 | 2.74e-118 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881660 | MtrunA17_Chr6g0480541 | 94.413 | 179 | 10 | 0 | 1 | 179 | 1031 | 1209 | 1.72e-116 | 357 |
| Msa0881660 | MtrunA17_Chr5g0437131 | 61.017 | 177 | 69 | 0 | 1 | 177 | 536 | 712 | 1.32e-75 | 239 |
| Msa0881660 | MtrunA17_Chr6g0480291 | 91.765 | 85 | 6 | 1 | 95 | 179 | 1 | 84 | 3.35e-50 | 156 |
| Msa0881660 | MtrunA17_Chr6g0480481 | 92.424 | 66 | 5 | 0 | 1 | 66 | 131 | 196 | 4.90e-37 | 127 |
| Msa0881660 | MtrunA17_Chr6g0480471 | 94.118 | 51 | 3 | 0 | 70 | 120 | 25 | 75 | 8.04e-30 | 104 |
| Msa0881660 | MtrunA17_Chr3g0139371 | 33.939 | 165 | 104 | 2 | 14 | 173 | 237 | 401 | 2.58e-23 | 95.1 |
| Msa0881660 | MtrunA17_Chr8g0369241 | 33.628 | 226 | 98 | 8 | 1 | 176 | 269 | 492 | 2.83e-23 | 95.9 |
| Msa0881660 | MtrunA17_Chr6g0480191 | 95.238 | 42 | 2 | 0 | 138 | 179 | 1 | 42 | 5.99e-23 | 86.3 |
| Msa0881660 | MtrunA17_Chr6g0480331 | 90.698 | 43 | 4 | 0 | 117 | 159 | 2 | 44 | 2.24e-22 | 84.7 |
| Msa0881660 | MtrunA17_Chr4g0058241 | 31.429 | 175 | 115 | 3 | 1 | 170 | 249 | 423 | 1.37e-19 | 85.1 |
| Msa0881660 | MtrunA17_Chr3g0116701 | 31.481 | 162 | 106 | 3 | 14 | 170 | 258 | 419 | 6.66e-19 | 82.8 |
| Msa0881660 | MtrunA17_Chr1g0210061 | 31.053 | 190 | 105 | 5 | 1 | 171 | 744 | 926 | 9.04e-19 | 83.2 |
| Msa0881660 | MtrunA17_Chr3g0123491 | 34.337 | 166 | 98 | 2 | 14 | 171 | 259 | 421 | 2.54e-18 | 81.3 |
| Msa0881660 | MtrunA17_Chr4g0045841 | 31.034 | 174 | 101 | 5 | 1 | 171 | 184 | 341 | 2.26e-17 | 78.6 |
| Msa0881660 | MtrunA17_Chr7g0248461 | 31.429 | 175 | 100 | 5 | 1 | 171 | 167 | 325 | 2.88e-17 | 78.2 |
| Msa0881660 | MtrunA17_Chr4g0027671 | 29.518 | 166 | 103 | 3 | 15 | 171 | 319 | 479 | 7.94e-17 | 77.4 |
| Msa0881660 | MtrunA17_Chr8g0387401 | 30.286 | 175 | 102 | 5 | 1 | 171 | 181 | 339 | 1.33e-16 | 76.3 |
| Msa0881660 | MtrunA17_Chr5g0407121 | 29.412 | 170 | 105 | 5 | 11 | 171 | 252 | 415 | 3.02e-16 | 75.5 |
| Msa0881660 | MtrunA17_Chr8g0370321 | 30.357 | 168 | 103 | 5 | 11 | 170 | 249 | 410 | 3.75e-16 | 75.1 |
| Msa0881660 | MtrunA17_Chr8g0348481 | 30.114 | 176 | 101 | 5 | 1 | 171 | 166 | 324 | 4.06e-16 | 74.7 |
| Msa0881660 | MtrunA17_Chr2g0320631 | 29.213 | 178 | 112 | 5 | 2 | 171 | 307 | 478 | 6.42e-16 | 74.7 |
| Msa0881660 | MtrunA17_Chr8g0378831 | 29.834 | 181 | 106 | 6 | 1 | 176 | 161 | 325 | 1.36e-15 | 73.2 |
| Msa0881660 | MtrunA17_Chr4g0030231 | 30.726 | 179 | 104 | 6 | 1 | 175 | 169 | 331 | 3.13e-15 | 72.4 |
| Msa0881660 | MtrunA17_Chr4g0030151 | 30.286 | 175 | 102 | 7 | 1 | 171 | 168 | 326 | 4.31e-15 | 72.0 |
| Msa0881660 | MtrunA17_Chr1g0193081 | 29.609 | 179 | 107 | 6 | 1 | 176 | 203 | 365 | 7.87e-15 | 71.2 |
| Msa0881660 | MtrunA17_Chr1g0194201 | 30.726 | 179 | 105 | 6 | 1 | 176 | 203 | 365 | 8.44e-15 | 71.2 |
| Msa0881660 | MtrunA17_Chr3g0141871 | 27.717 | 184 | 110 | 6 | 1 | 178 | 161 | 327 | 1.04e-14 | 70.9 |
| Msa0881660 | MtrunA17_Chr7g0270371 | 30.814 | 172 | 100 | 6 | 1 | 169 | 203 | 358 | 1.54e-14 | 70.5 |
| Msa0881660 | MtrunA17_Chr1g0179611 | 27.374 | 179 | 114 | 5 | 2 | 171 | 308 | 479 | 1.56e-14 | 70.5 |
| Msa0881660 | MtrunA17_Chr2g0320011 | 30.726 | 179 | 105 | 6 | 1 | 176 | 216 | 378 | 2.62e-14 | 69.7 |
| Msa0881660 | MtrunA17_Chr5g0397261 | 29.545 | 176 | 102 | 5 | 1 | 171 | 170 | 328 | 5.78e-14 | 68.9 |
| Msa0881660 | MtrunA17_Chr8g0369451 | 32.203 | 177 | 92 | 7 | 1 | 170 | 128 | 283 | 1.20e-13 | 68.2 |
| Msa0881660 | MtrunA17_Chr5g0409421 | 29.143 | 175 | 100 | 5 | 1 | 170 | 128 | 283 | 1.11e-12 | 65.1 |
| Msa0881660 | MtrunA17_Chr4g0002001 | 30.508 | 177 | 96 | 7 | 1 | 170 | 147 | 303 | 3.66e-12 | 63.2 |
| Msa0881660 | MtrunA17_Chr1g0187371 | 28.161 | 174 | 104 | 5 | 1 | 170 | 152 | 308 | 1.39e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881660 | AT1G73450.1 | 84.916 | 179 | 27 | 0 | 1 | 179 | 974 | 1152 | 4.04e-107 | 331 |
| Msa0881660 | AT1G73460.2 | 84.916 | 179 | 27 | 0 | 1 | 179 | 991 | 1169 | 1.01e-106 | 330 |
| Msa0881660 | AT1G73460.1 | 84.916 | 179 | 27 | 0 | 1 | 179 | 991 | 1169 | 1.01e-106 | 330 |
| Msa0881660 | AT3G17750.1 | 85.475 | 179 | 26 | 0 | 1 | 179 | 960 | 1138 | 4.68e-104 | 323 |
| Msa0881660 | AT2G40120.1 | 60.234 | 171 | 68 | 0 | 1 | 171 | 394 | 564 | 2.83e-70 | 223 |
| Msa0881660 | AT4G03175.1 | 52.174 | 92 | 44 | 0 | 80 | 171 | 2 | 93 | 2.04e-31 | 109 |
| Msa0881660 | AT4G24740.10 | 33.742 | 163 | 103 | 3 | 14 | 171 | 56 | 218 | 7.22e-23 | 91.3 |
| Msa0881660 | AT4G24740.8 | 33.742 | 163 | 103 | 3 | 14 | 171 | 56 | 218 | 7.22e-23 | 91.3 |
| Msa0881660 | AT4G24740.6 | 33.742 | 163 | 103 | 3 | 14 | 171 | 159 | 321 | 5.57e-22 | 90.9 |
| Msa0881660 | AT4G24740.9 | 33.742 | 163 | 103 | 3 | 14 | 171 | 159 | 321 | 5.57e-22 | 90.9 |
| Msa0881660 | AT4G24740.2 | 33.742 | 163 | 103 | 3 | 14 | 171 | 159 | 321 | 5.57e-22 | 90.9 |
| Msa0881660 | AT4G24740.7 | 33.129 | 163 | 104 | 3 | 14 | 171 | 224 | 386 | 1.10e-21 | 90.9 |
| Msa0881660 | AT4G24740.1 | 33.129 | 163 | 104 | 3 | 14 | 171 | 262 | 424 | 1.34e-21 | 90.9 |
| Msa0881660 | AT5G35980.2 | 31.696 | 224 | 105 | 7 | 1 | 176 | 252 | 475 | 1.31e-20 | 88.6 |
| Msa0881660 | AT3G53570.3 | 32.927 | 164 | 104 | 3 | 14 | 171 | 267 | 430 | 1.34e-20 | 88.2 |
| Msa0881660 | AT3G53570.5 | 32.927 | 164 | 104 | 3 | 14 | 171 | 267 | 430 | 1.34e-20 | 88.2 |
| Msa0881660 | AT3G53570.1 | 32.927 | 164 | 104 | 3 | 14 | 171 | 281 | 444 | 1.36e-20 | 88.2 |
| Msa0881660 | AT3G53570.4 | 32.927 | 164 | 104 | 3 | 14 | 171 | 281 | 444 | 1.36e-20 | 88.2 |
| Msa0881660 | AT3G53570.2 | 32.927 | 164 | 104 | 3 | 14 | 171 | 281 | 444 | 1.36e-20 | 88.2 |
| Msa0881660 | AT5G35980.3 | 31.696 | 224 | 105 | 7 | 1 | 176 | 217 | 440 | 1.85e-20 | 88.2 |
| Msa0881660 | AT5G35980.1 | 31.696 | 224 | 105 | 7 | 1 | 176 | 252 | 475 | 1.86e-20 | 88.2 |
| Msa0881660 | AT4G32660.4 | 34.969 | 163 | 100 | 3 | 14 | 170 | 122 | 284 | 4.54e-20 | 85.1 |
| Msa0881660 | AT4G32660.3 | 34.969 | 163 | 100 | 3 | 14 | 170 | 226 | 388 | 1.29e-19 | 85.1 |
| Msa0881660 | AT4G32660.1 | 34.969 | 163 | 100 | 3 | 14 | 170 | 234 | 396 | 1.40e-19 | 85.1 |
| Msa0881660 | AT1G13350.3 | 31.351 | 185 | 112 | 5 | 1 | 171 | 649 | 832 | 3.05e-19 | 84.7 |
| Msa0881660 | AT3G53640.1 | 31.892 | 185 | 111 | 5 | 1 | 171 | 457 | 640 | 4.34e-19 | 84.3 |
| Msa0881660 | AT1G13350.2 | 31.351 | 185 | 112 | 5 | 1 | 171 | 603 | 786 | 5.80e-19 | 84.0 |
| Msa0881660 | AT1G13350.1 | 32.432 | 185 | 110 | 6 | 1 | 171 | 576 | 759 | 6.17e-19 | 84.0 |
| Msa0881660 | AT3G44850.1 | 30.769 | 169 | 103 | 5 | 12 | 171 | 319 | 482 | 1.86e-18 | 82.4 |
| Msa0881660 | AT3G25840.2 | 32.609 | 184 | 110 | 7 | 1 | 171 | 489 | 671 | 6.81e-17 | 77.8 |
| Msa0881660 | AT5G22840.1 | 29.518 | 166 | 103 | 4 | 15 | 171 | 311 | 471 | 8.11e-17 | 77.8 |
| Msa0881660 | AT4G35500.1 | 29.586 | 169 | 105 | 5 | 11 | 171 | 255 | 417 | 9.89e-17 | 77.4 |
| Msa0881660 | AT4G35500.2 | 29.586 | 169 | 105 | 5 | 11 | 171 | 256 | 418 | 1.25e-16 | 77.0 |
| Msa0881660 | AT3G25840.1 | 32.609 | 184 | 110 | 7 | 1 | 171 | 751 | 933 | 2.51e-16 | 76.3 |
| Msa0881660 | AT2G17530.1 | 28.994 | 169 | 106 | 5 | 11 | 171 | 254 | 416 | 3.40e-16 | 75.9 |
| Msa0881660 | AT2G17530.3 | 28.994 | 169 | 106 | 5 | 11 | 171 | 254 | 416 | 3.40e-16 | 75.9 |
| Msa0881660 | AT3G53030.1 | 29.518 | 166 | 103 | 4 | 15 | 171 | 307 | 467 | 7.42e-16 | 74.7 |
| Msa0881660 | AT4G24740.5 | 42.353 | 85 | 49 | 0 | 14 | 98 | 159 | 243 | 8.66e-16 | 73.2 |
| Msa0881660 | AT4G11330.1 | 30.899 | 178 | 97 | 7 | 1 | 171 | 172 | 330 | 1.47e-15 | 73.6 |
| Msa0881660 | AT4G24740.3 | 42.353 | 85 | 49 | 0 | 14 | 98 | 262 | 346 | 1.78e-15 | 73.2 |
| Msa0881660 | AT2G46070.3 | 29.310 | 174 | 105 | 3 | 1 | 171 | 204 | 362 | 1.86e-15 | 73.6 |
| Msa0881660 | AT2G46070.1 | 29.310 | 174 | 105 | 3 | 1 | 171 | 170 | 328 | 1.87e-15 | 73.6 |
| Msa0881660 | AT3G59790.1 | 29.885 | 174 | 103 | 4 | 1 | 171 | 189 | 346 | 1.97e-15 | 73.6 |
| Msa0881660 | AT4G01370.1 | 30.114 | 176 | 101 | 5 | 1 | 171 | 172 | 330 | 2.57e-15 | 73.2 |
| Msa0881660 | AT1G01560.2 | 29.570 | 186 | 105 | 6 | 1 | 177 | 169 | 337 | 3.16e-15 | 72.8 |
| Msa0881660 | AT4G36450.1 | 29.609 | 179 | 106 | 5 | 1 | 176 | 161 | 322 | 4.26e-15 | 72.4 |
| Msa0881660 | AT5G14640.1 | 30.726 | 179 | 105 | 6 | 1 | 176 | 202 | 364 | 1.00e-14 | 71.2 |
| Msa0881660 | AT5G14640.2 | 30.726 | 179 | 105 | 6 | 1 | 176 | 202 | 364 | 1.00e-14 | 71.2 |
| Msa0881660 | AT1G10210.2 | 30.220 | 182 | 104 | 5 | 1 | 176 | 161 | 325 | 1.13e-14 | 71.2 |
| Msa0881660 | AT1G10210.3 | 30.220 | 182 | 104 | 5 | 1 | 176 | 161 | 325 | 1.13e-14 | 71.2 |
| Msa0881660 | AT1G10210.1 | 30.220 | 182 | 104 | 5 | 1 | 176 | 161 | 325 | 1.13e-14 | 71.2 |
| Msa0881660 | AT1G76540.1 | 29.885 | 174 | 101 | 5 | 1 | 170 | 148 | 304 | 1.21e-14 | 70.9 |
| Msa0881660 | AT4G32660.2 | 39.175 | 97 | 58 | 1 | 14 | 109 | 234 | 330 | 2.32e-14 | 70.1 |
| Msa0881660 | AT4G18710.1 | 30.168 | 179 | 106 | 6 | 1 | 176 | 168 | 330 | 2.89e-14 | 70.1 |
| Msa0881660 | AT3G05840.2 | 29.609 | 179 | 107 | 6 | 1 | 176 | 201 | 363 | 3.29e-14 | 70.1 |
| Msa0881660 | AT3G05840.1 | 29.609 | 179 | 107 | 6 | 1 | 176 | 201 | 363 | 3.29e-14 | 70.1 |
| Msa0881660 | AT5G26751.1 | 29.609 | 179 | 107 | 6 | 1 | 176 | 197 | 359 | 5.24e-14 | 69.3 |
| Msa0881660 | AT1G06390.2 | 30.168 | 179 | 106 | 6 | 1 | 176 | 198 | 360 | 6.13e-14 | 69.3 |
| Msa0881660 | AT1G06390.1 | 30.168 | 179 | 106 | 6 | 1 | 176 | 198 | 360 | 6.13e-14 | 69.3 |
| Msa0881660 | AT2G43790.1 | 28.736 | 174 | 105 | 4 | 1 | 171 | 192 | 349 | 8.98e-14 | 68.6 |
| Msa0881660 | AT1G20930.1 | 28.814 | 177 | 99 | 5 | 1 | 170 | 150 | 306 | 1.41e-13 | 67.8 |
| Msa0881660 | AT1G07880.2 | 28.333 | 180 | 107 | 5 | 1 | 175 | 162 | 324 | 1.69e-13 | 67.8 |
| Msa0881660 | AT2G30980.1 | 29.609 | 179 | 107 | 6 | 1 | 176 | 200 | 362 | 2.04e-13 | 67.8 |
| Msa0881660 | AT4G19110.3 | 26.857 | 175 | 104 | 5 | 1 | 170 | 72 | 227 | 2.31e-13 | 67.4 |
| Msa0881660 | AT4G19110.1 | 26.857 | 175 | 104 | 5 | 1 | 170 | 128 | 283 | 3.00e-13 | 67.4 |
| Msa0881660 | AT4G19110.2 | 26.857 | 175 | 104 | 5 | 1 | 170 | 128 | 283 | 3.10e-13 | 67.4 |
| Msa0881660 | AT1G59580.2 | 28.022 | 182 | 108 | 5 | 1 | 176 | 161 | 325 | 3.66e-13 | 67.0 |
| Msa0881660 | AT1G59580.1 | 28.022 | 182 | 108 | 5 | 1 | 176 | 161 | 325 | 3.66e-13 | 67.0 |
| Msa0881660 | AT4G00720.1 | 29.050 | 179 | 108 | 6 | 1 | 176 | 266 | 428 | 1.36e-12 | 65.5 |
| Msa0881660 | AT5G45430.2 | 26.857 | 175 | 104 | 5 | 1 | 170 | 128 | 283 | 6.03e-12 | 63.5 |
| Msa0881660 | AT5G45430.1 | 26.857 | 175 | 104 | 5 | 1 | 170 | 128 | 283 | 6.15e-12 | 63.5 |
| Msa0881660 | AT2G01450.3 | 29.688 | 192 | 100 | 7 | 1 | 176 | 145 | 317 | 1.92e-11 | 62.0 |
| Msa0881660 | AT2G01450.1 | 29.688 | 192 | 100 | 7 | 1 | 176 | 145 | 317 | 1.92e-11 | 62.0 |
| Msa0881660 | AT2G01450.2 | 29.688 | 192 | 100 | 7 | 1 | 176 | 145 | 317 | 1.92e-11 | 62.0 |
| Msa0881660 | AT2G01450.4 | 29.688 | 192 | 100 | 7 | 1 | 176 | 145 | 317 | 1.92e-11 | 62.0 |
| Msa0881660 | AT1G67580.1 | 32.143 | 168 | 97 | 6 | 10 | 170 | 540 | 697 | 2.69e-11 | 61.6 |
| Msa0881660 | AT1G67580.2 | 32.143 | 168 | 97 | 6 | 10 | 170 | 540 | 697 | 2.69e-11 | 61.6 |
| Msa0881660 | AT3G14720.1 | 30.220 | 182 | 96 | 6 | 1 | 170 | 154 | 316 | 6.30e-11 | 60.5 |
Find 54 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAGCCGAAGAATATTT+TGG | 0.219098 | 6_1:-29217118 | None:intergenic |
| AAGATGTCTTCTTTGGTATC+AGG | 0.307371 | 6_1:+29215484 | None:intergenic |
| TGCCTCAAAGATGTCTTCTT+TGG | 0.313594 | 6_1:+29215477 | None:intergenic |
| GATGCAGAAAGTCGCTTCTT+CGG | 0.338939 | 6_1:+29215393 | None:intergenic |
| ACATTACTAGCTAGAGTAAT+GGG | 0.342763 | 6_1:-29216049 | Msa0881660:CDS |
| GCTAGCATACTTTGACCAAT+AGG | 0.356888 | 6_1:+29216016 | None:intergenic |
| ATGTTGCCGGGGAATCGTTT+TGG | 0.360032 | 6_1:+29216068 | None:intergenic |
| ATGCAGAAAGTCGCTTCTTC+GGG | 0.378012 | 6_1:+29215394 | None:intergenic |
| ACTCTAGCTAGTAATGTTGC+CGG | 0.422485 | 6_1:+29216055 | None:intergenic |
| ATGGGGATCATCGGTCCTAT+TGG | 0.454025 | 6_1:-29216031 | Msa0881660:CDS |
| CTCTAGCTAGTAATGTTGCC+GGG | 0.460253 | 6_1:+29216056 | None:intergenic |
| TTGATATGCAGGAAAGCAAC+AGG | 0.462723 | 6_1:-29215515 | Msa0881660:intron |
| ATGACAAGAAGATTGATATC+TGG | 0.466209 | 6_1:-29216966 | Msa0881660:CDS |
| AGAATACTTCAAGATGATAT+CGG | 0.467186 | 6_1:+29215330 | None:intergenic |
| TATATGTTCTTGCAGTTGTA+GGG | 0.471803 | 6_1:-29216201 | Msa0881660:intron |
| CGTGCTCCCGAGGATATTCT+CGG | 0.473448 | 6_1:-29216997 | Msa0881660:CDS |
| AATATCCTCGGGAGCACGAT+AGG | 0.478256 | 6_1:+29217002 | None:intergenic |
| CAAGATGATATCGGTTCGTA+AGG | 0.480516 | 6_1:+29215339 | None:intergenic |
| AAGATTGATATCTGGTCCCT+TGG | 0.494002 | 6_1:-29216958 | Msa0881660:CDS |
| TATGCTTTATGAGAGGAATC+AGG | 0.494533 | 6_1:-29215954 | Msa0881660:intron |
| CTGGTCCCTTGGATACATCT+TGG | 0.498221 | 6_1:-29216947 | Msa0881660:CDS |
| GGTCAAAGTATGCTAGCAAA+AGG | 0.504501 | 6_1:-29216010 | Msa0881660:CDS |
| CTGAAGCTCTAAAGCACCCC+TGG | 0.508338 | 6_1:-29215371 | Msa0881660:CDS |
| CAACGAAGTCAATGAAGCCT+TGG | 0.513679 | 6_1:+29215436 | None:intergenic |
| TACCAAAGAAGACATCTTTG+AGG | 0.517001 | 6_1:-29215479 | Msa0881660:CDS |
| GAGGTGAAGGTCATTGATCT+TGG | 0.522315 | 6_1:-29217075 | Msa0881660:CDS |
| TTCGTAAGGGTATGATAACC+AGG | 0.523874 | 6_1:+29215353 | None:intergenic |
| CTTCGTTGCTCATTTGCTTG+AGG | 0.524032 | 6_1:-29215421 | Msa0881660:CDS |
| AAAGTATGCTAGCAAAAGGT+CGG | 0.525450 | 6_1:-29216006 | Msa0881660:CDS |
| TTTGCTCATATGTTCAGTCC+AGG | 0.529127 | 6_1:-29217026 | Msa0881660:CDS |
| AACATTACTAGCTAGAGTAA+TGG | 0.536876 | 6_1:-29216050 | Msa0881660:CDS |
| CTCGGGAGCACGATAGGACC+TGG | 0.537644 | 6_1:+29217008 | None:intergenic |
| AAGTATGCTAGCAAAAGGTC+GGG | 0.543538 | 6_1:-29216005 | Msa0881660:CDS |
| TTTGAGGCATAGATTACCGA+TGG | 0.557764 | 6_1:-29215463 | Msa0881660:CDS |
| TGAAATCCCGAGAATATCCT+CGG | 0.559592 | 6_1:+29216990 | None:intergenic |
| CTTATTCCAAAACGATTCCC+CGG | 0.573187 | 6_1:-29216074 | Msa0881660:CDS |
| TTGAGGCATAGATTACCGAT+GGG | 0.601000 | 6_1:-29215462 | Msa0881660:CDS |
| GTTCTGCCAAGATGTATCCA+AGG | 0.606250 | 6_1:+29216941 | None:intergenic |
| GCTAGAGTAATGGGGATCAT+CGG | 0.614626 | 6_1:-29216040 | Msa0881660:CDS |
| CTACAGCCGATGTGAGGTGA+AGG | 0.619012 | 6_1:-29217088 | Msa0881660:CDS |
| AAAATCATATGCTTTATGAG+AGG | 0.623112 | 6_1:-29215961 | Msa0881660:CDS |
| GTGCTCCCGAGGATATTCTC+GGG | 0.627630 | 6_1:-29216996 | Msa0881660:CDS |
| TTCTGCCAAGATGTATCCAA+GGG | 0.635300 | 6_1:+29216942 | None:intergenic |
| GAAATCCCGAGAATATCCTC+GGG | 0.642293 | 6_1:+29216991 | None:intergenic |
| TAAAAGCTACAGCCGATGTG+AGG | 0.648020 | 6_1:-29217094 | Msa0881660:CDS |
| TCTAGCTAGTAATGTTGCCG+GGG | 0.654367 | 6_1:+29216057 | None:intergenic |
| AAGATGATATCGGTTCGTAA+GGG | 0.655236 | 6_1:+29215340 | None:intergenic |
| TGGACTGAACATATGAGCAA+AGG | 0.655558 | 6_1:+29217028 | None:intergenic |
| TCGTAAGGGTATGATAACCA+GGG | 0.667962 | 6_1:+29215354 | None:intergenic |
| CATTACTAGCTAGAGTAATG+GGG | 0.686080 | 6_1:-29216048 | Msa0881660:CDS |
| CGTAAGGGTATGATAACCAG+GGG | 0.686121 | 6_1:+29215355 | None:intergenic |
| CAATGACCTTCACCTCACAT+CGG | 0.686191 | 6_1:+29217082 | None:intergenic |
| TGAGGCATAGATTACCGATG+GGG | 0.713357 | 6_1:-29215461 | Msa0881660:CDS |
| GAGGCATAGATTACCGATGG+GGG | 0.717861 | 6_1:-29215460 | Msa0881660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAATTTGAAAATGATT+TGG | - | chr6_1:29215972-29215991 | Msa0881660:CDS | 10.0% |
| !! | TTTAAATTTGAAAATGATTT+GGG | - | chr6_1:29215973-29215992 | Msa0881660:CDS | 10.0% |
| !!! | TTTTAAATTTGAAAATGATT+TGG | - | chr6_1:29215972-29215991 | Msa0881660:CDS | 10.0% |
| !! | TTTAAATTTGAAAATGATTT+GGG | - | chr6_1:29215973-29215992 | Msa0881660:CDS | 10.0% |
| !!! | CTTTTAACCAAAATATTCTT+CGG | + | chr6_1:29215341-29215360 | None:intergenic | 20.0% |
| !! | GCTTAAGTTTGAAAAAAATT+TGG | + | chr6_1:29215577-29215596 | None:intergenic | 20.0% |
| !!! | ATTTACATTCTACATTTTTG+AGG | - | chr6_1:29215833-29215852 | Msa0881660:intron | 20.0% |
| !!! | AAAATGATTTGTGACATATT+AGG | - | chr6_1:29216204-29216223 | Msa0881660:intron | 20.0% |
| !!! | ACGAACATTTTAGAAATTTT+AGG | + | chr6_1:29216560-29216579 | None:intergenic | 20.0% |
| !! | CATTGTATGTTTAATTATCA+TGG | - | chr6_1:29216884-29216903 | Msa0881660:intron | 20.0% |
| !!! | CTTTTAACCAAAATATTCTT+CGG | + | chr6_1:29215341-29215360 | None:intergenic | 20.0% |
| !! | GCTTAAGTTTGAAAAAAATT+TGG | + | chr6_1:29215577-29215596 | None:intergenic | 20.0% |
| !!! | ATTTACATTCTACATTTTTG+AGG | - | chr6_1:29215833-29215852 | Msa0881660:intron | 20.0% |
| !!! | AAAATGATTTGTGACATATT+AGG | - | chr6_1:29216204-29216223 | Msa0881660:intron | 20.0% |
| !!! | ACGAACATTTTAGAAATTTT+AGG | + | chr6_1:29216560-29216579 | None:intergenic | 20.0% |
| !! | CATTGTATGTTTAATTATCA+TGG | - | chr6_1:29216884-29216903 | Msa0881660:intron | 20.0% |
| !!! | TTGGCATTTTGAAATTGAAT+TGG | + | chr6_1:29215558-29215577 | None:intergenic | 25.0% |
| ! | CAAATACTACTTACACAAAT+TGG | + | chr6_1:29215735-29215754 | None:intergenic | 25.0% |
| ! | TATTCTATCCTATTATAACC+TGG | + | chr6_1:29215813-29215832 | None:intergenic | 25.0% |
| ! | TTACTTCATCTGTTTATTTC+AGG | + | chr6_1:29215951-29215970 | None:intergenic | 25.0% |
| !! | TTGTAGGGTTTTTACATTTT+TGG | - | chr6_1:29216263-29216282 | Msa0881660:intron | 25.0% |
| !!! | TTTACATTTTTGGTTGAAAG+CGG | - | chr6_1:29216273-29216292 | Msa0881660:intron | 25.0% |
| ! | AAAATCATATGCTTTATGAG+AGG | - | chr6_1:29216488-29216507 | Msa0881660:intron | 25.0% |
| ! | ATGTTTAATATGAGCATGTT+TGG | + | chr6_1:29216863-29216882 | None:intergenic | 25.0% |
| !!! | TTGGCATTTTGAAATTGAAT+TGG | + | chr6_1:29215558-29215577 | None:intergenic | 25.0% |
| ! | CAAATACTACTTACACAAAT+TGG | + | chr6_1:29215735-29215754 | None:intergenic | 25.0% |
| ! | TATTCTATCCTATTATAACC+TGG | + | chr6_1:29215813-29215832 | None:intergenic | 25.0% |
| ! | TTACTTCATCTGTTTATTTC+AGG | + | chr6_1:29215951-29215970 | None:intergenic | 25.0% |
| !! | TTGTAGGGTTTTTACATTTT+TGG | - | chr6_1:29216263-29216282 | Msa0881660:intron | 25.0% |
| !!! | TTTACATTTTTGGTTGAAAG+CGG | - | chr6_1:29216273-29216292 | Msa0881660:intron | 25.0% |
| ! | AAAATCATATGCTTTATGAG+AGG | - | chr6_1:29216488-29216507 | Msa0881660:intron | 25.0% |
| ! | ATGTTTAATATGAGCATGTT+TGG | + | chr6_1:29216863-29216882 | None:intergenic | 25.0% |
| ATGACAAGAAGATTGATATC+TGG | - | chr6_1:29215483-29215502 | Msa0881660:CDS | 30.0% | |
| !!! | CTCTAGTTTTGCTCTTTAAT+AGG | - | chr6_1:29215640-29215659 | Msa0881660:intron | 30.0% |
| ! | GATCAAGCAAGTAAATTTTG+GGG | + | chr6_1:29215675-29215694 | None:intergenic | 30.0% |
| ! | GGATCAAGCAAGTAAATTTT+GGG | + | chr6_1:29215676-29215695 | None:intergenic | 30.0% |
| ! | AGGATCAAGCAAGTAAATTT+TGG | + | chr6_1:29215677-29215696 | None:intergenic | 30.0% |
| !!! | TCTTAGTCTTAGGAAGTTTT+TGG | - | chr6_1:29215784-29215803 | Msa0881660:intron | 30.0% |
| GAACACGAATGGAATTAAAT+GGG | + | chr6_1:29215919-29215938 | None:intergenic | 30.0% | |
| ! | TGTTTATTTCAGGTAGTGTT+TGG | + | chr6_1:29215941-29215960 | None:intergenic | 30.0% |
| !! | ATTTGGGTGTTGTTAAATAG+CGG | - | chr6_1:29215989-29216008 | Msa0881660:CDS | 30.0% |
| !!! | ATGAGTTTCTGTAGTTTTAG+TGG | - | chr6_1:29216152-29216171 | Msa0881660:intron | 30.0% |
| GATTTGTGACATATTAGGTA+CGG | - | chr6_1:29216209-29216228 | Msa0881660:intron | 30.0% | |
| TTATATGTTCTTGCAGTTGT+AGG | - | chr6_1:29216247-29216266 | Msa0881660:intron | 30.0% | |
| TATATGTTCTTGCAGTTGTA+GGG | - | chr6_1:29216248-29216267 | Msa0881660:intron | 30.0% | |
| AACATTACTAGCTAGAGTAA+TGG | - | chr6_1:29216399-29216418 | Msa0881660:intron | 30.0% | |
| ACATTACTAGCTAGAGTAAT+GGG | - | chr6_1:29216400-29216419 | Msa0881660:intron | 30.0% | |
| GTAATTTCCATAAACTCTCT+AGG | + | chr6_1:29216738-29216757 | None:intergenic | 30.0% | |
| AGACTGTTTGAGAGAATTTA+TGG | + | chr6_1:29216796-29216815 | None:intergenic | 30.0% | |
| AATATGAGCATGTTTGGATT+GGG | + | chr6_1:29216857-29216876 | None:intergenic | 30.0% | |
| TAATATGAGCATGTTTGGAT+TGG | + | chr6_1:29216858-29216877 | None:intergenic | 30.0% | |
| CATGGAAAAATTATTCAGTG+AGG | - | chr6_1:29216902-29216921 | Msa0881660:intron | 30.0% | |
| ATGACAAGAAGATTGATATC+TGG | - | chr6_1:29215483-29215502 | Msa0881660:CDS | 30.0% | |
| !!! | CTCTAGTTTTGCTCTTTAAT+AGG | - | chr6_1:29215640-29215659 | Msa0881660:intron | 30.0% |
| ! | GATCAAGCAAGTAAATTTTG+GGG | + | chr6_1:29215675-29215694 | None:intergenic | 30.0% |
| ! | GGATCAAGCAAGTAAATTTT+GGG | + | chr6_1:29215676-29215695 | None:intergenic | 30.0% |
| ! | AGGATCAAGCAAGTAAATTT+TGG | + | chr6_1:29215677-29215696 | None:intergenic | 30.0% |
| !!! | TCTTAGTCTTAGGAAGTTTT+TGG | - | chr6_1:29215784-29215803 | Msa0881660:intron | 30.0% |
| GAACACGAATGGAATTAAAT+GGG | + | chr6_1:29215919-29215938 | None:intergenic | 30.0% | |
| ! | TGTTTATTTCAGGTAGTGTT+TGG | + | chr6_1:29215941-29215960 | None:intergenic | 30.0% |
| !! | ATTTGGGTGTTGTTAAATAG+CGG | - | chr6_1:29215989-29216008 | Msa0881660:CDS | 30.0% |
| !!! | ATGAGTTTCTGTAGTTTTAG+TGG | - | chr6_1:29216152-29216171 | Msa0881660:intron | 30.0% |
| GATTTGTGACATATTAGGTA+CGG | - | chr6_1:29216209-29216228 | Msa0881660:intron | 30.0% | |
| TTATATGTTCTTGCAGTTGT+AGG | - | chr6_1:29216247-29216266 | Msa0881660:intron | 30.0% | |
| TATATGTTCTTGCAGTTGTA+GGG | - | chr6_1:29216248-29216267 | Msa0881660:intron | 30.0% | |
| AACATTACTAGCTAGAGTAA+TGG | - | chr6_1:29216399-29216418 | Msa0881660:intron | 30.0% | |
| ACATTACTAGCTAGAGTAAT+GGG | - | chr6_1:29216400-29216419 | Msa0881660:intron | 30.0% | |
| GTAATTTCCATAAACTCTCT+AGG | + | chr6_1:29216738-29216757 | None:intergenic | 30.0% | |
| AGACTGTTTGAGAGAATTTA+TGG | + | chr6_1:29216796-29216815 | None:intergenic | 30.0% | |
| AATATGAGCATGTTTGGATT+GGG | + | chr6_1:29216857-29216876 | None:intergenic | 30.0% | |
| TAATATGAGCATGTTTGGAT+TGG | + | chr6_1:29216858-29216877 | None:intergenic | 30.0% | |
| CATGGAAAAATTATTCAGTG+AGG | - | chr6_1:29216902-29216921 | Msa0881660:intron | 30.0% | |
| ! | GTTGTATCACTCTTAGTCTT+AGG | - | chr6_1:29215774-29215793 | Msa0881660:intron | 35.0% |
| ! | TTTGGTAGCCAGGTTATAAT+AGG | - | chr6_1:29215802-29215821 | Msa0881660:intron | 35.0% |
| GGAACACGAATGGAATTAAA+TGG | + | chr6_1:29215920-29215939 | None:intergenic | 35.0% | |
| AACTCAACTATGCTTATTGC+AGG | - | chr6_1:29216351-29216370 | Msa0881660:intron | 35.0% | |
| CATTACTAGCTAGAGTAATG+GGG | - | chr6_1:29216401-29216420 | Msa0881660:intron | 35.0% | |
| AAAGTATGCTAGCAAAAGGT+CGG | - | chr6_1:29216443-29216462 | Msa0881660:intron | 35.0% | |
| TATGCTTTATGAGAGGAATC+AGG | - | chr6_1:29216495-29216514 | Msa0881660:intron | 35.0% | |
| !! | TCGCTTGTATTTGCTATGTT+TGG | - | chr6_1:29216580-29216599 | Msa0881660:intron | 35.0% |
| TTGCAATCCTAGAGAGTTTA+TGG | - | chr6_1:29216728-29216747 | Msa0881660:intron | 35.0% | |
| ! | GGTATTGTGTATTGATATGC+AGG | - | chr6_1:29216923-29216942 | Msa0881660:intron | 35.0% |
| AAGATGTCTTCTTTGGTATC+AGG | + | chr6_1:29216968-29216987 | None:intergenic | 35.0% | |
| TACCAAAGAAGACATCTTTG+AGG | - | chr6_1:29216970-29216989 | Msa0881660:CDS | 35.0% | |
| !! | AAGATGATATCGGTTCGTAA+GGG | + | chr6_1:29217112-29217131 | None:intergenic | 35.0% |
| ! | GTTGTATCACTCTTAGTCTT+AGG | - | chr6_1:29215774-29215793 | Msa0881660:intron | 35.0% |
| ! | TTTGGTAGCCAGGTTATAAT+AGG | - | chr6_1:29215802-29215821 | Msa0881660:intron | 35.0% |
| GGAACACGAATGGAATTAAA+TGG | + | chr6_1:29215920-29215939 | None:intergenic | 35.0% | |
| AACTCAACTATGCTTATTGC+AGG | - | chr6_1:29216351-29216370 | Msa0881660:intron | 35.0% | |
| CATTACTAGCTAGAGTAATG+GGG | - | chr6_1:29216401-29216420 | Msa0881660:intron | 35.0% | |
| AAAGTATGCTAGCAAAAGGT+CGG | - | chr6_1:29216443-29216462 | Msa0881660:intron | 35.0% | |
| TATGCTTTATGAGAGGAATC+AGG | - | chr6_1:29216495-29216514 | Msa0881660:intron | 35.0% | |
| !! | TCGCTTGTATTTGCTATGTT+TGG | - | chr6_1:29216580-29216599 | Msa0881660:intron | 35.0% |
| TTGCAATCCTAGAGAGTTTA+TGG | - | chr6_1:29216728-29216747 | Msa0881660:intron | 35.0% | |
| ! | GGTATTGTGTATTGATATGC+AGG | - | chr6_1:29216923-29216942 | Msa0881660:intron | 35.0% |
| AAGATGTCTTCTTTGGTATC+AGG | + | chr6_1:29216968-29216987 | None:intergenic | 35.0% | |
| TACCAAAGAAGACATCTTTG+AGG | - | chr6_1:29216970-29216989 | Msa0881660:CDS | 35.0% | |
| !! | AAGATGATATCGGTTCGTAA+GGG | + | chr6_1:29217112-29217131 | None:intergenic | 35.0% |
| TGGACTGAACATATGAGCAA+AGG | + | chr6_1:29215424-29215443 | None:intergenic | 40.0% | |
| TTTGCTCATATGTTCAGTCC+AGG | - | chr6_1:29215423-29215442 | Msa0881660:CDS | 40.0% | |
| TGAAATCCCGAGAATATCCT+CGG | + | chr6_1:29215462-29215481 | None:intergenic | 40.0% | |
| AAGATTGATATCTGGTCCCT+TGG | - | chr6_1:29215491-29215510 | Msa0881660:CDS | 40.0% | |
| TTCTGCCAAGATGTATCCAA+GGG | + | chr6_1:29215510-29215529 | None:intergenic | 40.0% | |
| CTCTAACACGAAAATAGACG+TGG | + | chr6_1:29215607-29215626 | None:intergenic | 40.0% | |
| ! | CACGTCTATTTTCGTGTTAG+AGG | - | chr6_1:29215605-29215624 | Msa0881660:intron | 40.0% |
| !!! | TTAGGAAGTTTTTGGTAGCC+AGG | - | chr6_1:29215792-29215811 | Msa0881660:intron | 40.0% |
| TCGCAGATCGCAAAAAATAG+TGG | + | chr6_1:29216121-29216140 | None:intergenic | 40.0% | |
| CTTATTCCAAAACGATTCCC+CGG | - | chr6_1:29216375-29216394 | Msa0881660:intron | 40.0% | |
| ACTCTAGCTAGTAATGTTGC+CGG | + | chr6_1:29216397-29216416 | None:intergenic | 40.0% | |
| GCTAGCATACTTTGACCAAT+AGG | + | chr6_1:29216436-29216455 | None:intergenic | 40.0% | |
| GGTCAAAGTATGCTAGCAAA+AGG | - | chr6_1:29216439-29216458 | Msa0881660:intron | 40.0% | |
| AAGTATGCTAGCAAAAGGTC+GGG | - | chr6_1:29216444-29216463 | Msa0881660:intron | 40.0% | |
| TTGATATGCAGGAAAGCAAC+AGG | - | chr6_1:29216934-29216953 | Msa0881660:CDS | 40.0% | |
| TGCCTCAAAGATGTCTTCTT+TGG | + | chr6_1:29216975-29216994 | None:intergenic | 40.0% | |
| ! | TTTGAGGCATAGATTACCGA+TGG | - | chr6_1:29216986-29217005 | Msa0881660:CDS | 40.0% |
| TTGAGGCATAGATTACCGAT+GGG | - | chr6_1:29216987-29217006 | Msa0881660:CDS | 40.0% | |
| ! | TCGTAAGGGTATGATAACCA+GGG | + | chr6_1:29217098-29217117 | None:intergenic | 40.0% |
| ! | TTCGTAAGGGTATGATAACC+AGG | + | chr6_1:29217099-29217118 | None:intergenic | 40.0% |
| !! | CAAGATGATATCGGTTCGTA+AGG | + | chr6_1:29217113-29217132 | None:intergenic | 40.0% |
| TGGACTGAACATATGAGCAA+AGG | + | chr6_1:29215424-29215443 | None:intergenic | 40.0% | |
| TTTGCTCATATGTTCAGTCC+AGG | - | chr6_1:29215423-29215442 | Msa0881660:CDS | 40.0% | |
| TGAAATCCCGAGAATATCCT+CGG | + | chr6_1:29215462-29215481 | None:intergenic | 40.0% | |
| AAGATTGATATCTGGTCCCT+TGG | - | chr6_1:29215491-29215510 | Msa0881660:CDS | 40.0% | |
| TTCTGCCAAGATGTATCCAA+GGG | + | chr6_1:29215510-29215529 | None:intergenic | 40.0% | |
| CTCTAACACGAAAATAGACG+TGG | + | chr6_1:29215607-29215626 | None:intergenic | 40.0% | |
| ! | CACGTCTATTTTCGTGTTAG+AGG | - | chr6_1:29215605-29215624 | Msa0881660:intron | 40.0% |
| !!! | TTAGGAAGTTTTTGGTAGCC+AGG | - | chr6_1:29215792-29215811 | Msa0881660:intron | 40.0% |
| TCGCAGATCGCAAAAAATAG+TGG | + | chr6_1:29216121-29216140 | None:intergenic | 40.0% | |
| CTTATTCCAAAACGATTCCC+CGG | - | chr6_1:29216375-29216394 | Msa0881660:intron | 40.0% | |
| ACTCTAGCTAGTAATGTTGC+CGG | + | chr6_1:29216397-29216416 | None:intergenic | 40.0% | |
| GCTAGCATACTTTGACCAAT+AGG | + | chr6_1:29216436-29216455 | None:intergenic | 40.0% | |
| GGTCAAAGTATGCTAGCAAA+AGG | - | chr6_1:29216439-29216458 | Msa0881660:intron | 40.0% | |
| AAGTATGCTAGCAAAAGGTC+GGG | - | chr6_1:29216444-29216463 | Msa0881660:intron | 40.0% | |
| TTGATATGCAGGAAAGCAAC+AGG | - | chr6_1:29216934-29216953 | Msa0881660:CDS | 40.0% | |
| TGCCTCAAAGATGTCTTCTT+TGG | + | chr6_1:29216975-29216994 | None:intergenic | 40.0% | |
| ! | TTTGAGGCATAGATTACCGA+TGG | - | chr6_1:29216986-29217005 | Msa0881660:CDS | 40.0% |
| TTGAGGCATAGATTACCGAT+GGG | - | chr6_1:29216987-29217006 | Msa0881660:CDS | 40.0% | |
| ! | TCGTAAGGGTATGATAACCA+GGG | + | chr6_1:29217098-29217117 | None:intergenic | 40.0% |
| ! | TTCGTAAGGGTATGATAACC+AGG | + | chr6_1:29217099-29217118 | None:intergenic | 40.0% |
| !! | CAAGATGATATCGGTTCGTA+AGG | + | chr6_1:29217113-29217132 | None:intergenic | 40.0% |
| TAAAAGCTACAGCCGATGTG+AGG | - | chr6_1:29215355-29215374 | Msa0881660:CDS | 45.0% | |
| CAATGACCTTCACCTCACAT+CGG | + | chr6_1:29215370-29215389 | None:intergenic | 45.0% | |
| GAGGTGAAGGTCATTGATCT+TGG | - | chr6_1:29215374-29215393 | Msa0881660:CDS | 45.0% | |
| GAAATCCCGAGAATATCCTC+GGG | + | chr6_1:29215461-29215480 | None:intergenic | 45.0% | |
| GTTCTGCCAAGATGTATCCA+AGG | + | chr6_1:29215511-29215530 | None:intergenic | 45.0% | |
| CAGGGGGAAAACATGAATCA+AGG | + | chr6_1:29215697-29215716 | None:intergenic | 45.0% | |
| ! | TTCATGTTTTCCCCCTGTGA+TGG | - | chr6_1:29215700-29215719 | Msa0881660:intron | 45.0% |
| TGGCATACAATGCCATCACA+GGG | + | chr6_1:29215715-29215734 | None:intergenic | 45.0% | |
| TTGGCATACAATGCCATCAC+AGG | + | chr6_1:29215716-29215735 | None:intergenic | 45.0% | |
| ! | GGTAGTGTTTGGAACACGAA+TGG | + | chr6_1:29215930-29215949 | None:intergenic | 45.0% |
| TCTAGCTAGTAATGTTGCCG+GGG | + | chr6_1:29216395-29216414 | None:intergenic | 45.0% | |
| CTCTAGCTAGTAATGTTGCC+GGG | + | chr6_1:29216396-29216415 | None:intergenic | 45.0% | |
| ! | GCTAGAGTAATGGGGATCAT+CGG | - | chr6_1:29216409-29216428 | Msa0881660:intron | 45.0% |
| TGAGGCATAGATTACCGATG+GGG | - | chr6_1:29216988-29217007 | Msa0881660:CDS | 45.0% | |
| CAACGAAGTCAATGAAGCCT+TGG | + | chr6_1:29217016-29217035 | None:intergenic | 45.0% | |
| CTTCGTTGCTCATTTGCTTG+AGG | - | chr6_1:29217028-29217047 | Msa0881660:CDS | 45.0% | |
| ATGCAGAAAGTCGCTTCTTC+GGG | + | chr6_1:29217058-29217077 | None:intergenic | 45.0% | |
| GATGCAGAAAGTCGCTTCTT+CGG | + | chr6_1:29217059-29217078 | None:intergenic | 45.0% | |
| ! | CGTAAGGGTATGATAACCAG+GGG | + | chr6_1:29217097-29217116 | None:intergenic | 45.0% |
| TAAAAGCTACAGCCGATGTG+AGG | - | chr6_1:29215355-29215374 | Msa0881660:CDS | 45.0% | |
| CAATGACCTTCACCTCACAT+CGG | + | chr6_1:29215370-29215389 | None:intergenic | 45.0% | |
| GAGGTGAAGGTCATTGATCT+TGG | - | chr6_1:29215374-29215393 | Msa0881660:CDS | 45.0% | |
| GAAATCCCGAGAATATCCTC+GGG | + | chr6_1:29215461-29215480 | None:intergenic | 45.0% | |
| GTTCTGCCAAGATGTATCCA+AGG | + | chr6_1:29215511-29215530 | None:intergenic | 45.0% | |
| CAGGGGGAAAACATGAATCA+AGG | + | chr6_1:29215697-29215716 | None:intergenic | 45.0% | |
| ! | TTCATGTTTTCCCCCTGTGA+TGG | - | chr6_1:29215700-29215719 | Msa0881660:intron | 45.0% |
| TGGCATACAATGCCATCACA+GGG | + | chr6_1:29215715-29215734 | None:intergenic | 45.0% | |
| TTGGCATACAATGCCATCAC+AGG | + | chr6_1:29215716-29215735 | None:intergenic | 45.0% | |
| ! | GGTAGTGTTTGGAACACGAA+TGG | + | chr6_1:29215930-29215949 | None:intergenic | 45.0% |
| TCTAGCTAGTAATGTTGCCG+GGG | + | chr6_1:29216395-29216414 | None:intergenic | 45.0% | |
| CTCTAGCTAGTAATGTTGCC+GGG | + | chr6_1:29216396-29216415 | None:intergenic | 45.0% | |
| ! | GCTAGAGTAATGGGGATCAT+CGG | - | chr6_1:29216409-29216428 | Msa0881660:intron | 45.0% |
| TGAGGCATAGATTACCGATG+GGG | - | chr6_1:29216988-29217007 | Msa0881660:CDS | 45.0% | |
| CAACGAAGTCAATGAAGCCT+TGG | + | chr6_1:29217016-29217035 | None:intergenic | 45.0% | |
| CTTCGTTGCTCATTTGCTTG+AGG | - | chr6_1:29217028-29217047 | Msa0881660:CDS | 45.0% | |
| ATGCAGAAAGTCGCTTCTTC+GGG | + | chr6_1:29217058-29217077 | None:intergenic | 45.0% | |
| GATGCAGAAAGTCGCTTCTT+CGG | + | chr6_1:29217059-29217078 | None:intergenic | 45.0% | |
| ! | CGTAAGGGTATGATAACCAG+GGG | + | chr6_1:29217097-29217116 | None:intergenic | 45.0% |
| ! | AATATCCTCGGGAGCACGAT+AGG | + | chr6_1:29215450-29215469 | None:intergenic | 50.0% |
| CTGGTCCCTTGGATACATCT+TGG | - | chr6_1:29215502-29215521 | Msa0881660:CDS | 50.0% | |
| GCATACAATGCCATCACAGG+GGG | + | chr6_1:29215713-29215732 | None:intergenic | 50.0% | |
| GGCATACAATGCCATCACAG+GGG | + | chr6_1:29215714-29215733 | None:intergenic | 50.0% | |
| GCACTGCTGTGTAGCAGAAT+CGG | - | chr6_1:29216089-29216108 | Msa0881660:intron | 50.0% | |
| ! | ATGTTGCCGGGGAATCGTTT+TGG | + | chr6_1:29216384-29216403 | None:intergenic | 50.0% |
| ATGGGGATCATCGGTCCTAT+TGG | - | chr6_1:29216418-29216437 | Msa0881660:intron | 50.0% | |
| GAGGCATAGATTACCGATGG+GGG | - | chr6_1:29216989-29217008 | Msa0881660:CDS | 50.0% | |
| ! | AATATCCTCGGGAGCACGAT+AGG | + | chr6_1:29215450-29215469 | None:intergenic | 50.0% |
| CTGGTCCCTTGGATACATCT+TGG | - | chr6_1:29215502-29215521 | Msa0881660:CDS | 50.0% | |
| GCATACAATGCCATCACAGG+GGG | + | chr6_1:29215713-29215732 | None:intergenic | 50.0% | |
| GGCATACAATGCCATCACAG+GGG | + | chr6_1:29215714-29215733 | None:intergenic | 50.0% | |
| GCACTGCTGTGTAGCAGAAT+CGG | - | chr6_1:29216089-29216108 | Msa0881660:intron | 50.0% | |
| ! | ATGTTGCCGGGGAATCGTTT+TGG | + | chr6_1:29216384-29216403 | None:intergenic | 50.0% |
| ATGGGGATCATCGGTCCTAT+TGG | - | chr6_1:29216418-29216437 | Msa0881660:intron | 50.0% | |
| GAGGCATAGATTACCGATGG+GGG | - | chr6_1:29216989-29217008 | Msa0881660:CDS | 50.0% | |
| CTACAGCCGATGTGAGGTGA+AGG | - | chr6_1:29215361-29215380 | Msa0881660:CDS | 55.0% | |
| CGTGCTCCCGAGGATATTCT+CGG | - | chr6_1:29215452-29215471 | Msa0881660:CDS | 55.0% | |
| GTGCTCCCGAGGATATTCTC+GGG | - | chr6_1:29215453-29215472 | Msa0881660:CDS | 55.0% | |
| AGATTACCGATGGGGGACCA+AGG | - | chr6_1:29216996-29217015 | Msa0881660:CDS | 55.0% | |
| ATGAAGCCTTGGTCCCCCAT+CGG | + | chr6_1:29217005-29217024 | None:intergenic | 55.0% | |
| !! | CTGAAGCTCTAAAGCACCCC+TGG | - | chr6_1:29217078-29217097 | Msa0881660:CDS | 55.0% |
| CTACAGCCGATGTGAGGTGA+AGG | - | chr6_1:29215361-29215380 | Msa0881660:CDS | 55.0% | |
| CGTGCTCCCGAGGATATTCT+CGG | - | chr6_1:29215452-29215471 | Msa0881660:CDS | 55.0% | |
| GTGCTCCCGAGGATATTCTC+GGG | - | chr6_1:29215453-29215472 | Msa0881660:CDS | 55.0% | |
| AGATTACCGATGGGGGACCA+AGG | - | chr6_1:29216996-29217015 | Msa0881660:CDS | 55.0% | |
| ATGAAGCCTTGGTCCCCCAT+CGG | + | chr6_1:29217005-29217024 | None:intergenic | 55.0% | |
| !! | CTGAAGCTCTAAAGCACCCC+TGG | - | chr6_1:29217078-29217097 | Msa0881660:CDS | 55.0% |
| ! | CTCGGGAGCACGATAGGACC+TGG | + | chr6_1:29215444-29215463 | None:intergenic | 65.0% |
| CAGGTCCTATCGTGCTCCCG+AGG | - | chr6_1:29215442-29215461 | Msa0881660:CDS | 65.0% | |
| ! | CTCGGGAGCACGATAGGACC+TGG | + | chr6_1:29215444-29215463 | None:intergenic | 65.0% |
| CAGGTCCTATCGTGCTCCCG+AGG | - | chr6_1:29215442-29215461 | Msa0881660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 29215338 | 29217133 | 29215338 | ID=Msa0881660;Name=Msa0881660 |
| chr6_1 | mRNA | 29215338 | 29217133 | 29215338 | ID=Msa0881660-mRNA-1;Parent=Msa0881660;Name=Msa0881660-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.33|0|1|1|1|4|0|179 |
| chr6_1 | exon | 29216934 | 29217133 | 29216934 | ID=Msa0881660-mRNA-1:exon:7417;Parent=Msa0881660-mRNA-1 |
| chr6_1 | exon | 29216202 | 29216208 | 29216202 | ID=Msa0881660-mRNA-1:exon:7416;Parent=Msa0881660-mRNA-1 |
| chr6_1 | exon | 29215955 | 29216098 | 29215955 | ID=Msa0881660-mRNA-1:exon:7415;Parent=Msa0881660-mRNA-1 |
| chr6_1 | exon | 29215338 | 29215526 | 29215338 | ID=Msa0881660-mRNA-1:exon:7414;Parent=Msa0881660-mRNA-1 |
| chr6_1 | CDS | 29216934 | 29217133 | 29216934 | ID=Msa0881660-mRNA-1:cds;Parent=Msa0881660-mRNA-1 |
| chr6_1 | CDS | 29216202 | 29216208 | 29216202 | ID=Msa0881660-mRNA-1:cds;Parent=Msa0881660-mRNA-1 |
| chr6_1 | CDS | 29215955 | 29216098 | 29215955 | ID=Msa0881660-mRNA-1:cds;Parent=Msa0881660-mRNA-1 |
| chr6_1 | CDS | 29215338 | 29215526 | 29215338 | ID=Msa0881660-mRNA-1:cds;Parent=Msa0881660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
