Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881780 | AES95290.1 | 73.460 | 211 | 26 | 3 | 1 | 201 | 1 | 191 | 1.75e-98 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881780 | G7K023 | 73.460 | 211 | 26 | 3 | 1 | 201 | 1 | 191 | 8.36e-99 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0881780 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881780 | MtrunA17_Chr5g0406781 | 55.975 | 159 | 30 | 4 | 1 | 159 | 1 | 119 | 4.33e-50 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGTTGGGTTGGTTTCTT+TGG | 0.162115 | 6_1:+29937455 | None:intergenic |
| TTCTCGGAAGGGTTAGGTTT+AGG | 0.237072 | 6_1:+29937534 | None:intergenic |
| AACCGCTCTCGAAGTCTTAA+TGG | 0.238654 | 6_1:-29937391 | Msa0881780:CDS |
| CCTTGAAAGTTCTTTAAGTA+TGG | 0.240152 | 6_1:-29937433 | Msa0881780:CDS |
| TGTTTGCATCTATAACAATT+TGG | 0.250606 | 6_1:+29937249 | None:intergenic |
| GTAGTTGGGTTGGTTTCTTT+GGG | 0.266039 | 6_1:+29937456 | None:intergenic |
| TCTCGGAAGGGTTAGGTTTA+GGG | 0.267292 | 6_1:+29937535 | None:intergenic |
| AATGGTTTGTCAGCAGCTTC+TGG | 0.287143 | 6_1:-29937162 | Msa0881780:CDS |
| TTGAGGGGACTTGTTGTTGG+TGG | 0.289994 | 6_1:+29937503 | None:intergenic |
| CCTGATGAAGGCGAAGGTTT+AGG | 0.308909 | 6_1:-29936580 | Msa0881780:CDS |
| ATACATCACTCTTCTTCATT+AGG | 0.332064 | 6_1:+29936535 | None:intergenic |
| GTCTTGAGGGGACTTGTTGT+TGG | 0.343036 | 6_1:+29937500 | None:intergenic |
| TAGTTGGGTTGGTTTCTTTG+GGG | 0.344689 | 6_1:+29937457 | None:intergenic |
| GTTGAATTCTCGGAAGGGTT+AGG | 0.378551 | 6_1:+29937528 | None:intergenic |
| AAAGAACTTTCAAGGGTAGT+TGG | 0.386873 | 6_1:+29937441 | None:intergenic |
| CTCTTCCTCCTCTTCATAGC+TGG | 0.393408 | 6_1:+29937309 | None:intergenic |
| TGAGGGGACTTGTTGTTGGT+GGG | 0.402381 | 6_1:+29937504 | None:intergenic |
| AGGGGACTTGTTGTTGGTGG+GGG | 0.408399 | 6_1:+29937506 | None:intergenic |
| AGGTGGGGTGGTTGTTGATG+TGG | 0.426505 | 6_1:+29937122 | None:intergenic |
| AAGAACTTTCAAGGGTAGTT+GGG | 0.430510 | 6_1:+29937442 | None:intergenic |
| CCATACTTAAAGAACTTTCA+AGG | 0.430715 | 6_1:+29937433 | None:intergenic |
| GAGTTCAGAGCTCGTGAGAA+TGG | 0.435144 | 6_1:-29937369 | Msa0881780:CDS |
| GACTGCTTTGATGAACCATA+TGG | 0.435911 | 6_1:-29937211 | Msa0881780:CDS |
| ACCTCAACCTGATCAATATG+AGG | 0.437745 | 6_1:-29937103 | Msa0881780:CDS |
| TAACAATTTGGATATATAGA+AGG | 0.438362 | 6_1:+29937261 | None:intergenic |
| CATCAGAGGGAGGGTCTTGA+GGG | 0.445658 | 6_1:+29937487 | None:intergenic |
| CCTAAACCTTCGCCTTCATC+AGG | 0.453595 | 6_1:+29936580 | None:intergenic |
| CCCTCATATTGATCAGGTTG+AGG | 0.453934 | 6_1:+29937102 | None:intergenic |
| GAAGCTGCTGACAAACCATT+AGG | 0.476282 | 6_1:+29937165 | None:intergenic |
| GCAAACATGTGTTTCCCACT+TGG | 0.483219 | 6_1:-29937233 | Msa0881780:CDS |
| GGTCCTCTATCTCCATTGGC+TGG | 0.500299 | 6_1:+29936647 | None:intergenic |
| CATATTGATCAGGTTGAGGT+GGG | 0.500892 | 6_1:+29937106 | None:intergenic |
| TCATCAGAGGGAGGGTCTTG+AGG | 0.508193 | 6_1:+29937486 | None:intergenic |
| ACTTTCAAGGGTAGTTGGGT+TGG | 0.512734 | 6_1:+29937446 | None:intergenic |
| AGTTCAGAGCTCGTGAGAAT+GGG | 0.512950 | 6_1:-29937368 | Msa0881780:CDS |
| AGCTCGTGAGAATGGGAAGC+TGG | 0.512973 | 6_1:-29937361 | Msa0881780:CDS |
| AGTTGGGTTGGTTTCTTTGG+GGG | 0.515909 | 6_1:+29937458 | None:intergenic |
| CATCACTCTTCTTCATTAGG+AGG | 0.517441 | 6_1:+29936538 | None:intergenic |
| GAGGGGTCCTCTATCTCCAT+TGG | 0.519182 | 6_1:+29936643 | None:intergenic |
| AAGCCAGCCAATGGAGATAG+AGG | 0.520626 | 6_1:-29936650 | Msa0881780:CDS |
| TTGATCAGGTTGAGGTGGGG+TGG | 0.536734 | 6_1:+29937110 | None:intergenic |
| GAGGGGACTTGTTGTTGGTG+GGG | 0.544991 | 6_1:+29937505 | None:intergenic |
| AATGGGAAGCTGGCAGCTGA+TGG | 0.545369 | 6_1:-29937351 | Msa0881780:CDS |
| CATACTTAAAGAACTTTCAA+GGG | 0.549185 | 6_1:+29937434 | None:intergenic |
| TGAAAGTTCTTTAAGTATGG+AGG | 0.556383 | 6_1:-29937430 | Msa0881780:CDS |
| TCATATTGATCAGGTTGAGG+TGG | 0.558741 | 6_1:+29937105 | None:intergenic |
| TGATGATGAAAGCCAGCCAA+TGG | 0.578386 | 6_1:-29936659 | Msa0881780:CDS |
| GAGTAATATTCGTGAAGTGA+AGG | 0.580783 | 6_1:-29937289 | Msa0881780:CDS |
| CTGGCAGCTGATGGAGAAGG+TGG | 0.580844 | 6_1:-29937342 | Msa0881780:CDS |
| GGGGTGGTTGTTGATGTGGA+AGG | 0.586960 | 6_1:+29937126 | None:intergenic |
| ATATTGATCAGGTTGAGGTG+GGG | 0.595131 | 6_1:+29937107 | None:intergenic |
| ACTGCATCTGAGCCTGATGA+AGG | 0.598031 | 6_1:-29936592 | Msa0881780:CDS |
| CTCCATTAAGACTTCGAGAG+CGG | 0.599694 | 6_1:+29937389 | None:intergenic |
| ATGGTCCAGCTATGAAGAGG+AGG | 0.603822 | 6_1:-29937314 | Msa0881780:CDS |
| CTCGGATGCAACATCATCAG+AGG | 0.604023 | 6_1:+29936624 | None:intergenic |
| GGGGATTCATCATCAGAGGG+AGG | 0.610326 | 6_1:+29937477 | None:intergenic |
| TCGGATGCAACATCATCAGA+GGG | 0.613962 | 6_1:+29936625 | None:intergenic |
| GATGGAGAAGGTGGAAGTGA+TGG | 0.614959 | 6_1:-29937333 | Msa0881780:CDS |
| AGATGCAGTATCATCAGACT+CGG | 0.629894 | 6_1:+29936606 | None:intergenic |
| TCTGAGCCTGATGAAGGCGA+AGG | 0.633192 | 6_1:-29936586 | Msa0881780:CDS |
| GTGATGGTCCAGCTATGAAG+AGG | 0.637063 | 6_1:-29937317 | Msa0881780:CDS |
| AAGCTGGCAGCTGATGGAGA+AGG | 0.643145 | 6_1:-29937345 | Msa0881780:CDS |
| CCTCAACCTGATCAATATGA+GGG | 0.650750 | 6_1:-29937102 | Msa0881780:intron |
| ATCAGAGGGAGGGTCTTGAG+GGG | 0.650850 | 6_1:+29937488 | None:intergenic |
| TTCATCAAAGCAGTCCAAGT+GGG | 0.656120 | 6_1:+29937219 | None:intergenic |
| GGGATTCATCATCAGAGGGA+GGG | 0.659890 | 6_1:+29937478 | None:intergenic |
| GTTCATCAAAGCAGTCCAAG+TGG | 0.685541 | 6_1:+29937218 | None:intergenic |
| CGGATGCAACATCATCAGAG+GGG | 0.768604 | 6_1:+29936626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTTGAATTAGAAAATT+AGG | + | chr6_1:29937018-29937037 | None:intergenic | 15.0% |
| !! | TTAAAATTATAATTGCTTCA+TGG | + | chr6_1:29937376-29937395 | None:intergenic | 15.0% |
| !! | ATAGTTTGAATTAGAAAATT+AGG | + | chr6_1:29937018-29937037 | None:intergenic | 15.0% |
| !! | TTAAAATTATAATTGCTTCA+TGG | + | chr6_1:29937376-29937395 | None:intergenic | 15.0% |
| !! | TAACAATTTGGATATATAGA+AGG | + | chr6_1:29936825-29936844 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+TGG | - | chr6_1:29937056-29937075 | Msa0881780:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | + | chr6_1:29937126-29937145 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | - | chr6_1:29937401-29937420 | Msa0881780:CDS | 20.0% |
| !! | TAACAATTTGGATATATAGA+AGG | + | chr6_1:29936825-29936844 | None:intergenic | 20.0% |
| !!! | TTTTTCGCACTATAATTTTT+TGG | - | chr6_1:29937056-29937075 | Msa0881780:intron | 20.0% |
| !! | AACATTACATAATTGAATCT+TGG | + | chr6_1:29937126-29937145 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCTTTTGTTACT+AGG | - | chr6_1:29937401-29937420 | Msa0881780:CDS | 20.0% |
| ! | CATACTTAAAGAACTTTCAA+GGG | + | chr6_1:29936652-29936671 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | + | chr6_1:29936837-29936856 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | + | chr6_1:29937223-29937242 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | - | chr6_1:29937266-29937285 | Msa0881780:CDS | 25.0% |
| ! | CATACTTAAAGAACTTTCAA+GGG | + | chr6_1:29936652-29936671 | None:intergenic | 25.0% |
| ! | TGTTTGCATCTATAACAATT+TGG | + | chr6_1:29936837-29936856 | None:intergenic | 25.0% |
| ! | CATATATATGTTTGTGTGTA+TGG | + | chr6_1:29937223-29937242 | None:intergenic | 25.0% |
| ! | TTATGAGATCAAATTCATGT+AGG | - | chr6_1:29937266-29937285 | Msa0881780:CDS | 25.0% |
| CCATACTTAAAGAACTTTCA+AGG | + | chr6_1:29936653-29936672 | None:intergenic | 30.0% | |
| CCTTGAAAGTTCTTTAAGTA+TGG | - | chr6_1:29936650-29936669 | Msa0881780:CDS | 30.0% | |
| TGAAAGTTCTTTAAGTATGG+AGG | - | chr6_1:29936653-29936672 | Msa0881780:CDS | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | + | chr6_1:29936890-29936909 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | + | chr6_1:29936905-29936924 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | - | chr6_1:29936903-29936922 | Msa0881780:intron | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | + | chr6_1:29937097-29937116 | None:intergenic | 30.0% | |
| CCATACTTAAAGAACTTTCA+AGG | + | chr6_1:29936653-29936672 | None:intergenic | 30.0% | |
| CCTTGAAAGTTCTTTAAGTA+TGG | - | chr6_1:29936650-29936669 | Msa0881780:CDS | 30.0% | |
| TGAAAGTTCTTTAAGTATGG+AGG | - | chr6_1:29936653-29936672 | Msa0881780:CDS | 30.0% | |
| AAAAATGGTGTTCTTCCATA+TGG | + | chr6_1:29936890-29936909 | None:intergenic | 30.0% | |
| CATTAGGATCACAACAAAAA+TGG | + | chr6_1:29936905-29936924 | None:intergenic | 30.0% | |
| !! | CATTTTTGTTGTGATCCTAA+TGG | - | chr6_1:29936903-29936922 | Msa0881780:intron | 30.0% |
| TATATAGCCAATAAAACCCT+AGG | + | chr6_1:29937097-29937116 | None:intergenic | 30.0% | |
| AAGAACTTTCAAGGGTAGTT+GGG | + | chr6_1:29936644-29936663 | None:intergenic | 35.0% | |
| AAAGAACTTTCAAGGGTAGT+TGG | + | chr6_1:29936645-29936664 | None:intergenic | 35.0% | |
| GAGTAATATTCGTGAAGTGA+AGG | - | chr6_1:29936794-29936813 | Msa0881780:intron | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | + | chr6_1:29936990-29937009 | None:intergenic | 35.0% |
| AAGAACTTTCAAGGGTAGTT+GGG | + | chr6_1:29936644-29936663 | None:intergenic | 35.0% | |
| AAAGAACTTTCAAGGGTAGT+TGG | + | chr6_1:29936645-29936664 | None:intergenic | 35.0% | |
| GAGTAATATTCGTGAAGTGA+AGG | - | chr6_1:29936794-29936813 | Msa0881780:intron | 35.0% | |
| ! | GTTTTACCCTCATATTGATC+AGG | + | chr6_1:29936990-29937009 | None:intergenic | 35.0% |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | + | chr6_1:29936629-29936648 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | + | chr6_1:29936630-29936649 | None:intergenic | 40.0% |
| TTCATCAAAGCAGTCCAAGT+GGG | + | chr6_1:29936867-29936886 | None:intergenic | 40.0% | |
| GACTGCTTTGATGAACCATA+TGG | - | chr6_1:29936872-29936891 | Msa0881780:intron | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | + | chr6_1:29936979-29936998 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | + | chr6_1:29936980-29936999 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | + | chr6_1:29936981-29937000 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | - | chr6_1:29936980-29936999 | Msa0881780:intron | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | - | chr6_1:29936981-29937000 | Msa0881780:intron | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | + | chr6_1:29937090-29937109 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | - | chr6_1:29937087-29937106 | Msa0881780:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | + | chr6_1:29937480-29937499 | None:intergenic | 40.0% | |
| !! | TAGTTGGGTTGGTTTCTTTG+GGG | + | chr6_1:29936629-29936648 | None:intergenic | 40.0% |
| !! | GTAGTTGGGTTGGTTTCTTT+GGG | + | chr6_1:29936630-29936649 | None:intergenic | 40.0% |
| TTCATCAAAGCAGTCCAAGT+GGG | + | chr6_1:29936867-29936886 | None:intergenic | 40.0% | |
| GACTGCTTTGATGAACCATA+TGG | - | chr6_1:29936872-29936891 | Msa0881780:intron | 40.0% | |
| !! | ATATTGATCAGGTTGAGGTG+GGG | + | chr6_1:29936979-29936998 | None:intergenic | 40.0% |
| !! | CATATTGATCAGGTTGAGGT+GGG | + | chr6_1:29936980-29936999 | None:intergenic | 40.0% |
| !! | TCATATTGATCAGGTTGAGG+TGG | + | chr6_1:29936981-29937000 | None:intergenic | 40.0% |
| ACCTCAACCTGATCAATATG+AGG | - | chr6_1:29936980-29936999 | Msa0881780:intron | 40.0% | |
| CCTCAACCTGATCAATATGA+GGG | - | chr6_1:29936981-29937000 | Msa0881780:intron | 40.0% | |
| CCAATAAAACCCTAGGTCAT+TGG | + | chr6_1:29937090-29937109 | None:intergenic | 40.0% | |
| !! | CCAATGACCTAGGGTTTTAT+TGG | - | chr6_1:29937087-29937106 | Msa0881780:intron | 40.0% |
| AGATGCAGTATCATCAGACT+CGG | + | chr6_1:29937480-29937499 | None:intergenic | 40.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | + | chr6_1:29936551-29936570 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | + | chr6_1:29936552-29936571 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | + | chr6_1:29936558-29936577 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | + | chr6_1:29936612-29936631 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | + | chr6_1:29936613-29936632 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | + | chr6_1:29936628-29936647 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | + | chr6_1:29936631-29936650 | None:intergenic | 45.0% |
| ACTTTCAAGGGTAGTTGGGT+TGG | + | chr6_1:29936640-29936659 | None:intergenic | 45.0% | |
| AACCGCTCTCGAAGTCTTAA+TGG | - | chr6_1:29936692-29936711 | Msa0881780:intron | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | + | chr6_1:29936697-29936716 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | - | chr6_1:29936715-29936734 | Msa0881780:intron | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | - | chr6_1:29936850-29936869 | Msa0881780:intron | 45.0% | |
| GTTCATCAAAGCAGTCCAAG+TGG | + | chr6_1:29936868-29936887 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | + | chr6_1:29936921-29936940 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | - | chr6_1:29936921-29936940 | Msa0881780:intron | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | + | chr6_1:29936984-29937003 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | - | chr6_1:29937078-29937097 | Msa0881780:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | - | chr6_1:29937424-29937443 | Msa0881780:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | + | chr6_1:29937461-29937480 | None:intergenic | 45.0% | |
| TCTCGGAAGGGTTAGGTTTA+GGG | + | chr6_1:29936551-29936570 | None:intergenic | 45.0% | |
| TTCTCGGAAGGGTTAGGTTT+AGG | + | chr6_1:29936552-29936571 | None:intergenic | 45.0% | |
| GTTGAATTCTCGGAAGGGTT+AGG | + | chr6_1:29936558-29936577 | None:intergenic | 45.0% | |
| TTGGGGGATTCATCATCAGA+GGG | + | chr6_1:29936612-29936631 | None:intergenic | 45.0% | |
| TTTGGGGGATTCATCATCAG+AGG | + | chr6_1:29936613-29936632 | None:intergenic | 45.0% | |
| !! | AGTTGGGTTGGTTTCTTTGG+GGG | + | chr6_1:29936628-29936647 | None:intergenic | 45.0% |
| !! | GGTAGTTGGGTTGGTTTCTT+TGG | + | chr6_1:29936631-29936650 | None:intergenic | 45.0% |
| ACTTTCAAGGGTAGTTGGGT+TGG | + | chr6_1:29936640-29936659 | None:intergenic | 45.0% | |
| AACCGCTCTCGAAGTCTTAA+TGG | - | chr6_1:29936692-29936711 | Msa0881780:intron | 45.0% | |
| CTCCATTAAGACTTCGAGAG+CGG | + | chr6_1:29936697-29936716 | None:intergenic | 45.0% | |
| AGTTCAGAGCTCGTGAGAAT+GGG | - | chr6_1:29936715-29936734 | Msa0881780:intron | 45.0% | |
| GCAAACATGTGTTTCCCACT+TGG | - | chr6_1:29936850-29936869 | Msa0881780:intron | 45.0% | |
| GTTCATCAAAGCAGTCCAAG+TGG | + | chr6_1:29936868-29936887 | None:intergenic | 45.0% | |
| GAAGCTGCTGACAAACCATT+AGG | + | chr6_1:29936921-29936940 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCAGCAGCTTC+TGG | - | chr6_1:29936921-29936940 | Msa0881780:intron | 45.0% |
| ! | CCCTCATATTGATCAGGTTG+AGG | + | chr6_1:29936984-29937003 | None:intergenic | 45.0% |
| GTCAACACTCCAATGACCTA+GGG | - | chr6_1:29937078-29937097 | Msa0881780:intron | 45.0% | |
| ! | TGATGATGAAAGCCAGCCAA+TGG | - | chr6_1:29937424-29937443 | Msa0881780:CDS | 45.0% |
| TCGGATGCAACATCATCAGA+GGG | + | chr6_1:29937461-29937480 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTTTAACTAAT+CGG | - | chr6_1:29937306-29937325 | Msa0881780:CDS | 5.0% |
| !!! | ATTTTTTTTTTTTAACTAAT+CGG | - | chr6_1:29937306-29937325 | Msa0881780:CDS | 5.0% |
| TGGGGGTTGAATTCTCGGAA+GGG | + | chr6_1:29936563-29936582 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | + | chr6_1:29936568-29936587 | None:intergenic | 50.0% |
| !! | TGAGGGGACTTGTTGTTGGT+GGG | + | chr6_1:29936582-29936601 | None:intergenic | 50.0% |
| !! | TTGAGGGGACTTGTTGTTGG+TGG | + | chr6_1:29936583-29936602 | None:intergenic | 50.0% |
| !! | GTCTTGAGGGGACTTGTTGT+TGG | + | chr6_1:29936586-29936605 | None:intergenic | 50.0% |
| GGGATTCATCATCAGAGGGA+GGG | + | chr6_1:29936608-29936627 | None:intergenic | 50.0% | |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | + | chr6_1:29936689-29936708 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | - | chr6_1:29936714-29936733 | Msa0881780:intron | 50.0% | |
| GATGGAGAAGGTGGAAGTGA+TGG | - | chr6_1:29936750-29936769 | Msa0881780:intron | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | - | chr6_1:29936766-29936785 | Msa0881780:intron | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | - | chr6_1:29936769-29936788 | Msa0881780:intron | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | + | chr6_1:29936777-29936796 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | - | chr6_1:29937077-29937096 | Msa0881780:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | - | chr6_1:29937433-29937452 | Msa0881780:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | + | chr6_1:29937460-29937479 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | + | chr6_1:29937462-29937481 | None:intergenic | 50.0% | |
| ACTGCATCTGAGCCTGATGA+AGG | - | chr6_1:29937491-29937510 | Msa0881780:CDS | 50.0% | |
| CCTAAACCTTCGCCTTCATC+AGG | + | chr6_1:29937506-29937525 | None:intergenic | 50.0% | |
| CCTGATGAAGGCGAAGGTTT+AGG | - | chr6_1:29937503-29937522 | Msa0881780:CDS | 50.0% | |
| TGGGGGTTGAATTCTCGGAA+GGG | + | chr6_1:29936563-29936582 | None:intergenic | 50.0% | |
| ! | GTTGGTGGGGGTTGAATTCT+CGG | + | chr6_1:29936568-29936587 | None:intergenic | 50.0% |
| !! | TGAGGGGACTTGTTGTTGGT+GGG | + | chr6_1:29936582-29936601 | None:intergenic | 50.0% |
| !! | TTGAGGGGACTTGTTGTTGG+TGG | + | chr6_1:29936583-29936602 | None:intergenic | 50.0% |
| !! | GTCTTGAGGGGACTTGTTGT+TGG | + | chr6_1:29936586-29936605 | None:intergenic | 50.0% |
| GGGATTCATCATCAGAGGGA+GGG | + | chr6_1:29936608-29936627 | None:intergenic | 50.0% | |
| ! | AGACTTCGAGAGCGGTTTTC+AGG | + | chr6_1:29936689-29936708 | None:intergenic | 50.0% |
| GAGTTCAGAGCTCGTGAGAA+TGG | - | chr6_1:29936714-29936733 | Msa0881780:intron | 50.0% | |
| GATGGAGAAGGTGGAAGTGA+TGG | - | chr6_1:29936750-29936769 | Msa0881780:intron | 50.0% | |
| GTGATGGTCCAGCTATGAAG+AGG | - | chr6_1:29936766-29936785 | Msa0881780:intron | 50.0% | |
| ATGGTCCAGCTATGAAGAGG+AGG | - | chr6_1:29936769-29936788 | Msa0881780:intron | 50.0% | |
| CTCTTCCTCCTCTTCATAGC+TGG | + | chr6_1:29936777-29936796 | None:intergenic | 50.0% | |
| GGTCAACACTCCAATGACCT+AGG | - | chr6_1:29937077-29937096 | Msa0881780:intron | 50.0% | |
| AAGCCAGCCAATGGAGATAG+AGG | - | chr6_1:29937433-29937452 | Msa0881780:CDS | 50.0% | |
| CGGATGCAACATCATCAGAG+GGG | + | chr6_1:29937460-29937479 | None:intergenic | 50.0% | |
| CTCGGATGCAACATCATCAG+AGG | + | chr6_1:29937462-29937481 | None:intergenic | 50.0% | |
| ACTGCATCTGAGCCTGATGA+AGG | - | chr6_1:29937491-29937510 | Msa0881780:CDS | 50.0% | |
| CCTAAACCTTCGCCTTCATC+AGG | + | chr6_1:29937506-29937525 | None:intergenic | 50.0% | |
| CCTGATGAAGGCGAAGGTTT+AGG | - | chr6_1:29937503-29937522 | Msa0881780:CDS | 50.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | + | chr6_1:29936564-29936583 | None:intergenic | 55.0% | |
| !! | AGGGGACTTGTTGTTGGTGG+GGG | + | chr6_1:29936580-29936599 | None:intergenic | 55.0% |
| !! | GAGGGGACTTGTTGTTGGTG+GGG | + | chr6_1:29936581-29936600 | None:intergenic | 55.0% |
| ATCAGAGGGAGGGTCTTGAG+GGG | + | chr6_1:29936598-29936617 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | + | chr6_1:29936599-29936618 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | + | chr6_1:29936600-29936619 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | + | chr6_1:29936609-29936628 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | - | chr6_1:29936722-29936741 | Msa0881780:intron | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | - | chr6_1:29936732-29936751 | Msa0881780:intron | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | - | chr6_1:29936738-29936757 | Msa0881780:intron | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | + | chr6_1:29936960-29936979 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | + | chr6_1:29936964-29936983 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | + | chr6_1:29936976-29936995 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | + | chr6_1:29937439-29937458 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | + | chr6_1:29937443-29937462 | None:intergenic | 55.0% | |
| TCTGAGCCTGATGAAGGCGA+AGG | - | chr6_1:29937497-29937516 | Msa0881780:CDS | 55.0% | |
| GTGGGGGTTGAATTCTCGGA+AGG | + | chr6_1:29936564-29936583 | None:intergenic | 55.0% | |
| !! | AGGGGACTTGTTGTTGGTGG+GGG | + | chr6_1:29936580-29936599 | None:intergenic | 55.0% |
| !! | GAGGGGACTTGTTGTTGGTG+GGG | + | chr6_1:29936581-29936600 | None:intergenic | 55.0% |
| ATCAGAGGGAGGGTCTTGAG+GGG | + | chr6_1:29936598-29936617 | None:intergenic | 55.0% | |
| CATCAGAGGGAGGGTCTTGA+GGG | + | chr6_1:29936599-29936618 | None:intergenic | 55.0% | |
| TCATCAGAGGGAGGGTCTTG+AGG | + | chr6_1:29936600-29936619 | None:intergenic | 55.0% | |
| GGGGATTCATCATCAGAGGG+AGG | + | chr6_1:29936609-29936628 | None:intergenic | 55.0% | |
| AGCTCGTGAGAATGGGAAGC+TGG | - | chr6_1:29936722-29936741 | Msa0881780:intron | 55.0% | |
| AATGGGAAGCTGGCAGCTGA+TGG | - | chr6_1:29936732-29936751 | Msa0881780:intron | 55.0% | |
| AAGCTGGCAGCTGATGGAGA+AGG | - | chr6_1:29936738-29936757 | Msa0881780:intron | 55.0% | |
| GGGGTGGTTGTTGATGTGGA+AGG | + | chr6_1:29936960-29936979 | None:intergenic | 55.0% | |
| AGGTGGGGTGGTTGTTGATG+TGG | + | chr6_1:29936964-29936983 | None:intergenic | 55.0% | |
| !! | TTGATCAGGTTGAGGTGGGG+TGG | + | chr6_1:29936976-29936995 | None:intergenic | 55.0% |
| GGTCCTCTATCTCCATTGGC+TGG | + | chr6_1:29937439-29937458 | None:intergenic | 55.0% | |
| GAGGGGTCCTCTATCTCCAT+TGG | + | chr6_1:29937443-29937462 | None:intergenic | 55.0% | |
| TCTGAGCCTGATGAAGGCGA+AGG | - | chr6_1:29937497-29937516 | Msa0881780:CDS | 55.0% | |
| CTGGCAGCTGATGGAGAAGG+TGG | - | chr6_1:29936741-29936760 | Msa0881780:intron | 60.0% | |
| CTGGCAGCTGATGGAGAAGG+TGG | - | chr6_1:29936741-29936760 | Msa0881780:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 29936540 | 29937565 | 29936540 | ID=Msa0881780;Name=Msa0881780 |
| chr6_1 | mRNA | 29936540 | 29937565 | 29936540 | ID=Msa0881780-mRNA-1;Parent=Msa0881780;Name=Msa0881780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|201 |
| chr6_1 | exon | 29937103 | 29937565 | 29937103 | ID=Msa0881780-mRNA-1:exon:7470;Parent=Msa0881780-mRNA-1 |
| chr6_1 | exon | 29936540 | 29936682 | 29936540 | ID=Msa0881780-mRNA-1:exon:7469;Parent=Msa0881780-mRNA-1 |
| chr6_1 | CDS | 29937103 | 29937565 | 29937103 | ID=Msa0881780-mRNA-1:cds;Parent=Msa0881780-mRNA-1 |
| chr6_1 | CDS | 29936540 | 29936682 | 29936540 | ID=Msa0881780-mRNA-1:cds;Parent=Msa0881780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
