Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886110 | XP_013452015.1 | 71.865 | 327 | 76 | 4 | 1 | 316 | 1 | 322 | 1.79e-161 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886110 | sp|Q94BZ5|HSFA5_ARATH | 56.710 | 231 | 98 | 2 | 1 | 229 | 1 | 231 | 4.07e-83 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886110 | A0A072UAD0 | 71.865 | 327 | 76 | 4 | 1 | 316 | 1 | 322 | 8.55e-162 | 463 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886110 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886110 | MtrunA17_Chr6g0467041 | 71.865 | 327 | 76 | 4 | 1 | 316 | 1 | 322 | 1.65e-165 | 463 |
| Msa0886110 | MtrunA17_Chr8g0378061 | 76.531 | 294 | 30 | 4 | 23 | 277 | 23 | 316 | 1.86e-152 | 436 |
| Msa0886110 | MtrunA17_Chr8g0378061 | 84.615 | 39 | 6 | 0 | 278 | 316 | 412 | 450 | 8.19e-15 | 74.7 |
| Msa0886110 | MtrunA17_Chr2g0330821 | 56.338 | 284 | 106 | 5 | 1 | 269 | 60 | 340 | 4.10e-98 | 293 |
| Msa0886110 | MtrunA17_Chr2g0330841 | 52.362 | 254 | 75 | 6 | 64 | 277 | 29 | 276 | 2.38e-72 | 229 |
| Msa0886110 | MtrunA17_Chr5g0410881 | 50.711 | 211 | 90 | 4 | 22 | 218 | 32 | 242 | 4.40e-64 | 210 |
| Msa0886110 | MtrunA17_Chr8g0379701 | 37.222 | 360 | 156 | 9 | 15 | 316 | 5 | 352 | 6.62e-64 | 207 |
| Msa0886110 | MtrunA17_Chr4g0039891 | 44.976 | 209 | 103 | 3 | 20 | 216 | 10 | 218 | 1.80e-54 | 184 |
| Msa0886110 | MtrunA17_Chr1g0204741 | 43.049 | 223 | 110 | 6 | 7 | 215 | 20 | 239 | 2.04e-50 | 170 |
| Msa0886110 | MtrunA17_Chr7g0260331 | 45.411 | 207 | 103 | 4 | 19 | 215 | 46 | 252 | 6.31e-50 | 169 |
| Msa0886110 | MtrunA17_Chr3g0135831 | 42.647 | 204 | 111 | 3 | 19 | 217 | 43 | 245 | 6.62e-49 | 167 |
| Msa0886110 | MtrunA17_Chr1g0185131 | 42.079 | 202 | 105 | 3 | 22 | 218 | 32 | 226 | 2.53e-45 | 157 |
| Msa0886110 | MtrunA17_Chr4g0071051 | 44.624 | 186 | 99 | 2 | 19 | 203 | 98 | 280 | 4.27e-45 | 158 |
| Msa0886110 | MtrunA17_Chr3g0134031 | 67.647 | 102 | 33 | 0 | 12 | 113 | 14 | 115 | 4.36e-45 | 157 |
| Msa0886110 | MtrunA17_Chr8g0392001 | 47.692 | 195 | 89 | 6 | 20 | 201 | 20 | 214 | 2.45e-44 | 155 |
| Msa0886110 | MtrunA17_Chr5g0402291 | 62.264 | 106 | 40 | 0 | 17 | 122 | 4 | 109 | 7.73e-43 | 149 |
| Msa0886110 | MtrunA17_Chr5g0397881 | 61.111 | 108 | 42 | 0 | 6 | 113 | 8 | 115 | 1.26e-42 | 150 |
| Msa0886110 | MtrunA17_Chr5g0441531 | 69.892 | 93 | 28 | 0 | 21 | 113 | 24 | 116 | 2.86e-42 | 146 |
| Msa0886110 | MtrunA17_Chr6g0485571 | 40.686 | 204 | 114 | 2 | 20 | 219 | 9 | 209 | 1.26e-41 | 147 |
| Msa0886110 | MtrunA17_Chr2g0284481 | 59.259 | 108 | 44 | 0 | 12 | 119 | 5 | 112 | 9.54e-41 | 146 |
| Msa0886110 | MtrunA17_Chr6g0472421 | 63.441 | 93 | 34 | 0 | 21 | 113 | 32 | 124 | 1.62e-38 | 139 |
| Msa0886110 | MtrunA17_Chr1g0203601 | 61.053 | 95 | 37 | 0 | 21 | 115 | 17 | 111 | 1.15e-37 | 135 |
| Msa0886110 | MtrunA17_Chr7g0257331 | 50.442 | 113 | 56 | 0 | 1 | 113 | 1 | 113 | 2.65e-37 | 133 |
| Msa0886110 | MtrunA17_Chr4g0047421 | 58.763 | 97 | 36 | 1 | 21 | 113 | 32 | 128 | 1.56e-34 | 125 |
| Msa0886110 | MtrunA17_Chr8g0375041 | 56.989 | 93 | 40 | 0 | 21 | 113 | 8 | 100 | 2.19e-33 | 123 |
| Msa0886110 | MtrunA17_Chr1g0179321 | 64.516 | 62 | 22 | 0 | 20 | 81 | 47 | 108 | 3.46e-25 | 97.4 |
| Msa0886110 | MtrunA17_Chr4g0023771 | 62.319 | 69 | 25 | 1 | 12 | 79 | 4 | 72 | 5.92e-21 | 86.3 |
| Msa0886110 | MtrunA17_Chr1g0179311 | 29.560 | 159 | 101 | 4 | 61 | 216 | 1 | 151 | 1.33e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886110 | AT4G13980.1 | 56.710 | 231 | 98 | 2 | 1 | 229 | 1 | 231 | 4.14e-84 | 261 |
| Msa0886110 | AT1G32330.1 | 46.809 | 235 | 106 | 5 | 1 | 216 | 16 | 250 | 2.68e-58 | 195 |
| Msa0886110 | AT1G32330.2 | 46.809 | 235 | 106 | 5 | 1 | 216 | 16 | 250 | 3.56e-58 | 194 |
| Msa0886110 | AT4G17750.1 | 48.148 | 216 | 91 | 4 | 22 | 216 | 52 | 267 | 4.99e-58 | 194 |
| Msa0886110 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 5.91e-58 | 194 |
| Msa0886110 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 5.91e-58 | 194 |
| Msa0886110 | AT3G02990.1 | 43.348 | 233 | 119 | 4 | 8 | 228 | 9 | 240 | 1.09e-57 | 193 |
| Msa0886110 | AT4G18880.1 | 47.867 | 211 | 100 | 3 | 16 | 220 | 9 | 215 | 2.99e-51 | 174 |
| Msa0886110 | AT5G45710.3 | 34.462 | 325 | 166 | 6 | 14 | 316 | 5 | 304 | 1.65e-50 | 171 |
| Msa0886110 | AT5G45710.1 | 34.462 | 325 | 166 | 6 | 14 | 316 | 5 | 304 | 1.65e-50 | 171 |
| Msa0886110 | AT2G26150.1 | 41.818 | 220 | 120 | 4 | 19 | 230 | 41 | 260 | 1.89e-48 | 166 |
| Msa0886110 | AT2G26150.4 | 41.818 | 220 | 120 | 4 | 19 | 230 | 41 | 260 | 1.89e-48 | 166 |
| Msa0886110 | AT3G22830.1 | 40.278 | 216 | 116 | 3 | 19 | 221 | 58 | 273 | 6.00e-47 | 163 |
| Msa0886110 | AT5G03720.2 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 3.47e-46 | 161 |
| Msa0886110 | AT5G03720.1 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 3.47e-46 | 161 |
| Msa0886110 | AT3G51910.1 | 40.284 | 211 | 109 | 5 | 22 | 226 | 29 | 228 | 1.42e-44 | 153 |
| Msa0886110 | AT1G46264.1 | 63.393 | 112 | 31 | 1 | 21 | 122 | 33 | 144 | 1.90e-44 | 155 |
| Msa0886110 | AT3G24520.1 | 44.767 | 172 | 77 | 3 | 20 | 191 | 15 | 168 | 5.79e-43 | 150 |
| Msa0886110 | AT1G67970.1 | 44.271 | 192 | 94 | 5 | 20 | 201 | 17 | 205 | 1.39e-42 | 151 |
| Msa0886110 | AT5G43840.1 | 41.711 | 187 | 97 | 3 | 21 | 205 | 18 | 194 | 8.32e-41 | 144 |
| Msa0886110 | AT3G63350.1 | 38.308 | 201 | 115 | 3 | 5 | 196 | 3 | 203 | 1.77e-39 | 140 |
| Msa0886110 | AT5G54070.1 | 43.169 | 183 | 98 | 2 | 20 | 201 | 69 | 246 | 2.27e-39 | 141 |
| Msa0886110 | AT4G11660.1 | 62.000 | 100 | 38 | 0 | 14 | 113 | 51 | 150 | 5.23e-39 | 141 |
| Msa0886110 | AT4G36990.1 | 58.095 | 105 | 44 | 0 | 11 | 115 | 3 | 107 | 1.42e-38 | 138 |
| Msa0886110 | AT5G62020.1 | 50.420 | 119 | 58 | 1 | 1 | 118 | 1 | 119 | 2.12e-37 | 135 |
| Msa0886110 | AT2G41690.1 | 52.174 | 115 | 55 | 0 | 22 | 136 | 40 | 154 | 2.10e-36 | 131 |
| Msa0886110 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 22 | 109 | 146 | 233 | 4.26e-22 | 94.4 |
| Msa0886110 | AT4G18870.1 | 45.833 | 96 | 51 | 1 | 14 | 109 | 5 | 99 | 6.00e-22 | 94.0 |
| Msa0886110 | AT1G77570.1 | 42.391 | 92 | 49 | 3 | 19 | 106 | 22 | 113 | 3.77e-16 | 74.7 |
| Msa0886110 | AT2G26150.3 | 33.333 | 144 | 88 | 4 | 82 | 217 | 49 | 192 | 7.40e-15 | 73.9 |
| Msa0886110 | AT2G26150.2 | 33.333 | 144 | 88 | 4 | 82 | 217 | 49 | 192 | 7.40e-15 | 73.9 |
| Msa0886110 | AT4G19630.1 | 34.021 | 97 | 61 | 1 | 19 | 112 | 8 | 104 | 2.41e-13 | 66.6 |
Find 71 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_1:+44255576 | None:intergenic |
| TGCAGGCTTTCCTCATCTTC+AGG | 0.204361 | 6_1:+44255225 | None:intergenic |
| ATAATTATAGCTTAGGAGTT+TGG | 0.257010 | 6_1:+44255512 | None:intergenic |
| ACGGAGTGAATGATGTCTTT+TGG | 0.280090 | 6_1:-44255068 | Msa0886110:CDS |
| GAAATTGTTGTGTTTGAAAT+AGG | 0.280393 | 6_1:+44257083 | None:intergenic |
| CAAAATCGAATCCATGGATT+TGG | 0.313501 | 6_1:-44255358 | Msa0886110:CDS |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6_1:-44257170 | Msa0886110:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_1:-44257140 | Msa0886110:CDS |
| GCAGGCTTTCCTCATCTTCA+GGG | 0.373078 | 6_1:+44255226 | None:intergenic |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_1:+44257111 | None:intergenic |
| AGAACTGACCAAGCAATTAC+TGG | 0.383163 | 6_1:-44255162 | Msa0886110:CDS |
| ACGTTACCTGAAGCCTCCTT+TGG | 0.398346 | 6_1:+44255114 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_1:-44255325 | Msa0886110:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417304 | 6_1:+44255288 | None:intergenic |
| CTTTCTGACGGAGAACTGAT+AGG | 0.440803 | 6_1:-44255195 | Msa0886110:CDS |
| TCTCAAGATAATTATAGCTT+AGG | 0.451761 | 6_1:+44255505 | None:intergenic |
| TTCCCACAAAATCGAATCCA+TGG | 0.458946 | 6_1:-44255364 | Msa0886110:CDS |
| GAGTTTATTTGAGATATCTT+CGG | 0.461136 | 6_1:+44255248 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_1:-44255338 | Msa0886110:CDS |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_1:-44255613 | Msa0886110:CDS |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.471786 | 6_1:+44255091 | None:intergenic |
| AAAATCAGATCCTGATCGTT+GGG | 0.473476 | 6_1:-44255706 | Msa0886110:CDS |
| GCTAATCCAAAGGAGGCTTC+AGG | 0.474888 | 6_1:-44255120 | Msa0886110:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_1:+44255696 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_1:+44255347 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.482063 | 6_1:-44255289 | Msa0886110:CDS |
| GCTTAGGAGTTTGGATTGAA+AGG | 0.488585 | 6_1:+44255521 | None:intergenic |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_1:-44255580 | Msa0886110:CDS |
| CGACGGAAGCAGAGAAGGTA+TGG | 0.499479 | 6_1:-44257235 | Msa0886110:CDS |
| TGAGACTGAAAAGCTTCAGC+TGG | 0.500611 | 6_1:-44255487 | Msa0886110:CDS |
| ATTAAGCTGACGGATGAAGC+TGG | 0.509640 | 6_1:+44257059 | None:intergenic |
| TTTGCAGAACTTCTTTGAGA+AGG | 0.509914 | 6_1:-44255418 | Msa0886110:CDS |
| TGTTGTGTTTGAAATAGGTT+GGG | 0.510228 | 6_1:+44257088 | None:intergenic |
| TTGTTGTGTTTGAAATAGGT+TGG | 0.516310 | 6_1:+44257087 | None:intergenic |
| GAACTGACCAAGCAATTACT+GGG | 0.527335 | 6_1:-44255161 | Msa0886110:CDS |
| TGGATTAACCAAGCTACCTT+CGG | 0.533584 | 6_1:+44255281 | None:intergenic |
| ATATCTTCGGCAATATTCCA+TGG | 0.535929 | 6_1:+44255261 | None:intergenic |
| TACTAATGTGGCTAATCCAA+AGG | 0.539154 | 6_1:-44255130 | Msa0886110:CDS |
| GAAAATCAGATCCTGATCGT+TGG | 0.543561 | 6_1:-44255707 | Msa0886110:CDS |
| TTCTACTGTAGATCCAGAAA+GGG | 0.545124 | 6_1:-44255589 | Msa0886110:CDS |
| TCATCAGCCGCTGCTGCCGA+CGG | 0.546634 | 6_1:-44257252 | Msa0886110:CDS |
| GTCGAAGCAGCTGCTCGGCA+CGG | 0.548207 | 6_1:-44255087 | Msa0886110:CDS |
| TCAGCGGCGATTGGATGGCA+TGG | 0.549084 | 6_1:-44255457 | Msa0886110:CDS |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.549998 | 6_1:-44255092 | Msa0886110:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_1:+44255613 | None:intergenic |
| TCTGCTTCCGTCGGCAGCAG+CGG | 0.553780 | 6_1:+44257245 | None:intergenic |
| GCTGCCGACGGAAGCAGAGA+AGG | 0.554788 | 6_1:-44257240 | Msa0886110:CDS |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_1:-44255612 | Msa0886110:CDS |
| TCATACGTCTTATGAAGAAA+CGG | 0.563645 | 6_1:+44257210 | None:intergenic |
| GTTCTACTGTAGATCCAGAA+AGG | 0.564434 | 6_1:-44255590 | Msa0886110:CDS |
| AAGGTAGCTTGGTTAATCCA+TGG | 0.568191 | 6_1:-44255278 | Msa0886110:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_1:+44255628 | None:intergenic |
| AAATAAACTCCCTGAAGATG+AGG | 0.580535 | 6_1:-44255235 | Msa0886110:CDS |
| AAGATGCCCCAGTAATTGCT+TGG | 0.581078 | 6_1:+44255154 | None:intergenic |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6_1:+44257173 | None:intergenic |
| GATTGGATGGCATGGAGAAG+AGG | 0.590608 | 6_1:-44255449 | Msa0886110:CDS |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_1:-44255297 | Msa0886110:CDS |
| GCAGCGGCTGATGATGATTG+TGG | 0.600309 | 6_1:+44257261 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_1:+44255618 | None:intergenic |
| CATACCTTCTCTGCTTCCGT+CGG | 0.623107 | 6_1:+44257236 | None:intergenic |
| TTACATAGGTATTAAGCTGA+CGG | 0.626576 | 6_1:+44257049 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6_1:+44257174 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_1:+44257114 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 6_1:+44257170 | None:intergenic |
| TAATGTGGCTAATCCAAAGG+AGG | 0.646897 | 6_1:-44255127 | Msa0886110:CDS |
| ATGTTTCAGTCTGAACAGCA+TGG | 0.654746 | 6_1:+44255024 | None:intergenic |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_1:+44257115 | None:intergenic |
| TCTTCATAAGACGTATGACA+TGG | 0.665030 | 6_1:-44257205 | Msa0886110:CDS |
| TCTGGATCTACAGTAGAACC+CGG | 0.676402 | 6_1:+44255594 | None:intergenic |
| AACTGACCAAGCAATTACTG+GGG | 0.734160 | 6_1:-44255160 | Msa0886110:CDS |
| GGATCTACAGTAGAACCCGG+AGG | 0.764137 | 6_1:+44255597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44256628-44256647 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44256628-44256647 | None:intergenic | 10.0% |
| !!! | ACTATTTATCATGTTTTTAT+AGG | - | chr6_1:44256048-44256067 | Msa0886110:intron | 15.0% |
| !!! | CTATTTATCATGTTTTTATA+GGG | - | chr6_1:44256049-44256068 | Msa0886110:intron | 15.0% |
| !! | AGAATTAAACAATAAAAATC+AGG | + | chr6_1:44256272-44256291 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44256540-44256559 | Msa0886110:intron | 15.0% |
| !!! | ACTATTTATCATGTTTTTAT+AGG | - | chr6_1:44256048-44256067 | Msa0886110:intron | 15.0% |
| !!! | CTATTTATCATGTTTTTATA+GGG | - | chr6_1:44256049-44256068 | Msa0886110:intron | 15.0% |
| !! | AGAATTAAACAATAAAAATC+AGG | + | chr6_1:44256272-44256291 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44256540-44256559 | Msa0886110:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44255368-44255387 | Msa0886110:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44255474-44255493 | Msa0886110:CDS | 20.0% |
| !! | ATATTGAATTATGTCATTGT+CGG | + | chr6_1:44255636-44255655 | None:intergenic | 20.0% |
| !! | TTATCATATTGATATAGTTC+AGG | + | chr6_1:44255907-44255926 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44256964-44256983 | Msa0886110:intron | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44255368-44255387 | Msa0886110:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44255474-44255493 | Msa0886110:CDS | 20.0% |
| !! | ATATTGAATTATGTCATTGT+CGG | + | chr6_1:44255636-44255655 | None:intergenic | 20.0% |
| !! | TTATCATATTGATATAGTTC+AGG | + | chr6_1:44255907-44255926 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44256964-44256983 | Msa0886110:intron | 20.0% |
| !! | GAAATTGTTGTGTTTGAAAT+AGG | + | chr6_1:44255222-44255241 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44255491-44255510 | Msa0886110:CDS | 25.0% |
| ! | ATTATTTCACTGAGTTTAGT+TGG | - | chr6_1:44255514-44255533 | Msa0886110:CDS | 25.0% |
| !!! | TGAGAAATTATAGTCTTGTA+TGG | - | chr6_1:44255577-44255596 | Msa0886110:CDS | 25.0% |
| ! | ATAATCATATATGTCGTTGT+CGG | - | chr6_1:44255654-44255673 | Msa0886110:CDS | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | chr6_1:44255863-44255882 | None:intergenic | 25.0% |
| ! | TCACACATTTCATATACTTT+AGG | + | chr6_1:44255936-44255955 | None:intergenic | 25.0% |
| !!! | TTATCATGTTTTTATAGGGT+AGG | - | chr6_1:44256053-44256072 | Msa0886110:intron | 25.0% |
| !!! | TATCATGTTTTTATAGGGTA+GGG | - | chr6_1:44256054-44256073 | Msa0886110:intron | 25.0% |
| ! | TGAATGTAAACCATCAATTT+AGG | + | chr6_1:44256111-44256130 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44256344-44256363 | Msa0886110:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44256345-44256364 | Msa0886110:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44256373-44256392 | Msa0886110:intron | 25.0% |
| ! | AATCGTTCAAAAAAGTTTGT+AGG | - | chr6_1:44256483-44256502 | Msa0886110:intron | 25.0% |
| ! | AAAAAAGTTTGTAGGTCTTA+TGG | - | chr6_1:44256491-44256510 | Msa0886110:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44256793-44256812 | None:intergenic | 25.0% |
| ! | TCTCAAGATAATTATAGCTT+AGG | + | chr6_1:44256800-44256819 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44256958-44256977 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | + | chr6_1:44257057-44257076 | None:intergenic | 25.0% |
| !! | GAAATTGTTGTGTTTGAAAT+AGG | + | chr6_1:44255222-44255241 | None:intergenic | 25.0% |
| ! | ATTAGGTACAACTTTAGATT+TGG | - | chr6_1:44255491-44255510 | Msa0886110:CDS | 25.0% |
| ! | ATTATTTCACTGAGTTTAGT+TGG | - | chr6_1:44255514-44255533 | Msa0886110:CDS | 25.0% |
| !!! | TGAGAAATTATAGTCTTGTA+TGG | - | chr6_1:44255577-44255596 | Msa0886110:CDS | 25.0% |
| ! | ATAATCATATATGTCGTTGT+CGG | - | chr6_1:44255654-44255673 | Msa0886110:CDS | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | chr6_1:44255863-44255882 | None:intergenic | 25.0% |
| ! | TCACACATTTCATATACTTT+AGG | + | chr6_1:44255936-44255955 | None:intergenic | 25.0% |
| !!! | TTATCATGTTTTTATAGGGT+AGG | - | chr6_1:44256053-44256072 | Msa0886110:intron | 25.0% |
| !!! | TATCATGTTTTTATAGGGTA+GGG | - | chr6_1:44256054-44256073 | Msa0886110:intron | 25.0% |
| ! | TGAATGTAAACCATCAATTT+AGG | + | chr6_1:44256111-44256130 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44256344-44256363 | Msa0886110:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44256345-44256364 | Msa0886110:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44256373-44256392 | Msa0886110:intron | 25.0% |
| ! | AATCGTTCAAAAAAGTTTGT+AGG | - | chr6_1:44256483-44256502 | Msa0886110:intron | 25.0% |
| ! | AAAAAAGTTTGTAGGTCTTA+TGG | - | chr6_1:44256491-44256510 | Msa0886110:intron | 25.0% |
| ! | ATAATTATAGCTTAGGAGTT+TGG | + | chr6_1:44256793-44256812 | None:intergenic | 25.0% |
| ! | TCTCAAGATAATTATAGCTT+AGG | + | chr6_1:44256800-44256819 | None:intergenic | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44256958-44256977 | None:intergenic | 25.0% |
| !! | GAGTTTATTTGAGATATCTT+CGG | + | chr6_1:44257057-44257076 | None:intergenic | 25.0% |
| TCATACGTCTTATGAAGAAA+CGG | + | chr6_1:44255095-44255114 | None:intergenic | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44255162-44255181 | Msa0886110:CDS | 30.0% | |
| ! | TGTTGTGTTTGAAATAGGTT+GGG | + | chr6_1:44255217-44255236 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAATAGGT+TGG | + | chr6_1:44255218-44255237 | None:intergenic | 30.0% |
| TTACATAGGTATTAAGCTGA+CGG | + | chr6_1:44255256-44255275 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44255270-44255289 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44255402-44255421 | Msa0886110:CDS | 30.0% | |
| !!! | TAGGTCTTAATTTTTGGTGT+GGG | - | chr6_1:44255723-44255742 | Msa0886110:intron | 30.0% |
| AAAAAATTTCTGCAAGCATC+TGG | - | chr6_1:44255800-44255819 | Msa0886110:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44255874-44255893 | Msa0886110:intron | 30.0% | |
| TTGAGATAGGATGATAATTC+AGG | - | chr6_1:44256084-44256103 | Msa0886110:intron | 30.0% | |
| TGAGATAGGATGATAATTCA+GGG | - | chr6_1:44256085-44256104 | Msa0886110:intron | 30.0% | |
| ! | CTATCTCTTTTACCAAAACA+AGG | + | chr6_1:44256164-44256183 | None:intergenic | 30.0% |
| TTATAGACGCAGTTTCTAAT+TGG | + | chr6_1:44256234-44256253 | None:intergenic | 30.0% | |
| CTTCATTAACCAAAAACTTC+AGG | + | chr6_1:44256437-44256456 | None:intergenic | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44256566-44256585 | Msa0886110:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44256567-44256586 | Msa0886110:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44256644-44256663 | Msa0886110:intron | 30.0% | |
| TCATACGTCTTATGAAGAAA+CGG | + | chr6_1:44255095-44255114 | None:intergenic | 30.0% | |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44255162-44255181 | Msa0886110:CDS | 30.0% | |
| ! | TGTTGTGTTTGAAATAGGTT+GGG | + | chr6_1:44255217-44255236 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAATAGGT+TGG | + | chr6_1:44255218-44255237 | None:intergenic | 30.0% |
| TTACATAGGTATTAAGCTGA+CGG | + | chr6_1:44255256-44255275 | None:intergenic | 30.0% | |
| ! | TAGCATGAATTGACTTACAT+AGG | + | chr6_1:44255270-44255289 | None:intergenic | 30.0% |
| CTTCATCGAATTTCAATTAG+TGG | - | chr6_1:44255402-44255421 | Msa0886110:CDS | 30.0% | |
| !!! | TAGGTCTTAATTTTTGGTGT+GGG | - | chr6_1:44255723-44255742 | Msa0886110:intron | 30.0% |
| AAAAAATTTCTGCAAGCATC+TGG | - | chr6_1:44255800-44255819 | Msa0886110:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44255874-44255893 | Msa0886110:intron | 30.0% | |
| TTGAGATAGGATGATAATTC+AGG | - | chr6_1:44256084-44256103 | Msa0886110:intron | 30.0% | |
| TGAGATAGGATGATAATTCA+GGG | - | chr6_1:44256085-44256104 | Msa0886110:intron | 30.0% | |
| ! | CTATCTCTTTTACCAAAACA+AGG | + | chr6_1:44256164-44256183 | None:intergenic | 30.0% |
| TTATAGACGCAGTTTCTAAT+TGG | + | chr6_1:44256234-44256253 | None:intergenic | 30.0% | |
| CTTCATTAACCAAAAACTTC+AGG | + | chr6_1:44256437-44256456 | None:intergenic | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44256566-44256585 | Msa0886110:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44256567-44256586 | Msa0886110:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44256644-44256663 | Msa0886110:intron | 30.0% | |
| TCTTCATAAGACGTATGACA+TGG | - | chr6_1:44255097-44255116 | Msa0886110:CDS | 35.0% | |
| ATCCATCTTTCAACATTCTC+AGG | + | chr6_1:44255558-44255577 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | chr6_1:44255716-44255735 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+TGG | - | chr6_1:44255717-44255736 | Msa0886110:CDS | 35.0% |
| !!! | GTAGGTCTTAATTTTTGGTG+TGG | - | chr6_1:44255722-44255741 | Msa0886110:intron | 35.0% |
| ATATAGTTCAGGAACGAAAC+CGG | + | chr6_1:44255896-44255915 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | - | chr6_1:44256071-44256090 | Msa0886110:intron | 35.0% |
| TAATTCAGGGCCTAAATTGA+TGG | - | chr6_1:44256098-44256117 | Msa0886110:intron | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44256425-44256444 | None:intergenic | 35.0% | |
| !! | GATTTGCTTCCTGAAGTTTT+TGG | - | chr6_1:44256425-44256444 | Msa0886110:intron | 35.0% |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44256596-44256615 | Msa0886110:intron | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | - | chr6_1:44256713-44256732 | Msa0886110:intron | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | - | chr6_1:44256884-44256903 | Msa0886110:intron | 35.0% |
| ! | ATCCATGGATTCGATTTTGT+GGG | + | chr6_1:44256943-44256962 | None:intergenic | 35.0% |
| ! | AATCCATGGATTCGATTTTG+TGG | + | chr6_1:44256944-44256963 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44256944-44256963 | Msa0886110:intron | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | + | chr6_1:44257044-44257063 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | - | chr6_1:44257067-44257086 | Msa0886110:CDS | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | - | chr6_1:44257095-44257114 | Msa0886110:CDS | 35.0% | |
| TACTAATGTGGCTAATCCAA+AGG | - | chr6_1:44257172-44257191 | Msa0886110:CDS | 35.0% | |
| TCTTCATAAGACGTATGACA+TGG | - | chr6_1:44255097-44255116 | Msa0886110:CDS | 35.0% | |
| ATCCATCTTTCAACATTCTC+AGG | + | chr6_1:44255558-44255577 | None:intergenic | 35.0% | |
| AAATTAAGACCTACGAAGCA+AGG | + | chr6_1:44255716-44255735 | None:intergenic | 35.0% | |
| ! | GCTTCGTAGGTCTTAATTTT+TGG | - | chr6_1:44255717-44255736 | Msa0886110:CDS | 35.0% |
| !!! | GTAGGTCTTAATTTTTGGTG+TGG | - | chr6_1:44255722-44255741 | Msa0886110:intron | 35.0% |
| ATATAGTTCAGGAACGAAAC+CGG | + | chr6_1:44255896-44255915 | None:intergenic | 35.0% | |
| ! | GTAGGGACTAAATTTGAGAT+AGG | - | chr6_1:44256071-44256090 | Msa0886110:intron | 35.0% |
| TAATTCAGGGCCTAAATTGA+TGG | - | chr6_1:44256098-44256117 | Msa0886110:intron | 35.0% | |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44256425-44256444 | None:intergenic | 35.0% | |
| !! | GATTTGCTTCCTGAAGTTTT+TGG | - | chr6_1:44256425-44256444 | Msa0886110:intron | 35.0% |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44256596-44256615 | Msa0886110:intron | 35.0% | |
| TTCTACTGTAGATCCAGAAA+GGG | - | chr6_1:44256713-44256732 | Msa0886110:intron | 35.0% | |
| ! | TTTGCAGAACTTCTTTGAGA+AGG | - | chr6_1:44256884-44256903 | Msa0886110:intron | 35.0% |
| ! | ATCCATGGATTCGATTTTGT+GGG | + | chr6_1:44256943-44256962 | None:intergenic | 35.0% |
| ! | AATCCATGGATTCGATTTTG+TGG | + | chr6_1:44256944-44256963 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44256944-44256963 | Msa0886110:intron | 35.0% | |
| ATATCTTCGGCAATATTCCA+TGG | + | chr6_1:44257044-44257063 | None:intergenic | 35.0% | |
| AAATAAACTCCCTGAAGATG+AGG | - | chr6_1:44257067-44257086 | Msa0886110:CDS | 35.0% | |
| CTGCAGAAAAATCTTTCTGA+CGG | - | chr6_1:44257095-44257114 | Msa0886110:CDS | 35.0% | |
| TACTAATGTGGCTAATCCAA+AGG | - | chr6_1:44257172-44257191 | Msa0886110:CDS | 35.0% | |
| GACCTGAGAATGTTGAAAGA+TGG | - | chr6_1:44255553-44255572 | Msa0886110:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | chr6_1:44255748-44255767 | Msa0886110:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44255816-44255835 | Msa0886110:intron | 40.0% |
| CAAAACAAGGACGAGTTGTA+TGG | + | chr6_1:44256151-44256170 | None:intergenic | 40.0% | |
| !! | CATACAACTCGTCCTTGTTT+TGG | - | chr6_1:44256149-44256168 | Msa0886110:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44256595-44256614 | Msa0886110:intron | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | - | chr6_1:44256712-44256731 | Msa0886110:intron | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+AGG | + | chr6_1:44256784-44256803 | None:intergenic | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | chr6_1:44256829-44256848 | Msa0886110:intron | 40.0% |
| TTCCCACAAAATCGAATCCA+TGG | - | chr6_1:44256938-44256957 | Msa0886110:intron | 40.0% | |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44256977-44256996 | Msa0886110:intron | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | + | chr6_1:44257024-44257043 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | - | chr6_1:44257024-44257043 | Msa0886110:intron | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | + | chr6_1:44257097-44257116 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | - | chr6_1:44257140-44257159 | Msa0886110:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | - | chr6_1:44257141-44257160 | Msa0886110:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | - | chr6_1:44257142-44257161 | Msa0886110:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+TGG | - | chr6_1:44257160-44257179 | Msa0886110:CDS | 40.0% |
| TAATGTGGCTAATCCAAAGG+AGG | - | chr6_1:44257175-44257194 | Msa0886110:CDS | 40.0% | |
| ! | ACGGAGTGAATGATGTCTTT+TGG | - | chr6_1:44257234-44257253 | Msa0886110:CDS | 40.0% |
| ! | CGGAGTGAATGATGTCTTTT+GGG | - | chr6_1:44257235-44257254 | Msa0886110:CDS | 40.0% |
| GACCTGAGAATGTTGAAAGA+TGG | - | chr6_1:44255553-44255572 | Msa0886110:CDS | 40.0% | |
| ! | TGTGAATTGGTGGGTGATTT+AGG | - | chr6_1:44255748-44255767 | Msa0886110:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44255816-44255835 | Msa0886110:intron | 40.0% |
| CAAAACAAGGACGAGTTGTA+TGG | + | chr6_1:44256151-44256170 | None:intergenic | 40.0% | |
| !! | CATACAACTCGTCCTTGTTT+TGG | - | chr6_1:44256149-44256168 | Msa0886110:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44256595-44256614 | Msa0886110:intron | 40.0% | |
| GTTCTACTGTAGATCCAGAA+AGG | - | chr6_1:44256712-44256731 | Msa0886110:intron | 40.0% | |
| GCTTAGGAGTTTGGATTGAA+AGG | + | chr6_1:44256784-44256803 | None:intergenic | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | chr6_1:44256829-44256848 | Msa0886110:intron | 40.0% |
| TTCCCACAAAATCGAATCCA+TGG | - | chr6_1:44256938-44256957 | Msa0886110:intron | 40.0% | |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44256977-44256996 | Msa0886110:intron | 40.0% | |
| TGGATTAACCAAGCTACCTT+CGG | + | chr6_1:44257024-44257043 | None:intergenic | 40.0% | |
| AAGGTAGCTTGGTTAATCCA+TGG | - | chr6_1:44257024-44257043 | Msa0886110:intron | 40.0% | |
| ! | CGTCAGAAAGATTTTTCTGC+AGG | + | chr6_1:44257097-44257116 | None:intergenic | 40.0% |
| AGAACTGACCAAGCAATTAC+TGG | - | chr6_1:44257140-44257159 | Msa0886110:CDS | 40.0% | |
| GAACTGACCAAGCAATTACT+GGG | - | chr6_1:44257141-44257160 | Msa0886110:CDS | 40.0% | |
| AACTGACCAAGCAATTACTG+GGG | - | chr6_1:44257142-44257161 | Msa0886110:CDS | 40.0% | |
| !! | TGGGGCATCTTTTACTAATG+TGG | - | chr6_1:44257160-44257179 | Msa0886110:CDS | 40.0% |
| TAATGTGGCTAATCCAAAGG+AGG | - | chr6_1:44257175-44257194 | Msa0886110:CDS | 40.0% | |
| ! | ACGGAGTGAATGATGTCTTT+TGG | - | chr6_1:44257234-44257253 | Msa0886110:CDS | 40.0% |
| ! | CGGAGTGAATGATGTCTTTT+GGG | - | chr6_1:44257235-44257254 | Msa0886110:CDS | 40.0% |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44255131-44255150 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44255132-44255151 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44255135-44255154 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44255132-44255151 | Msa0886110:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44255194-44255213 | None:intergenic | 45.0% | |
| ! | ATTAAGCTGACGGATGAAGC+TGG | + | chr6_1:44255246-44255265 | None:intergenic | 45.0% |
| ! | TCCTTGGATTAGGTGTGTCA+TGG | + | chr6_1:44255689-44255708 | None:intergenic | 45.0% |
| ! | TTTGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44255735-44255754 | Msa0886110:intron | 45.0% |
| TTCTGCAAGCATCTGGATCT+TGG | - | chr6_1:44255807-44255826 | Msa0886110:intron | 45.0% | |
| GTTCACGAATGTGTCACGAA+CGG | - | chr6_1:44256201-44256220 | Msa0886110:intron | 45.0% | |
| CGTACACATCTCAAGCATCT+AGG | - | chr6_1:44256296-44256315 | Msa0886110:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44256422-44256441 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44256677-44256696 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44256687-44256706 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | + | chr6_1:44256711-44256730 | None:intergenic | 45.0% | |
| TGAGACTGAAAAGCTTCAGC+TGG | - | chr6_1:44256815-44256834 | Msa0886110:intron | 45.0% | |
| CTTTCTGACGGAGAACTGAT+AGG | - | chr6_1:44257107-44257126 | Msa0886110:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | + | chr6_1:44257151-44257170 | None:intergenic | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44255131-44255150 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44255132-44255151 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44255135-44255154 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44255132-44255151 | Msa0886110:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44255194-44255213 | None:intergenic | 45.0% | |
| ! | ATTAAGCTGACGGATGAAGC+TGG | + | chr6_1:44255246-44255265 | None:intergenic | 45.0% |
| ! | TCCTTGGATTAGGTGTGTCA+TGG | + | chr6_1:44255689-44255708 | None:intergenic | 45.0% |
| ! | TTTGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44255735-44255754 | Msa0886110:intron | 45.0% |
| TTCTGCAAGCATCTGGATCT+TGG | - | chr6_1:44255807-44255826 | Msa0886110:intron | 45.0% | |
| GTTCACGAATGTGTCACGAA+CGG | - | chr6_1:44256201-44256220 | Msa0886110:intron | 45.0% | |
| CGTACACATCTCAAGCATCT+AGG | - | chr6_1:44256296-44256315 | Msa0886110:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44256422-44256441 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44256677-44256696 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44256687-44256706 | None:intergenic | 45.0% | |
| TCTGGATCTACAGTAGAACC+CGG | + | chr6_1:44256711-44256730 | None:intergenic | 45.0% | |
| TGAGACTGAAAAGCTTCAGC+TGG | - | chr6_1:44256815-44256834 | Msa0886110:intron | 45.0% | |
| CTTTCTGACGGAGAACTGAT+AGG | - | chr6_1:44257107-44257126 | Msa0886110:CDS | 45.0% | |
| AAGATGCCCCAGTAATTGCT+TGG | + | chr6_1:44257151-44257170 | None:intergenic | 45.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44255069-44255088 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44255190-44255209 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44255191-44255210 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCATGGCGT+CGG | + | chr6_1:44255683-44255702 | None:intergenic | 50.0% | |
| GCCATGACACACCTAATCCA+AGG | - | chr6_1:44255685-44255704 | Msa0886110:CDS | 50.0% | |
| GCAAGGACACTCCTTGGATT+AGG | + | chr6_1:44255699-44255718 | None:intergenic | 50.0% | |
| TACGAAGCAAGGACACTCCT+TGG | + | chr6_1:44255705-44255724 | None:intergenic | 50.0% | |
| !! | AAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44255704-44255723 | Msa0886110:CDS | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44255739-44255758 | Msa0886110:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44256609-44256628 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44256689-44256708 | Msa0886110:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44256690-44256709 | Msa0886110:intron | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44256722-44256741 | Msa0886110:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44256729-44256748 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | - | chr6_1:44256836-44256855 | Msa0886110:intron | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+TGG | - | chr6_1:44256840-44256859 | Msa0886110:intron | 50.0% |
| GATTGGATGGCATGGAGAAG+AGG | - | chr6_1:44256853-44256872 | Msa0886110:intron | 50.0% | |
| GCAGGCTTTCCTCATCTTCA+GGG | + | chr6_1:44257079-44257098 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | + | chr6_1:44257080-44257099 | None:intergenic | 50.0% | |
| GCTAATCCAAAGGAGGCTTC+AGG | - | chr6_1:44257182-44257201 | Msa0886110:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | chr6_1:44257191-44257210 | None:intergenic | 50.0% | |
| CATACCTTCTCTGCTTCCGT+CGG | + | chr6_1:44255069-44255088 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44255190-44255209 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44255191-44255210 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCATGGCGT+CGG | + | chr6_1:44255683-44255702 | None:intergenic | 50.0% | |
| GCCATGACACACCTAATCCA+AGG | - | chr6_1:44255685-44255704 | Msa0886110:CDS | 50.0% | |
| GCAAGGACACTCCTTGGATT+AGG | + | chr6_1:44255699-44255718 | None:intergenic | 50.0% | |
| TACGAAGCAAGGACACTCCT+TGG | + | chr6_1:44255705-44255724 | None:intergenic | 50.0% | |
| !! | AAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44255704-44255723 | Msa0886110:CDS | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44255739-44255758 | Msa0886110:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44256609-44256628 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44256689-44256708 | Msa0886110:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44256690-44256709 | Msa0886110:intron | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44256722-44256741 | Msa0886110:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44256729-44256748 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | - | chr6_1:44256836-44256855 | Msa0886110:intron | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+TGG | - | chr6_1:44256840-44256859 | Msa0886110:intron | 50.0% |
| GATTGGATGGCATGGAGAAG+AGG | - | chr6_1:44256853-44256872 | Msa0886110:intron | 50.0% | |
| GCAGGCTTTCCTCATCTTCA+GGG | + | chr6_1:44257079-44257098 | None:intergenic | 50.0% | |
| TGCAGGCTTTCCTCATCTTC+AGG | + | chr6_1:44257080-44257099 | None:intergenic | 50.0% | |
| GCTAATCCAAAGGAGGCTTC+AGG | - | chr6_1:44257182-44257201 | Msa0886110:CDS | 50.0% | |
| ACGTTACCTGAAGCCTCCTT+TGG | + | chr6_1:44257191-44257210 | None:intergenic | 50.0% | |
| ! | GCAGCGGCTGATGATGATTG+TGG | + | chr6_1:44255044-44255063 | None:intergenic | 55.0% |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44255067-44255086 | Msa0886110:CDS | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44255738-44255757 | Msa0886110:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44256417-44256436 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44256418-44256437 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44256419-44256438 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44256692-44256711 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | + | chr6_1:44256708-44256727 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44257017-44257036 | None:intergenic | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44257210-44257229 | Msa0886110:CDS | 55.0% | |
| ! | GCAGCGGCTGATGATGATTG+TGG | + | chr6_1:44255044-44255063 | None:intergenic | 55.0% |
| CGACGGAAGCAGAGAAGGTA+TGG | - | chr6_1:44255067-44255086 | Msa0886110:CDS | 55.0% | |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44255738-44255757 | Msa0886110:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44256417-44256436 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44256418-44256437 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44256419-44256438 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44256692-44256711 | None:intergenic | 55.0% | |
| GGATCTACAGTAGAACCCGG+AGG | + | chr6_1:44256708-44256727 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44257017-44257036 | None:intergenic | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44257210-44257229 | Msa0886110:CDS | 55.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | - | chr6_1:44256845-44256864 | Msa0886110:intron | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | - | chr6_1:44257005-44257024 | Msa0886110:intron | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44257013-44257032 | Msa0886110:intron | 60.0% | |
| TCAGCGGCGATTGGATGGCA+TGG | - | chr6_1:44256845-44256864 | Msa0886110:intron | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | - | chr6_1:44257005-44257024 | Msa0886110:intron | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44257013-44257032 | Msa0886110:intron | 60.0% | |
| TCATCAGCCGCTGCTGCCGA+CGG | - | chr6_1:44255050-44255069 | Msa0886110:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+CGG | + | chr6_1:44255060-44255079 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44255062-44255081 | Msa0886110:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44257214-44257233 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | chr6_1:44257215-44257234 | Msa0886110:CDS | 65.0% | |
| TCATCAGCCGCTGCTGCCGA+CGG | - | chr6_1:44255050-44255069 | Msa0886110:CDS | 65.0% | |
| TCTGCTTCCGTCGGCAGCAG+CGG | + | chr6_1:44255060-44255079 | None:intergenic | 65.0% | |
| GCTGCCGACGGAAGCAGAGA+AGG | - | chr6_1:44255062-44255081 | Msa0886110:CDS | 65.0% | |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44257214-44257233 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+CGG | - | chr6_1:44257215-44257234 | Msa0886110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44255029 | 44257295 | 44255029 | ID=Msa0886110;Name=Msa0886110 |
| chr6_1 | mRNA | 44255029 | 44257295 | 44255029 | ID=Msa0886110-mRNA-1;Parent=Msa0886110;Name=Msa0886110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|316 |
| chr6_1 | exon | 44257053 | 44257295 | 44257053 | ID=Msa0886110-mRNA-1:exon:9495;Parent=Msa0886110-mRNA-1 |
| chr6_1 | exon | 44255029 | 44255736 | 44255029 | ID=Msa0886110-mRNA-1:exon:9494;Parent=Msa0886110-mRNA-1 |
| chr6_1 | CDS | 44257053 | 44257295 | 44257053 | ID=Msa0886110-mRNA-1:cds;Parent=Msa0886110-mRNA-1 |
| chr6_1 | CDS | 44255029 | 44255736 | 44255029 | ID=Msa0886110-mRNA-1:cds;Parent=Msa0886110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
