Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881770 | AES95291.1 | 92.241 | 232 | 13 | 2 | 1 | 227 | 1 | 232 | 1.98e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881770 | G7K024 | 92.241 | 232 | 13 | 2 | 1 | 227 | 1 | 232 | 9.44e-143 | 409 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0881770 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881770 | MtrunA17_Chr5g0406791 | 93.827 | 162 | 9 | 1 | 1 | 161 | 1 | 162 | 4.15e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881770 | AT4G35700.1 | 31.746 | 189 | 98 | 8 | 75 | 243 | 98 | 275 | 9.90e-18 | 80.5 |
| Msa0881770 | AT4G35610.1 | 54.000 | 50 | 23 | 0 | 106 | 155 | 129 | 178 | 2.07e-13 | 68.6 |
Find 94 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCATCATCCTCTTC+TGG | 0.204274 | 6_1:+29928574 | None:intergenic |
| GTGGCTGGTGTGGTGTTGTT+TGG | 0.232681 | 6_1:+29929956 | None:intergenic |
| GCATCCAGAGCGTGCTCATC+GGG | 0.273262 | 6_1:-29929579 | Msa0881770:CDS |
| GCAAACTCCCTCTTGCATTC+TGG | 0.280646 | 6_1:+29929635 | None:intergenic |
| CAGATGAACCGTCGGCAGTT+AGG | 0.305066 | 6_1:+29929747 | None:intergenic |
| TCTTGCATTCTGGACATGTT+GGG | 0.316539 | 6_1:+29929645 | None:intergenic |
| TGGCTGGTGTGGTGTTGTTT+GGG | 0.349412 | 6_1:+29929957 | None:intergenic |
| GCCACATGGAAAGCTGCGTT+TGG | 0.354309 | 6_1:-29929614 | Msa0881770:CDS |
| CTCTTGCATTCTGGACATGT+TGG | 0.358689 | 6_1:+29929644 | None:intergenic |
| GTTGTTTGGGCTTGACTCAT+TGG | 0.370557 | 6_1:+29929970 | None:intergenic |
| TACCTTCATCACCACCATTT+GGG | 0.373337 | 6_1:+29929810 | None:intergenic |
| AGATGAACCGTCGGCAGTTA+GGG | 0.382592 | 6_1:+29929748 | None:intergenic |
| TTCGCAGCCGGTGCAGGTGC+AGG | 0.386846 | 6_1:+29928643 | None:intergenic |
| CTGATGGAGGGTCTTTCACT+TGG | 0.398758 | 6_1:+29929672 | None:intergenic |
| CCACATGGAAAGCTGCGTTT+GGG | 0.399070 | 6_1:-29929613 | Msa0881770:CDS |
| TCTTCATTCGCAGCCGGTGC+AGG | 0.409609 | 6_1:+29928637 | None:intergenic |
| TTACCTTCATCACCACCATT+TGG | 0.411718 | 6_1:+29929809 | None:intergenic |
| CAGAGGACCCTGCGGTTGAT+TGG | 0.413835 | 6_1:+29928707 | None:intergenic |
| TTTGGGCTTGACTCATTGGC+AGG | 0.414848 | 6_1:+29929974 | None:intergenic |
| GGGTCCTCTGCAGGTGGTAG+TGG | 0.433493 | 6_1:-29928694 | Msa0881770:CDS |
| GACCATCAGAACCAACTTGT+TGG | 0.436035 | 6_1:+29929720 | None:intergenic |
| GTGCAGGTGCAGGTGCTGCT+TGG | 0.440372 | 6_1:+29928653 | None:intergenic |
| ATCATCATCATCAGTTAGTT+CGG | 0.443434 | 6_1:+29929838 | None:intergenic |
| TCCTCAGTGTTTGTCACAGC+GGG | 0.444401 | 6_1:+29929896 | None:intergenic |
| TCATCATCCTCTTCTGGAGG+TGG | 0.459723 | 6_1:+29928580 | None:intergenic |
| ATGGTCATGTCTTCAAGAAA+AGG | 0.461097 | 6_1:-29929703 | Msa0881770:CDS |
| GTTCAGCCAAGGTGCGTTGA+GGG | 0.469269 | 6_1:+29929930 | None:intergenic |
| TTGTTTACAGGTGATGGTCT+TGG | 0.469520 | 6_1:-29928796 | Msa0881770:intron |
| ATCCAACAAGTTGGTTCTGA+TGG | 0.472826 | 6_1:-29929722 | Msa0881770:CDS |
| GAAAACACCGGAGGAAGTCC+TGG | 0.473695 | 6_1:-29929861 | Msa0881770:CDS |
| CAAGGTGCGTTGAGGGGAAG+TGG | 0.482830 | 6_1:+29929937 | None:intergenic |
| TATATACCCTCAGCAGGAAC+GGG | 0.491670 | 6_1:+29929521 | None:intergenic |
| TCAACCGCAGGGTCCTCTGC+AGG | 0.492863 | 6_1:-29928703 | Msa0881770:CDS |
| CGTCTTTCTTCATTCGCAGC+CGG | 0.495573 | 6_1:+29928631 | None:intergenic |
| GAATGAAGAAAGACGGAGAC+GGG | 0.497570 | 6_1:-29928623 | Msa0881770:CDS |
| CACTTCCCCTCAACGCACCT+TGG | 0.498843 | 6_1:-29929936 | Msa0881770:CDS |
| CATGTTGGGGATCCTGATGG+AGG | 0.503638 | 6_1:+29929659 | None:intergenic |
| GGACATGTTGGGGATCCTGA+TGG | 0.504468 | 6_1:+29929656 | None:intergenic |
| CTTGCATTCTGGACATGTTG+GGG | 0.506162 | 6_1:+29929646 | None:intergenic |
| CAAGTGAAAGACCCTCCATC+AGG | 0.513855 | 6_1:-29929671 | Msa0881770:CDS |
| GTGCGTTGAGGGGAAGTGGC+TGG | 0.516360 | 6_1:+29929941 | None:intergenic |
| CTTGGCGACAAGATCAATGA+AGG | 0.517419 | 6_1:-29928778 | Msa0881770:CDS |
| AGCATCCAGAGCGTGCTCAT+CGG | 0.517955 | 6_1:-29929580 | Msa0881770:CDS |
| AGCAGCACCTGCACCTGCAC+CGG | 0.523537 | 6_1:-29928650 | Msa0881770:CDS |
| CGTTGCACCCGTTCCTGCTG+AGG | 0.526903 | 6_1:-29929528 | Msa0881770:CDS |
| GTAATATATATACCCTCAGC+AGG | 0.531989 | 6_1:+29929515 | None:intergenic |
| GATGATGATTTGATCCCAAA+TGG | 0.535324 | 6_1:-29929824 | Msa0881770:CDS |
| TCATCTGTTATCCAACAAGT+TGG | 0.537358 | 6_1:-29929731 | Msa0881770:CDS |
| GTTTCATCATCCTCTTCTGG+AGG | 0.539642 | 6_1:+29928577 | None:intergenic |
| CATCATCAGTTAGTTCGGCC+AGG | 0.545384 | 6_1:+29929843 | None:intergenic |
| ATGTTGGGGATCCTGATGGA+GGG | 0.546248 | 6_1:+29929660 | None:intergenic |
| ATATATACCCTCAGCAGGAA+CGG | 0.548442 | 6_1:+29929520 | None:intergenic |
| AGTTCGGCCAGGACTTCCTC+CGG | 0.548973 | 6_1:+29929854 | None:intergenic |
| ATCCCAAATGGTGGTGATGA+AGG | 0.554230 | 6_1:-29929812 | Msa0881770:CDS |
| TTGAGGGGAAGTGGCTGGTG+TGG | 0.560312 | 6_1:+29929946 | None:intergenic |
| AGATCGATCCAATCAACCGC+AGG | 0.563542 | 6_1:-29928715 | Msa0881770:CDS |
| CGAGTTGCCACCTCCAGAAG+AGG | 0.565350 | 6_1:-29928587 | Msa0881770:CDS |
| GGTGCAACGGTGCTAAAAGT+TGG | 0.571929 | 6_1:+29929542 | None:intergenic |
| AAGGTAACGAAGAAGACGAT+GGG | 0.573776 | 6_1:-29929793 | Msa0881770:CDS |
| CTCAGCAGGAACGGGTGCAA+CGG | 0.574361 | 6_1:+29929529 | None:intergenic |
| GTTGCACCCGTTCCTGCTGA+GGG | 0.581395 | 6_1:-29929527 | Msa0881770:intron |
| TCAGTGTTTGTCACAGCGGG+TGG | 0.591498 | 6_1:+29929899 | None:intergenic |
| GCAACGGTGCTAAAAGTTGG+TGG | 0.591524 | 6_1:+29929545 | None:intergenic |
| CATGTCTTCAAGAAAAGGAA+AGG | 0.594271 | 6_1:-29929698 | Msa0881770:CDS |
| ATCCAGAGCGTGCTCATCGG+GGG | 0.598304 | 6_1:-29929577 | Msa0881770:CDS |
| ACGGTGCTAAAAGTTGGTGG+AGG | 0.599469 | 6_1:+29929548 | None:intergenic |
| TTCAGCCAAGGTGCGTTGAG+GGG | 0.602294 | 6_1:+29929931 | None:intergenic |
| TTGGGCTTGACTCATTGGCA+GGG | 0.602976 | 6_1:+29929975 | None:intergenic |
| TGTTCAGCCAAGGTGCGTTG+AGG | 0.606127 | 6_1:+29929929 | None:intergenic |
| TGGTAGTGGTCATATCACTA+AGG | 0.608602 | 6_1:-29928680 | Msa0881770:CDS |
| CAACATGTCCAGAATGCAAG+AGG | 0.611183 | 6_1:-29929643 | Msa0881770:CDS |
| TGGCTGATCATGTTCAGCCA+AGG | 0.612094 | 6_1:+29929919 | None:intergenic |
| ACCGCAGGGTCCTCTGCAGG+TGG | 0.618162 | 6_1:-29928700 | Msa0881770:CDS |
| TGAAACCTCTCTGAAAACAC+CGG | 0.622863 | 6_1:-29929873 | Msa0881770:CDS |
| TTGGCGACAAGATCAATGAA+GGG | 0.623712 | 6_1:-29928777 | Msa0881770:CDS |
| ATCCTCAGTGTTTGTCACAG+CGG | 0.628423 | 6_1:+29929895 | None:intergenic |
| CGGCTGCGAATGAAGAAAGA+CGG | 0.631768 | 6_1:-29928630 | Msa0881770:CDS |
| CGGTGCTAAAAGTTGGTGGA+GGG | 0.635586 | 6_1:+29929549 | None:intergenic |
| GAAGGTAACGAAGAAGACGA+TGG | 0.639373 | 6_1:-29929794 | Msa0881770:CDS |
| GCAAGAGGGAGTTTGCCACA+TGG | 0.640414 | 6_1:-29929628 | Msa0881770:CDS |
| TTGGATAACAGATGAACCGT+CGG | 0.650442 | 6_1:+29929739 | None:intergenic |
| CGAATGAAGAAAGACGGAGA+CGG | 0.650910 | 6_1:-29928624 | Msa0881770:CDS |
| CATCCAGAGCGTGCTCATCG+GGG | 0.656726 | 6_1:-29929578 | Msa0881770:CDS |
| GATCGATCCAATCAACCGCA+GGG | 0.660372 | 6_1:-29928714 | Msa0881770:CDS |
| ATGACCACTACCACCTGCAG+AGG | 0.660468 | 6_1:+29928690 | None:intergenic |
| TGGCGACAAGATCAATGAAG+GGG | 0.669025 | 6_1:-29928776 | Msa0881770:CDS |
| GTTATCGCCCTAACTGCCGA+CGG | 0.669691 | 6_1:-29929755 | Msa0881770:CDS |
| CCCAAACGCAGCTTTCCATG+TGG | 0.686185 | 6_1:+29929613 | None:intergenic |
| AACATGTCCAGAATGCAAGA+GGG | 0.691308 | 6_1:-29929642 | Msa0881770:CDS |
| ACCACCTGCAGAGGACCCTG+CGG | 0.702134 | 6_1:+29928699 | None:intergenic |
| AACCTCTCTGAAAACACCGG+AGG | 0.709220 | 6_1:-29929870 | Msa0881770:CDS |
| GATGATTTGATCCCAAATGG+TGG | 0.741325 | 6_1:-29929821 | Msa0881770:CDS |
| AGGTAACGAAGAAGACGATG+GGG | 0.743243 | 6_1:-29929792 | Msa0881770:CDS |
| ACCCGCTGTGACAAACACTG+AGG | 0.799006 | 6_1:-29929897 | Msa0881770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTATATATATAGTTA+GGG | + | chr6_1:29929056-29929075 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | + | chr6_1:29929057-29929076 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | + | chr6_1:29929205-29929224 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | + | chr6_1:29929236-29929255 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | - | chr6_1:29929598-29929617 | Msa0881770:CDS | 15.0% |
| !! | TAAGACTATATATATAGTTA+GGG | + | chr6_1:29929056-29929075 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | + | chr6_1:29929057-29929076 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | + | chr6_1:29929205-29929224 | None:intergenic | 15.0% |
| !!! | AAAACATTTCAATTATCTTT+TGG | + | chr6_1:29929236-29929255 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | - | chr6_1:29929598-29929617 | Msa0881770:CDS | 15.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | - | chr6_1:29929101-29929120 | Msa0881770:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | + | chr6_1:29929448-29929467 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | + | chr6_1:29929587-29929606 | None:intergenic | 20.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | - | chr6_1:29929101-29929120 | Msa0881770:intron | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | + | chr6_1:29929448-29929467 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | + | chr6_1:29929587-29929606 | None:intergenic | 20.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | - | chr6_1:29929175-29929194 | Msa0881770:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | + | chr6_1:29929233-29929252 | None:intergenic | 25.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | - | chr6_1:29929175-29929194 | Msa0881770:intron | 25.0% |
| !! | ACATTTCAATTATCTTTTGG+TGG | + | chr6_1:29929233-29929252 | None:intergenic | 25.0% |
| ATCATCATCATCAGTTAGTT+CGG | + | chr6_1:29928706-29928725 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | + | chr6_1:29929710-29929729 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | - | chr6_1:29929733-29929752 | Msa0881770:CDS | 30.0% | |
| ATCATCATCATCAGTTAGTT+CGG | + | chr6_1:29928706-29928725 | None:intergenic | 30.0% | |
| ATAAAGCACACACTCATATA+AGG | + | chr6_1:29929710-29929729 | None:intergenic | 30.0% | |
| TTACGTCGTTAATTGTTTAC+AGG | - | chr6_1:29929733-29929752 | Msa0881770:CDS | 30.0% | |
| GATGATGATTTGATCCCAAA+TGG | - | chr6_1:29928717-29928736 | Msa0881770:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | - | chr6_1:29928810-29928829 | Msa0881770:intron | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | - | chr6_1:29928838-29928857 | Msa0881770:intron | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | - | chr6_1:29928843-29928862 | Msa0881770:intron | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | + | chr6_1:29929029-29929048 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | - | chr6_1:29929739-29929758 | Msa0881770:CDS | 35.0% | |
| GATGATGATTTGATCCCAAA+TGG | - | chr6_1:29928717-29928736 | Msa0881770:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | - | chr6_1:29928810-29928829 | Msa0881770:intron | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | - | chr6_1:29928838-29928857 | Msa0881770:intron | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | - | chr6_1:29928843-29928862 | Msa0881770:intron | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | + | chr6_1:29929029-29929048 | None:intergenic | 35.0% | |
| CGTTAATTGTTTACAGGTGA+TGG | - | chr6_1:29929739-29929758 | Msa0881770:CDS | 35.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | - | chr6_1:29928668-29928687 | Msa0881770:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | - | chr6_1:29928720-29928739 | Msa0881770:CDS | 40.0% | |
| TACCTTCATCACCACCATTT+GGG | + | chr6_1:29928734-29928753 | None:intergenic | 40.0% | |
| TTACCTTCATCACCACCATT+TGG | + | chr6_1:29928735-29928754 | None:intergenic | 40.0% | |
| AAGGTAACGAAGAAGACGAT+GGG | - | chr6_1:29928748-29928767 | Msa0881770:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | + | chr6_1:29928805-29928824 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | - | chr6_1:29928819-29928838 | Msa0881770:intron | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | + | chr6_1:29928899-29928918 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | - | chr6_1:29928899-29928918 | Msa0881770:intron | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | + | chr6_1:29929024-29929043 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | - | chr6_1:29929745-29929764 | Msa0881770:CDS | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | - | chr6_1:29929764-29929783 | Msa0881770:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | - | chr6_1:29929861-29929880 | Msa0881770:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | + | chr6_1:29929970-29929989 | None:intergenic | 40.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | - | chr6_1:29928668-29928687 | Msa0881770:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | - | chr6_1:29928720-29928739 | Msa0881770:CDS | 40.0% | |
| TACCTTCATCACCACCATTT+GGG | + | chr6_1:29928734-29928753 | None:intergenic | 40.0% | |
| TTACCTTCATCACCACCATT+TGG | + | chr6_1:29928735-29928754 | None:intergenic | 40.0% | |
| AAGGTAACGAAGAAGACGAT+GGG | - | chr6_1:29928748-29928767 | Msa0881770:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | + | chr6_1:29928805-29928824 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | - | chr6_1:29928819-29928838 | Msa0881770:intron | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | + | chr6_1:29928899-29928918 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | - | chr6_1:29928899-29928918 | Msa0881770:intron | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | + | chr6_1:29929024-29929043 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | - | chr6_1:29929745-29929764 | Msa0881770:CDS | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | - | chr6_1:29929764-29929783 | Msa0881770:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | - | chr6_1:29929861-29929880 | Msa0881770:CDS | 40.0% |
| TCTGTTTCATCATCCTCTTC+TGG | + | chr6_1:29929970-29929989 | None:intergenic | 40.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | + | chr6_1:29928574-29928593 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | + | chr6_1:29928649-29928668 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+AGG | - | chr6_1:29928729-29928748 | Msa0881770:CDS | 45.0% |
| GAAGGTAACGAAGAAGACGA+TGG | - | chr6_1:29928747-29928766 | Msa0881770:CDS | 45.0% | |
| AGGTAACGAAGAAGACGATG+GGG | - | chr6_1:29928749-29928768 | Msa0881770:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | - | chr6_1:29928757-29928776 | Msa0881770:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | + | chr6_1:29928824-29928843 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | + | chr6_1:29928898-29928917 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | + | chr6_1:29928900-29928919 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | - | chr6_1:29928898-29928917 | Msa0881770:intron | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | + | chr6_1:29929023-29929042 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | - | chr6_1:29929763-29929782 | Msa0881770:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | - | chr6_1:29929765-29929784 | Msa0881770:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | - | chr6_1:29929917-29929936 | Msa0881770:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | - | chr6_1:29929918-29929937 | Msa0881770:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | + | chr6_1:29929967-29929986 | None:intergenic | 45.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | + | chr6_1:29928574-29928593 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | + | chr6_1:29928649-29928668 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+AGG | - | chr6_1:29928729-29928748 | Msa0881770:CDS | 45.0% |
| GAAGGTAACGAAGAAGACGA+TGG | - | chr6_1:29928747-29928766 | Msa0881770:CDS | 45.0% | |
| AGGTAACGAAGAAGACGATG+GGG | - | chr6_1:29928749-29928768 | Msa0881770:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | - | chr6_1:29928757-29928776 | Msa0881770:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | + | chr6_1:29928824-29928843 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | + | chr6_1:29928898-29928917 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | + | chr6_1:29928900-29928919 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | - | chr6_1:29928898-29928917 | Msa0881770:intron | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | + | chr6_1:29929023-29929042 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | - | chr6_1:29929763-29929782 | Msa0881770:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | - | chr6_1:29929765-29929784 | Msa0881770:CDS | 45.0% | |
| CGAATGAAGAAAGACGGAGA+CGG | - | chr6_1:29929917-29929936 | Msa0881770:CDS | 45.0% | |
| GAATGAAGAAAGACGGAGAC+GGG | - | chr6_1:29929918-29929937 | Msa0881770:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | + | chr6_1:29929967-29929986 | None:intergenic | 45.0% | |
| !! | AAAAAATCTAAAAATTATTT+AGG | - | chr6_1:29929311-29929330 | Msa0881770:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | - | chr6_1:29929312-29929331 | Msa0881770:intron | 5.0% |
| !! | AAAAAATCTAAAAATTATTT+AGG | - | chr6_1:29929311-29929330 | Msa0881770:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | - | chr6_1:29929312-29929331 | Msa0881770:intron | 5.0% |
| TTGGGCTTGACTCATTGGCA+GGG | + | chr6_1:29928569-29928588 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | + | chr6_1:29928570-29928589 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | + | chr6_1:29928587-29928606 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | + | chr6_1:29928625-29928644 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | + | chr6_1:29928648-29928667 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | - | chr6_1:29928671-29928690 | Msa0881770:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | + | chr6_1:29928676-29928695 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | + | chr6_1:29928701-29928720 | None:intergenic | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | + | chr6_1:29928796-29928815 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | + | chr6_1:29928872-29928891 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | - | chr6_1:29928870-29928889 | Msa0881770:intron | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | + | chr6_1:29928884-29928903 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | + | chr6_1:29928909-29928928 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | - | chr6_1:29928928-29928947 | Msa0881770:intron | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | + | chr6_1:29928995-29929014 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | + | chr6_1:29928996-29929015 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | + | chr6_1:29928999-29929018 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | + | chr6_1:29929002-29929021 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | - | chr6_1:29929826-29929845 | Msa0881770:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | - | chr6_1:29929827-29929846 | Msa0881770:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | + | chr6_1:29929913-29929932 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | - | chr6_1:29929911-29929930 | Msa0881770:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | + | chr6_1:29929964-29929983 | None:intergenic | 50.0% |
| TTGGGCTTGACTCATTGGCA+GGG | + | chr6_1:29928569-29928588 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | + | chr6_1:29928570-29928589 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | + | chr6_1:29928587-29928606 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | + | chr6_1:29928625-29928644 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | + | chr6_1:29928648-29928667 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | - | chr6_1:29928671-29928690 | Msa0881770:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | + | chr6_1:29928676-29928695 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | + | chr6_1:29928701-29928720 | None:intergenic | 50.0% | |
| AGATGAACCGTCGGCAGTTA+GGG | + | chr6_1:29928796-29928815 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | + | chr6_1:29928872-29928891 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | - | chr6_1:29928870-29928889 | Msa0881770:intron | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | + | chr6_1:29928884-29928903 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | + | chr6_1:29928909-29928928 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | - | chr6_1:29928928-29928947 | Msa0881770:intron | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | + | chr6_1:29928995-29929014 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | + | chr6_1:29928996-29929015 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | + | chr6_1:29928999-29929018 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | + | chr6_1:29929002-29929021 | None:intergenic | 50.0% |
| AGATCGATCCAATCAACCGC+AGG | - | chr6_1:29929826-29929845 | Msa0881770:CDS | 50.0% | |
| GATCGATCCAATCAACCGCA+GGG | - | chr6_1:29929827-29929846 | Msa0881770:CDS | 50.0% | |
| CGTCTTTCTTCATTCGCAGC+CGG | + | chr6_1:29929913-29929932 | None:intergenic | 50.0% | |
| CGGCTGCGAATGAAGAAAGA+CGG | - | chr6_1:29929911-29929930 | Msa0881770:CDS | 50.0% | |
| ! | TCATCATCCTCTTCTGGAGG+TGG | + | chr6_1:29929964-29929983 | None:intergenic | 50.0% |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | + | chr6_1:29928588-29928607 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | + | chr6_1:29928613-29928632 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | + | chr6_1:29928614-29928633 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | + | chr6_1:29928615-29928634 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | + | chr6_1:29928645-29928664 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | - | chr6_1:29928644-29928663 | Msa0881770:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | - | chr6_1:29928680-29928699 | Msa0881770:CDS | 55.0% | |
| !!! | CGATGGGGCTTTTAGGACGA+TGG | - | chr6_1:29928764-29928783 | Msa0881770:CDS | 55.0% |
| GTTATCGCCCTAACTGCCGA+CGG | - | chr6_1:29928786-29928805 | Msa0881770:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | + | chr6_1:29928797-29928816 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | + | chr6_1:29928885-29928904 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | + | chr6_1:29928888-29928907 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | - | chr6_1:29928913-29928932 | Msa0881770:intron | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | - | chr6_1:29928927-29928946 | Msa0881770:intron | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | + | chr6_1:29928931-29928950 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | - | chr6_1:29928961-29928980 | Msa0881770:intron | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | + | chr6_1:29929854-29929873 | None:intergenic | 55.0% | |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | + | chr6_1:29928588-29928607 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | + | chr6_1:29928613-29928632 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | + | chr6_1:29928614-29928633 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | + | chr6_1:29928615-29928634 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | + | chr6_1:29928645-29928664 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | - | chr6_1:29928644-29928663 | Msa0881770:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | - | chr6_1:29928680-29928699 | Msa0881770:CDS | 55.0% | |
| !!! | CGATGGGGCTTTTAGGACGA+TGG | - | chr6_1:29928764-29928783 | Msa0881770:CDS | 55.0% |
| GTTATCGCCCTAACTGCCGA+CGG | - | chr6_1:29928786-29928805 | Msa0881770:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | + | chr6_1:29928797-29928816 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | + | chr6_1:29928885-29928904 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | + | chr6_1:29928888-29928907 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | - | chr6_1:29928913-29928932 | Msa0881770:intron | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | - | chr6_1:29928927-29928946 | Msa0881770:intron | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | + | chr6_1:29928931-29928950 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | - | chr6_1:29928961-29928980 | Msa0881770:intron | 55.0% | |
| ATGACCACTACCACCTGCAG+AGG | + | chr6_1:29929854-29929873 | None:intergenic | 55.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | + | chr6_1:29928598-29928617 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | + | chr6_1:29928607-29928626 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | - | chr6_1:29928605-29928624 | Msa0881770:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | + | chr6_1:29928690-29928709 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | - | chr6_1:29928962-29928981 | Msa0881770:intron | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | - | chr6_1:29928963-29928982 | Msa0881770:intron | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | - | chr6_1:29928964-29928983 | Msa0881770:intron | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | + | chr6_1:29929015-29929034 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | - | chr6_1:29929014-29929033 | Msa0881770:intron | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | + | chr6_1:29929837-29929856 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | + | chr6_1:29929907-29929926 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | - | chr6_1:29929954-29929973 | Msa0881770:CDS | 60.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | + | chr6_1:29928598-29928617 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | + | chr6_1:29928607-29928626 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | - | chr6_1:29928605-29928624 | Msa0881770:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | + | chr6_1:29928690-29928709 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | - | chr6_1:29928962-29928981 | Msa0881770:intron | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | - | chr6_1:29928963-29928982 | Msa0881770:intron | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | - | chr6_1:29928964-29928983 | Msa0881770:intron | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | + | chr6_1:29929015-29929034 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | - | chr6_1:29929014-29929033 | Msa0881770:intron | 60.0% | |
| CAGAGGACCCTGCGGTTGAT+TGG | + | chr6_1:29929837-29929856 | None:intergenic | 60.0% | |
| TCTTCATTCGCAGCCGGTGC+AGG | + | chr6_1:29929907-29929926 | None:intergenic | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | - | chr6_1:29929954-29929973 | Msa0881770:CDS | 60.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | + | chr6_1:29928603-29928622 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | + | chr6_1:29928969-29928988 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | - | chr6_1:29929013-29929032 | Msa0881770:intron | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | - | chr6_1:29929838-29929857 | Msa0881770:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | + | chr6_1:29929845-29929864 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | - | chr6_1:29929847-29929866 | Msa0881770:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | + | chr6_1:29929891-29929910 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | - | chr6_1:29929891-29929910 | Msa0881770:CDS | 65.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | + | chr6_1:29928603-29928622 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | + | chr6_1:29928969-29928988 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | - | chr6_1:29929013-29929032 | Msa0881770:intron | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+AGG | - | chr6_1:29929838-29929857 | Msa0881770:CDS | 65.0% | |
| ACCACCTGCAGAGGACCCTG+CGG | + | chr6_1:29929845-29929864 | None:intergenic | 65.0% | |
| GGGTCCTCTGCAGGTGGTAG+TGG | - | chr6_1:29929847-29929866 | Msa0881770:CDS | 65.0% | |
| !! | GTGCAGGTGCAGGTGCTGCT+TGG | + | chr6_1:29929891-29929910 | None:intergenic | 65.0% |
| AGCAGCACCTGCACCTGCAC+CGG | - | chr6_1:29929891-29929910 | Msa0881770:CDS | 65.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | - | chr6_1:29929841-29929860 | Msa0881770:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | + | chr6_1:29929901-29929920 | None:intergenic | 70.0% | |
| ACCGCAGGGTCCTCTGCAGG+TGG | - | chr6_1:29929841-29929860 | Msa0881770:CDS | 70.0% | |
| TTCGCAGCCGGTGCAGGTGC+AGG | + | chr6_1:29929901-29929920 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 29928555 | 29930008 | 29928555 | ID=Msa0881770;Name=Msa0881770 |
| chr6_1 | mRNA | 29928555 | 29930008 | 29928555 | ID=Msa0881770-mRNA-1;Parent=Msa0881770;Name=Msa0881770-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|2|0|244 |
| chr6_1 | exon | 29929528 | 29930008 | 29929528 | ID=Msa0881770-mRNA-1:exon:7468;Parent=Msa0881770-mRNA-1 |
| chr6_1 | exon | 29928555 | 29928808 | 29928555 | ID=Msa0881770-mRNA-1:exon:7467;Parent=Msa0881770-mRNA-1 |
| chr6_1 | CDS | 29929528 | 29930008 | 29929528 | ID=Msa0881770-mRNA-1:cds;Parent=Msa0881770-mRNA-1 |
| chr6_1 | CDS | 29928555 | 29928808 | 29928555 | ID=Msa0881770-mRNA-1:cds;Parent=Msa0881770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
