Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886080 | XP_013452015.1 | 71.988 | 332 | 77 | 4 | 1 | 321 | 1 | 327 | 1.17e-163 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886080 | sp|Q94BZ5|HSFA5_ARATH | 56.277 | 231 | 99 | 2 | 1 | 229 | 1 | 231 | 1.11e-82 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886080 | A0A072UAD0 | 71.988 | 332 | 77 | 4 | 1 | 321 | 1 | 327 | 5.61e-164 | 469 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886080 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886080 | MtrunA17_Chr6g0467041 | 71.988 | 332 | 77 | 4 | 1 | 321 | 1 | 327 | 1.08e-167 | 469 |
| Msa0886080 | MtrunA17_Chr8g0378061 | 76.531 | 294 | 30 | 4 | 23 | 277 | 23 | 316 | 8.92e-152 | 435 |
| Msa0886080 | MtrunA17_Chr8g0378061 | 78.261 | 46 | 10 | 0 | 278 | 323 | 412 | 457 | 1.59e-16 | 80.1 |
| Msa0886080 | MtrunA17_Chr2g0330821 | 56.383 | 282 | 100 | 4 | 5 | 269 | 65 | 340 | 3.37e-98 | 293 |
| Msa0886080 | MtrunA17_Chr2g0330841 | 54.661 | 236 | 67 | 5 | 82 | 277 | 41 | 276 | 3.95e-71 | 226 |
| Msa0886080 | MtrunA17_Chr8g0379701 | 37.190 | 363 | 158 | 9 | 15 | 319 | 5 | 355 | 3.59e-64 | 208 |
| Msa0886080 | MtrunA17_Chr5g0410881 | 51.185 | 211 | 89 | 4 | 22 | 218 | 32 | 242 | 6.74e-64 | 210 |
| Msa0886080 | MtrunA17_Chr4g0039891 | 45.455 | 209 | 102 | 3 | 20 | 216 | 10 | 218 | 5.38e-55 | 186 |
| Msa0886080 | MtrunA17_Chr1g0204741 | 43.498 | 223 | 109 | 6 | 7 | 215 | 20 | 239 | 2.05e-50 | 170 |
| Msa0886080 | MtrunA17_Chr7g0260331 | 45.894 | 207 | 102 | 4 | 19 | 215 | 46 | 252 | 2.16e-50 | 171 |
| Msa0886080 | MtrunA17_Chr3g0135831 | 43.137 | 204 | 110 | 3 | 19 | 217 | 43 | 245 | 4.24e-49 | 168 |
| Msa0886080 | MtrunA17_Chr1g0185131 | 40.930 | 215 | 115 | 3 | 22 | 231 | 32 | 239 | 3.74e-46 | 159 |
| Msa0886080 | MtrunA17_Chr4g0071051 | 45.161 | 186 | 98 | 2 | 19 | 203 | 98 | 280 | 2.02e-45 | 159 |
| Msa0886080 | MtrunA17_Chr3g0134031 | 67.647 | 102 | 33 | 0 | 12 | 113 | 14 | 115 | 5.94e-45 | 157 |
| Msa0886080 | MtrunA17_Chr8g0392001 | 48.205 | 195 | 88 | 6 | 20 | 201 | 20 | 214 | 2.76e-44 | 155 |
| Msa0886080 | MtrunA17_Chr6g0485571 | 40.654 | 214 | 100 | 2 | 20 | 219 | 9 | 209 | 3.92e-43 | 151 |
| Msa0886080 | MtrunA17_Chr5g0402291 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 8.12e-43 | 149 |
| Msa0886080 | MtrunA17_Chr5g0397881 | 61.111 | 108 | 42 | 0 | 6 | 113 | 8 | 115 | 2.73e-42 | 149 |
| Msa0886080 | MtrunA17_Chr5g0441531 | 69.892 | 93 | 28 | 0 | 21 | 113 | 24 | 116 | 5.60e-42 | 146 |
| Msa0886080 | MtrunA17_Chr2g0284481 | 59.259 | 108 | 44 | 0 | 12 | 119 | 5 | 112 | 1.47e-40 | 145 |
| Msa0886080 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 21 | 113 | 32 | 124 | 3.36e-38 | 138 |
| Msa0886080 | MtrunA17_Chr1g0203601 | 61.053 | 95 | 37 | 0 | 21 | 115 | 17 | 111 | 1.21e-37 | 136 |
| Msa0886080 | MtrunA17_Chr7g0257331 | 56.989 | 93 | 40 | 0 | 21 | 113 | 21 | 113 | 2.45e-36 | 130 |
| Msa0886080 | MtrunA17_Chr4g0047421 | 58.763 | 97 | 36 | 1 | 21 | 113 | 32 | 128 | 1.64e-34 | 125 |
| Msa0886080 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 21 | 113 | 8 | 100 | 2.86e-33 | 123 |
| Msa0886080 | MtrunA17_Chr1g0179321 | 62.903 | 62 | 23 | 0 | 20 | 81 | 47 | 108 | 2.51e-24 | 95.5 |
| Msa0886080 | MtrunA17_Chr4g0023771 | 62.319 | 69 | 25 | 1 | 12 | 79 | 4 | 72 | 8.04e-21 | 85.9 |
| Msa0886080 | MtrunA17_Chr1g0179311 | 30.189 | 159 | 100 | 4 | 61 | 216 | 1 | 151 | 4.67e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886080 | AT4G13980.1 | 56.277 | 231 | 99 | 2 | 1 | 229 | 1 | 231 | 1.13e-83 | 260 |
| Msa0886080 | AT4G17750.1 | 49.074 | 216 | 89 | 4 | 22 | 216 | 52 | 267 | 7.74e-60 | 199 |
| Msa0886080 | AT1G32330.2 | 47.234 | 235 | 105 | 5 | 1 | 216 | 16 | 250 | 4.81e-58 | 194 |
| Msa0886080 | AT1G32330.1 | 47.234 | 235 | 105 | 5 | 1 | 216 | 16 | 250 | 5.88e-58 | 194 |
| Msa0886080 | AT5G16820.1 | 47.345 | 226 | 101 | 6 | 20 | 228 | 25 | 249 | 1.21e-57 | 193 |
| Msa0886080 | AT5G16820.2 | 47.345 | 226 | 101 | 6 | 20 | 228 | 25 | 249 | 1.21e-57 | 193 |
| Msa0886080 | AT3G02990.1 | 42.918 | 233 | 120 | 4 | 8 | 228 | 9 | 240 | 1.25e-56 | 190 |
| Msa0886080 | AT4G18880.1 | 48.341 | 211 | 99 | 3 | 16 | 220 | 9 | 215 | 2.01e-51 | 175 |
| Msa0886080 | AT5G45710.3 | 34.451 | 328 | 168 | 6 | 14 | 319 | 5 | 307 | 1.55e-50 | 171 |
| Msa0886080 | AT5G45710.1 | 34.451 | 328 | 168 | 6 | 14 | 319 | 5 | 307 | 1.55e-50 | 171 |
| Msa0886080 | AT2G26150.1 | 43.961 | 207 | 108 | 4 | 19 | 217 | 41 | 247 | 2.12e-48 | 166 |
| Msa0886080 | AT2G26150.4 | 43.961 | 207 | 108 | 4 | 19 | 217 | 41 | 247 | 2.12e-48 | 166 |
| Msa0886080 | AT3G22830.1 | 40.741 | 216 | 115 | 3 | 19 | 221 | 58 | 273 | 2.30e-47 | 164 |
| Msa0886080 | AT5G03720.2 | 42.574 | 202 | 108 | 3 | 20 | 213 | 53 | 254 | 2.11e-46 | 162 |
| Msa0886080 | AT5G03720.1 | 42.574 | 202 | 108 | 3 | 20 | 213 | 53 | 254 | 2.11e-46 | 162 |
| Msa0886080 | AT3G24520.1 | 46.821 | 173 | 72 | 3 | 20 | 191 | 15 | 168 | 2.36e-45 | 157 |
| Msa0886080 | AT3G51910.1 | 37.872 | 235 | 124 | 6 | 3 | 226 | 5 | 228 | 1.25e-44 | 154 |
| Msa0886080 | AT1G46264.1 | 63.393 | 112 | 31 | 1 | 21 | 122 | 33 | 144 | 3.90e-44 | 154 |
| Msa0886080 | AT1G67970.1 | 44.792 | 192 | 93 | 5 | 20 | 201 | 17 | 205 | 5.40e-44 | 155 |
| Msa0886080 | AT5G43840.1 | 42.246 | 187 | 96 | 3 | 21 | 205 | 18 | 194 | 2.20e-41 | 145 |
| Msa0886080 | AT5G54070.1 | 40.952 | 210 | 113 | 3 | 20 | 223 | 69 | 273 | 3.19e-41 | 146 |
| Msa0886080 | AT3G63350.1 | 38.806 | 201 | 114 | 3 | 5 | 196 | 3 | 203 | 8.64e-40 | 141 |
| Msa0886080 | AT4G11660.1 | 62.000 | 100 | 38 | 0 | 14 | 113 | 51 | 150 | 9.02e-39 | 141 |
| Msa0886080 | AT4G36990.1 | 58.095 | 105 | 44 | 0 | 11 | 115 | 3 | 107 | 1.67e-38 | 138 |
| Msa0886080 | AT5G62020.1 | 49.580 | 119 | 59 | 1 | 1 | 118 | 1 | 119 | 1.14e-36 | 134 |
| Msa0886080 | AT2G41690.1 | 51.304 | 115 | 56 | 0 | 22 | 136 | 40 | 154 | 9.20e-36 | 130 |
| Msa0886080 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 22 | 109 | 146 | 233 | 3.81e-22 | 94.7 |
| Msa0886080 | AT4G18870.1 | 45.833 | 96 | 51 | 1 | 14 | 109 | 5 | 99 | 5.00e-22 | 94.4 |
| Msa0886080 | AT1G77570.1 | 42.391 | 92 | 49 | 3 | 19 | 106 | 22 | 113 | 2.11e-16 | 75.5 |
| Msa0886080 | AT2G26150.3 | 34.028 | 144 | 87 | 4 | 82 | 217 | 49 | 192 | 3.85e-15 | 75.1 |
| Msa0886080 | AT2G26150.2 | 34.028 | 144 | 87 | 4 | 82 | 217 | 49 | 192 | 3.85e-15 | 75.1 |
| Msa0886080 | AT4G19630.1 | 34.021 | 97 | 61 | 1 | 19 | 112 | 8 | 104 | 3.36e-13 | 66.2 |
Find 73 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_1:+44131046 | None:intergenic |
| TGCAGGCTTTCCTCATCTTC+AGG | 0.204361 | 6_1:+44130695 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_1:+44130982 | None:intergenic |
| GAAATTGTTGTGTTTGAAAT+AGG | 0.271924 | 6_1:+44132509 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.313501 | 6_1:-44130828 | Msa0886080:CDS |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6_1:-44132596 | Msa0886080:CDS |
| ACGGATTGAATGATGTGTTT+TGG | 0.333663 | 6_1:-44130538 | Msa0886080:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_1:-44132566 | Msa0886080:CDS |
| GCAGGCTTTCCTCATCTTCA+GGG | 0.373078 | 6_1:+44130696 | None:intergenic |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_1:+44132537 | None:intergenic |
| AGAACTGACCAAGCAATTAC+TGG | 0.383163 | 6_1:-44130632 | Msa0886080:CDS |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_1:+44130584 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_1:-44130795 | Msa0886080:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417304 | 6_1:+44130758 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.419735 | 6_1:+44130990 | None:intergenic |
| CTTTCTGACGGAGAACTGAT+AGG | 0.440803 | 6_1:-44130665 | Msa0886080:CDS |
| TTGTTGTGTTTGAAATAGGC+TGG | 0.446238 | 6_1:+44132513 | None:intergenic |
| TCTCAAGATAATTATAGCTT+AGG | 0.451761 | 6_1:+44130975 | None:intergenic |
| TTCCCACAAAATCGAATCCA+TGG | 0.458946 | 6_1:-44130834 | Msa0886080:CDS |
| GAGTTTATTTGAGATATCTT+CGG | 0.461136 | 6_1:+44130718 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_1:-44130808 | Msa0886080:CDS |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_1:-44131083 | Msa0886080:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_1:+44130561 | None:intergenic |
| AAAATCAGATCCTGATCGTT+GGG | 0.473476 | 6_1:-44131176 | Msa0886080:CDS |
| GCTAATCCAAAGGAGGCTTC+AGG | 0.474888 | 6_1:-44130590 | Msa0886080:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_1:+44131166 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.480417 | 6_1:+44130991 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_1:+44130817 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.482063 | 6_1:-44130759 | Msa0886080:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_1:-44131050 | Msa0886080:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_1:-44132661 | Msa0886080:CDS |
| TGAGACTGAAAAGCTTCAGC+TGG | 0.500611 | 6_1:-44130957 | Msa0886080:CDS |
| ATTAAGCTGACGGATGAAGC+TGG | 0.509640 | 6_1:+44132485 | None:intergenic |
| TTTGCAGAACTTCTTTGAGA+AGG | 0.509914 | 6_1:-44130888 | Msa0886080:CDS |
| GAACTGACCAAGCAATTACT+GGG | 0.527335 | 6_1:-44130631 | Msa0886080:CDS |
| TGGATTAACCAAGCTACCTT+CGG | 0.533584 | 6_1:+44130751 | None:intergenic |
| ATATCTTCGGCAATATTCCA+TGG | 0.535929 | 6_1:+44130731 | None:intergenic |
| TCAACGGCGATTGGATGGCA+TGG | 0.538918 | 6_1:-44130927 | Msa0886080:CDS |
| TACTAATGTGGCTAATCCAA+AGG | 0.539154 | 6_1:-44130600 | Msa0886080:CDS |
| GAAAATCAGATCCTGATCGT+TGG | 0.543561 | 6_1:-44131177 | Msa0886080:CDS |
| TCATACGTCTTCTGAAGAAA+CGG | 0.543831 | 6_1:+44132636 | None:intergenic |
| TTCTACTGTAGATCCAGAAA+GGG | 0.545124 | 6_1:-44131059 | Msa0886080:CDS |
| TCATCAGCCGCTGCTGCCGA+CGG | 0.546634 | 6_1:-44132678 | Msa0886080:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_1:-44130557 | Msa0886080:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_1:-44130562 | Msa0886080:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_1:+44131083 | None:intergenic |
| TCTGCTTCCGTCGGCAGCAG+CGG | 0.553780 | 6_1:+44132671 | None:intergenic |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.554788 | 6_1:-44132666 | Msa0886080:CDS |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_1:-44131082 | Msa0886080:CDS |
| GTTCTACTGTAGATCCAGAA+AGG | 0.564434 | 6_1:-44131060 | Msa0886080:CDS |
| AAGGTAGCTTGGTTAATCCA+TGG | 0.568191 | 6_1:-44130748 | Msa0886080:CDS |
| CGCACGCAGCCTGTTGCCGA+AGG | 0.572450 | 6_1:-44130767 | Msa0886080:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_1:+44131098 | None:intergenic |
| AAATAAACTCCCTGAAGATG+AGG | 0.580535 | 6_1:-44130705 | Msa0886080:CDS |
| AAGATGCCCCAGTAATTGCT+TGG | 0.581078 | 6_1:+44130624 | None:intergenic |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6_1:+44132599 | None:intergenic |
| GATTGGATGGCATGGAGAAG+AGG | 0.590608 | 6_1:-44130919 | Msa0886080:CDS |
| TCTTCATTGTCTGAACAGCA+TGG | 0.597736 | 6_1:+44130494 | None:intergenic |
| GCAGCGGCTGATGATGATTG+TGG | 0.600309 | 6_1:+44132687 | None:intergenic |
| TGTTGTGTTTGAAATAGGCT+GGG | 0.604915 | 6_1:+44132514 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_1:+44131088 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_1:+44132662 | None:intergenic |
| TTACATAGGTATTAAGCTGA+CGG | 0.626576 | 6_1:+44132475 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6_1:+44132600 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_1:+44132540 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.629396 | 6_1:+44132596 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_1:-44130492 | Msa0886080:CDS |
| TAATGTGGCTAATCCAAAGG+AGG | 0.646897 | 6_1:-44130597 | Msa0886080:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_1:+44132541 | None:intergenic |
| TCTTCAGAAGACGTATGACA+TGG | 0.665030 | 6_1:-44132631 | Msa0886080:CDS |
| TCTGGATCTACAGTAGAACC+CGG | 0.676402 | 6_1:+44131064 | None:intergenic |
| AACTGACCAAGCAATTACTG+GGG | 0.734160 | 6_1:-44130630 | Msa0886080:CDS |
| GGATCTACAGTAGAACCCGG+AGG | 0.764137 | 6_1:+44131067 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44132033-44132052 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44132033-44132052 | None:intergenic | 10.0% |
| !! | ATATTGAATTATATCATTGT+CGG | + | chr6_1:44131085-44131104 | None:intergenic | 15.0% |
| !! | AGAATTAAACAATAAAAATC+AGG | + | chr6_1:44131677-44131696 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44131945-44131964 | Msa0886080:intron | 15.0% |
| !! | ATATTGAATTATATCATTGT+CGG | + | chr6_1:44131085-44131104 | None:intergenic | 15.0% |
| !! | AGAATTAAACAATAAAAATC+AGG | + | chr6_1:44131677-44131696 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44131945-44131964 | Msa0886080:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44130817-44130836 | Msa0886080:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44130923-44130942 | Msa0886080:CDS | 20.0% |
| !! | TTATCATATTGATATAGTTC+AGG | + | chr6_1:44131356-44131375 | None:intergenic | 20.0% |
| !! | TCACAAATTTCATATACTTT+AGG | + | chr6_1:44131385-44131404 | None:intergenic | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | - | chr6_1:44131497-44131516 | Msa0886080:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | - | chr6_1:44131498-44131517 | Msa0886080:intron | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44132369-44132388 | Msa0886080:intron | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44130817-44130836 | Msa0886080:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44130923-44130942 | Msa0886080:CDS | 20.0% |
| !! | TTATCATATTGATATAGTTC+AGG | + | chr6_1:44131356-44131375 | None:intergenic | 20.0% |
| !! | TCACAAATTTCATATACTTT+AGG | + | chr6_1:44131385-44131404 | None:intergenic | 20.0% |
| !!! | ACTATTTATCATGTTTCTAT+AGG | - | chr6_1:44131497-44131516 | Msa0886080:intron | 20.0% |
| !!! | CTATTTATCATGTTTCTATA+GGG | - | chr6_1:44131498-44131517 | Msa0886080:intron | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44132369-44132388 | Msa0886080:intron | 20.0% |
| !! | GAAATTGTTGTGTTTGAAAT+AGG | + | chr6_1:44130671-44130690 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44130940-44130959 | Msa0886080:CDS | 25.0% |
| ! | ATTATTTCACTGAGTTTAGT+TGG | - | chr6_1:44130963-44130982 | Msa0886080:CDS | 25.0% |
| !!! | TGAGAAATTATAGTCTTGTA+TGG | - | chr6_1:44131026-44131045 | Msa0886080:CDS | 25.0% |
| ! | ATAATCATATATGTCGTTGT+CGG | - | chr6_1:44131103-44131122 | Msa0886080:CDS | 25.0% |
| ! | ATATTCAGACACTAAATTGA+TGG | + | chr6_1:44131312-44131331 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44131749-44131768 | Msa0886080:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44131750-44131769 | Msa0886080:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44131778-44131797 | Msa0886080:intron | 25.0% |
| ! | AATCGTTCAAAAAAGTTTGT+AGG | - | chr6_1:44131888-44131907 | Msa0886080:intron | 25.0% |
| ! | AAAAAAGTTTGTAGGTCTTA+TGG | - | chr6_1:44131896-44131915 | Msa0886080:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44132198-44132217 | None:intergenic | 25.0% |
| ! | TCTCAAGATAATTATAGCTT+AGG | + | chr6_1:44132205-44132224 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44132363-44132382 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | + | chr6_1:44132462-44132481 | None:intergenic | 25.0% |
| !! | GAAATTGTTGTGTTTGAAAT+AGG | + | chr6_1:44130671-44130690 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44130940-44130959 | Msa0886080:CDS | 25.0% |
| ! | ATTATTTCACTGAGTTTAGT+TGG | - | chr6_1:44130963-44130982 | Msa0886080:CDS | 25.0% |
| !!! | TGAGAAATTATAGTCTTGTA+TGG | - | chr6_1:44131026-44131045 | Msa0886080:CDS | 25.0% |
| ! | ATAATCATATATGTCGTTGT+CGG | - | chr6_1:44131103-44131122 | Msa0886080:CDS | 25.0% |
| ! | ATATTCAGACACTAAATTGA+TGG | + | chr6_1:44131312-44131331 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44131749-44131768 | Msa0886080:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44131750-44131769 | Msa0886080:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44131778-44131797 | Msa0886080:intron | 25.0% |
| ! | AATCGTTCAAAAAAGTTTGT+AGG | - | chr6_1:44131888-44131907 | Msa0886080:intron | 25.0% |
| ! | AAAAAAGTTTGTAGGTCTTA+TGG | - | chr6_1:44131896-44131915 | Msa0886080:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44132198-44132217 | None:intergenic | 25.0% |
| ! | TCTCAAGATAATTATAGCTT+AGG | + | chr6_1:44132205-44132224 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44132363-44132382 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | + | chr6_1:44132462-44132481 | None:intergenic | 25.0% |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44130611-44130630 | Msa0886080:CDS | 30.0% | |
| TTACATAGGTATTAAGCTGA+CGG | + | chr6_1:44130705-44130724 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44130719-44130738 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44130851-44130870 | Msa0886080:CDS | 30.0% | |
| !!! | TAGGTCTTAATTTTTGGTGT+GGG | - | chr6_1:44131172-44131191 | Msa0886080:CDS | 30.0% |
| AAAAAATTTCTGCAAGCATC+TGG | - | chr6_1:44131249-44131268 | Msa0886080:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44131323-44131342 | Msa0886080:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44131345-44131364 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | - | chr6_1:44131502-44131521 | Msa0886080:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | - | chr6_1:44131503-44131522 | Msa0886080:intron | 30.0% |
| TTGAGATAGGATGATAATTC+AGG | - | chr6_1:44131533-44131552 | Msa0886080:intron | 30.0% | |
| TGAGATAGGATGATAATTCA+GGG | - | chr6_1:44131534-44131553 | Msa0886080:intron | 30.0% | |
| TAATTCAGGGACTAAATTGA+TGG | - | chr6_1:44131547-44131566 | Msa0886080:intron | 30.0% | |
| TTATAGACGCAGTTTCTAAT+TGG | + | chr6_1:44131639-44131658 | None:intergenic | 30.0% | |
| CTTCATTACACAAAAACTTC+AGG | + | chr6_1:44131842-44131861 | None:intergenic | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44131971-44131990 | Msa0886080:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44131972-44131991 | Msa0886080:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44132049-44132068 | Msa0886080:intron | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44130611-44130630 | Msa0886080:CDS | 30.0% | |
| TTACATAGGTATTAAGCTGA+CGG | + | chr6_1:44130705-44130724 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44130719-44130738 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44130851-44130870 | Msa0886080:CDS | 30.0% | |
| !!! | TAGGTCTTAATTTTTGGTGT+GGG | - | chr6_1:44131172-44131191 | Msa0886080:CDS | 30.0% |
| AAAAAATTTCTGCAAGCATC+TGG | - | chr6_1:44131249-44131268 | Msa0886080:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44131323-44131342 | Msa0886080:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44131345-44131364 | None:intergenic | 30.0% | |
| ! | TTATCATGTTTCTATAGGGT+AGG | - | chr6_1:44131502-44131521 | Msa0886080:intron | 30.0% |
| ! | TATCATGTTTCTATAGGGTA+GGG | - | chr6_1:44131503-44131522 | Msa0886080:intron | 30.0% |
| TTGAGATAGGATGATAATTC+AGG | - | chr6_1:44131533-44131552 | Msa0886080:intron | 30.0% | |
| TGAGATAGGATGATAATTCA+GGG | - | chr6_1:44131534-44131553 | Msa0886080:intron | 30.0% | |
| TAATTCAGGGACTAAATTGA+TGG | - | chr6_1:44131547-44131566 | Msa0886080:intron | 30.0% | |
| TTATAGACGCAGTTTCTAAT+TGG | + | chr6_1:44131639-44131658 | None:intergenic | 30.0% | |
| CTTCATTACACAAAAACTTC+AGG | + | chr6_1:44131842-44131861 | None:intergenic | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44131971-44131990 | Msa0886080:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44131972-44131991 | Msa0886080:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44132049-44132068 | Msa0886080:intron | 30.0% | |
| ! | TCATACGTCTTCTGAAGAAA+CGG | + | chr6_1:44130544-44130563 | None:intergenic | 35.0% |
| !! | CGATGAAGCTTTTGTTATCA+GGG | + | chr6_1:44130609-44130628 | None:intergenic | 35.0% |
| !! | ACGATGAAGCTTTTGTTATC+AGG | + | chr6_1:44130610-44130629 | None:intergenic | 35.0% |
| ! | TGTTGTGTTTGAAATAGGCT+GGG | + | chr6_1:44130666-44130685 | None:intergenic | 35.0% |
| ! | TTGTTGTGTTTGAAATAGGC+TGG | + | chr6_1:44130667-44130686 | None:intergenic | 35.0% |
| AACCTGAGAATGTTGAAAGA+TGG | - | chr6_1:44131002-44131021 | Msa0886080:CDS | 35.0% | |
| ATCCATCTTTCAACATTCTC+AGG | + | chr6_1:44131007-44131026 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | chr6_1:44131165-44131184 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+TGG | - | chr6_1:44131166-44131185 | Msa0886080:CDS | 35.0% |
| !!! | GTAGGTCTTAATTTTTGGTG+TGG | - | chr6_1:44131171-44131190 | Msa0886080:CDS | 35.0% |
| ! | GTAGGGACTAAATTTGAGAT+AGG | - | chr6_1:44131520-44131539 | Msa0886080:intron | 35.0% |
| ACACATTCGTGAACTTCTTA+TGG | + | chr6_1:44131600-44131619 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44131830-44131849 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44132001-44132020 | Msa0886080:intron | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | - | chr6_1:44132118-44132137 | Msa0886080:intron | 35.0% | |
| ! | TTCAGCTGGAAGATTTTCAA+CGG | - | chr6_1:44132234-44132253 | Msa0886080:intron | 35.0% |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | - | chr6_1:44132289-44132308 | Msa0886080:intron | 35.0% |
| ! | ATCCATGGATTCGATTTTGT+GGG | + | chr6_1:44132348-44132367 | None:intergenic | 35.0% |
| ! | AATCCATGGATTCGATTTTG+TGG | + | chr6_1:44132349-44132368 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44132349-44132368 | Msa0886080:intron | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | + | chr6_1:44132449-44132468 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | - | chr6_1:44132472-44132491 | Msa0886080:intron | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | - | chr6_1:44132500-44132519 | Msa0886080:CDS | 35.0% | |
| TACTAATGTGGCTAATCCAA+AGG | - | chr6_1:44132577-44132596 | Msa0886080:CDS | 35.0% | |
| !! | ACGGATTGAATGATGTGTTT+TGG | - | chr6_1:44132639-44132658 | Msa0886080:CDS | 35.0% |
| ! | CGGATTGAATGATGTGTTTT+GGG | - | chr6_1:44132640-44132659 | Msa0886080:CDS | 35.0% |
| ! | TCATACGTCTTCTGAAGAAA+CGG | + | chr6_1:44130544-44130563 | None:intergenic | 35.0% |
| !! | CGATGAAGCTTTTGTTATCA+GGG | + | chr6_1:44130609-44130628 | None:intergenic | 35.0% |
| !! | ACGATGAAGCTTTTGTTATC+AGG | + | chr6_1:44130610-44130629 | None:intergenic | 35.0% |
| ! | TGTTGTGTTTGAAATAGGCT+GGG | + | chr6_1:44130666-44130685 | None:intergenic | 35.0% |
| ! | TTGTTGTGTTTGAAATAGGC+TGG | + | chr6_1:44130667-44130686 | None:intergenic | 35.0% |
| AACCTGAGAATGTTGAAAGA+TGG | - | chr6_1:44131002-44131021 | Msa0886080:CDS | 35.0% | |
| ATCCATCTTTCAACATTCTC+AGG | + | chr6_1:44131007-44131026 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | chr6_1:44131165-44131184 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+TGG | - | chr6_1:44131166-44131185 | Msa0886080:CDS | 35.0% |
| !!! | GTAGGTCTTAATTTTTGGTG+TGG | - | chr6_1:44131171-44131190 | Msa0886080:CDS | 35.0% |
| ! | GTAGGGACTAAATTTGAGAT+AGG | - | chr6_1:44131520-44131539 | Msa0886080:intron | 35.0% |
| ACACATTCGTGAACTTCTTA+TGG | + | chr6_1:44131600-44131619 | None:intergenic | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44131830-44131849 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44132001-44132020 | Msa0886080:intron | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | - | chr6_1:44132118-44132137 | Msa0886080:intron | 35.0% | |
| ! | TTCAGCTGGAAGATTTTCAA+CGG | - | chr6_1:44132234-44132253 | Msa0886080:intron | 35.0% |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | - | chr6_1:44132289-44132308 | Msa0886080:intron | 35.0% |
| ! | ATCCATGGATTCGATTTTGT+GGG | + | chr6_1:44132348-44132367 | None:intergenic | 35.0% |
| ! | AATCCATGGATTCGATTTTG+TGG | + | chr6_1:44132349-44132368 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44132349-44132368 | Msa0886080:intron | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | + | chr6_1:44132449-44132468 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | - | chr6_1:44132472-44132491 | Msa0886080:intron | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | - | chr6_1:44132500-44132519 | Msa0886080:CDS | 35.0% | |
| TACTAATGTGGCTAATCCAA+AGG | - | chr6_1:44132577-44132596 | Msa0886080:CDS | 35.0% | |
| !! | ACGGATTGAATGATGTGTTT+TGG | - | chr6_1:44132639-44132658 | Msa0886080:CDS | 35.0% |
| ! | CGGATTGAATGATGTGTTTT+GGG | - | chr6_1:44132640-44132659 | Msa0886080:CDS | 35.0% |
| TCTTCAGAAGACGTATGACA+TGG | - | chr6_1:44130546-44130565 | Msa0886080:CDS | 40.0% | |
| TCCTTAGATTAGGTGTGTCA+TGG | + | chr6_1:44131138-44131157 | None:intergenic | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | chr6_1:44131197-44131216 | Msa0886080:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44131265-44131284 | Msa0886080:intron | 40.0% |
| GTTCACGAATGTGTCATGAA+CGG | - | chr6_1:44131606-44131625 | Msa0886080:intron | 40.0% | |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44132000-44132019 | Msa0886080:intron | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | - | chr6_1:44132117-44132136 | Msa0886080:intron | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | + | chr6_1:44132189-44132208 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | + | chr6_1:44132190-44132209 | None:intergenic | 40.0% | |
| TTCCCACAAAATCGAATCCA+TGG | - | chr6_1:44132343-44132362 | Msa0886080:intron | 40.0% | |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44132382-44132401 | Msa0886080:intron | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | + | chr6_1:44132429-44132448 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | - | chr6_1:44132429-44132448 | Msa0886080:intron | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | + | chr6_1:44132502-44132521 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | - | chr6_1:44132545-44132564 | Msa0886080:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | - | chr6_1:44132546-44132565 | Msa0886080:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | - | chr6_1:44132547-44132566 | Msa0886080:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+TGG | - | chr6_1:44132565-44132584 | Msa0886080:CDS | 40.0% |
| TAATGTGGCTAATCCAAAGG+AGG | - | chr6_1:44132580-44132599 | Msa0886080:CDS | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | chr6_1:44132686-44132705 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | chr6_1:44132685-44132704 | Msa0886080:CDS | 40.0% | |
| TCTTCAGAAGACGTATGACA+TGG | - | chr6_1:44130546-44130565 | Msa0886080:CDS | 40.0% | |
| TCCTTAGATTAGGTGTGTCA+TGG | + | chr6_1:44131138-44131157 | None:intergenic | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | chr6_1:44131197-44131216 | Msa0886080:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44131265-44131284 | Msa0886080:intron | 40.0% |
| GTTCACGAATGTGTCATGAA+CGG | - | chr6_1:44131606-44131625 | Msa0886080:intron | 40.0% | |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44132000-44132019 | Msa0886080:intron | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | - | chr6_1:44132117-44132136 | Msa0886080:intron | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+GGG | + | chr6_1:44132189-44132208 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | + | chr6_1:44132190-44132209 | None:intergenic | 40.0% | |
| TTCCCACAAAATCGAATCCA+TGG | - | chr6_1:44132343-44132362 | Msa0886080:intron | 40.0% | |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44132382-44132401 | Msa0886080:intron | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | + | chr6_1:44132429-44132448 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | - | chr6_1:44132429-44132448 | Msa0886080:intron | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | + | chr6_1:44132502-44132521 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | - | chr6_1:44132545-44132564 | Msa0886080:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | - | chr6_1:44132546-44132565 | Msa0886080:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | - | chr6_1:44132547-44132566 | Msa0886080:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+TGG | - | chr6_1:44132565-44132584 | Msa0886080:CDS | 40.0% |
| TAATGTGGCTAATCCAAAGG+AGG | - | chr6_1:44132580-44132599 | Msa0886080:CDS | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | chr6_1:44132686-44132705 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | chr6_1:44132685-44132704 | Msa0886080:CDS | 40.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44130580-44130599 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44130581-44130600 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44130584-44130603 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44130581-44130600 | Msa0886080:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44130643-44130662 | None:intergenic | 45.0% | |
| ! | ATTAAGCTGACGGATGAAGC+TGG | + | chr6_1:44130695-44130714 | None:intergenic | 45.0% |
| GCCATGACACACCTAATCTA+AGG | - | chr6_1:44131134-44131153 | Msa0886080:CDS | 45.0% | |
| GCAAGGACACTCCTTAGATT+AGG | + | chr6_1:44131148-44131167 | None:intergenic | 45.0% | |
| ! | TTTGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44131184-44131203 | Msa0886080:CDS | 45.0% |
| TTCTGCAAGCATCTGGATCT+TGG | - | chr6_1:44131256-44131275 | Msa0886080:intron | 45.0% | |
| CGTACACATCTCAAGCATCT+AGG | - | chr6_1:44131701-44131720 | Msa0886080:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44131827-44131846 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44132082-44132101 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44132092-44132111 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | + | chr6_1:44132116-44132135 | None:intergenic | 45.0% | |
| TGAGACTGAAAAGCTTCAGC+TGG | - | chr6_1:44132220-44132239 | Msa0886080:intron | 45.0% | |
| ! | GGAAGATTTTCAACGGCGAT+TGG | - | chr6_1:44132241-44132260 | Msa0886080:intron | 45.0% |
| ! | GATTTTCAACGGCGATTGGA+TGG | - | chr6_1:44132245-44132264 | Msa0886080:intron | 45.0% |
| CTTTCTGACGGAGAACTGAT+AGG | - | chr6_1:44132512-44132531 | Msa0886080:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | + | chr6_1:44132556-44132575 | None:intergenic | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44130580-44130599 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44130581-44130600 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44130584-44130603 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44130581-44130600 | Msa0886080:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44130643-44130662 | None:intergenic | 45.0% | |
| ! | ATTAAGCTGACGGATGAAGC+TGG | + | chr6_1:44130695-44130714 | None:intergenic | 45.0% |
| GCCATGACACACCTAATCTA+AGG | - | chr6_1:44131134-44131153 | Msa0886080:CDS | 45.0% | |
| GCAAGGACACTCCTTAGATT+AGG | + | chr6_1:44131148-44131167 | None:intergenic | 45.0% | |
| ! | TTTGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44131184-44131203 | Msa0886080:CDS | 45.0% |
| TTCTGCAAGCATCTGGATCT+TGG | - | chr6_1:44131256-44131275 | Msa0886080:intron | 45.0% | |
| CGTACACATCTCAAGCATCT+AGG | - | chr6_1:44131701-44131720 | Msa0886080:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44131827-44131846 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44132082-44132101 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44132092-44132111 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | + | chr6_1:44132116-44132135 | None:intergenic | 45.0% | |
| TGAGACTGAAAAGCTTCAGC+TGG | - | chr6_1:44132220-44132239 | Msa0886080:intron | 45.0% | |
| ! | GGAAGATTTTCAACGGCGAT+TGG | - | chr6_1:44132241-44132260 | Msa0886080:intron | 45.0% |
| ! | GATTTTCAACGGCGATTGGA+TGG | - | chr6_1:44132245-44132264 | Msa0886080:intron | 45.0% |
| CTTTCTGACGGAGAACTGAT+AGG | - | chr6_1:44132512-44132531 | Msa0886080:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | + | chr6_1:44132556-44132575 | None:intergenic | 45.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44130518-44130537 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44130639-44130658 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44130640-44130659 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCATGGCGT+CGG | + | chr6_1:44131132-44131151 | None:intergenic | 50.0% | |
| !! | AAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44131153-44131172 | Msa0886080:CDS | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44131188-44131207 | Msa0886080:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44132014-44132033 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44132094-44132113 | Msa0886080:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44132095-44132114 | Msa0886080:intron | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44132127-44132146 | Msa0886080:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44132134-44132153 | None:intergenic | 50.0% | |
| GATTGGATGGCATGGAGAAG+AGG | - | chr6_1:44132258-44132277 | Msa0886080:intron | 50.0% | |
| GCAGGCTTTCCTCATCTTCA+GGG | + | chr6_1:44132484-44132503 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | + | chr6_1:44132485-44132504 | None:intergenic | 50.0% | |
| GCTAATCCAAAGGAGGCTTC+AGG | - | chr6_1:44132587-44132606 | Msa0886080:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | chr6_1:44132596-44132615 | None:intergenic | 50.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44130518-44130537 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44130639-44130658 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44130640-44130659 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCATGGCGT+CGG | + | chr6_1:44131132-44131151 | None:intergenic | 50.0% | |
| !! | AAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44131153-44131172 | Msa0886080:CDS | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44131188-44131207 | Msa0886080:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44132014-44132033 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44132094-44132113 | Msa0886080:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44132095-44132114 | Msa0886080:intron | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44132127-44132146 | Msa0886080:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44132134-44132153 | None:intergenic | 50.0% | |
| GATTGGATGGCATGGAGAAG+AGG | - | chr6_1:44132258-44132277 | Msa0886080:intron | 50.0% | |
| GCAGGCTTTCCTCATCTTCA+GGG | + | chr6_1:44132484-44132503 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | + | chr6_1:44132485-44132504 | None:intergenic | 50.0% | |
| GCTAATCCAAAGGAGGCTTC+AGG | - | chr6_1:44132587-44132606 | Msa0886080:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | chr6_1:44132596-44132615 | None:intergenic | 50.0% | |
| ! | GCAGCGGCTGATGATGATTG+TGG | + | chr6_1:44130493-44130512 | None:intergenic | 55.0% |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44130516-44130535 | Msa0886080:CDS | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44131187-44131206 | Msa0886080:CDS | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44131822-44131841 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44131823-44131842 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44131824-44131843 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44132097-44132116 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | + | chr6_1:44132113-44132132 | None:intergenic | 55.0% | |
| TCAACGGCGATTGGATGGCA+TGG | - | chr6_1:44132250-44132269 | Msa0886080:intron | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44132422-44132441 | None:intergenic | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44132615-44132634 | Msa0886080:CDS | 55.0% | |
| ! | GCAGCGGCTGATGATGATTG+TGG | + | chr6_1:44130493-44130512 | None:intergenic | 55.0% |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44130516-44130535 | Msa0886080:CDS | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44131187-44131206 | Msa0886080:CDS | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44131822-44131841 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44131823-44131842 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44131824-44131843 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44132097-44132116 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | + | chr6_1:44132113-44132132 | None:intergenic | 55.0% | |
| TCAACGGCGATTGGATGGCA+TGG | - | chr6_1:44132250-44132269 | Msa0886080:intron | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44132422-44132441 | None:intergenic | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44132615-44132634 | Msa0886080:CDS | 55.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44132418-44132437 | Msa0886080:intron | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44132418-44132437 | Msa0886080:intron | 60.0% | |
| TCATCAGCCGCTGCTGCCGA+CGG | - | chr6_1:44130499-44130518 | Msa0886080:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+CGG | + | chr6_1:44130509-44130528 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44130511-44130530 | Msa0886080:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44132619-44132638 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | chr6_1:44132620-44132639 | Msa0886080:CDS | 65.0% | |
| TCATCAGCCGCTGCTGCCGA+CGG | - | chr6_1:44130499-44130518 | Msa0886080:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+CGG | + | chr6_1:44130509-44130528 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44130511-44130530 | Msa0886080:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44132619-44132638 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | chr6_1:44132620-44132639 | Msa0886080:CDS | 65.0% | |
| CGCACGCAGCCTGTTGCCGA+AGG | - | chr6_1:44132410-44132429 | Msa0886080:intron | 70.0% | |
| CGCACGCAGCCTGTTGCCGA+AGG | - | chr6_1:44132410-44132429 | Msa0886080:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44130478 | 44132721 | 44130478 | ID=Msa0886080;Name=Msa0886080 |
| chr6_1 | mRNA | 44130478 | 44132721 | 44130478 | ID=Msa0886080-mRNA-1;Parent=Msa0886080;Name=Msa0886080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|323 |
| chr6_1 | exon | 44132479 | 44132721 | 44132479 | ID=Msa0886080-mRNA-1:exon:9488;Parent=Msa0886080-mRNA-1 |
| chr6_1 | exon | 44130478 | 44131206 | 44130478 | ID=Msa0886080-mRNA-1:exon:9487;Parent=Msa0886080-mRNA-1 |
| chr6_1 | CDS | 44132479 | 44132721 | 44132479 | ID=Msa0886080-mRNA-1:cds;Parent=Msa0886080-mRNA-1 |
| chr6_1 | CDS | 44130478 | 44131206 | 44130478 | ID=Msa0886080-mRNA-1:cds;Parent=Msa0886080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
