Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886100 | XP_013452015.1 | 83.537 | 164 | 27 | 0 | 19 | 182 | 1 | 164 | 2.30e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886100 | sp|Q94BZ5|HSFA5_ARATH | 63.226 | 155 | 56 | 1 | 19 | 172 | 1 | 155 | 3.91e-64 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886100 | A0A072UAD0 | 83.537 | 164 | 27 | 0 | 19 | 182 | 1 | 164 | 1.10e-96 | 292 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886100 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886100 | MtrunA17_Chr6g0467041 | 83.537 | 164 | 27 | 0 | 19 | 182 | 1 | 164 | 2.11e-100 | 292 |
| Msa0886100 | MtrunA17_Chr8g0378061 | 88.028 | 142 | 17 | 0 | 41 | 182 | 23 | 164 | 1.85e-91 | 275 |
| Msa0886100 | MtrunA17_Chr2g0330821 | 63.842 | 177 | 60 | 2 | 7 | 182 | 49 | 222 | 5.67e-75 | 229 |
| Msa0886100 | MtrunA17_Chr8g0379701 | 54.194 | 155 | 66 | 2 | 33 | 182 | 5 | 159 | 1.42e-53 | 175 |
| Msa0886100 | MtrunA17_Chr5g0410881 | 57.746 | 142 | 49 | 1 | 40 | 170 | 32 | 173 | 1.43e-53 | 177 |
| Msa0886100 | MtrunA17_Chr4g0039891 | 50.350 | 143 | 61 | 1 | 38 | 170 | 10 | 152 | 2.76e-47 | 160 |
| Msa0886100 | MtrunA17_Chr3g0134031 | 64.706 | 102 | 36 | 0 | 30 | 131 | 14 | 115 | 9.11e-45 | 151 |
| Msa0886100 | MtrunA17_Chr7g0260331 | 52.482 | 141 | 60 | 1 | 37 | 170 | 46 | 186 | 9.59e-45 | 151 |
| Msa0886100 | MtrunA17_Chr3g0135831 | 49.275 | 138 | 66 | 1 | 37 | 170 | 43 | 180 | 4.83e-44 | 150 |
| Msa0886100 | MtrunA17_Chr1g0204741 | 47.205 | 161 | 71 | 3 | 21 | 170 | 16 | 173 | 5.96e-44 | 148 |
| Msa0886100 | MtrunA17_Chr4g0071051 | 54.074 | 135 | 57 | 3 | 37 | 170 | 98 | 228 | 1.01e-42 | 147 |
| Msa0886100 | MtrunA17_Chr5g0441531 | 67.742 | 93 | 30 | 0 | 39 | 131 | 24 | 116 | 1.61e-42 | 142 |
| Msa0886100 | MtrunA17_Chr5g0402291 | 59.434 | 106 | 43 | 0 | 35 | 140 | 4 | 109 | 2.05e-42 | 143 |
| Msa0886100 | MtrunA17_Chr1g0185131 | 51.515 | 132 | 57 | 1 | 40 | 171 | 32 | 156 | 2.17e-42 | 144 |
| Msa0886100 | MtrunA17_Chr5g0397881 | 58.333 | 108 | 45 | 0 | 24 | 131 | 8 | 115 | 3.90e-42 | 144 |
| Msa0886100 | MtrunA17_Chr8g0392001 | 52.055 | 146 | 59 | 4 | 38 | 172 | 20 | 165 | 6.79e-41 | 141 |
| Msa0886100 | MtrunA17_Chr2g0284481 | 55.556 | 108 | 48 | 0 | 30 | 137 | 5 | 112 | 1.04e-39 | 138 |
| Msa0886100 | MtrunA17_Chr6g0485571 | 62.500 | 96 | 36 | 0 | 38 | 133 | 9 | 104 | 1.07e-39 | 137 |
| Msa0886100 | MtrunA17_Chr7g0257331 | 56.383 | 94 | 41 | 0 | 39 | 132 | 21 | 114 | 3.95e-38 | 130 |
| Msa0886100 | MtrunA17_Chr6g0472421 | 60.870 | 92 | 36 | 0 | 40 | 131 | 33 | 124 | 3.96e-38 | 133 |
| Msa0886100 | MtrunA17_Chr1g0203601 | 59.574 | 94 | 38 | 0 | 40 | 133 | 18 | 111 | 5.22e-38 | 132 |
| Msa0886100 | MtrunA17_Chr2g0330841 | 61.765 | 102 | 32 | 2 | 82 | 182 | 29 | 124 | 1.46e-34 | 125 |
| Msa0886100 | MtrunA17_Chr4g0047421 | 56.701 | 97 | 38 | 1 | 39 | 131 | 32 | 128 | 1.88e-34 | 120 |
| Msa0886100 | MtrunA17_Chr8g0375041 | 53.763 | 93 | 43 | 0 | 39 | 131 | 8 | 100 | 1.72e-32 | 117 |
| Msa0886100 | MtrunA17_Chr1g0179321 | 61.290 | 62 | 24 | 0 | 38 | 99 | 47 | 108 | 4.62e-25 | 93.6 |
| Msa0886100 | MtrunA17_Chr4g0023771 | 59.420 | 69 | 27 | 1 | 30 | 97 | 4 | 72 | 8.80e-21 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886100 | AT4G13980.1 | 63.226 | 155 | 56 | 1 | 19 | 172 | 1 | 155 | 3.97e-65 | 207 |
| Msa0886100 | AT1G32330.2 | 49.718 | 177 | 72 | 3 | 7 | 170 | 8 | 180 | 2.54e-51 | 171 |
| Msa0886100 | AT5G16820.1 | 56.338 | 142 | 53 | 1 | 38 | 170 | 25 | 166 | 2.80e-51 | 171 |
| Msa0886100 | AT5G16820.2 | 56.338 | 142 | 53 | 1 | 38 | 170 | 25 | 166 | 2.80e-51 | 171 |
| Msa0886100 | AT1G32330.1 | 49.718 | 177 | 72 | 3 | 7 | 170 | 8 | 180 | 2.92e-51 | 171 |
| Msa0886100 | AT3G02990.1 | 53.846 | 156 | 59 | 3 | 27 | 170 | 7 | 161 | 4.64e-51 | 170 |
| Msa0886100 | AT4G17750.1 | 54.362 | 149 | 50 | 1 | 40 | 170 | 52 | 200 | 1.21e-49 | 167 |
| Msa0886100 | AT4G18880.1 | 58.156 | 141 | 54 | 1 | 34 | 169 | 9 | 149 | 2.88e-44 | 151 |
| Msa0886100 | AT2G26150.1 | 50.725 | 138 | 64 | 2 | 37 | 170 | 41 | 178 | 9.74e-44 | 148 |
| Msa0886100 | AT2G26150.4 | 50.725 | 138 | 64 | 2 | 37 | 170 | 41 | 178 | 9.74e-44 | 148 |
| Msa0886100 | AT1G46264.1 | 59.821 | 112 | 35 | 1 | 39 | 140 | 33 | 144 | 1.05e-43 | 148 |
| Msa0886100 | AT3G22830.1 | 48.276 | 145 | 64 | 1 | 37 | 170 | 58 | 202 | 3.86e-43 | 148 |
| Msa0886100 | AT3G24520.1 | 50.365 | 137 | 61 | 2 | 38 | 173 | 15 | 145 | 1.10e-42 | 145 |
| Msa0886100 | AT5G45710.3 | 52.817 | 142 | 63 | 1 | 32 | 169 | 5 | 146 | 3.63e-42 | 144 |
| Msa0886100 | AT5G45710.1 | 52.817 | 142 | 63 | 1 | 32 | 169 | 5 | 146 | 3.63e-42 | 144 |
| Msa0886100 | AT5G03720.2 | 47.407 | 135 | 69 | 1 | 38 | 170 | 53 | 187 | 1.67e-40 | 141 |
| Msa0886100 | AT5G03720.1 | 47.407 | 135 | 69 | 1 | 38 | 170 | 53 | 187 | 1.67e-40 | 141 |
| Msa0886100 | AT3G51910.1 | 51.145 | 131 | 61 | 1 | 40 | 167 | 29 | 159 | 6.67e-40 | 137 |
| Msa0886100 | AT5G43840.1 | 44.805 | 154 | 65 | 2 | 39 | 182 | 18 | 161 | 1.35e-39 | 136 |
| Msa0886100 | AT1G67970.1 | 51.429 | 140 | 59 | 4 | 38 | 170 | 17 | 154 | 8.12e-39 | 136 |
| Msa0886100 | AT4G11660.1 | 59.000 | 100 | 41 | 0 | 32 | 131 | 51 | 150 | 1.64e-38 | 135 |
| Msa0886100 | AT4G36990.1 | 58.947 | 95 | 39 | 0 | 39 | 133 | 13 | 107 | 3.04e-38 | 132 |
| Msa0886100 | AT5G54070.1 | 62.366 | 93 | 35 | 0 | 38 | 130 | 69 | 161 | 3.08e-37 | 131 |
| Msa0886100 | AT5G62020.1 | 48.739 | 119 | 60 | 1 | 19 | 136 | 1 | 119 | 3.75e-37 | 130 |
| Msa0886100 | AT2G41690.1 | 50.435 | 115 | 57 | 0 | 40 | 154 | 40 | 154 | 3.92e-37 | 129 |
| Msa0886100 | AT3G63350.1 | 51.724 | 116 | 48 | 2 | 23 | 130 | 3 | 118 | 2.30e-35 | 125 |
| Msa0886100 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 40 | 127 | 146 | 233 | 1.10e-23 | 95.1 |
| Msa0886100 | AT4G18870.1 | 43.750 | 96 | 53 | 1 | 32 | 127 | 5 | 99 | 2.72e-22 | 91.3 |
| Msa0886100 | AT1G77570.1 | 42.391 | 92 | 49 | 3 | 37 | 124 | 22 | 113 | 5.73e-18 | 76.6 |
| Msa0886100 | AT4G19630.1 | 33.981 | 103 | 64 | 2 | 37 | 136 | 8 | 109 | 1.11e-14 | 67.8 |
Find 38 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_1:+44171637 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_1:+44171573 | None:intergenic |
| GAAATTGCTGTGTTTGAAAT+AGG | 0.280393 | 6_1:+44173765 | None:intergenic |
| CTCTTTCTTCTTGCTTAGGC+TGG | 0.312182 | 6_1:+44173990 | None:intergenic |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6_1:-44173852 | Msa0886100:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_1:-44173822 | Msa0886100:CDS |
| CAAGCTCTTTCTTCTTGCTT+AGG | 0.372728 | 6_1:+44173986 | None:intergenic |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_1:+44173793 | None:intergenic |
| AGCTTAGGAGTTTGGATTGA+AGG | 0.409865 | 6_1:+44171581 | None:intergenic |
| CCGGAGGATGACTATGTTTG+TGG | 0.444346 | 6_1:+44171674 | None:intergenic |
| TGCTGTGTTTGAAATAGGTT+GGG | 0.448167 | 6_1:+44173770 | None:intergenic |
| AAAATCAGATCCTGATCGTT+GGG | 0.456082 | 6_1:-44171767 | Msa0886100:CDS |
| TTGCTGTGTTTGAAATAGGT+TGG | 0.457272 | 6_1:+44173769 | None:intergenic |
| CCACAAACATAGTCATCCTC+CGG | 0.475387 | 6_1:-44171674 | Msa0886100:CDS |
| TCTCAAGATAATTATAGCTT+AGG | 0.475528 | 6_1:+44171566 | None:intergenic |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_1:+44171757 | None:intergenic |
| GCTTAGGAGTTTGGATTGAA+GGG | 0.479016 | 6_1:+44171582 | None:intergenic |
| GGATGACTATGTTTGTGGAT+AGG | 0.494229 | 6_1:+44171679 | None:intergenic |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_1:-44171641 | Msa0886100:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_1:-44173917 | Msa0886100:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_1:+44173741 | None:intergenic |
| TCATACATCTTCTGAAGAAA+CGG | 0.512837 | 6_1:+44173892 | None:intergenic |
| TCATCAGCCGCTGCTGCCGA+CGG | 0.546634 | 6_1:-44173934 | Msa0886100:CDS |
| TCTGCTTCCGTCGGCAGCAG+CGG | 0.553780 | 6_1:+44173927 | None:intergenic |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.554788 | 6_1:-44173922 | Msa0886100:CDS |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6_1:+44173855 | None:intergenic |
| CACAAACATAGTCATCCTCC+GGG | 0.584735 | 6_1:-44171673 | Msa0886100:CDS |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_1:+44173731 | None:intergenic |
| GCAGCGGCTGATGATGATTG+TGG | 0.600309 | 6_1:+44173943 | None:intergenic |
| GTTTGTGGATAGGTTTCTTG+CGG | 0.621089 | 6_1:+44171689 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_1:+44173918 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6_1:+44173856 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_1:+44173796 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.632851 | 6_1:+44173852 | None:intergenic |
| TCTTCAGAAGATGTATGACA+TGG | 0.653567 | 6_1:-44173887 | Msa0886100:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_1:+44173797 | None:intergenic |
| TCTGGATCTACAGCAAAACC+CGG | 0.667096 | 6_1:+44171655 | None:intergenic |
| GGATCTACAGCAAAACCCGG+AGG | 0.768670 | 6_1:+44171658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTATTAGTTATTTAC+CGG | + | chr6_1:44172821-44172840 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACATAAAACTT+GGG | + | chr6_1:44173252-44173271 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAACATAAAACT+TGG | + | chr6_1:44173253-44173272 | None:intergenic | 10.0% |
| !! | AGATTCATAAATATTAAAAA+AGG | + | chr6_1:44173549-44173568 | None:intergenic | 10.0% |
| !!! | TTATATTTTTATTTTATCAG+GGG | - | chr6_1:44173607-44173626 | Msa0886100:intron | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44173972-44173991 | None:intergenic | 10.0% |
| !! | ATTATTTCATTGAATTTAGT+TGG | - | chr6_1:44172237-44172256 | Msa0886100:intron | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | + | chr6_1:44172662-44172681 | None:intergenic | 15.0% |
| !! | AATATATTTATCAATCTTCT+AGG | + | chr6_1:44173277-44173296 | None:intergenic | 15.0% |
| !! | TTAAAAAAAACATGAAACTT+GGG | + | chr6_1:44173413-44173432 | None:intergenic | 15.0% |
| !! | AATATATTTATCAATCTTCT+AGG | + | chr6_1:44173277-44173296 | None:intergenic | 15.0% |
| !! | ATATTCTTGTAAAGATTTAA+TGG | - | chr6_1:44173843-44173862 | Msa0886100:CDS | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44172091-44172110 | Msa0886100:intron | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44172197-44172216 | Msa0886100:intron | 20.0% |
| !! | AGGATTAAACAATAAAAATC+AGG | + | chr6_1:44172691-44172710 | None:intergenic | 20.0% |
| !! | TCAACAAAAAAATTAAAGTC+CGG | - | chr6_1:44172799-44172818 | Msa0886100:intron | 20.0% |
| !!! | TTTCTTTTTGCTTCTTTAAT+TGG | - | chr6_1:44173039-44173058 | Msa0886100:intron | 20.0% |
| !!! | TTCTTTTTGCTTCTTTAATT+GGG | - | chr6_1:44173040-44173059 | Msa0886100:intron | 20.0% |
| !! | GTTAAAAAAAACATGAAACT+TGG | + | chr6_1:44173414-44173433 | None:intergenic | 20.0% |
| ! | CAGACAAAAATAAATAACTC+TGG | + | chr6_1:44171657-44171676 | None:intergenic | 25.0% |
| !!! | CAGAGTTATTTATTTTTGTC+TGG | - | chr6_1:44171655-44171674 | Msa0886100:CDS | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44172214-44172233 | Msa0886100:intron | 25.0% |
| ! | ATACTGAATTATGTCATTGT+CGG | + | chr6_1:44172392-44172411 | None:intergenic | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | - | chr6_1:44172404-44172423 | Msa0886100:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | chr6_1:44172618-44172637 | None:intergenic | 25.0% |
| !!! | GGACTTTAATTTTTTTGTTG+AGG | + | chr6_1:44172800-44172819 | None:intergenic | 25.0% |
| ! | GTAATCTACTGGTAATATTT+GGG | - | chr6_1:44172917-44172936 | Msa0886100:intron | 25.0% |
| ! | GTAATCTACTGGTAATATTT+GGG | - | chr6_1:44172917-44172936 | Msa0886100:intron | 25.0% |
| ! | GTAATCTACTGGTAATATTT+GGG | - | chr6_1:44172917-44172936 | Msa0886100:intron | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44173725-44173744 | Msa0886100:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44173726-44173745 | Msa0886100:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44173754-44173773 | Msa0886100:CDS | 25.0% |
| ! | ATTACACACATAAAAACTTC+AGG | + | chr6_1:44173818-44173837 | None:intergenic | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44174137-44174156 | None:intergenic | 25.0% |
| ! | TCTCAAGATAATTATAGCTT+AGG | + | chr6_1:44174144-44174163 | None:intergenic | 25.0% |
| ! | TCATACATCTTCTGAAGAAA+CGG | + | chr6_1:44171818-44171837 | None:intergenic | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44171885-44171904 | Msa0886100:intron | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | + | chr6_1:44171945-44171964 | None:intergenic | 30.0% |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44171993-44172012 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44172125-44172144 | Msa0886100:intron | 30.0% | |
| ! | TAGGTCTTAATTTTCAGTGT+GGG | - | chr6_1:44172479-44172498 | Msa0886100:intron | 30.0% |
| AAAAAAATTTCTGCAGCATC+TGG | - | chr6_1:44172555-44172574 | Msa0886100:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44172629-44172648 | Msa0886100:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44172651-44172670 | None:intergenic | 30.0% | |
| GGTAATCTACTGGTAATATT+TGG | - | chr6_1:44172916-44172935 | Msa0886100:intron | 30.0% | |
| GGTAATCTACTGGTAATATT+TGG | - | chr6_1:44172916-44172935 | Msa0886100:intron | 30.0% | |
| GGTAATCTACTGGTAATATT+TGG | - | chr6_1:44172916-44172935 | Msa0886100:intron | 30.0% | |
| ATGGCAATGAGTAAAAACTA+AGG | - | chr6_1:44173773-44173792 | Msa0886100:CDS | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44173910-44173929 | Msa0886100:CDS | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44173911-44173930 | Msa0886100:CDS | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44173988-44174007 | Msa0886100:CDS | 30.0% | |
| TCTTCAGAAGATGTATGACA+TGG | - | chr6_1:44171820-44171839 | Msa0886100:intron | 35.0% | |
| ! | TGCTGTGTTTGAAATAGGTT+GGG | + | chr6_1:44171940-44171959 | None:intergenic | 35.0% |
| ! | TTGCTGTGTTTGAAATAGGT+TGG | + | chr6_1:44171941-44171960 | None:intergenic | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | + | chr6_1:44171979-44171998 | None:intergenic | 35.0% |
| AAATGTTGAGACATGAGACA+TGG | - | chr6_1:44172267-44172286 | Msa0886100:intron | 35.0% | |
| ACATGAGACATGGTTAAAGA+TGG | - | chr6_1:44172277-44172296 | Msa0886100:intron | 35.0% | |
| ! | ATAATCATATGTGTCGGTGT+CGG | - | chr6_1:44172410-44172429 | Msa0886100:intron | 35.0% |
| TCCTCAAATTAAGTGTATCC+TGG | + | chr6_1:44172445-44172464 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | chr6_1:44172472-44172491 | None:intergenic | 35.0% | |
| ! | GTAGGTCTTAATTTTCAGTG+TGG | - | chr6_1:44172478-44172497 | Msa0886100:intron | 35.0% |
| AGGTATAACAGGTAATCTAC+TGG | - | chr6_1:44172906-44172925 | Msa0886100:intron | 35.0% | |
| TACTGGTAATATTTGGGTCA+TGG | - | chr6_1:44172923-44172942 | Msa0886100:intron | 35.0% | |
| ACTGGTAATATTTGGGTCAT+GGG | - | chr6_1:44172924-44172943 | Msa0886100:intron | 35.0% | |
| GGTTCAACATTCAAGTATCA+AGG | - | chr6_1:44172945-44172964 | Msa0886100:intron | 35.0% | |
| CAAGTATCAAGGTAATCTAC+TGG | - | chr6_1:44172956-44172975 | Msa0886100:intron | 35.0% | |
| TACTGGTAATATTTGGGTCA+TGG | - | chr6_1:44172923-44172942 | Msa0886100:intron | 35.0% | |
| ACTGGTAATATTTGGGTCAT+GGG | - | chr6_1:44172924-44172943 | Msa0886100:intron | 35.0% | |
| TTGCTTCTTTAATTGGGTCA+TGG | - | chr6_1:44173046-44173065 | Msa0886100:intron | 35.0% | |
| TGCTTCTTTAATTGGGTCAT+GGG | - | chr6_1:44173047-44173066 | Msa0886100:intron | 35.0% | |
| GGTTCAACATTCAAGTATCA+AGG | - | chr6_1:44172945-44172964 | Msa0886100:intron | 35.0% | |
| CAAGTATCAAGGTAATCTAC+TGG | - | chr6_1:44172956-44172975 | Msa0886100:intron | 35.0% | |
| TACTGGTAATATTTGGGTCA+TGG | - | chr6_1:44172923-44172942 | Msa0886100:intron | 35.0% | |
| ACTGGTAATATTTGGGTCAT+GGG | - | chr6_1:44172924-44172943 | Msa0886100:intron | 35.0% | |
| ! | CTCGGCTCTAATGTAAAAAT+AGG | + | chr6_1:44173633-44173652 | None:intergenic | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44173806-44173825 | None:intergenic | 35.0% | |
| AAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44173939-44173958 | Msa0886100:CDS | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44173940-44173959 | Msa0886100:CDS | 35.0% | |
| !! | TTTTGCTGTAGATCCAGAAA+GGG | - | chr6_1:44174057-44174076 | Msa0886100:intron | 35.0% |
| CAAGCTCTTTCTTCTTGCTT+AGG | + | chr6_1:44171724-44171743 | None:intergenic | 40.0% | |
| AATTAAGTGTATCCTGGCGT+CGG | + | chr6_1:44172439-44172458 | None:intergenic | 40.0% | |
| ! | GCCAGGATACACTTAATTTG+AGG | - | chr6_1:44172441-44172460 | Msa0886100:intron | 40.0% |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | chr6_1:44172504-44172523 | Msa0886100:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44172571-44172590 | Msa0886100:intron | 40.0% |
| AATTCACTGAAGTAGCCTAG+TGG | - | chr6_1:44172862-44172881 | Msa0886100:intron | 40.0% | |
| AGATGCTTGAGATGTGTACA+GGG | + | chr6_1:44173677-44173696 | None:intergenic | 40.0% | |
| TAGATGCTTGAGATGTGTAC+AGG | + | chr6_1:44173678-44173697 | None:intergenic | 40.0% | |
| TGTACACATCTCAAGCATCT+AGG | - | chr6_1:44173677-44173696 | Msa0886100:intron | 40.0% | |
| GTTTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44174021-44174040 | None:intergenic | 40.0% | |
| GGATGACTATGTTTGTGGAT+AGG | + | chr6_1:44174031-44174050 | None:intergenic | 40.0% | |
| !! | GTTTTGCTGTAGATCCAGAA+AGG | - | chr6_1:44174056-44174075 | Msa0886100:intron | 40.0% |
| GCTTAGGAGTTTGGATTGAA+GGG | + | chr6_1:44174128-44174147 | None:intergenic | 40.0% | |
| AGCTTAGGAGTTTGGATTGA+AGG | + | chr6_1:44174129-44174148 | None:intergenic | 40.0% | |
| CTCTTTCTTCTTGCTTAGGC+TGG | + | chr6_1:44171720-44171739 | None:intergenic | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44171854-44171873 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44171855-44171874 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44171858-44171877 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44171855-44171874 | Msa0886100:intron | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44171917-44171936 | None:intergenic | 45.0% | |
| TTCGTTGTTTGTGTCGTGTC+TGG | + | chr6_1:44172360-44172379 | None:intergenic | 45.0% | |
| TTCAGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44172491-44172510 | Msa0886100:intron | 45.0% | |
| TTTCTGCAGCATCTGGATCT+TGG | - | chr6_1:44172562-44172581 | Msa0886100:intron | 45.0% | |
| TGCAAACAACTCAATGGAGC+TGG | - | chr6_1:44172756-44172775 | Msa0886100:intron | 45.0% | |
| TTTGTTGAGGCCCATACCTT+GGG | + | chr6_1:44172787-44172806 | None:intergenic | 45.0% | |
| ! | TTTTGTTGAGGCCCATACCT+TGG | + | chr6_1:44172788-44172807 | None:intergenic | 45.0% |
| AGCCTAGTGGTACAATTGCA+AGG | - | chr6_1:44172875-44172894 | Msa0886100:intron | 45.0% | |
| TGCCTTGCAATTGTACCACT+AGG | + | chr6_1:44172880-44172899 | None:intergenic | 45.0% | |
| TAGTGGTACAATTGCAAGGC+AGG | - | chr6_1:44172879-44172898 | Msa0886100:intron | 45.0% | |
| ACAATTGCAAGGCAGGTAAC+AGG | - | chr6_1:44172886-44172905 | Msa0886100:intron | 45.0% | |
| AGGCAGGTAACAGGTATAAC+AGG | - | chr6_1:44172895-44172914 | Msa0886100:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+TGG | + | chr6_1:44173803-44173822 | None:intergenic | 45.0% | |
| CCACAAACATAGTCATCCTC+CGG | - | chr6_1:44174033-44174052 | Msa0886100:intron | 45.0% | |
| CACAAACATAGTCATCCTCC+GGG | - | chr6_1:44174034-44174053 | Msa0886100:intron | 45.0% | |
| TCTGGATCTACAGCAAAACC+CGG | + | chr6_1:44174055-44174074 | None:intergenic | 45.0% | |
| !!! | AATTATATTTTTATTTTATC+AGG | - | chr6_1:44173605-44173624 | Msa0886100:intron | 5.0% |
| !!! | ATTATATTTTTATTTTATCA+GGG | - | chr6_1:44173606-44173625 | Msa0886100:intron | 5.0% |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44171792-44171811 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44171913-44171932 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44171914-44171933 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | + | chr6_1:44171969-44171988 | None:intergenic | 50.0% |
| AGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44172494-44172513 | Msa0886100:intron | 50.0% | |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44172495-44172514 | Msa0886100:intron | 50.0% | |
| GTACGATGCAGAAGAGAAGC+AGG | + | chr6_1:44172711-44172730 | None:intergenic | 50.0% | |
| CTTCTGCATCGTACACATCC+AGG | - | chr6_1:44172717-44172736 | Msa0886100:intron | 50.0% | |
| TTGTTGAGGCCCATACCTTG+GGG | + | chr6_1:44172786-44172805 | None:intergenic | 50.0% | |
| TCCCTACGTAATTGGAGGCT+CGG | + | chr6_1:44173651-44173670 | None:intergenic | 50.0% | |
| AGCCTCCAATTACGTAGGGA+CGG | - | chr6_1:44173651-44173670 | Msa0886100:intron | 50.0% | |
| CAGGAAGCAAATCTGGTGGT+GGG | + | chr6_1:44173799-44173818 | None:intergenic | 50.0% | |
| TCAGGAAGCAAATCTGGTGG+TGG | + | chr6_1:44173800-44173819 | None:intergenic | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44173953-44173972 | None:intergenic | 50.0% | |
| CCGGAGGATGACTATGTTTG+TGG | + | chr6_1:44174036-44174055 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44174066-44174085 | Msa0886100:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44174073-44174092 | None:intergenic | 50.0% | |
| ! | GCAGCGGCTGATGATGATTG+TGG | + | chr6_1:44171767-44171786 | None:intergenic | 55.0% |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44171790-44171809 | Msa0886100:intron | 55.0% | |
| !! | GAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44172460-44172479 | Msa0886100:intron | 55.0% |
| GAGTTGTTTGCACCCCCCAA+GGG | + | chr6_1:44172748-44172767 | None:intergenic | 55.0% | |
| TGAGTTGTTTGCACCCCCCA+AGG | + | chr6_1:44172749-44172768 | None:intergenic | 55.0% | |
| ! | GGGGGGTGCAAACAACTCAA+TGG | - | chr6_1:44172750-44172769 | Msa0886100:intron | 55.0% |
| AGCCGAGCCTCCAATTACGT+AGG | - | chr6_1:44173646-44173665 | Msa0886100:intron | 55.0% | |
| GCCGAGCCTCCAATTACGTA+GGG | - | chr6_1:44173647-44173666 | Msa0886100:intron | 55.0% | |
| GGATCTACAGCAAAACCCGG+AGG | + | chr6_1:44174052-44174071 | None:intergenic | 55.0% | |
| GCATCGTACACATCCAGGCC+CGG | - | chr6_1:44172722-44172741 | Msa0886100:intron | 60.0% | |
| AATGGAGCTGGACCTCCCCA+AGG | - | chr6_1:44172768-44172787 | Msa0886100:intron | 60.0% | |
| AGCTGGACCTCCCCAAGGTA+TGG | - | chr6_1:44172773-44172792 | Msa0886100:intron | 60.0% | |
| GCTGGACCTCCCCAAGGTAT+GGG | - | chr6_1:44172774-44172793 | Msa0886100:intron | 60.0% | |
| TTGAGGCCCATACCTTGGGG+AGG | + | chr6_1:44172783-44172802 | None:intergenic | 60.0% | |
| GGCCGTCCCTACGTAATTGG+AGG | + | chr6_1:44173656-44173675 | None:intergenic | 60.0% | |
| CAGGGCCGTCCCTACGTAAT+TGG | + | chr6_1:44173659-44173678 | None:intergenic | 60.0% | |
| TCATCAGCCGCTGCTGCCGA+CGG | - | chr6_1:44171773-44171792 | Msa0886100:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+CGG | + | chr6_1:44171783-44171802 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44171785-44171804 | Msa0886100:intron | 65.0% | |
| TGTTTGCACCCCCCAAGGGC+CGG | + | chr6_1:44172744-44172763 | None:intergenic | 65.0% | |
| ACACATCCAGGCCCGGCCCT+TGG | - | chr6_1:44172729-44172748 | Msa0886100:intron | 70.0% | |
| CACATCCAGGCCCGGCCCTT+GGG | - | chr6_1:44172730-44172749 | Msa0886100:intron | 70.0% | |
| ACATCCAGGCCCGGCCCTTG+GGG | - | chr6_1:44172731-44172750 | Msa0886100:intron | 70.0% | |
| GTTTGCACCCCCCAAGGGCC+GGG | + | chr6_1:44172743-44172762 | None:intergenic | 70.0% | |
| ! | CGGTGTCGGACACCGACGCC+AGG | - | chr6_1:44172424-44172443 | Msa0886100:intron | 75.0% |
| CATCCAGGCCCGGCCCTTGG+GGG | - | chr6_1:44172732-44172751 | Msa0886100:intron | 75.0% | |
| ATCCAGGCCCGGCCCTTGGG+GGG | - | chr6_1:44172733-44172752 | Msa0886100:intron | 75.0% | |
| ! | CACCCCCCAAGGGCCGGGCC+TGG | + | chr6_1:44172738-44172757 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44171546 | 44174183 | 44171546 | ID=Msa0886100;Name=Msa0886100 |
| chr6_1 | mRNA | 44171546 | 44174183 | 44171546 | ID=Msa0886100-mRNA-1;Parent=Msa0886100;Name=Msa0886100-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.66|0.5|0.33|3|0|182 |
| chr6_1 | exon | 44174181 | 44174183 | 44174181 | ID=Msa0886100-mRNA-1:exon:9491;Parent=Msa0886100-mRNA-1 |
| chr6_1 | exon | 44173735 | 44174028 | 44173735 | ID=Msa0886100-mRNA-1:exon:9490;Parent=Msa0886100-mRNA-1 |
| chr6_1 | exon | 44171546 | 44171797 | 44171546 | ID=Msa0886100-mRNA-1:exon:9489;Parent=Msa0886100-mRNA-1 |
| chr6_1 | CDS | 44174181 | 44174183 | 44174181 | ID=Msa0886100-mRNA-1:cds;Parent=Msa0886100-mRNA-1 |
| chr6_1 | CDS | 44173735 | 44174028 | 44173735 | ID=Msa0886100-mRNA-1:cds;Parent=Msa0886100-mRNA-1 |
| chr6_1 | CDS | 44171546 | 44171797 | 44171546 | ID=Msa0886100-mRNA-1:cds;Parent=Msa0886100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
