AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881810 MtrunA17_Chr8g0384531 66.593 452 106 3 1 407 479 930 0.0 597
Msa0881810 MtrunA17_Chr1g0183681 33.729 421 218 6 3 394 524 912 2.83e-69 237
Msa0881810 MtrunA17_Chr8g0384551 92.473 93 7 0 185 277 17 109 6.98e-56 180
Msa0881810 MtrunA17_Chr4g0017211 30.370 405 223 6 6 357 1557 1955 5.41e-48 176
Msa0881810 MtrunA17_Chr4g0040301 27.009 448 253 9 6 380 98 544 5.38e-47 171
Msa0881810 MtrunA17_Chr5g0393461 28.302 424 251 10 6 385 299 713 1.11e-46 171
Msa0881810 MtrunA17_Chr5g0403921 30.000 420 218 14 6 381 288 675 8.79e-44 162
Msa0881810 MtrunA17_Chr4g0066741 29.534 386 199 10 6 360 290 633 6.20e-41 155
Msa0881810 MtrunA17_Chr4g0066651 31.043 393 196 13 6 357 1091 1449 4.25e-39 150
Msa0881810 MtrunA17_Chr5g0394201 29.091 385 204 10 6 357 465 813 7.09e-39 149
Msa0881810 MtrunA17_Chr1g0205891 29.668 391 195 15 6 357 478 827 1.73e-38 147
Msa0881810 MtrunA17_Chr3g0137091 28.647 377 194 12 6 350 412 745 7.10e-38 146
Msa0881810 MtrunA17_Chr2g0286291 29.016 386 201 10 6 360 293 636 1.93e-37 144
Msa0881810 MtrunA17_Chr4g0052341 26.139 417 227 8 6 384 859 1232 1.60e-36 142
Msa0881810 MtrunA17_Chr3g0095091 29.457 387 204 11 7 360 681 1031 1.12e-34 137
Msa0881810 MtrunA17_Chr7g0232121 25.977 435 229 10 6 383 151 549 1.30e-34 136
Msa0881810 MtrunA17_Chr1g0163011 28.744 414 211 11 26 372 329 725 6.26e-34 134
Msa0881810 MtrunA17_Chr5g0442141 28.424 387 208 9 7 360 727 1077 1.17e-33 134
Msa0881810 MtrunA17_Chr1g0175191 32.828 198 122 3 6 199 623 813 6.50e-26 110
Msa0881810 MtrunA17_Chr1g0175191 35.119 168 81 3 245 384 1063 1230 1.63e-22 100
Msa0881810 MtrunA17_Chr8g0348721 26.823 384 192 12 6 337 1088 1434 2.28e-25 109
Msa0881810 MtrunA17_Chr7g0248031 26.494 385 192 12 6 337 1096 1442 2.17e-24 106
Msa0881810 MtrunA17_Chr7g0257101 38.971 136 56 1 252 360 1200 1335 1.13e-20 94.7
Msa0881810 MtrunA17_Chr7g0257101 29.756 205 124 5 6 198 686 882 2.51e-18 87.8
Msa0881810 MtrunA17_Chr1g0190381 24.332 374 195 11 93 385 4 370 2.62e-20 93.2
Msa0881810 MtrunA17_Chr7g0233021 26.525 377 218 13 30 369 842 1196 4.44e-20 93.2
Msa0881810 MtrunA17_Chr7g0225791 26.596 376 219 16 30 371 894 1246 2.68e-19 90.5
Msa0881810 MtrunA17_Chr7g0224051 25.000 368 226 12 30 358 709 1065 7.78e-19 89.4
Msa0881810 MtrunA17_Chr3g0114161 24.185 368 230 13 30 358 839 1196 3.84e-18 87.0
Msa0881810 MtrunA17_Chr1g0191141 23.016 378 220 10 30 358 696 1051 6.29e-18 86.3
Msa0881810 MtrunA17_Chr2g0320751 29.167 168 91 3 244 384 850 1016 9.57e-17 82.8
Msa0881810 MtrunA17_Chr1g0168031 36.697 109 68 1 276 384 1046 1153 1.36e-15 79.3
Msa0881810 MtrunA17_Chr7g0231521 26.337 243 105 4 186 383 257 470 1.90e-15 78.6
Msa0881810 MtrunA17_Chr7g0231521 36.471 85 53 1 6 89 151 235 2.66e-11 65.5
Msa0881810 MtrunA17_Chr4g0069451 22.817 355 233 9 8 351 280 604 5.16e-15 77.0
Msa0881810 MtrunA17_Chr4g0024921 38.739 111 67 1 274 383 823 933 5.34e-15 77.4
Msa0881810 MtrunA17_Chr2g0320781 37.736 106 62 2 257 358 135 240 6.46e-15 73.9
Msa0881810 MtrunA17_Chr7g0233001 39.623 106 60 2 259 360 365 470 1.17e-14 75.9
Msa0881810 MtrunA17_Chr5g0437621 24.603 378 218 14 30 358 893 1252 1.54e-14 75.9
Msa0881810 MtrunA17_Chr7g0233031 40.404 99 58 1 263 360 1096 1194 2.50e-14 75.1
Msa0881810 MtrunA17_Chr7g0232971 37.500 112 63 2 274 378 1160 1271 5.83e-14 74.3
Msa0881810 MtrunA17_Chr4g0047081 37.383 107 63 2 258 360 1079 1185 1.41e-13 72.8
Msa0881810 MtrunA17_Chr7g0232991 42.529 87 49 1 275 360 523 609 9.22e-13 70.1
Msa0881810 MtrunA17_Chr2g0281601 28.662 157 83 2 237 364 1123 1279 3.89e-12 68.6
Msa0881810 MtrunA17_Chr7g0255821 31.579 133 80 3 237 358 661 793 1.01e-11 67.0
Msa0881810 MtrunA17_Chr1g0212331 34.234 111 70 2 276 383 928 1038 1.96e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881810 AT5G63950.1 61.589 453 130 4 1 409 472 924 0.0 536
Msa0881810 AT5G63950.2 63.007 419 123 3 23 409 489 907 8.35e-175 516
Msa0881810 AT2G18760.4 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.1 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.2 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.7 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.5 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.6 34.752 423 215 6 3 396 516 906 9.66e-72 244
Msa0881810 AT2G18760.3 34.752 423 215 6 3 396 575 965 1.15e-71 244
Msa0881810 AT1G03750.1 28.289 456 251 10 1 382 241 694 4.55e-49 178
Msa0881810 AT3G54280.2 30.120 415 230 10 3 363 1586 1994 5.10e-48 176
Msa0881810 AT3G54280.1 30.120 415 230 10 3 363 1555 1963 5.36e-48 176
Msa0881810 AT3G19210.3 29.508 427 242 10 6 385 295 709 3.05e-46 170
Msa0881810 AT3G19210.1 29.508 427 242 10 6 385 295 709 5.09e-46 170
Msa0881810 AT3G19210.2 29.343 426 242 11 6 385 295 707 9.84e-44 163
Msa0881810 AT2G28290.3 31.266 387 203 11 6 357 856 1214 5.43e-42 159
Msa0881810 AT2G28290.4 31.266 387 203 11 6 357 856 1214 5.43e-42 159
Msa0881810 AT2G28290.6 31.266 387 203 11 6 357 857 1215 5.43e-42 159
Msa0881810 AT2G28290.1 31.959 388 199 12 6 357 856 1214 5.59e-42 159
Msa0881810 AT2G28290.5 31.959 388 199 12 6 357 857 1215 5.75e-42 159
Msa0881810 AT2G28290.2 31.959 388 199 12 6 357 856 1214 6.61e-42 158
Msa0881810 AT2G25170.2 27.619 420 228 12 6 393 413 788 8.52e-40 152
Msa0881810 AT2G25170.1 27.619 420 228 12 6 393 396 771 9.69e-40 152
Msa0881810 AT2G25170.4 27.619 420 228 12 6 393 396 771 9.69e-40 152
Msa0881810 AT2G25170.3 27.619 420 228 12 6 393 422 797 1.01e-39 152
Msa0881810 AT5G66750.1 28.205 429 228 12 6 388 306 700 1.07e-38 148
Msa0881810 AT5G19310.2 29.534 386 202 13 6 357 223 572 2.08e-38 147
Msa0881810 AT5G19310.1 29.534 386 202 13 6 357 487 836 2.63e-38 147
Msa0881810 AT3G06400.3 28.238 386 204 10 6 360 291 634 4.08e-38 147
Msa0881810 AT3G06400.1 28.238 386 204 10 6 360 291 634 4.78e-38 147
Msa0881810 AT3G06010.1 29.351 385 204 10 6 357 505 854 5.01e-38 147
Msa0881810 AT3G06400.2 28.238 386 204 10 6 360 291 634 5.11e-38 147
Msa0881810 AT2G44980.1 29.082 392 199 11 6 357 157 509 9.86e-38 145
Msa0881810 AT2G44980.2 28.109 402 203 10 6 357 163 528 7.38e-37 143
Msa0881810 AT2G44980.3 28.109 402 203 10 6 357 162 527 8.41e-37 143
Msa0881810 AT5G18620.1 28.756 386 202 10 6 360 296 639 1.36e-36 142
Msa0881810 AT5G18620.2 28.756 386 202 10 6 360 296 639 1.53e-36 142
Msa0881810 AT4G31900.2 26.133 375 201 9 6 350 289 617 4.35e-36 141
Msa0881810 AT4G31900.1 26.133 375 201 9 6 350 330 658 4.37e-36 141
Msa0881810 AT4G31900.3 26.133 375 201 9 6 350 330 658 4.40e-36 141
Msa0881810 AT2G13370.1 28.165 387 207 8 7 360 735 1083 1.60e-35 139
Msa0881810 AT2G13370.2 28.165 387 207 8 7 360 735 1083 1.60e-35 139
Msa0881810 AT2G13370.3 28.165 387 207 8 7 360 735 1083 1.60e-35 139
Msa0881810 AT1G08600.1 25.587 426 242 9 30 383 852 1274 1.21e-34 137
Msa0881810 AT1G08600.4 25.587 426 242 9 30 383 873 1295 1.23e-34 137
Msa0881810 AT1G08600.3 25.587 426 242 9 30 383 873 1295 1.23e-34 137
Msa0881810 AT1G08600.2 25.587 426 242 9 30 383 873 1295 1.23e-34 137
Msa0881810 AT5G44800.1 26.943 386 196 9 6 352 803 1141 2.44e-33 133
Msa0881810 AT2G02090.1 26.877 413 208 12 26 364 347 739 1.61e-30 124
Msa0881810 AT3G12810.2 33.838 198 120 3 6 199 634 824 1.50e-25 110
Msa0881810 AT3G12810.2 29.851 268 139 8 154 384 984 1239 6.51e-24 105
Msa0881810 AT3G12810.1 33.838 198 120 3 6 199 638 828 1.52e-25 110
Msa0881810 AT3G12810.1 29.851 268 139 8 154 384 988 1243 6.34e-24 105
Msa0881810 AT2G46020.5 25.323 387 194 13 6 337 1082 1428 1.53e-21 98.2
Msa0881810 AT2G46020.1 25.323 387 194 13 6 337 1082 1428 1.53e-21 98.2
Msa0881810 AT2G46020.6 25.323 387 194 13 6 337 1082 1428 1.53e-21 98.2
Msa0881810 AT2G46020.2 25.323 387 194 13 6 337 1083 1429 1.54e-21 98.2
Msa0881810 AT2G46020.3 25.323 387 194 13 6 337 1083 1429 1.54e-21 98.2
Msa0881810 AT2G46020.4 25.323 387 194 13 6 337 1083 1429 1.54e-21 98.2
Msa0881810 AT3G57300.1 38.971 136 56 1 252 360 1214 1349 7.25e-21 95.9
Msa0881810 AT3G57300.1 29.384 211 127 6 2 198 688 890 6.85e-18 86.7
Msa0881810 AT3G57300.4 38.971 136 56 1 252 360 1214 1349 7.25e-21 95.9
Msa0881810 AT3G57300.4 29.384 211 127 6 2 198 688 890 6.85e-18 86.7
Msa0881810 AT3G57300.2 38.971 136 56 1 252 360 1247 1382 8.35e-21 95.9
Msa0881810 AT3G57300.2 29.268 205 125 5 6 198 727 923 8.32e-18 86.7
Msa0881810 AT3G57300.3 28.899 218 133 6 2 205 688 897 6.13e-18 87.0
Msa0881810 AT1G05490.1 25.132 378 216 12 30 367 1009 1359 9.56e-17 83.2
Msa0881810 AT3G24340.1 26.099 364 220 14 30 366 745 1086 1.37e-15 79.7
Msa0881810 AT5G22750.1 28.144 167 92 2 245 384 864 1029 4.68e-15 77.8
Msa0881810 AT1G05120.2 37.273 110 68 1 276 384 766 875 1.83e-14 75.9
Msa0881810 AT1G05120.1 37.273 110 68 1 276 384 723 832 2.16e-14 75.9
Msa0881810 AT5G43530.1 35.185 108 69 1 276 383 1170 1276 3.32e-14 75.5
Msa0881810 AT5G43530.1 25.362 276 152 8 6 248 790 1044 2.32e-13 72.8
Msa0881810 AT2G40770.2 35.922 103 63 1 287 386 1514 1616 4.09e-14 75.1
Msa0881810 AT2G40770.1 35.922 103 63 1 287 386 1514 1616 4.09e-14 75.1
Msa0881810 AT2G40770.3 35.922 103 63 1 287 386 1514 1616 4.09e-14 75.1
Msa0881810 AT1G02670.6 36.036 111 69 1 276 384 553 663 4.38e-14 74.7
Msa0881810 AT1G02670.3 36.036 111 69 1 276 384 580 690 5.09e-14 74.3
Msa0881810 AT1G02670.7 36.036 111 69 1 276 384 557 667 6.40e-14 73.9
Msa0881810 AT1G02670.1 36.036 111 69 1 276 384 568 678 7.19e-14 73.9
Msa0881810 AT5G20420.1 44.048 84 46 1 276 358 1126 1209 2.12e-13 72.8
Msa0881810 AT3G20010.3 28.910 211 112 8 204 383 576 779 3.05e-13 72.0
Msa0881810 AT3G20010.1 28.910 211 112 8 204 383 842 1045 3.51e-13 72.0
Msa0881810 AT3G20010.5 28.910 211 112 8 204 383 842 1045 3.51e-13 72.0
Msa0881810 AT3G20010.7 28.910 211 112 8 204 383 842 1045 3.51e-13 72.0
Msa0881810 AT5G05130.1 33.645 107 69 1 281 385 775 881 4.35e-13 71.6
Msa0881810 AT3G20010.2 28.910 211 112 8 204 383 551 754 4.37e-13 71.6
Msa0881810 AT3G42670.4 44.048 84 46 1 276 358 1122 1205 5.18e-13 71.6
Msa0881810 AT3G42670.2 44.048 84 46 1 276 358 1120 1203 5.31e-13 71.6
Msa0881810 AT3G42670.3 44.048 84 46 1 276 358 1120 1203 5.31e-13 71.6
Msa0881810 AT3G42670.1 44.048 84 46 1 276 358 1120 1203 5.31e-13 71.6
Msa0881810 AT1G11100.5 34.234 111 70 2 276 383 971 1081 1.82e-12 69.7
Msa0881810 AT1G11100.3 34.234 111 70 2 276 383 1015 1125 2.02e-12 69.7
Msa0881810 AT1G11100.1 34.234 111 70 2 276 383 1114 1224 2.13e-12 69.7
Msa0881810 AT1G11100.2 34.234 111 70 2 276 383 1157 1267 2.41e-12 69.3
Msa0881810 AT1G11100.4 34.234 111 70 2 276 383 1158 1268 2.41e-12 69.3
Msa0881810 AT1G61140.3 26.590 173 85 3 241 383 958 1118 2.60e-12 69.3
Msa0881810 AT1G61140.1 26.590 173 85 3 241 383 1116 1276 3.15e-12 69.3
Msa0881810 AT1G50410.2 32.432 111 72 2 276 383 869 979 5.56e-11 65.1
Msa0881810 AT1G50410.1 32.432 111 72 2 276 383 869 979 5.56e-11 65.1
Msa0881810 AT1G50410.3 32.432 111 72 2 276 383 869 979 5.56e-11 65.1
Msa0881810 AT3G16600.1 37.209 86 54 0 288 373 510 595 6.44e-11 64.7
Msa0881810 AT2G16390.1 27.976 168 86 3 245 380 695 859 9.05e-11 64.3
Msa0881810 AT2G16390.2 27.976 168 86 3 245 380 698 862 9.89e-11 64.3

Find 68 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAACTTCCACCATTTAT+AGG 0.232153 6_1:+30115247 None:intergenic
GATGCATAAAATCCTTCTTT+TGG 0.247095 6_1:+30109905 None:intergenic
AATATTTCTCTTGACATCTA+AGG 0.252786 6_1:-30112991 Msa0881810:CDS
ACATCTAAGGTTGGTGGTAT+AGG 0.323824 6_1:-30112978 Msa0881810:CDS
TCATTGCTTGCAGGATCTTA+AGG 0.332632 6_1:-30109942 Msa0881810:intron
TTAGATGTCAAGAGAAATAT+TGG 0.339252 6_1:+30112993 None:intergenic
ATTATTCGCATTATCATTAG+TGG 0.346944 6_1:-30115574 Msa0881810:CDS
GGTTAATGTTGCAGAGATAT+TGG 0.348033 6_1:-30113705 Msa0881810:CDS
GCTTCCATTGAACGATGTTC+AGG 0.351564 6_1:-30114119 Msa0881810:intron
AGCACCACTGGCTGCCATTT+GGG 0.351672 6_1:-30113955 Msa0881810:intron
CAGGATTTCCAAGATGTTGC+TGG 0.352931 6_1:-30113020 Msa0881810:CDS
AAGCACCACTGGCTGCCATT+TGG 0.370955 6_1:-30113956 Msa0881810:CDS
GAGTGCTTGGGTTCTTGATA+AGG 0.383370 6_1:+30115629 None:intergenic
CATTTACTTCTCTGAGTGCT+TGG 0.383559 6_1:+30115616 None:intergenic
TCTGCAACATTAACCTCATC+TGG 0.425290 6_1:+30113713 None:intergenic
AATGATAATGCGAATAATGC+TGG 0.429672 6_1:+30115579 None:intergenic
ATGTACCTTGGGTTCCAATC+AGG 0.430220 6_1:+30112915 None:intergenic
TCCTTTCTCAATAGAAGCTA+AGG 0.430644 6_1:-30114231 Msa0881810:intron
AGAAGCTAAGGGCTCATATT+CGG 0.436415 6_1:-30114219 Msa0881810:CDS
AGTCCTTAGGTGGGACTACA+TGG 0.442816 6_1:-30116765 Msa0881810:CDS
ATTTACTTCTCTGAGTGCTT+GGG 0.448876 6_1:+30115617 None:intergenic
CTCTTGACATCTAAGGTTGG+TGG 0.453488 6_1:-30112984 Msa0881810:CDS
TAACTTCCTGCAGGAATTGT+GGG 0.469903 6_1:-30115407 Msa0881810:intron
TCTCTGTCACCAAGCAACTC+AGG 0.471674 6_1:+30115364 None:intergenic
TTGGAGGTCCAGCAACATCT+TGG 0.471789 6_1:+30113012 None:intergenic
ATTTGATCGCCGAAGGGCAT+AGG 0.472749 6_1:-30113507 Msa0881810:CDS
TGATTGTAGTTGATCCTGAT+TGG 0.481091 6_1:-30112929 Msa0881810:CDS
AGAAAAGAGAAATCGTTGTA+TGG 0.496604 6_1:-30114141 Msa0881810:CDS
ATCTGCTGCCCTGAGTTGCT+TGG 0.496933 6_1:-30115373 Msa0881810:CDS
GCACGCTTTGTCATTAGAAG+TGG 0.500656 6_1:+30113776 None:intergenic
ATAACTTCCTGCAGGAATTG+TGG 0.514354 6_1:-30115408 Msa0881810:intron
CTAACCTGAACATCGTTCAA+TGG 0.526343 6_1:+30114115 None:intergenic
TTTGATCGCCGAAGGGCATA+GGG 0.532060 6_1:-30113506 Msa0881810:CDS
GATAAGTACCCTATGCCCTT+CGG 0.532775 6_1:+30113498 None:intergenic
TTTCTCTTGACATCTAAGGT+TGG 0.539138 6_1:-30112987 Msa0881810:CDS
TTTGCGGACAGTATCATAAG+TGG 0.539843 6_1:+30116795 None:intergenic
TTTGCCTCCCTTTAGGACAA+AGG 0.540299 6_1:-30116829 Msa0881810:intron
TGTAGTCCCACCTAAGGACT+TGG 0.541035 6_1:+30116768 None:intergenic
CATAACAGGAAGTACCCAAA+TGG 0.546135 6_1:+30113941 None:intergenic
CTCTGTCACCAAGCAACTCA+GGG 0.548842 6_1:+30115365 None:intergenic
GATATTGGTAAAGCATATAA+CGG 0.553102 6_1:-30113690 Msa0881810:CDS
AGTTGCTTGGTGACAGAGAA+TGG 0.558130 6_1:-30115360 Msa0881810:intron
TAGGATAATTTGATCGCCGA+AGG 0.562231 6_1:-30113514 Msa0881810:CDS
AGAAAACATCTATAGAAAGC+AGG 0.565600 6_1:-30110270 Msa0881810:intron
TTTGACCAATACGATATGCT+CGG 0.566370 6_1:+30110339 None:intergenic
GTTGACCGAGCATATCGTAT+TGG 0.571195 6_1:-30110344 Msa0881810:CDS
TTCCCATGTAGTCCCACCTA+AGG 0.572540 6_1:+30116762 None:intergenic
TGAGGATGTGTTGGACGGGA+TGG 0.574924 6_1:-30113750 Msa0881810:CDS
AATGACAAAGCGTGCAGATG+AGG 0.575624 6_1:-30113768 Msa0881810:CDS
ATGATAATGCGAATAATGCT+GGG 0.576642 6_1:+30115580 None:intergenic
CCTTTCTCAATAGAAGCTAA+GGG 0.578996 6_1:-30114230 Msa0881810:intron
TTTATGCATCTGTGACTCAA+CGG 0.589175 6_1:-30109892 Msa0881810:CDS
GCGTGCAGATGAGGATGTGT+TGG 0.591224 6_1:-30113759 Msa0881810:CDS
CAGATGAGGATGTGTTGGAC+GGG 0.593535 6_1:-30113754 Msa0881810:CDS
GCAGATGAGGATGTGTTGGA+CGG 0.607537 6_1:-30113755 Msa0881810:CDS
CTCAATGCTCAAGCCAGATG+AGG 0.612196 6_1:-30113726 Msa0881810:CDS
TTGATCCTGATTGGAACCCA+AGG 0.613741 6_1:-30112920 Msa0881810:intron
AAAATACCAAGTCCTTAGGT+GGG 0.616674 6_1:-30116774 Msa0881810:CDS
TATTTCTTCATCTACATCAG+AGG 0.620971 6_1:-30115200 Msa0881810:intron
TTTGAGACGTATGAAGAGTG+AGG 0.622907 6_1:-30114188 Msa0881810:CDS
GATGTCAAGAGAAATATTGG+AGG 0.632143 6_1:+30112996 None:intergenic
GCCACTGCAAAATAAACTCA+AGG 0.632847 6_1:-30115548 Msa0881810:intron
GGAATACACGATGCTTGATG+AGG 0.650701 6_1:-30116743 Msa0881810:intron
GTCCTTAGGTGGGACTACAT+GGG 0.652432 6_1:-30116764 Msa0881810:CDS
AGGATAATTTGATCGCCGAA+GGG 0.653083 6_1:-30113513 Msa0881810:CDS
GACTCAACGGCAATTCAATG+AGG 0.659877 6_1:-30109879 Msa0881810:CDS
AGTACCCAAATGGCAGCCAG+TGG 0.678342 6_1:+30113951 None:intergenic
GTGTATAGACTGATGACATG+CGG 0.740167 6_1:-30110302 Msa0881810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATCTATTTTCTAAAA+GGG + chr6_1:30109677-30109696 None:intergenic 10.0%
!!! TATATTATCTATTTTCTAAA+AGG + chr6_1:30109678-30109697 None:intergenic 10.0%
!!! TTTTAGAAAATAGATAATAT+AGG - chr6_1:30109677-30109696 Msa0881810:intron 10.0%
!!! TAATAGTTATTTTTTTTTTC+CGG - chr6_1:30110648-30110667 Msa0881810:intron 10.0%
!!! TATTATCTATTTTCTAAAAG+GGG + chr6_1:30109676-30109695 None:intergenic 15.0%
!! AATAGATAATTTAGAAAAGT+TGG - chr6_1:30109701-30109720 Msa0881810:intron 15.0%
!! AATTATAAATATATGCTGAA+AGG - chr6_1:30109967-30109986 Msa0881810:intron 15.0%
!! ATTATAAATATATGCTGAAA+GGG - chr6_1:30109968-30109987 Msa0881810:intron 15.0%
!! AATTGGTATTGTATATTTAA+TGG + chr6_1:30110440-30110459 None:intergenic 15.0%
!! TAAAAATGTCATTAACATTA+GGG - chr6_1:30110671-30110690 Msa0881810:intron 15.0%
!!! TATAACTTGTATGAATAATT+AGG - chr6_1:30111317-30111336 Msa0881810:intron 15.0%
!!! ATAACTTGTATGAATAATTA+GGG - chr6_1:30111318-30111337 Msa0881810:intron 15.0%
!! TGATTAAAAAGAGATAAAAT+TGG - chr6_1:30111400-30111419 Msa0881810:intron 15.0%
!!! ATTGACTTTTTATTTCTATT+TGG - chr6_1:30112287-30112306 Msa0881810:intron 15.0%
!!! TCTTTATGAAGAATTTTTTA+AGG - chr6_1:30112320-30112339 Msa0881810:intron 15.0%
!!! CTTTATGAAGAATTTTTTAA+GGG - chr6_1:30112321-30112340 Msa0881810:intron 15.0%
!! ATGAATATAAAGAAAAAGAA+CGG + chr6_1:30112440-30112459 None:intergenic 15.0%
!! AGAAATACACAATAATAAAA+TGG + chr6_1:30113105-30113124 None:intergenic 15.0%
!! ATTAAATTAATATTGCGAAA+CGG - chr6_1:30113458-30113477 Msa0881810:intron 15.0%
!! AAATGTTAATATTATGCTAA+GGG - chr6_1:30113562-30113581 Msa0881810:intron 15.0%
!!! TAAACATTACTCATATATTT+TGG - chr6_1:30114031-30114050 Msa0881810:intron 15.0%
!! ATAGAAAGAAAGAAAAAAAA+AGG + chr6_1:30114214-30114233 None:intergenic 15.0%
!!! ATTGTTAATATTGATCATTT+TGG - chr6_1:30115784-30115803 Msa0881810:intron 15.0%
!! AAACAGATATAACAAAATTA+TGG + chr6_1:30116504-30116523 None:intergenic 15.0%
!! AAAGAAAATGTAGTTTAAGA+TGG + chr6_1:30109479-30109498 None:intergenic 20.0%
!!! AAAAAATTTGCAGTATGTTT+TGG + chr6_1:30110148-30110167 None:intergenic 20.0%
!! TATTGTAGAATTATGATTGA+AGG + chr6_1:30110347-30110366 None:intergenic 20.0%
!!! AAGGGAATATTTTAGATAAT+TGG + chr6_1:30110457-30110476 None:intergenic 20.0%
!!! AATGTTAATGACATTTTTAC+CGG + chr6_1:30110670-30110689 None:intergenic 20.0%
!! GTAAAAATGTCATTAACATT+AGG - chr6_1:30110670-30110689 Msa0881810:intron 20.0%
!! AAAAATGTCATTAACATTAG+GGG - chr6_1:30110672-30110691 Msa0881810:intron 20.0%
!! ATGCAATATTTATTTAGCTA+AGG - chr6_1:30111003-30111022 Msa0881810:intron 20.0%
!! CTTAGAAATTATAATTTCTC+AGG - chr6_1:30111035-30111054 Msa0881810:intron 20.0%
!! GAATATGAAAAACCTATAAA+TGG - chr6_1:30111067-30111086 Msa0881810:intron 20.0%
!! GAAGTCTAATTTATATTACT+TGG - chr6_1:30111165-30111184 Msa0881810:intron 20.0%
!! TAATCACAAAATCATTTCAA+TGG + chr6_1:30111386-30111405 None:intergenic 20.0%
!!! AAAAGAGTATACTCAAATAA+AGG + chr6_1:30111677-30111696 None:intergenic 20.0%
!! TTACCTATTTAATCAAGATT+TGG + chr6_1:30111890-30111909 None:intergenic 20.0%
!!! ATTTTTGAGTAATTGATTGA+TGG + chr6_1:30112049-30112068 None:intergenic 20.0%
!! AATAGTGAAAATAACATAAC+AGG + chr6_1:30112402-30112421 None:intergenic 20.0%
!!! ATGATAAAAGATATTTTGCA+TGG + chr6_1:30112703-30112722 None:intergenic 20.0%
!!! ATCTTTTATCATGTCATTAT+TGG - chr6_1:30112711-30112730 Msa0881810:intron 20.0%
!!! TATGATGCTTAATTTTATTC+AGG - chr6_1:30112865-30112884 Msa0881810:intron 20.0%
!! CAAATGTTAATATTATGCTA+AGG - chr6_1:30113561-30113580 Msa0881810:intron 20.0%
!!! ATTTTGTTCTTATATCATTC+AGG + chr6_1:30113744-30113763 None:intergenic 20.0%
!! GTAGAGAGTTAATATAAATA+TGG + chr6_1:30113895-30113914 None:intergenic 20.0%
!!! ATGGATATGGATTATAAATA+TGG + chr6_1:30114128-30114147 None:intergenic 20.0%
!! AGAAAGAAAAAAAAAGGAAA+AGG + chr6_1:30114208-30114227 None:intergenic 20.0%
!!! TATATCACACATATTCTTTT+TGG + chr6_1:30115063-30115082 None:intergenic 20.0%
!! AAAAAGAATATGTGTGATAT+AGG - chr6_1:30115062-30115081 Msa0881810:intron 20.0%
!!! TTTTAAATCTGTTCTTCTTT+TGG + chr6_1:30115283-30115302 None:intergenic 20.0%
!!! TTATATTTTTGTGCTTTGTA+TGG + chr6_1:30115465-30115484 None:intergenic 20.0%
!! ATACAAAGCACAAAAATATA+AGG - chr6_1:30115464-30115483 Msa0881810:intron 20.0%
!! AATTCATTCTAATATTGATG+AGG - chr6_1:30115589-30115608 Msa0881810:CDS 20.0%
!! AATCCTATGACAAATTAAAA+TGG + chr6_1:30115657-30115676 None:intergenic 20.0%
!! ACAATAATGACATTATTAGT+AGG + chr6_1:30115769-30115788 None:intergenic 20.0%
!! ACATAATAATTACTCTCTAA+AGG + chr6_1:30115910-30115929 None:intergenic 20.0%
!! TAATGCTGATATACATTAAT+CGG - chr6_1:30116577-30116596 Msa0881810:intron 20.0%
!!! TTAAAAGAGTGTTTATATGT+TGG - chr6_1:30116759-30116778 Msa0881810:CDS 20.0%
!!! TAAAAGAGTGTTTATATGTT+GGG - chr6_1:30116760-30116779 Msa0881810:CDS 20.0%
!! ACTTAACAACAAATAATTAG+TGG - chr6_1:30116935-30116954 Msa0881810:intron 20.0%
! AAACCTATATGATCTAATGT+TGG - chr6_1:30109629-30109648 Msa0881810:intron 25.0%
! AAACCAACATTAGATCATAT+AGG + chr6_1:30109635-30109654 None:intergenic 25.0%
! CATGTTTGTGTTAGTAATAT+AGG - chr6_1:30109860-30109879 Msa0881810:CDS 25.0%
! ATAATTATGACTTCCTAAAG+CGG + chr6_1:30109953-30109972 None:intergenic 25.0%
! ATTATTCGCATTATCATTAG+TGG - chr6_1:30110752-30110771 Msa0881810:intron 25.0%
! TATGAAAAACCTATAAATGG+TGG - chr6_1:30111070-30111089 Msa0881810:intron 25.0%
! TTATAACTTCCACCATTTAT+AGG + chr6_1:30111082-30111101 None:intergenic 25.0%
! TGGAAGTTATAAAAATGCTA+CGG - chr6_1:30111090-30111109 Msa0881810:intron 25.0%
!! TTATTTGAATTGCTAGTTTG+AGG - chr6_1:30111251-30111270 Msa0881810:intron 25.0%
! AACAAATTATGCTCTTATGT+TGG - chr6_1:30111293-30111312 Msa0881810:intron 25.0%
!! ATTTCAATGGTTTTCTATGA+AGG + chr6_1:30111373-30111392 None:intergenic 25.0%
!!! AAAAGAGTATCTCTCAAAAA+AGG - chr6_1:30111461-30111480 Msa0881810:intron 25.0%
!!! AAAGAGTATCTCTCAAAAAA+GGG - chr6_1:30111462-30111481 Msa0881810:intron 25.0%
! TATCTCTGTAGTATAAATAG+TGG - chr6_1:30111562-30111581 Msa0881810:intron 25.0%
! TAATACCATCTCATATTTGA+TGG - chr6_1:30111594-30111613 Msa0881810:intron 25.0%
!!! AAGTTTTAGAGTTTTATTGC+AGG - chr6_1:30111758-30111777 Msa0881810:intron 25.0%
!!! AGTTTTAGAGTTTTATTGCA+GGG - chr6_1:30111759-30111778 Msa0881810:intron 25.0%
! TTGCAGGGAATAAAATTAAA+AGG - chr6_1:30111774-30111793 Msa0881810:intron 25.0%
!!! AAGGTAATGATTTTGAGTTA+TGG - chr6_1:30111793-30111812 Msa0881810:intron 25.0%
! ACTCCAAATCTTGATTAAAT+AGG - chr6_1:30111884-30111903 Msa0881810:intron 25.0%
! TATTCATATGTAATCTTGTC+TGG - chr6_1:30112453-30112472 Msa0881810:intron 25.0%
! GATATTGGTAAAGCATATAA+CGG - chr6_1:30112636-30112655 Msa0881810:intron 25.0%
!!! AATAATATGAGGTCATTTTC+AGG - chr6_1:30113045-30113064 Msa0881810:intron 25.0%
!! AACAAATCTTTTTCTGTCAT+CGG + chr6_1:30113224-30113243 None:intergenic 25.0%
! TTAGATGTCAAGAGAAATAT+TGG + chr6_1:30113336-30113355 None:intergenic 25.0%
! AATATTTCTCTTGACATCTA+AGG - chr6_1:30113335-30113354 Msa0881810:intron 25.0%
!!! AATACTTTAAGATGTACCTT+GGG + chr6_1:30113425-30113444 None:intergenic 25.0%
! TTAATTTAATGTCGAGGAAA+AGG + chr6_1:30113448-30113467 None:intergenic 25.0%
! GCAATATTAATTTAATGTCG+AGG + chr6_1:30113454-30113473 None:intergenic 25.0%
! TAAGGGTGAGAATTAATTAT+TGG - chr6_1:30113579-30113598 Msa0881810:intron 25.0%
! TTATGATTCATGAGAATAGT+TGG + chr6_1:30113929-30113948 None:intergenic 25.0%
! TATAATGCACTAGTAACTAA+AGG + chr6_1:30114103-30114122 None:intergenic 25.0%
! AGAAAAAAAAAGGAAAAGGA+GGG + chr6_1:30114204-30114223 None:intergenic 25.0%
! AAGAAAAAAAAAGGAAAAGG+AGG + chr6_1:30114205-30114224 None:intergenic 25.0%
! ATTATTGTTGAGGAAAATCA+CGG + chr6_1:30114495-30114514 None:intergenic 25.0%
! TAATCTCTACTTCTTGTATT+TGG - chr6_1:30114529-30114548 Msa0881810:intron 25.0%
!! CAAACAAACCATGAATATTT+TGG + chr6_1:30114850-30114869 None:intergenic 25.0%
! GAAGACTTATCATAATTGTT+TGG + chr6_1:30115093-30115112 None:intergenic 25.0%
! AAGCACAAAAATATAAGGTA+TGG - chr6_1:30115469-30115488 Msa0881810:intron 25.0%
! ACAAAAATATAAGGTATGGT+AGG - chr6_1:30115473-30115492 Msa0881810:intron 25.0%
! CAAAAATATAAGGTATGGTA+GGG - chr6_1:30115474-30115493 Msa0881810:intron 25.0%
! ATTCTAATATTGATGAGGTT+AGG - chr6_1:30115594-30115613 Msa0881810:CDS 25.0%
!! ATAATTACTCTCTAAAGGAA+GGG + chr6_1:30115905-30115924 None:intergenic 25.0%
!! AATAATTACTCTCTAAAGGA+AGG + chr6_1:30115906-30115925 None:intergenic 25.0%
! CTCTACAAAAACATTTGAAA+CGG + chr6_1:30116091-30116110 None:intergenic 25.0%
!! TTTGTAGAGTATCAATGTTA+TGG - chr6_1:30116102-30116121 Msa0881810:intron 25.0%
!!! ACATTTTTTGATTGAACTAC+AGG - chr6_1:30116142-30116161 Msa0881810:intron 25.0%
! ATTTGAATTTCGTGATGTTT+AGG - chr6_1:30116208-30116227 Msa0881810:intron 25.0%
!! AACTCAGTATTTTTCTTATC+AGG - chr6_1:30116277-30116296 Msa0881810:intron 25.0%
!! ATGCATAAAATCCTTCTTTT+GGG + chr6_1:30116423-30116442 None:intergenic 25.0%
!! TTGAAATTCTGTTTTCTCAT+AGG - chr6_1:30116674-30116693 Msa0881810:intron 25.0%
TGTTACAGTTATGTACTATC+TGG + chr6_1:30109453-30109472 None:intergenic 30.0%
AAGAATACCTTTGTCCTAAA+GGG + chr6_1:30109507-30109526 None:intergenic 30.0%
!! TATTTTCTAAAAGGGGAAGA+TGG + chr6_1:30109669-30109688 None:intergenic 30.0%
GTTAGTAATATAGGCAGTTA+CGG - chr6_1:30109869-30109888 Msa0881810:CDS 30.0%
AATATATGCTGAAAGGGAAA+AGG - chr6_1:30109974-30109993 Msa0881810:intron 30.0%
ATATATGCTGAAAGGGAAAA+GGG - chr6_1:30109975-30109994 Msa0881810:intron 30.0%
!!! TTTGTATGTTGGTTTGGTTT+TGG - chr6_1:30110016-30110035 Msa0881810:intron 30.0%
! AAACTACTCTAGGAATTATG+AGG + chr6_1:30110245-30110264 None:intergenic 30.0%
ACTGTTACAAAAACTACTCT+AGG + chr6_1:30110255-30110274 None:intergenic 30.0%
AGTAAGTAATAGACAAGGAA+TGG + chr6_1:30110382-30110401 None:intergenic 30.0%
ATTCCTTGTCTATTACTTAC+TGG - chr6_1:30110381-30110400 Msa0881810:intron 30.0%
TCATGTTGCTCATATATATG+TGG - chr6_1:30110566-30110585 Msa0881810:intron 30.0%
! ATGATAATGCGAATAATGCT+GGG + chr6_1:30110749-30110768 None:intergenic 30.0%
! AATGATAATGCGAATAATGC+TGG + chr6_1:30110750-30110769 None:intergenic 30.0%
!!! CTAGTATATGTATTTTAGCC+TGG - chr6_1:30110836-30110855 Msa0881810:intron 30.0%
TATTTCTTCATCTACATCAG+AGG - chr6_1:30111126-30111145 Msa0881810:intron 30.0%
TATTACTTGGACTATGACTT+TGG - chr6_1:30111178-30111197 Msa0881810:intron 30.0%
!! AGCATAATTTGTTCTCCAAA+AGG + chr6_1:30111286-30111305 None:intergenic 30.0%
!! CTGGACACAAATTTTAATAG+CGG - chr6_1:30111634-30111653 Msa0881810:intron 30.0%
!! CTCTTTTAGCTGTCTTTATA+CGG - chr6_1:30111690-30111709 Msa0881810:intron 30.0%
GTTAGTGTAAACAATGTTTG+TGG + chr6_1:30111859-30111878 None:intergenic 30.0%
! CTTATCATAGAGTGTTACAT+AGG + chr6_1:30111983-30112002 None:intergenic 30.0%
TACAGAACACTAGAAGTTAT+GGG + chr6_1:30112020-30112039 None:intergenic 30.0%
TTACAGAACACTAGAAGTTA+TGG + chr6_1:30112021-30112040 None:intergenic 30.0%
TTCATACGTCTCAAAAAGTA+AGG + chr6_1:30112133-30112152 None:intergenic 30.0%
AGAAAAGAGAAATCGTTGTA+TGG - chr6_1:30112185-30112204 Msa0881810:intron 30.0%
!!! TAGTCAGTGTTATTTTCTGT+AGG - chr6_1:30112793-30112812 Msa0881810:intron 30.0%
AAACAGTTGAGCAAATGATT+GGG + chr6_1:30112959-30112978 None:intergenic 30.0%
! TGATGGTGAATTATTGTAGT+TGG - chr6_1:30112985-30113004 Msa0881810:CDS 30.0%
TGAATTATTGTAGTTGGACT+AGG - chr6_1:30112991-30113010 Msa0881810:CDS 30.0%
! TTTTATAGAATCGCTACCTA+TGG + chr6_1:30113021-30113040 None:intergenic 30.0%
CACAATAATAAAATGGTGCA+AGG + chr6_1:30113098-30113117 None:intergenic 30.0%
! CTATATGAGAGTTGATTCAA+AGG - chr6_1:30113123-30113142 Msa0881810:intron 30.0%
GGTTTCTGTTAATTGATTGT+AGG - chr6_1:30113144-30113163 Msa0881810:intron 30.0%
TCAAATTAGCAGTTAGACAA+TGG + chr6_1:30113283-30113302 None:intergenic 30.0%
! CTAACTGCTAATTTGATTTC+AGG - chr6_1:30113287-30113306 Msa0881810:intron 30.0%
!! GAATACTTTAAGATGTACCT+TGG + chr6_1:30113426-30113445 None:intergenic 30.0%
ATATTGCGAAACGGTATTAT+TGG - chr6_1:30113467-30113486 Msa0881810:CDS 30.0%
ACAATTCTTCACCAAAGAAA+GGG + chr6_1:30113655-30113674 None:intergenic 30.0%
AACAATTCTTCACCAAAGAA+AGG + chr6_1:30113656-30113675 None:intergenic 30.0%
!!! TGAGTTTTTTTTTCCTTGTG+TGG + chr6_1:30113702-30113721 None:intergenic 30.0%
TGCACAAATTGTAATTGAGA+GGG + chr6_1:30113773-30113792 None:intergenic 30.0%
TGGATAATTGTGTATCTTGA+GGG + chr6_1:30113813-30113832 None:intergenic 30.0%
TTGGATAATTGTGTATCTTG+AGG + chr6_1:30113814-30113833 None:intergenic 30.0%
! ACAACAACTCTAGTCTATTT+TGG + chr6_1:30113849-30113868 None:intergenic 30.0%
AAAATAGACTAGAGTTGTTG+TGG - chr6_1:30113848-30113867 Msa0881810:intron 30.0%
AAGAATTATGGTGATCAACA+TGG + chr6_1:30114070-30114089 None:intergenic 30.0%
TTATAGAGAAGATATTTGCG+CGG + chr6_1:30114383-30114402 None:intergenic 30.0%
! GTGATTTTCCTCAACAATAA+TGG - chr6_1:30114494-30114513 Msa0881810:intron 30.0%
CAAGAAGTAGAGATTAATGT+GGG + chr6_1:30114525-30114544 None:intergenic 30.0%
ACAAGAAGTAGAGATTAATG+TGG + chr6_1:30114526-30114545 None:intergenic 30.0%
ACTTCTTGTATTTGGATTGT+AGG - chr6_1:30114537-30114556 Msa0881810:intron 30.0%
! TGCAACTTTTGAATTTCCTT+CGG - chr6_1:30114626-30114645 Msa0881810:intron 30.0%
! TGGATTTAACTTTATCTGTG+AGG - chr6_1:30114744-30114763 Msa0881810:intron 30.0%
!!! ACGAATGATATTTTTTCCCA+AGG - chr6_1:30114796-30114815 Msa0881810:intron 30.0%
!! AAAACTTATGTTGGTTTGTG+GGG + chr6_1:30114968-30114987 None:intergenic 30.0%
!! GAAAACTTATGTTGGTTTGT+GGG + chr6_1:30114969-30114988 None:intergenic 30.0%
! TAAATCTGTTCTTCTTTTGG+AGG + chr6_1:30115280-30115299 None:intergenic 30.0%
GTAGATGATTAGATCATGTT+TGG + chr6_1:30115344-30115363 None:intergenic 30.0%
AAATGTTGGAAGAAATGTCT+TGG + chr6_1:30115387-30115406 None:intergenic 30.0%
GACATTTCTTCCAACATTTA+AGG - chr6_1:30115388-30115407 Msa0881810:CDS 30.0%
!! TGATATTTTAAACCTCGAAG+AGG + chr6_1:30115523-30115542 None:intergenic 30.0%
TAATATTGATGAGGTTAGGA+GGG - chr6_1:30115598-30115617 Msa0881810:CDS 30.0%
ATTAAAATGGCCCTTCATTA+TGG + chr6_1:30115644-30115663 None:intergenic 30.0%
! ATTTTGCTAAACATGCAACA+TGG - chr6_1:30115735-30115754 Msa0881810:intron 30.0%
!!! TTTTTTACTGTTGATTGCAC+AGG - chr6_1:30115853-30115872 Msa0881810:intron 30.0%
TTAAAAGACAGCAACACAAT+AGG + chr6_1:30115879-30115898 None:intergenic 30.0%
CTGTTGAAAACAGAAAATAG+TGG + chr6_1:30115946-30115965 None:intergenic 30.0%
AGAAAACATCTATAGAAAGC+AGG - chr6_1:30116056-30116075 Msa0881810:intron 30.0%
!!! TACAGGTGCAAAATTTTTTG+TGG - chr6_1:30116159-30116178 Msa0881810:intron 30.0%
!!! GTGCAAAATTTTTTGTGGTT+TGG - chr6_1:30116164-30116183 Msa0881810:intron 30.0%
! GATGCATAAAATCCTTCTTT+TGG + chr6_1:30116424-30116443 None:intergenic 30.0%
ATCAGCATTAGCAAAAACAA+AGG + chr6_1:30116567-30116586 None:intergenic 30.0%
!! ATCGGTGCTTTACATTATTT+TGG - chr6_1:30116595-30116614 Msa0881810:intron 30.0%
ACAGAATTTCAATTGTGAGA+TGG + chr6_1:30116666-30116685 None:intergenic 30.0%
! AAATTCTGTTTTCTCATAGG+AGG - chr6_1:30116677-30116696 Msa0881810:intron 30.0%
! AAGGTAATGGTTTATGAACA+TGG - chr6_1:30116907-30116926 Msa0881810:intron 30.0%
AGTTATGTACTATCTGGAAG+TGG + chr6_1:30109447-30109466 None:intergenic 35.0%
! ATTTTCTTTTGCCTCCCTTT+AGG - chr6_1:30109490-30109509 Msa0881810:intron 35.0%
GAAGAATACCTTTGTCCTAA+AGG + chr6_1:30109508-30109527 None:intergenic 35.0%
!! CTAAGGACTTGGTATTTTTG+CGG + chr6_1:30109550-30109569 None:intergenic 35.0%
AAAAATACCAAGTCCTTAGG+TGG - chr6_1:30109551-30109570 Msa0881810:intron 35.0%
AAAATACCAAGTCCTTAGGT+GGG - chr6_1:30109552-30109571 Msa0881810:intron 35.0%
ATGCTTGATGAGGTAAGAAT+TGG - chr6_1:30109593-30109612 Msa0881810:intron 35.0%
TGCTTGATGAGGTAAGAATT+GGG - chr6_1:30109594-30109613 Msa0881810:intron 35.0%
CTTGGAGGAAAAAATTGATG+TGG - chr6_1:30109750-30109769 Msa0881810:intron 35.0%
ACAGAACTTGAACTTTGACA+TGG - chr6_1:30109816-30109835 Msa0881810:intron 35.0%
TAACACAAACATGTCAGAGA+AGG + chr6_1:30109853-30109872 None:intergenic 35.0%
!! AGGTGTTTTGTATGTTGGTT+TGG - chr6_1:30110010-30110029 Msa0881810:intron 35.0%
GATTAGGCTCTATAATTCCT+AGG - chr6_1:30110042-30110061 Msa0881810:intron 35.0%
!! AAATCAGTTTGCTATGCATC+GGG + chr6_1:30110098-30110117 None:intergenic 35.0%
!! GAAATCAGTTTGCTATGCAT+CGG + chr6_1:30110099-30110118 None:intergenic 35.0%
! GCATAGCAAACTGATTTCAT+TGG - chr6_1:30110101-30110120 Msa0881810:intron 35.0%
!!! TATGTTTTGGCCAGAAAACA+CGG + chr6_1:30110135-30110154 None:intergenic 35.0%
GTAATAGACAAGGAATGGAA+TGG + chr6_1:30110377-30110396 None:intergenic 35.0%
CATCCAGTAAGTAATAGACA+AGG + chr6_1:30110387-30110406 None:intergenic 35.0%
CTTGTCTATTACTTACTGGA+TGG - chr6_1:30110385-30110404 Msa0881810:intron 35.0%
ATGGATGTTATCACTCAGAT+TGG - chr6_1:30110404-30110423 Msa0881810:intron 35.0%
TGGATGTTATCACTCAGATT+GGG - chr6_1:30110405-30110424 Msa0881810:intron 35.0%
!! TGCTGGTTCTTTCTGTTAAA+GGG + chr6_1:30110475-30110494 None:intergenic 35.0%
ATTTACTTCTCTGAGTGCTT+GGG + chr6_1:30110712-30110731 None:intergenic 35.0%
!!! ACCTTGAGTTTATTTTGCAG+TGG + chr6_1:30110782-30110801 None:intergenic 35.0%
CAAAACAAAGCATATACACC+AGG + chr6_1:30110857-30110876 None:intergenic 35.0%
ATAAGACTAGACTCAAGGTT+GGG - chr6_1:30111206-30111225 Msa0881810:intron 35.0%
CTATGAAGGTTCAAAGTGTA+GGG + chr6_1:30111359-30111378 None:intergenic 35.0%
TCTATGAAGGTTCAAAGTGT+AGG + chr6_1:30111360-30111379 None:intergenic 35.0%
AGCAACCATCAAATATGAGA+TGG + chr6_1:30111602-30111621 None:intergenic 35.0%
! GGTTGCTCTTTTTAACATTC+TGG - chr6_1:30111615-30111634 Msa0881810:intron 35.0%
ACGTTCAAAATGTTCAGTCA+AGG + chr6_1:30111733-30111752 None:intergenic 35.0%
TTCTATTGAGAAAGGAAGAG+TGG + chr6_1:30112091-30112110 None:intergenic 35.0%
TCCTTTCTCAATAGAAGCTA+AGG - chr6_1:30112095-30112114 Msa0881810:intron 35.0%
CCTTTCTCAATAGAAGCTAA+GGG - chr6_1:30112096-30112115 Msa0881810:intron 35.0%
!! AGCATTTAAAAAAGCACCAC+TGG - chr6_1:30112359-30112378 Msa0881810:intron 35.0%
TATGTAATCTTGTCTGGCTA+TGG - chr6_1:30112459-30112478 Msa0881810:intron 35.0%
GGTTAATGTTGCAGAGATAT+TGG - chr6_1:30112621-30112640 Msa0881810:intron 35.0%
GAAACAGTTGAGCAAATGAT+TGG + chr6_1:30112960-30112979 None:intergenic 35.0%
ATCATTTGCTCAACTGTTTC+TGG - chr6_1:30112960-30112979 Msa0881810:CDS 35.0%
!! AATATGAGGTCATTTTCAGG+TGG - chr6_1:30113048-30113067 Msa0881810:intron 35.0%
TAGGAATGCATAACTTCCAA+AGG - chr6_1:30113163-30113182 Msa0881810:intron 35.0%
TCGTAAAAAGTCGTAACCTT+TGG + chr6_1:30113182-30113201 None:intergenic 35.0%
! AGGTTACGACTTTTTACGAA+TGG - chr6_1:30113183-30113202 Msa0881810:intron 35.0%
! TACGACTTTTTACGAATGGA+TGG - chr6_1:30113187-30113206 Msa0881810:intron 35.0%
AATTAGCAGTTAGACAATGG+AGG + chr6_1:30113280-30113299 None:intergenic 35.0%
GATGTCAAGAGAAATATTGG+AGG + chr6_1:30113333-30113352 None:intergenic 35.0%
! TTTCTCTTGACATCTAAGGT+TGG - chr6_1:30113339-30113358 Msa0881810:intron 35.0%
TGATTGTAGTTGATCCTGAT+TGG - chr6_1:30113397-30113416 Msa0881810:intron 35.0%
!! AAAAGTTGGCTTGATAGTTC+AGG + chr6_1:30113629-30113648 None:intergenic 35.0%
CAAAGAAAGGGGAAAAAAGT+TGG + chr6_1:30113643-30113662 None:intergenic 35.0%
!!! CAACTTTTTTCCCCTTTCTT+TGG - chr6_1:30113641-30113660 Msa0881810:CDS 35.0%
CAATTCTTCACCAAAGAAAG+GGG + chr6_1:30113654-30113673 None:intergenic 35.0%
GTGCACAAATTGTAATTGAG+AGG + chr6_1:30113774-30113793 None:intergenic 35.0%
GATAATTGTGTATCTTGAGG+GGG + chr6_1:30113811-30113830 None:intergenic 35.0%
GGATAATTGTGTATCTTGAG+GGG + chr6_1:30113812-30113831 None:intergenic 35.0%
!!! CTAGTCTATTTTGGTGCATT+GGG + chr6_1:30113840-30113859 None:intergenic 35.0%
!!! TCTAGTCTATTTTGGTGCAT+TGG + chr6_1:30113841-30113860 None:intergenic 35.0%
! AATGTTTAGTGCCATTACTG+TGG + chr6_1:30114019-30114038 None:intergenic 35.0%
AATGCACTAGTAACTAAAGG+TGG + chr6_1:30114100-30114119 None:intergenic 35.0%
CAAACTTCACGTGATTTACA+GGG + chr6_1:30114336-30114355 None:intergenic 35.0%
TTCTTCCTTCCAGAGATAAA+TGG - chr6_1:30114700-30114719 Msa0881810:intron 35.0%
TCTTCCTTCCAGAGATAAAT+GGG - chr6_1:30114701-30114720 Msa0881810:intron 35.0%
AGATAAATGGGAAGCCTTTA+AGG - chr6_1:30114713-30114732 Msa0881810:intron 35.0%
ATATCATTCGTCCCATTAAC+AGG + chr6_1:30114787-30114806 None:intergenic 35.0%
! TTTCAGAAAACTTGCTCCTT+GGG + chr6_1:30114815-30114834 None:intergenic 35.0%
!! TTTTCAGAAAACTTGCTCCT+TGG + chr6_1:30114816-30114835 None:intergenic 35.0%
! TAACATCCTAGACGACTTTT+AGG - chr6_1:30114930-30114949 Msa0881810:intron 35.0%
!! GGAAAACTTATGTTGGTTTG+TGG + chr6_1:30114970-30114989 None:intergenic 35.0%
! GCTTAACTGTGGAGTTTTTA+TGG - chr6_1:30115028-30115047 Msa0881810:intron 35.0%
GACTGGAAAACCTTAAATGT+TGG + chr6_1:30115401-30115420 None:intergenic 35.0%
! ATTTTAAACCTCGAAGAGGA+GGG + chr6_1:30115519-30115538 None:intergenic 35.0%
!! TATTTTAAACCTCGAAGAGG+AGG + chr6_1:30115520-30115539 None:intergenic 35.0%
CTAATATTGATGAGGTTAGG+AGG - chr6_1:30115597-30115616 Msa0881810:CDS 35.0%
!!! GGGCCATTTTAATTTGTCAT+AGG - chr6_1:30115651-30115670 Msa0881810:intron 35.0%
TTTGACCAATACGATATGCT+CGG + chr6_1:30115990-30116009 None:intergenic 35.0%
! CATAAAATCCTTCTTTTGGG+AGG + chr6_1:30116420-30116439 None:intergenic 35.0%
TTTATGCATCTGTGACTCAA+CGG - chr6_1:30116434-30116453 Msa0881810:intron 35.0%
! ACAGAGTTTCTGAAAAGACA+AGG - chr6_1:30116806-30116825 Msa0881810:CDS 35.0%
AGGATGTAGTAACAAGGTAA+TGG - chr6_1:30116894-30116913 Msa0881810:intron 35.0%
AATACCTTTGTCCTAAAGGG+AGG + chr6_1:30109504-30109523 None:intergenic 40.0%
TTTGCGGACAGTATCATAAG+TGG + chr6_1:30109534-30109553 None:intergenic 40.0%
CGCAAAAATACCAAGTCCTT+AGG - chr6_1:30109548-30109567 Msa0881810:intron 40.0%
GCAGTTGGTTGAATAATGCT+TGG - chr6_1:30109732-30109751 Msa0881810:intron 40.0%
GTTGGTTGAATAATGCTTGG+AGG - chr6_1:30109735-30109754 Msa0881810:intron 40.0%
! TTGACACGAATTGGCTTCTA+TGG + chr6_1:30109792-30109811 None:intergenic 40.0%
TCTGTGTCTTTGACACGAAT+TGG + chr6_1:30109801-30109820 None:intergenic 40.0%
ATGTCAGAGAAGGACAAATG+TGG + chr6_1:30109843-30109862 None:intergenic 40.0%
AACTGCTTTGTAACCGCTTT+AGG - chr6_1:30109937-30109956 Msa0881810:intron 40.0%
! GGACTAGGTGTTTTGTATGT+TGG - chr6_1:30110005-30110024 Msa0881810:intron 40.0%
!!! GGTTTGGTTTTGGAGAGATT+AGG - chr6_1:30110026-30110045 Msa0881810:intron 40.0%
TGCTAGAACAAGCATTTCCT+AGG + chr6_1:30110062-30110081 None:intergenic 40.0%
!!! ATGTTTTGGCCAGAAAACAC+GGG + chr6_1:30110134-30110153 None:intergenic 40.0%
!! GTGCTGGTTCTTTCTGTTAA+AGG + chr6_1:30110476-30110495 None:intergenic 40.0%
CATTTACTTCTCTGAGTGCT+TGG + chr6_1:30110713-30110732 None:intergenic 40.0%
GCCACTGCAAAATAAACTCA+AGG - chr6_1:30110778-30110797 Msa0881810:intron 40.0%
TCAATCTGATAACTTCCTGC+AGG - chr6_1:30110910-30110929 Msa0881810:intron 40.0%
ATAACTTCCTGCAGGAATTG+TGG - chr6_1:30110918-30110937 Msa0881810:intron 40.0%
TAACTTCCTGCAGGAATTGT+GGG - chr6_1:30110919-30110938 Msa0881810:intron 40.0%
ACTTGGACTATGACTTTGGA+TGG - chr6_1:30111182-30111201 Msa0881810:intron 40.0%
ATGGCATAAGACTAGACTCA+AGG - chr6_1:30111201-30111220 Msa0881810:intron 40.0%
CATAAGACTAGACTCAAGGT+TGG - chr6_1:30111205-30111224 Msa0881810:intron 40.0%
TGGGAGGGTTTAAATTGTGT+AGG - chr6_1:30111225-30111244 Msa0881810:intron 40.0%
! TTGAGGAACGTATCACCTTT+TGG - chr6_1:30111268-30111287 Msa0881810:intron 40.0%
CCCTTAGCTTCTATTGAGAA+AGG + chr6_1:30112099-30112118 None:intergenic 40.0%
AGAAGCTAAGGGCTCATATT+CGG - chr6_1:30112107-30112126 Msa0881810:intron 40.0%
! TTTGAGACGTATGAAGAGTG+AGG - chr6_1:30112138-30112157 Msa0881810:intron 40.0%
CTAACCTGAACATCGTTCAA+TGG + chr6_1:30112214-30112233 None:intergenic 40.0%
!! CATAACAGGAAGTACCCAAA+TGG + chr6_1:30112388-30112407 None:intergenic 40.0%
TCTGCAACATTAACCTCATC+TGG + chr6_1:30112616-30112635 None:intergenic 40.0%
TAGGATAATTTGATCGCCGA+AGG - chr6_1:30112812-30112831 Msa0881810:intron 40.0%
AGGATAATTTGATCGCCGAA+GGG - chr6_1:30112813-30112832 Msa0881810:intron 40.0%
!! CTCAACTGTTTCTGGTTTGA+TGG - chr6_1:30112968-30112987 Msa0881810:CDS 40.0%
AAATGGTGCAAGGAATCATG+AGG + chr6_1:30113088-30113107 None:intergenic 40.0%
!! ACATCTAAGGTTGGTGGTAT+AGG - chr6_1:30113348-30113367 Msa0881810:intron 40.0%
! CCTTGTGTGGAGATTTTCTT+TGG + chr6_1:30113689-30113708 None:intergenic 40.0%
CCAAAGAAAATCTCCACACA+AGG - chr6_1:30113686-30113705 Msa0881810:CDS 40.0%
GGTGGACAAGGAAAGAATTA+TGG + chr6_1:30114082-30114101 None:intergenic 40.0%
CTAGTAACTAAAGGTGGACA+AGG + chr6_1:30114094-30114113 None:intergenic 40.0%
!! AGAGAGAGAGATGATGGATA+TGG + chr6_1:30114141-30114160 None:intergenic 40.0%
TCTCTCTCTCGTCATGAATT+TGG - chr6_1:30114300-30114319 Msa0881810:intron 40.0%
TTCACGTGATTTACAGGGTT+TGG + chr6_1:30114331-30114350 None:intergenic 40.0%
GCAAACTTCACGTGATTTAC+AGG + chr6_1:30114337-30114356 None:intergenic 40.0%
! AGATATTTGCGCGGATCTTT+TGG + chr6_1:30114374-30114393 None:intergenic 40.0%
TTGAGGAAAATCACGGTTTG+GGG + chr6_1:30114488-30114507 None:intergenic 40.0%
GTTGAGGAAAATCACGGTTT+GGG + chr6_1:30114489-30114508 None:intergenic 40.0%
TGTTGAGGAAAATCACGGTT+TGG + chr6_1:30114490-30114509 None:intergenic 40.0%
GGGTTCATCCATTATTGTTG+AGG + chr6_1:30114505-30114524 None:intergenic 40.0%
GGAAAGTTCATGCTGTCAAT+TGG + chr6_1:30114571-30114590 None:intergenic 40.0%
AGCGATAGCAGAAGAATAGT+AGG + chr6_1:30114592-30114611 None:intergenic 40.0%
AAAGGCTTCCCATTTATCTC+TGG + chr6_1:30114712-30114731 None:intergenic 40.0%
AATCCAAGCTGCATCCTTAA+AGG + chr6_1:30114730-30114749 None:intergenic 40.0%
ATTAACAGGTAGAGCTCCTT+CGG + chr6_1:30114773-30114792 None:intergenic 40.0%
AAGGAGCTCTACCTGTTAAT+GGG - chr6_1:30114773-30114792 Msa0881810:intron 40.0%
!! GAGCAAGTTTTCTGAAAACG+AGG - chr6_1:30114818-30114837 Msa0881810:intron 40.0%
GGCTAGCACCAAAATATTCA+TGG - chr6_1:30114839-30114858 Msa0881810:intron 40.0%
ACACGCTGGAAAACTTATGT+TGG + chr6_1:30114977-30114996 None:intergenic 40.0%
TGTTTGGACAAGCAACTGTT+AGG + chr6_1:30115328-30115347 None:intergenic 40.0%
TAGCAGTCAAAGATAGAGAC+TGG + chr6_1:30115418-30115437 None:intergenic 40.0%
! TTTTAAACCTCGAAGAGGAG+GGG + chr6_1:30115518-30115537 None:intergenic 40.0%
!! CAAAGAAGTGTCAAGTGGAA+TGG + chr6_1:30115555-30115574 None:intergenic 40.0%
TTCATTATGGACGTTCTGAC+AGG + chr6_1:30115631-30115650 None:intergenic 40.0%
TGTCAGAACGTCCATAATGA+AGG - chr6_1:30115630-30115649 Msa0881810:CDS 40.0%
GTCAGAACGTCCATAATGAA+GGG - chr6_1:30115631-30115650 Msa0881810:CDS 40.0%
GTGTATAGACTGATGACATG+CGG - chr6_1:30116024-30116043 Msa0881810:intron 40.0%
ATCTTCCATTCATTGCTTGC+AGG - chr6_1:30116375-30116394 Msa0881810:intron 40.0%
AAGATCCTGCAAGCAATGAA+TGG + chr6_1:30116383-30116402 None:intergenic 40.0%
TCATTGCTTGCAGGATCTTA+AGG - chr6_1:30116384-30116403 Msa0881810:intron 40.0%
! ATTTTCAGCCTCCCAAAAGA+AGG - chr6_1:30116409-30116428 Msa0881810:intron 40.0%
TTTCAGAAACTCTGTGTGCA+TGG + chr6_1:30116801-30116820 None:intergenic 40.0%
TCCTCAGGAAAATCTTGAAC+TGG + chr6_1:30116878-30116897 None:intergenic 40.0%
TTCCTGAGGATGTAGTAACA+AGG - chr6_1:30116888-30116907 Msa0881810:intron 40.0%
TACCTTGTTACTACATCCTC+AGG + chr6_1:30116893-30116912 None:intergenic 40.0%
TGCTTGATGCATTGAAGTGC+AGG + chr6_1:30109388-30109407 None:intergenic 45.0%
!! TTTGCCTCCCTTTAGGACAA+AGG - chr6_1:30109497-30109516 Msa0881810:intron 45.0%
GGAATACACGATGCTTGATG+AGG - chr6_1:30109583-30109602 Msa0881810:intron 45.0%
! AAGTTGGAAGTGTGTGCAGT+TGG - chr6_1:30109717-30109736 Msa0881810:intron 45.0%
! GGCTTGGTTGTTGTTGTTGT+AGG - chr6_1:30109910-30109929 Msa0881810:CDS 45.0%
TATGCTGAAAGGGAAAAGGG+AGG - chr6_1:30109978-30109997 Msa0881810:intron 45.0%
ATGCTGAAAGGGAAAAGGGA+GGG - chr6_1:30109979-30109998 Msa0881810:intron 45.0%
GCGTCGAAACTTAACGAAAG+AGG + chr6_1:30110171-30110190 None:intergenic 45.0%
!! CGACGCATGTAGTTTTGCAA+AGG - chr6_1:30110185-30110204 Msa0881810:intron 45.0%
AGGGCAGTTATGCAAATGAC+AGG + chr6_1:30110305-30110324 None:intergenic 45.0%
CATTTGCATAACTGCCCTGT+TGG - chr6_1:30110307-30110326 Msa0881810:CDS 45.0%
CCTGCTGTTATGTTCCAACA+GGG + chr6_1:30110324-30110343 None:intergenic 45.0%
CAGCAACAGACTGTTAGAAC+TGG + chr6_1:30110498-30110517 None:intergenic 45.0%
TTGACGAGTGAAGACAGTTG+TGG - chr6_1:30110523-30110542 Msa0881810:intron 45.0%
TGACGAGTGAAGACAGTTGT+GGG - chr6_1:30110524-30110543 Msa0881810:intron 45.0%
GAGTGCTTGGGTTCTTGATA+AGG + chr6_1:30110700-30110719 None:intergenic 45.0%
! AGTTGCTTGGTGACAGAGAA+TGG - chr6_1:30110966-30110985 Msa0881810:intron 45.0%
GCTTCCATTGAACGATGTTC+AGG - chr6_1:30112207-30112226 Msa0881810:intron 45.0%
GCACGCTTTGTCATTAGAAG+TGG + chr6_1:30112553-30112572 None:intergenic 45.0%
AATGACAAAGCGTGCAGATG+AGG - chr6_1:30112558-30112577 Msa0881810:intron 45.0%
!! GGTAAGCACTGATGTCATGT+AGG - chr6_1:30112732-30112751 Msa0881810:intron 45.0%
GATAAGTACCCTATGCCCTT+CGG + chr6_1:30112831-30112850 None:intergenic 45.0%
CAGTTGAGCAAATGATTGGG+TGG + chr6_1:30112956-30112975 None:intergenic 45.0%
! AGTTGGACTAGGATGTCCAT+AGG - chr6_1:30113002-30113021 Msa0881810:CDS 45.0%
CAGGATTTCCAAGATGTTGC+TGG - chr6_1:30113306-30113325 Msa0881810:intron 45.0%
! CTCTTGACATCTAAGGTTGG+TGG - chr6_1:30113342-30113361 Msa0881810:intron 45.0%
TTGATCCTGATTGGAACCCA+AGG - chr6_1:30113406-30113425 Msa0881810:intron 45.0%
ATGTACCTTGGGTTCCAATC+AGG + chr6_1:30113414-30113433 None:intergenic 45.0%
! TTGGCTTGATAGTTCAGGTG+GGG + chr6_1:30113624-30113643 None:intergenic 45.0%
!! GTTGGCTTGATAGTTCAGGT+GGG + chr6_1:30113625-30113644 None:intergenic 45.0%
!! AGTTGGCTTGATAGTTCAGG+TGG + chr6_1:30113626-30113645 None:intergenic 45.0%
!! ATTTTGGTGCATTGGGAGCT+TGG + chr6_1:30113833-30113852 None:intergenic 45.0%
GGAGAGTTTGCGAAGTCTAT+AGG + chr6_1:30113998-30114017 None:intergenic 45.0%
TCGCAAACTCTCCACAGTAA+TGG - chr6_1:30114005-30114024 Msa0881810:CDS 45.0%
AGAGAGAGAGAGAGAGATGA+TGG + chr6_1:30114147-30114166 None:intergenic 45.0%
GCTTCCCATTTATCTCTGGA+AGG + chr6_1:30114708-30114727 None:intergenic 45.0%
! AAGCCTTTAAGGATGCAGCT+TGG - chr6_1:30114724-30114743 Msa0881810:intron 45.0%
! TTTATCTGTGAGGTACCCGA+AGG - chr6_1:30114754-30114773 Msa0881810:intron 45.0%
TTAACAGGTAGAGCTCCTTC+GGG + chr6_1:30114772-30114791 None:intergenic 45.0%
GAAGGAGCTCTACCTGTTAA+TGG - chr6_1:30114772-30114791 Msa0881810:intron 45.0%
GGCAATCCTAAAAGTCGTCT+AGG + chr6_1:30114939-30114958 None:intergenic 45.0%
!! CTTGACTTGGAGCAACTTTG+GGG + chr6_1:30115005-30115024 None:intergenic 45.0%
!! GCTTGACTTGGAGCAACTTT+GGG + chr6_1:30115006-30115025 None:intergenic 45.0%
!! TGCTTGACTTGGAGCAACTT+TGG + chr6_1:30115007-30115026 None:intergenic 45.0%
ACAGTTAAGCGTGCTTGACT+TGG + chr6_1:30115018-30115037 None:intergenic 45.0%
AAGTCAAGCACGCTTAACTG+TGG - chr6_1:30115017-30115036 Msa0881810:intron 45.0%
CGAATCACATCGGAATGAGA+GGG + chr6_1:30115155-30115174 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG - chr6_1:30115153-30115172 Msa0881810:intron 45.0%
CTAGACGAACCGAATCACAT+CGG + chr6_1:30115165-30115184 None:intergenic 45.0%
ACTAAAGAGGGTAGGGACTA+GGG + chr6_1:30115237-30115256 None:intergenic 45.0%
GTAATGCCCGAGACTAAAGA+GGG + chr6_1:30115249-30115268 None:intergenic 45.0%
TGTAATGCCCGAGACTAAAG+AGG + chr6_1:30115250-30115269 None:intergenic 45.0%
!! ACGTGCAAAGAAGTGTCAAG+TGG + chr6_1:30115560-30115579 None:intergenic 45.0%
TTATGGACGTTCTGACAGGT+TGG + chr6_1:30115627-30115646 None:intergenic 45.0%
GTTGACCGAGCATATCGTAT+TGG - chr6_1:30115982-30116001 Msa0881810:intron 45.0%
GACTCAACGGCAATTCAATG+AGG - chr6_1:30116447-30116466 Msa0881810:intron 45.0%
CTGAAAAGACAAGGCATAGC+TGG - chr6_1:30116815-30116834 Msa0881810:CDS 45.0%
CCTTGGAAAACAGTAAGCTG+TGG + chr6_1:30116850-30116869 None:intergenic 45.0%
! CCACAGCTTACTGTTTTCCA+AGG - chr6_1:30116847-30116866 Msa0881810:intron 45.0%
!! ATCTTGAACTGGCTTTGCCT+TGG + chr6_1:30116867-30116886 None:intergenic 45.0%
! GCCAGTTCAAGATTTTCCTG+AGG - chr6_1:30116874-30116893 Msa0881810:intron 45.0%
!! AATGTTAAATATATTATAAA+AGG - chr6_1:30110625-30110644 Msa0881810:intron 5.0%
!!! TATAAAATTTTAATAATATG+AGG - chr6_1:30113034-30113053 Msa0881810:intron 5.0%
TGTAGTCCCACCTAAGGACT+TGG + chr6_1:30109561-30109580 None:intergenic 50.0%
AGTCCTTAGGTGGGACTACA+TGG - chr6_1:30109561-30109580 Msa0881810:intron 50.0%
GTCCTTAGGTGGGACTACAT+GGG - chr6_1:30109562-30109581 Msa0881810:intron 50.0%
TTCCCATGTAGTCCCACCTA+AGG + chr6_1:30109567-30109586 None:intergenic 50.0%
CGGTTGCACTTAGTGTCGTA+AGG - chr6_1:30109889-30109908 Msa0881810:CDS 50.0%
GCACTTAGTGTCGTAAGGCT+TGG - chr6_1:30109894-30109913 Msa0881810:CDS 50.0%
TGAAAGGGAAAAGGGAGGGA+GGG - chr6_1:30109983-30110002 Msa0881810:intron 50.0%
!! CAGTTTGCTATGCATCGGGA+AGG + chr6_1:30110094-30110113 None:intergenic 50.0%
! GGCATTCTACCCGTGTTTTC+TGG - chr6_1:30110122-30110141 Msa0881810:intron 50.0%
TCGTGAGTCAATTCCTTCGC+TGG - chr6_1:30110209-30110228 Msa0881810:intron 50.0%
!! AGGAGTGCTATATCCAGCGA+AGG + chr6_1:30110225-30110244 None:intergenic 50.0%
CCCTGTTGGAACATAACAGC+AGG - chr6_1:30110321-30110340 Msa0881810:CDS 50.0%
GCCTGCTGTTATGTTCCAAC+AGG + chr6_1:30110325-30110344 None:intergenic 50.0%
CAGACTGTTAGAACTGGTGC+TGG + chr6_1:30110492-30110511 None:intergenic 50.0%
ACAATGCCCACAATTCCTGC+AGG + chr6_1:30110928-30110947 None:intergenic 50.0%
CTCTGTCACCAAGCAACTCA+GGG + chr6_1:30110964-30110983 None:intergenic 50.0%
TCTCTGTCACCAAGCAACTC+AGG + chr6_1:30110965-30110984 None:intergenic 50.0%
AGACTAGACTCAAGGTTGGG+AGG - chr6_1:30111209-30111228 Msa0881810:intron 50.0%
GACTAGACTCAAGGTTGGGA+GGG - chr6_1:30111210-30111229 Msa0881810:intron 50.0%
GCAGATGAGGATGTGTTGGA+CGG - chr6_1:30112571-30112590 Msa0881810:intron 50.0%
CAGATGAGGATGTGTTGGAC+GGG - chr6_1:30112572-30112591 Msa0881810:intron 50.0%
CTCAATGCTCAAGCCAGATG+AGG - chr6_1:30112600-30112619 Msa0881810:intron 50.0%
! ATTTGATCGCCGAAGGGCAT+AGG - chr6_1:30112819-30112838 Msa0881810:intron 50.0%
! TTTGATCGCCGAAGGGCATA+GGG - chr6_1:30112820-30112839 Msa0881810:intron 50.0%
TTGGAGGTCCAGCAACATCT+TGG + chr6_1:30113317-30113336 None:intergenic 50.0%
! TGGCTTGATAGTTCAGGTGG+GGG + chr6_1:30113623-30113642 None:intergenic 50.0%
ACTCATGCAGCTTGAGTGAG+AGG + chr6_1:30114422-30114441 None:intergenic 50.0%
CAAAAGAGTCCTCACAGCCA+TGG - chr6_1:30114456-30114475 Msa0881810:intron 50.0%
TGAATTTCCTTCGGACAGCG+TGG - chr6_1:30114635-30114654 Msa0881810:intron 50.0%
GAATTTCCTTCGGACAGCGT+GGG - chr6_1:30114636-30114655 Msa0881810:intron 50.0%
AATTTCCTTCGGACAGCGTG+GGG - chr6_1:30114637-30114656 Msa0881810:intron 50.0%
!! TGTTGGTTTGTGGGGTCAGT+CGG + chr6_1:30114960-30114979 None:intergenic 50.0%
! ACTTTGGGGACAAAACACGC+TGG + chr6_1:30114991-30115010 None:intergenic 50.0%
GTATGGGACTACATGGTCGA+AGG + chr6_1:30115115-30115134 None:intergenic 50.0%
CATGTAGTCCCATACCTGCA+CGG - chr6_1:30115120-30115139 Msa0881810:intron 50.0%
TCGGAATGAGAGGGATCTTC+AGG + chr6_1:30115146-30115165 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG + chr6_1:30115156-30115175 None:intergenic 50.0%
! TCGGTTCGTCTAGAAGCTCT+CGG - chr6_1:30115172-30115191 Msa0881810:intron 50.0%
CATTGTCATGCCTTGTGCAC+CGG - chr6_1:30115203-30115222 Msa0881810:CDS 50.0%
GACTAAAGAGGGTAGGGACT+AGG + chr6_1:30115238-30115257 None:intergenic 50.0%
GTCCCTACCCTCTTTAGTCT+CGG - chr6_1:30115239-30115258 Msa0881810:CDS 50.0%
TCCCTACCCTCTTTAGTCTC+GGG - chr6_1:30115240-30115259 Msa0881810:CDS 50.0%
CTGAAAGGGAAAAGGGAGGG+AGG - chr6_1:30109982-30110001 Msa0881810:intron 55.0%
GAAAGGGAAAAGGGAGGGAG+GGG - chr6_1:30109984-30110003 Msa0881810:intron 55.0%
ATCTGCTGCCCTGAGTTGCT+TGG - chr6_1:30110953-30110972 Msa0881810:intron 55.0%
! AAGCACCACTGGCTGCCATT+TGG - chr6_1:30112370-30112389 Msa0881810:intron 55.0%
! AGCACCACTGGCTGCCATTT+GGG - chr6_1:30112371-30112390 Msa0881810:intron 55.0%
AGTACCCAAATGGCAGCCAG+TGG + chr6_1:30112378-30112397 None:intergenic 55.0%
GCGTGCAGATGAGGATGTGT+TGG - chr6_1:30112567-30112586 Msa0881810:intron 55.0%
TGAGGATGTGTTGGACGGGA+TGG - chr6_1:30112576-30112595 Msa0881810:intron 55.0%
ATAGTTCAGGTGGGGGAGTG+GGG + chr6_1:30113616-30113635 None:intergenic 55.0%
GATAGTTCAGGTGGGGGAGT+GGG + chr6_1:30113617-30113636 None:intergenic 55.0%
TGATAGTTCAGGTGGGGGAG+TGG + chr6_1:30113618-30113637 None:intergenic 55.0%
! ACGGTTTGGGGCTTCTTCCA+TGG + chr6_1:30114476-30114495 None:intergenic 55.0%
ATTTACCCCACGCTGTCCGA+AGG + chr6_1:30114645-30114664 None:intergenic 55.0%
CGTGCAGGTATGGGACTACA+TGG + chr6_1:30115122-30115141 None:intergenic 55.0%
TCTTCAGGCCGTGCAGGTAT+GGG + chr6_1:30115131-30115150 None:intergenic 55.0%
ATCTTCAGGCCGTGCAGGTA+TGG + chr6_1:30115132-30115151 None:intergenic 55.0%
CGGTTCGTCTAGAAGCTCTC+GGG - chr6_1:30115173-30115192 Msa0881810:intron 55.0%
GCCCGAGACTAAAGAGGGTA+GGG + chr6_1:30115244-30115263 None:intergenic 55.0%
TGCCCGAGACTAAAGAGGGT+AGG + chr6_1:30115245-30115264 None:intergenic 55.0%
GAAAAGGGAGGGAGGGGACT+AGG - chr6_1:30109990-30110009 Msa0881810:intron 60.0%
TGGGGGAGTGGGGTATAAGG+AGG + chr6_1:30113606-30113625 None:intergenic 60.0%
AGGTGGGGGAGTGGGGTATA+AGG + chr6_1:30113609-30113628 None:intergenic 60.0%
GGGCTTCTTCCATGGCTGTG+AGG + chr6_1:30114468-30114487 None:intergenic 60.0%
AGAGGGTAGGGACTAGGGAG+TGG + chr6_1:30115232-30115251 None:intergenic 60.0%
ACCTCGAAGAGGAGGGGACT+GGG + chr6_1:30115512-30115531 None:intergenic 60.0%
AACCTCGAAGAGGAGGGGAC+TGG + chr6_1:30115513-30115532 None:intergenic 60.0%
GAGGGATCTTCAGGCCGTGC+AGG + chr6_1:30115137-30115156 None:intergenic 65.0%
AGGGACTAGGGAGTGGTCGC+CGG + chr6_1:30115225-30115244 None:intergenic 65.0%
CCTCGAAGAGGAGGGGACTG+GGG + chr6_1:30115511-30115530 None:intergenic 65.0%
GGAGTGGTCGCCGGTGCACA+AGG + chr6_1:30115216-30115235 None:intergenic 70.0%
AGGAGGGGACTGGGGAGGCA+AGG + chr6_1:30115503-30115522 None:intergenic 70.0%
CGAAGAGGAGGGGACTGGGG+AGG + chr6_1:30115508-30115527 None:intergenic 70.0%
CCCCAGTCCCCTCCTCTTCG+AGG - chr6_1:30115508-30115527 Msa0881810:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 30109369 30116979 30109369 ID=Msa0881810;Name=Msa0881810
chr6_1 mRNA 30109369 30116979 30109369 ID=Msa0881810-mRNA-1;Parent=Msa0881810;Name=Msa0881810-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.84|0.71|0.85|0.92|0.85|14|0|410
chr6_1 exon 30116974 30116979 30116974 ID=Msa0881810-mRNA-1:exon:7497;Parent=Msa0881810-mRNA-1
chr6_1 exon 30116744 30116836 30116744 ID=Msa0881810-mRNA-1:exon:7496;Parent=Msa0881810-mRNA-1
chr6_1 exon 30115549 30115656 30115549 ID=Msa0881810-mRNA-1:exon:7495;Parent=Msa0881810-mRNA-1
chr6_1 exon 30115361 30115416 30115361 ID=Msa0881810-mRNA-1:exon:7494;Parent=Msa0881810-mRNA-1
chr6_1 exon 30115201 30115291 30115201 ID=Msa0881810-mRNA-1:exon:7493;Parent=Msa0881810-mRNA-1
chr6_1 exon 30114120 30114239 30114120 ID=Msa0881810-mRNA-1:exon:7492;Parent=Msa0881810-mRNA-1
chr6_1 exon 30113956 30114033 30113956 ID=Msa0881810-mRNA-1:exon:7491;Parent=Msa0881810-mRNA-1
chr6_1 exon 30113616 30113822 30113616 ID=Msa0881810-mRNA-1:exon:7490;Parent=Msa0881810-mRNA-1
chr6_1 exon 30113462 30113533 30113462 ID=Msa0881810-mRNA-1:exon:7489;Parent=Msa0881810-mRNA-1
chr6_1 exon 30112921 30113039 30112921 ID=Msa0881810-mRNA-1:exon:7488;Parent=Msa0881810-mRNA-1
chr6_1 exon 30110271 30110382 30110271 ID=Msa0881810-mRNA-1:exon:7487;Parent=Msa0881810-mRNA-1
chr6_1 exon 30110050 30110118 30110050 ID=Msa0881810-mRNA-1:exon:7486;Parent=Msa0881810-mRNA-1
chr6_1 exon 30109859 30109951 30109859 ID=Msa0881810-mRNA-1:exon:7485;Parent=Msa0881810-mRNA-1
chr6_1 exon 30109369 30109377 30109369 ID=Msa0881810-mRNA-1:exon:7484;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30116974 30116979 30116974 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30116744 30116836 30116744 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30115549 30115656 30115549 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30115361 30115416 30115361 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30115201 30115291 30115201 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30114120 30114239 30114120 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30113956 30114033 30113956 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30113616 30113822 30113616 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30113462 30113533 30113462 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30112921 30113039 30112921 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30110271 30110382 30110271 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30110050 30110118 30110050 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30109859 30109951 30109859 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
chr6_1 CDS 30109369 30109377 30109369 ID=Msa0881810-mRNA-1:cds;Parent=Msa0881810-mRNA-1
Gene Sequence

>Msa0881810

ATGAAAGACAAAGGTATTCTTCTCACCACTTATGATACTGTCCGCAAAAATACCAAGTCCTTAGGTGGGACTACATGGGAATACACGATGCTTGATGAGGGGCACCTTATCAAGAACCCAAGCACTCAGAGAAGTAAATGTTTTGATGAGATACCCAGCATTATTCGCATTATCATTAGTGGCACGCCACTGCAAAATAAACTCAAGGAATTGTGGGCATTGTATAATATCTGCTGCCCTGAGTTGCTTGGTGACAGAGAATGGTTCAAACGTGAATATGAAAAACCTATAAATGGTGGAAGTTATAAAAATGCTACGGACAGACAGAAGCGTATTTCTTCATCTACATCAGAGAAGCTAAGGGCTCATATTCGGCCTTACTTTTTGAGACGTATGAAGAGTGAGGTTTTCAATCAAGCAGAATTTTCTCAGAAAAGAGAAATCGTTGTATGGCTTCCATTGAACGATGTTCAGCGCTGTCTTTATGAAGAATTTTTTAAGGGTGCGATTGTTCTCTCAGCATTTAAAAAAGCACCACTGGCTGCCATTTGGATTTTGAAGAAAATATGTGATCATCCACTTCTAATGACAAAGCGTGCAGATGAGGATGTGTTGGACGGGATGGACTCAATGCTCAAGCCAGATGAGGTTAATGTTGCAGAGATATTGGTAAAGCATATAACGGATGTTGCAAAAACATATATGTTTAAAGATGAGAACGATGTACCATGCAAAATATCTTTTATCATGTCATTATTGGATAATTTGATCGCCGAAGGGCATAGGGTACTTATCTTTTCTCAGACTCGTATGATGCTTAATTTTATTCAGGATTTCCAAGATGTTGCTGGACCTCCAATATTTCTCTTGACATCTAAGGTTGGTGGTATAGGATTGACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTGATTGGAACCCAAGTACTGATAATCAATGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACTGTTGAAGAAAACATCTATAGAAAGCAGGTACATAAAGAAGCATTATTCAAAACAGCTACTGAACATAAAGAACAAACTCAGTATTTTTCTTATCAGGATCTTAAGGAGATTTTCAGCCTCCCAAAAGAAGGATTTTATGCATCTGTGACTCAACGGCAATTCAATGAGGAACATGATTATCAACATAAATTCATGTGA
Protein sequence

>Msa0881810

MKDKGILLTTYDTVRKNTKSLGGTTWEYTMLDEGHLIKNPSTQRSKCFDEIPSIIRIIISGTPLQNKLKELWALYNICCPELLGDREWFKREYEKPINGGSYKNATDRQKRISSSTSEKLRAHIRPYFLRRMKSEVFNQAEFSQKREIVVWLPLNDVQRCLYEEFFKGAIVLSAFKKAPLAAIWILKKICDHPLLMTKRADEDVLDGMDSMLKPDEVNVAEILVKHITDVAKTYMFKDENDVPCKISFIMSLLDNLIAEGHRVLIFSQTRMMLNFIQDFQDVAGPPIFLLTSKVGGIGLTLTRADRVIVVDPDWNPSTDNQCVDRAYRIGQKKDVIVYRLMTCGTVEENIYRKQVHKEALFKTATEHKEQTQYFSYQDLKEIFSLPKEGFYASVTQRQFNEEHDYQHKFM*