Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886120 | XP_013452015.1 | 70.948 | 327 | 65 | 2 | 1 | 297 | 1 | 327 | 1.65e-162 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886120 | sp|Q94BZ5|HSFA5_ARATH | 55.983 | 234 | 101 | 2 | 1 | 232 | 1 | 234 | 1.14e-85 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886120 | A0A072UAD0 | 70.948 | 327 | 65 | 2 | 1 | 297 | 1 | 327 | 7.86e-163 | 465 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0886120 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886120 | MtrunA17_Chr6g0467041 | 70.948 | 327 | 65 | 2 | 1 | 297 | 1 | 327 | 1.51e-166 | 465 |
| Msa0886120 | MtrunA17_Chr8g0378061 | 75.899 | 278 | 23 | 1 | 23 | 256 | 23 | 300 | 6.82e-148 | 424 |
| Msa0886120 | MtrunA17_Chr8g0378061 | 79.545 | 44 | 9 | 0 | 256 | 299 | 414 | 457 | 1.53e-15 | 76.6 |
| Msa0886120 | MtrunA17_Chr2g0330821 | 56.631 | 279 | 92 | 5 | 4 | 254 | 62 | 339 | 1.08e-96 | 289 |
| Msa0886120 | MtrunA17_Chr2g0330841 | 53.361 | 238 | 60 | 3 | 64 | 256 | 29 | 260 | 2.80e-72 | 228 |
| Msa0886120 | MtrunA17_Chr5g0410881 | 50.711 | 211 | 90 | 4 | 22 | 218 | 32 | 242 | 2.50e-65 | 213 |
| Msa0886120 | MtrunA17_Chr8g0379701 | 48.792 | 207 | 96 | 3 | 15 | 216 | 5 | 206 | 3.02e-59 | 194 |
| Msa0886120 | MtrunA17_Chr4g0039891 | 44.976 | 209 | 103 | 3 | 20 | 216 | 10 | 218 | 3.98e-56 | 188 |
| Msa0886120 | MtrunA17_Chr1g0204741 | 43.498 | 223 | 109 | 6 | 7 | 215 | 20 | 239 | 2.22e-52 | 174 |
| Msa0886120 | MtrunA17_Chr7g0260331 | 45.411 | 207 | 103 | 4 | 19 | 215 | 46 | 252 | 3.96e-51 | 172 |
| Msa0886120 | MtrunA17_Chr3g0135831 | 35.333 | 300 | 172 | 7 | 19 | 297 | 43 | 341 | 3.96e-51 | 172 |
| Msa0886120 | MtrunA17_Chr1g0185131 | 41.014 | 217 | 116 | 3 | 22 | 233 | 32 | 241 | 1.11e-47 | 162 |
| Msa0886120 | MtrunA17_Chr4g0071051 | 44.624 | 186 | 99 | 2 | 19 | 203 | 98 | 280 | 2.70e-46 | 161 |
| Msa0886120 | MtrunA17_Chr8g0392001 | 48.205 | 195 | 88 | 6 | 20 | 201 | 20 | 214 | 7.17e-46 | 159 |
| Msa0886120 | MtrunA17_Chr3g0134031 | 66.667 | 102 | 34 | 0 | 12 | 113 | 14 | 115 | 2.87e-45 | 157 |
| Msa0886120 | MtrunA17_Chr6g0485571 | 40.654 | 214 | 100 | 2 | 20 | 219 | 9 | 209 | 3.74e-43 | 150 |
| Msa0886120 | MtrunA17_Chr5g0402291 | 60.185 | 108 | 43 | 0 | 15 | 122 | 2 | 109 | 1.43e-42 | 147 |
| Msa0886120 | MtrunA17_Chr5g0441531 | 68.817 | 93 | 29 | 0 | 21 | 113 | 24 | 116 | 3.45e-42 | 145 |
| Msa0886120 | MtrunA17_Chr5g0397881 | 59.259 | 108 | 44 | 0 | 6 | 113 | 8 | 115 | 1.15e-41 | 147 |
| Msa0886120 | MtrunA17_Chr2g0284481 | 58.333 | 108 | 45 | 0 | 12 | 119 | 5 | 112 | 9.63e-41 | 145 |
| Msa0886120 | MtrunA17_Chr6g0472421 | 62.366 | 93 | 35 | 0 | 21 | 113 | 32 | 124 | 3.49e-38 | 137 |
| Msa0886120 | MtrunA17_Chr7g0257331 | 59.140 | 93 | 38 | 0 | 21 | 113 | 21 | 113 | 4.70e-38 | 134 |
| Msa0886120 | MtrunA17_Chr1g0203601 | 60.000 | 95 | 38 | 0 | 21 | 115 | 17 | 111 | 1.98e-37 | 134 |
| Msa0886120 | MtrunA17_Chr4g0047421 | 57.732 | 97 | 37 | 1 | 21 | 113 | 32 | 128 | 3.40e-34 | 124 |
| Msa0886120 | MtrunA17_Chr8g0375041 | 55.914 | 93 | 41 | 0 | 21 | 113 | 8 | 100 | 8.64e-33 | 121 |
| Msa0886120 | MtrunA17_Chr1g0179321 | 62.903 | 62 | 23 | 0 | 20 | 81 | 47 | 108 | 7.48e-25 | 96.3 |
| Msa0886120 | MtrunA17_Chr4g0023771 | 57.971 | 69 | 29 | 0 | 11 | 79 | 4 | 72 | 2.23e-20 | 84.3 |
| Msa0886120 | MtrunA17_Chr1g0179311 | 30.818 | 159 | 99 | 4 | 61 | 216 | 1 | 151 | 3.68e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0886120 | AT4G13980.1 | 55.983 | 234 | 101 | 2 | 1 | 232 | 1 | 234 | 1.16e-86 | 267 |
| Msa0886120 | AT4G17750.1 | 48.148 | 216 | 91 | 4 | 22 | 216 | 52 | 267 | 4.87e-60 | 199 |
| Msa0886120 | AT1G32330.2 | 46.383 | 235 | 107 | 5 | 1 | 216 | 16 | 250 | 9.15e-60 | 198 |
| Msa0886120 | AT1G32330.1 | 46.383 | 235 | 107 | 5 | 1 | 216 | 16 | 250 | 9.97e-60 | 198 |
| Msa0886120 | AT3G02990.1 | 43.777 | 233 | 118 | 4 | 8 | 228 | 9 | 240 | 1.46e-59 | 197 |
| Msa0886120 | AT5G16820.1 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 4.25e-59 | 196 |
| Msa0886120 | AT5G16820.2 | 48.341 | 211 | 94 | 5 | 20 | 216 | 25 | 234 | 4.25e-59 | 196 |
| Msa0886120 | AT5G45710.3 | 38.889 | 306 | 148 | 8 | 20 | 295 | 11 | 307 | 4.41e-55 | 182 |
| Msa0886120 | AT5G45710.1 | 38.889 | 306 | 148 | 8 | 20 | 295 | 11 | 307 | 4.41e-55 | 182 |
| Msa0886120 | AT4G18880.1 | 48.585 | 212 | 99 | 3 | 15 | 220 | 8 | 215 | 2.92e-53 | 179 |
| Msa0886120 | AT2G26150.1 | 42.793 | 222 | 119 | 4 | 19 | 232 | 41 | 262 | 9.40e-52 | 174 |
| Msa0886120 | AT2G26150.4 | 42.793 | 222 | 119 | 4 | 19 | 232 | 41 | 262 | 9.40e-52 | 174 |
| Msa0886120 | AT3G51910.1 | 42.654 | 211 | 104 | 5 | 22 | 226 | 29 | 228 | 1.59e-48 | 163 |
| Msa0886120 | AT3G22830.1 | 40.278 | 216 | 116 | 3 | 19 | 221 | 58 | 273 | 6.70e-48 | 165 |
| Msa0886120 | AT5G03720.2 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 1.44e-46 | 162 |
| Msa0886120 | AT5G03720.1 | 42.079 | 202 | 109 | 3 | 20 | 213 | 53 | 254 | 1.44e-46 | 162 |
| Msa0886120 | AT3G24520.1 | 46.243 | 173 | 73 | 3 | 20 | 191 | 15 | 168 | 1.67e-45 | 157 |
| Msa0886120 | AT1G67970.1 | 44.792 | 192 | 93 | 5 | 20 | 201 | 17 | 205 | 1.68e-44 | 155 |
| Msa0886120 | AT1G46264.1 | 62.500 | 112 | 32 | 1 | 21 | 122 | 33 | 144 | 1.87e-44 | 154 |
| Msa0886120 | AT5G43840.1 | 42.246 | 187 | 96 | 3 | 21 | 205 | 18 | 194 | 7.82e-43 | 149 |
| Msa0886120 | AT5G54070.1 | 43.169 | 183 | 98 | 2 | 20 | 201 | 69 | 246 | 1.05e-41 | 147 |
| Msa0886120 | AT3G63350.1 | 39.665 | 179 | 107 | 1 | 19 | 196 | 25 | 203 | 3.49e-40 | 142 |
| Msa0886120 | AT4G36990.1 | 45.455 | 176 | 62 | 4 | 11 | 153 | 2 | 176 | 6.08e-39 | 138 |
| Msa0886120 | AT4G11660.1 | 61.000 | 100 | 39 | 0 | 14 | 113 | 51 | 150 | 8.00e-39 | 140 |
| Msa0886120 | AT5G62020.1 | 50.420 | 119 | 58 | 1 | 1 | 118 | 1 | 119 | 5.18e-38 | 136 |
| Msa0886120 | AT2G41690.1 | 52.174 | 115 | 55 | 0 | 22 | 136 | 40 | 154 | 2.59e-37 | 133 |
| Msa0886120 | AT4G18870.1 | 46.591 | 88 | 47 | 0 | 22 | 109 | 146 | 233 | 9.23e-23 | 95.9 |
| Msa0886120 | AT4G18870.1 | 44.792 | 96 | 52 | 1 | 14 | 109 | 5 | 99 | 1.23e-21 | 92.8 |
| Msa0886120 | AT2G26150.3 | 32.000 | 200 | 121 | 6 | 43 | 232 | 13 | 207 | 6.16e-17 | 79.7 |
| Msa0886120 | AT2G26150.2 | 32.000 | 200 | 121 | 6 | 43 | 232 | 13 | 207 | 6.16e-17 | 79.7 |
| Msa0886120 | AT1G77570.1 | 42.391 | 92 | 49 | 3 | 19 | 106 | 22 | 113 | 8.04e-17 | 76.3 |
| Msa0886120 | AT5G45710.4 | 29.545 | 220 | 116 | 9 | 106 | 295 | 1 | 211 | 8.09e-14 | 70.1 |
| Msa0886120 | AT5G45710.2 | 29.545 | 220 | 116 | 9 | 106 | 295 | 1 | 211 | 8.09e-14 | 70.1 |
| Msa0886120 | AT4G19630.1 | 34.021 | 97 | 61 | 1 | 19 | 112 | 8 | 104 | 2.13e-13 | 66.6 |
Find 69 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCAATGCTGCCCTTTC+TGG | -0.010683 | 6_1:+44292559 | None:intergenic |
| TTTCTTTGAGAAGGCTCTTC+AGG | 0.261460 | 6_1:-44292392 | Msa0886120:CDS |
| GAAATTGCTGTGTTTGAAAT+AGG | 0.280393 | 6_1:+44293768 | None:intergenic |
| ATAATTATAGCTTAAGAGTT+TGG | 0.284728 | 6_1:+44292495 | None:intergenic |
| CCACAGATGAGATCGTTTCT+TGG | 0.319260 | 6_1:-44293855 | Msa0886120:CDS |
| CAAAATCGAATCCATGGATT+TGG | 0.330894 | 6_1:-44292341 | Msa0886120:CDS |
| AAGGAGTGAATGATGTGTTT+TGG | 0.360172 | 6_1:-44292123 | Msa0886120:CDS |
| ATAACAAAAGCTTCATCGTT+TGG | 0.362747 | 6_1:-44293825 | Msa0886120:CDS |
| AGAAGAACGCGAGAGAATTC+AGG | 0.373908 | 6_1:+44293796 | None:intergenic |
| ACATTACCTGAAGCCTCCTT+TGG | 0.373921 | 6_1:+44292169 | None:intergenic |
| TAAGAAAAGGCGATTGTCTC+AGG | 0.414889 | 6_1:-44292308 | Msa0886120:CDS |
| ACCAAGCTACCTTCGGCAAC+AGG | 0.417714 | 6_1:+44292271 | None:intergenic |
| AGCTTAAGAGTTTGGATTGA+AGG | 0.419735 | 6_1:+44292503 | None:intergenic |
| TGCTGTGTTTGAAATAGGTT+GGG | 0.448167 | 6_1:+44293773 | None:intergenic |
| TCTGCTTGCGTCGGCAGCAG+TGG | 0.456433 | 6_1:+44293930 | None:intergenic |
| TTGCTGTGTTTGAAATAGGT+TGG | 0.457272 | 6_1:+44293772 | None:intergenic |
| GCCGAGCAGCTGCTTCGACT+TGG | 0.459497 | 6_1:+44292146 | None:intergenic |
| TGGAAACTTATAATAAGAAA+AGG | 0.461564 | 6_1:-44292321 | Msa0886120:CDS |
| CCACAGTCATAGTCATCCTC+CGG | 0.469987 | 6_1:-44292596 | Msa0886120:CDS |
| AAAATCAGATCCTGATCGTT+GGG | 0.473476 | 6_1:-44292689 | Msa0886120:CDS |
| TTCCCGCAAAATCGAATCCA+TGG | 0.478636 | 6_1:-44292347 | Msa0886120:CDS |
| TTGGCAAACTCCCAACGATC+AGG | 0.478885 | 6_1:+44292679 | None:intergenic |
| GCTTAAGAGTTTGGATTGAA+GGG | 0.480417 | 6_1:+44292504 | None:intergenic |
| ATTATAAGTTTCCAAATCCA+TGG | 0.481800 | 6_1:+44292330 | None:intergenic |
| GCTGATCCAAAGGAGGCTTC+AGG | 0.482903 | 6_1:-44292175 | Msa0886120:CDS |
| TTTGCAGAATTTCTTTGAGA+AGG | 0.483479 | 6_1:-44292401 | Msa0886120:CDS |
| GAAGCCTCCTTTGGATCAGC+GGG | 0.484852 | 6_1:+44292178 | None:intergenic |
| CGACGCAAGCAGAGAAGGTA+TGG | 0.492366 | 6_1:-44293920 | Msa0886120:CDS |
| AGATCCAGAAAGGGCAGCAT+TGG | 0.494908 | 6_1:-44292563 | Msa0886120:CDS |
| TGAGACAGAAAAGCTTCAGC+TGG | 0.500611 | 6_1:-44292470 | Msa0886120:CDS |
| ATTGAGCTGACGGATGAAGC+TGG | 0.506271 | 6_1:+44293744 | None:intergenic |
| GCCTGTTGCCGAAGGTAGCT+TGG | 0.510527 | 6_1:-44292272 | Msa0886120:CDS |
| TTCTCTCAGAATCTTTCTGA+AGG | 0.511282 | 6_1:-44292232 | Msa0886120:CDS |
| AACTGACCCCGCTGATCCAA+AGG | 0.526560 | 6_1:-44292185 | Msa0886120:CDS |
| CTTTCTGAAGGAGAACTGAC+AGG | 0.534056 | 6_1:-44292220 | Msa0886120:CDS |
| GTCGAAGCAGCTGCTCGGCA+AGG | 0.540320 | 6_1:-44292142 | Msa0886120:CDS |
| AACAGCATGGACTTTCAGTA+AGG | 0.541453 | 6_1:+44292092 | None:intergenic |
| AAGGTCAACCAAGCTACCTT+CGG | 0.541708 | 6_1:+44292264 | None:intergenic |
| TCTGAGAGAAATTGCTAGGA+AGG | 0.542451 | 6_1:+44292245 | None:intergenic |
| GAAAATCAGATCCTGATCGT+TGG | 0.543561 | 6_1:-44292690 | Msa0886120:CDS |
| TCATACGTCTTCTGAAGAAA+CGG | 0.543831 | 6_1:+44293895 | None:intergenic |
| TCAGCGGCGATTGGAAGGCA+TGG | 0.549084 | 6_1:-44292440 | Msa0886120:CDS |
| CCGGAGGATGACTATGACTG+TGG | 0.551542 | 6_1:+44292596 | None:intergenic |
| TCCAAGTCGAAGCAGCTGCT+CGG | 0.556549 | 6_1:-44292147 | Msa0886120:CDS |
| CACAGTCATAGTCATCCTCC+GGG | 0.559092 | 6_1:-44292595 | Msa0886120:CDS |
| TTCTGCTGTAGATCCAGAAA+GGG | 0.565003 | 6_1:-44292572 | Msa0886120:CDS |
| AGATTCTGAGAGAAATTGCT+AGG | 0.568077 | 6_1:+44292241 | None:intergenic |
| GTTCTGCTGTAGATCCAGAA+AGG | 0.569845 | 6_1:-44292573 | Msa0886120:CDS |
| GACTGTGGATAGGTTTCTTG+CGG | 0.574041 | 6_1:+44292611 | None:intergenic |
| GCTGCCGACGCAAGCAGAGA+AGG | 0.576478 | 6_1:-44293925 | Msa0886120:CDS |
| AGAAACGATCTCATCTGTGG+TGG | 0.582151 | 6_1:+44293858 | None:intergenic |
| TGAAGCCTCCTTTGGATCAG+CGG | 0.591974 | 6_1:+44292177 | None:intergenic |
| GATTGGAAGGCATGGAGAAG+AGG | 0.593047 | 6_1:-44292432 | Msa0886120:CDS |
| CACATGCAGCCTGTTGCCGA+AGG | 0.596050 | 6_1:-44292280 | Msa0886120:CDS |
| TCTTCATTGTCTGAACAGCA+TGG | 0.597736 | 6_1:+44292079 | None:intergenic |
| TTACATAGGTATTGAGCTGA+CGG | 0.598207 | 6_1:+44293734 | None:intergenic |
| TCTGGATCTACAGCAGAACC+CGG | 0.614712 | 6_1:+44292577 | None:intergenic |
| GGATGACTATGACTGTGGAT+AGG | 0.617132 | 6_1:+44292601 | None:intergenic |
| CATACCTTCTCTGCTTGCGT+CGG | 0.620839 | 6_1:+44293921 | None:intergenic |
| GAAACGATCTCATCTGTGGT+GGG | 0.626600 | 6_1:+44293859 | None:intergenic |
| AGAACGCGAGAGAATTCAGG+AGG | 0.628084 | 6_1:+44293799 | None:intergenic |
| CCAAGAAACGATCTCATCTG+TGG | 0.633047 | 6_1:+44293855 | None:intergenic |
| ATGCTGTTCAGACAATGAAG+AGG | 0.637659 | 6_1:-44292077 | Msa0886120:CDS |
| TGACCCCGCTGATCCAAAGG+AGG | 0.662370 | 6_1:-44292182 | Msa0886120:CDS |
| GAACGCGAGAGAATTCAGGA+GGG | 0.662504 | 6_1:+44293800 | None:intergenic |
| TCTTCAGAAGACGTATGACA+TGG | 0.665030 | 6_1:-44293890 | Msa0886120:CDS |
| GCAGTGGCTGATGATGATTG+TGG | 0.706595 | 6_1:+44293946 | None:intergenic |
| AAGCCTCCTTTGGATCAGCG+GGG | 0.731334 | 6_1:+44292179 | None:intergenic |
| GGATCTACAGCAGAACCCGG+AGG | 0.744225 | 6_1:+44292580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44293364-44293383 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAAATTTTTCAT+TGG | + | chr6_1:44293364-44293383 | None:intergenic | 10.0% |
| !! | TTATCATATTTATATAGTTC+AGG | + | chr6_1:44292975-44292994 | None:intergenic | 15.0% |
| !! | ATGATTAAACAATAAAAATC+AGG | + | chr6_1:44293004-44293023 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44293276-44293295 | Msa0886120:intron | 15.0% |
| !! | TTATCATATTTATATAGTTC+AGG | + | chr6_1:44292975-44292994 | None:intergenic | 15.0% |
| !! | ATGATTAAACAATAAAAATC+AGG | + | chr6_1:44293004-44293023 | None:intergenic | 15.0% |
| !!! | ATGTATGTTTTAATTTGTTA+CGG | - | chr6_1:44293276-44293295 | Msa0886120:intron | 15.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44292402-44292421 | Msa0886120:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44292508-44292527 | Msa0886120:CDS | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | - | chr6_1:44292548-44292567 | Msa0886120:CDS | 20.0% |
| !! | ATATTCTTGTAGAGATTTAA+TGG | - | chr6_1:44293201-44293220 | Msa0886120:intron | 20.0% |
| !! | ATAATTATAGCTTAAGAGTT+TGG | + | chr6_1:44293529-44293548 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44293700-44293719 | Msa0886120:intron | 20.0% |
| !!! | TTTGTTGTATTTGTATGATT+TGG | - | chr6_1:44292402-44292421 | Msa0886120:CDS | 20.0% |
| !! | TGATTAGTAAGATAAGAATT+AGG | - | chr6_1:44292508-44292527 | Msa0886120:CDS | 20.0% |
| !! | ATTATTTCATTGAGTTTAGT+TGG | - | chr6_1:44292548-44292567 | Msa0886120:CDS | 20.0% |
| !! | ATATTCTTGTAGAGATTTAA+TGG | - | chr6_1:44293201-44293220 | Msa0886120:intron | 20.0% |
| !! | ATAATTATAGCTTAAGAGTT+TGG | + | chr6_1:44293529-44293548 | None:intergenic | 20.0% |
| !! | TGGAAACTTATAATAAGAAA+AGG | - | chr6_1:44293700-44293719 | Msa0886120:intron | 20.0% |
| ! | ATTCATCGAATTTCAATTAG+TGG | - | chr6_1:44292436-44292455 | Msa0886120:CDS | 25.0% |
| ! | ATTAGGAACAACTTTAGATT+TGG | - | chr6_1:44292525-44292544 | Msa0886120:CDS | 25.0% |
| ! | GATATTATAGTCTTCTTGTA+TGG | - | chr6_1:44292614-44292633 | Msa0886120:CDS | 25.0% |
| ! | ATACTGAATTATGTCATTGT+CGG | + | chr6_1:44292705-44292724 | None:intergenic | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | - | chr6_1:44292717-44292736 | Msa0886120:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | chr6_1:44292931-44292950 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44293087-44293106 | Msa0886120:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44293088-44293107 | Msa0886120:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44293116-44293135 | Msa0886120:intron | 25.0% |
| ! | CTTCATTAAACAAAAACTTC+AGG | + | chr6_1:44293180-44293199 | None:intergenic | 25.0% |
| ! | AATGGTAAATCGTTCAAAAT+AGG | - | chr6_1:44293219-44293238 | Msa0886120:intron | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44293694-44293713 | None:intergenic | 25.0% |
| ! | ATTCATCGAATTTCAATTAG+TGG | - | chr6_1:44292436-44292455 | Msa0886120:CDS | 25.0% |
| ! | ATTAGGAACAACTTTAGATT+TGG | - | chr6_1:44292525-44292544 | Msa0886120:CDS | 25.0% |
| ! | GATATTATAGTCTTCTTGTA+TGG | - | chr6_1:44292614-44292633 | Msa0886120:CDS | 25.0% |
| ! | ATACTGAATTATGTCATTGT+CGG | + | chr6_1:44292705-44292724 | None:intergenic | 25.0% |
| ! | TTCAGTATAATCATATGTGT+CGG | - | chr6_1:44292717-44292736 | Msa0886120:intron | 25.0% |
| ! | ATATTCAGAGACTAAATTGA+TGG | + | chr6_1:44292931-44292950 | None:intergenic | 25.0% |
| ! | TTGATATCTAAGTCTTAGAT+AGG | - | chr6_1:44293087-44293106 | Msa0886120:intron | 25.0% |
| ! | TGATATCTAAGTCTTAGATA+GGG | - | chr6_1:44293088-44293107 | Msa0886120:intron | 25.0% |
| ! | AAATAGAAATCATGCACTTA+TGG | - | chr6_1:44293116-44293135 | Msa0886120:intron | 25.0% |
| ! | CTTCATTAAACAAAAACTTC+AGG | + | chr6_1:44293180-44293199 | None:intergenic | 25.0% |
| ! | AATGGTAAATCGTTCAAAAT+AGG | - | chr6_1:44293219-44293238 | Msa0886120:intron | 25.0% |
| ! | ATTATAAGTTTCCAAATCCA+TGG | + | chr6_1:44293694-44293713 | None:intergenic | 25.0% |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44292196-44292215 | Msa0886120:CDS | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | + | chr6_1:44292256-44292275 | None:intergenic | 30.0% |
| AAAAAAATTTCTGCAGCATC+TGG | - | chr6_1:44292868-44292887 | Msa0886120:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44292942-44292961 | Msa0886120:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44292964-44292983 | None:intergenic | 30.0% | |
| ATCGTTCAAAATAGGTCTTA+TGG | - | chr6_1:44293227-44293246 | Msa0886120:intron | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44293302-44293321 | Msa0886120:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44293303-44293322 | Msa0886120:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44293380-44293399 | Msa0886120:intron | 30.0% | |
| ! | TTTGCAGAATTTCTTTGAGA+AGG | - | chr6_1:44293620-44293639 | Msa0886120:intron | 30.0% |
| ATAACAAAAGCTTCATCGTT+TGG | - | chr6_1:44292196-44292215 | Msa0886120:CDS | 30.0% | |
| ! | GAAATTGCTGTGTTTGAAAT+AGG | + | chr6_1:44292256-44292275 | None:intergenic | 30.0% |
| AAAAAAATTTCTGCAGCATC+TGG | - | chr6_1:44292868-44292887 | Msa0886120:intron | 30.0% | |
| TCTGAATATCACACTATTTC+CGG | - | chr6_1:44292942-44292961 | Msa0886120:intron | 30.0% | |
| ATATAGTTCAGGAACTAAAC+CGG | + | chr6_1:44292964-44292983 | None:intergenic | 30.0% | |
| ATCGTTCAAAATAGGTCTTA+TGG | - | chr6_1:44293227-44293246 | Msa0886120:intron | 30.0% | |
| !! | ATTTACGTGTGCTTTTTATC+AGG | - | chr6_1:44293302-44293321 | Msa0886120:intron | 30.0% |
| !! | TTTACGTGTGCTTTTTATCA+GGG | - | chr6_1:44293303-44293322 | Msa0886120:intron | 30.0% |
| AGATCAAAAACATCTTCTGA+CGG | - | chr6_1:44293380-44293399 | Msa0886120:intron | 30.0% | |
| ! | TTTGCAGAATTTCTTTGAGA+AGG | - | chr6_1:44293620-44293639 | Msa0886120:intron | 30.0% |
| ! | TCATACGTCTTCTGAAGAAA+CGG | + | chr6_1:44292129-44292148 | None:intergenic | 35.0% |
| ! | TGCTGTGTTTGAAATAGGTT+GGG | + | chr6_1:44292251-44292270 | None:intergenic | 35.0% |
| ! | TTGCTGTGTTTGAAATAGGT+TGG | + | chr6_1:44292252-44292271 | None:intergenic | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | + | chr6_1:44292290-44292309 | None:intergenic | 35.0% |
| ! | TAGCGTGAATTGACTTACAT+AGG | + | chr6_1:44292304-44292323 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | - | chr6_1:44292587-44292606 | Msa0886120:CDS | 35.0% | |
| ! | TGTGAATTGGTGGGTAATTT+AGG | - | chr6_1:44292817-44292836 | Msa0886120:intron | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44293168-44293187 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44293332-44293351 | Msa0886120:intron | 35.0% | |
| GCTTAAGAGTTTGGATTGAA+GGG | + | chr6_1:44293520-44293539 | None:intergenic | 35.0% | |
| AGCTTAAGAGTTTGGATTGA+AGG | + | chr6_1:44293521-44293540 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | + | chr6_1:44293680-44293699 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44293680-44293699 | Msa0886120:intron | 35.0% | |
| ! | AGATTCTGAGAGAAATTGCT+AGG | + | chr6_1:44293783-44293802 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | - | chr6_1:44293789-44293808 | Msa0886120:CDS | 35.0% | |
| ! | AAGGAGTGAATGATGTGTTT+TGG | - | chr6_1:44293898-44293917 | Msa0886120:CDS | 35.0% |
| ! | AGGAGTGAATGATGTGTTTT+GGG | - | chr6_1:44293899-44293918 | Msa0886120:CDS | 35.0% |
| ! | TCATACGTCTTCTGAAGAAA+CGG | + | chr6_1:44292129-44292148 | None:intergenic | 35.0% |
| ! | TGCTGTGTTTGAAATAGGTT+GGG | + | chr6_1:44292251-44292270 | None:intergenic | 35.0% |
| ! | TTGCTGTGTTTGAAATAGGT+TGG | + | chr6_1:44292252-44292271 | None:intergenic | 35.0% |
| !! | TTACATAGGTATTGAGCTGA+CGG | + | chr6_1:44292290-44292309 | None:intergenic | 35.0% |
| ! | TAGCGTGAATTGACTTACAT+AGG | + | chr6_1:44292304-44292323 | None:intergenic | 35.0% |
| GACATGAGAATGTTGAAAGA+TGG | - | chr6_1:44292587-44292606 | Msa0886120:CDS | 35.0% | |
| ! | TGTGAATTGGTGGGTAATTT+AGG | - | chr6_1:44292817-44292836 | Msa0886120:intron | 35.0% |
| AAAACTTCAGGAAGCAAATC+TGG | + | chr6_1:44293168-44293187 | None:intergenic | 35.0% | |
| AAAATCAGATCCTGATCGTT+GGG | - | chr6_1:44293332-44293351 | Msa0886120:intron | 35.0% | |
| GCTTAAGAGTTTGGATTGAA+GGG | + | chr6_1:44293520-44293539 | None:intergenic | 35.0% | |
| AGCTTAAGAGTTTGGATTGA+AGG | + | chr6_1:44293521-44293540 | None:intergenic | 35.0% | |
| ! | AATCCATGGATTCGATTTTG+CGG | + | chr6_1:44293680-44293699 | None:intergenic | 35.0% |
| CAAAATCGAATCCATGGATT+TGG | - | chr6_1:44293680-44293699 | Msa0886120:intron | 35.0% | |
| ! | AGATTCTGAGAGAAATTGCT+AGG | + | chr6_1:44293783-44293802 | None:intergenic | 35.0% |
| TTCTCTCAGAATCTTTCTGA+AGG | - | chr6_1:44293789-44293808 | Msa0886120:CDS | 35.0% | |
| ! | AAGGAGTGAATGATGTGTTT+TGG | - | chr6_1:44293898-44293917 | Msa0886120:CDS | 35.0% |
| ! | AGGAGTGAATGATGTGTTTT+GGG | - | chr6_1:44293899-44293918 | Msa0886120:CDS | 35.0% |
| TCTTCAGAAGACGTATGACA+TGG | - | chr6_1:44292131-44292150 | Msa0886120:CDS | 40.0% | |
| TTCGTTGTTTGTGATGTGTC+TGG | + | chr6_1:44292673-44292692 | None:intergenic | 40.0% | |
| AAATTAGGACCTACGAAGCA+AGG | + | chr6_1:44292785-44292804 | None:intergenic | 40.0% | |
| ! | GCTTCGTAGGTCCTAATTTT+CGG | - | chr6_1:44292786-44292805 | Msa0886120:intron | 40.0% |
| !! | TAGGTCCTAATTTTCGGTGT+GGG | - | chr6_1:44292792-44292811 | Msa0886120:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44292884-44292903 | Msa0886120:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44293331-44293350 | Msa0886120:intron | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | - | chr6_1:44293449-44293468 | Msa0886120:intron | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | chr6_1:44293565-44293584 | Msa0886120:intron | 40.0% |
| ! | TTTCTTTGAGAAGGCTCTTC+AGG | - | chr6_1:44293629-44293648 | Msa0886120:intron | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | + | chr6_1:44293679-44293698 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44293713-44293732 | Msa0886120:intron | 40.0% | |
| TCTGAGAGAAATTGCTAGGA+AGG | + | chr6_1:44293779-44293798 | None:intergenic | 40.0% | |
| AACAGCATGGACTTTCAGTA+AGG | + | chr6_1:44293932-44293951 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | chr6_1:44293945-44293964 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | chr6_1:44293944-44293963 | Msa0886120:CDS | 40.0% | |
| TCTTCAGAAGACGTATGACA+TGG | - | chr6_1:44292131-44292150 | Msa0886120:CDS | 40.0% | |
| TTCGTTGTTTGTGATGTGTC+TGG | + | chr6_1:44292673-44292692 | None:intergenic | 40.0% | |
| AAATTAGGACCTACGAAGCA+AGG | + | chr6_1:44292785-44292804 | None:intergenic | 40.0% | |
| ! | GCTTCGTAGGTCCTAATTTT+CGG | - | chr6_1:44292786-44292805 | Msa0886120:intron | 40.0% |
| !! | TAGGTCCTAATTTTCGGTGT+GGG | - | chr6_1:44292792-44292811 | Msa0886120:intron | 40.0% |
| !! | CATCTGGATCTTGGTAATGA+TGG | - | chr6_1:44292884-44292903 | Msa0886120:intron | 40.0% |
| GAAAATCAGATCCTGATCGT+TGG | - | chr6_1:44293331-44293350 | Msa0886120:intron | 40.0% | |
| TTCTGCTGTAGATCCAGAAA+GGG | - | chr6_1:44293449-44293468 | Msa0886120:intron | 40.0% | |
| ! | TTCAGCTGGAAGATTTTCAG+CGG | - | chr6_1:44293565-44293584 | Msa0886120:intron | 40.0% |
| ! | TTTCTTTGAGAAGGCTCTTC+AGG | - | chr6_1:44293629-44293648 | Msa0886120:intron | 40.0% |
| ! | ATCCATGGATTCGATTTTGC+GGG | + | chr6_1:44293679-44293698 | None:intergenic | 40.0% |
| TAAGAAAAGGCGATTGTCTC+AGG | - | chr6_1:44293713-44293732 | Msa0886120:intron | 40.0% | |
| TCTGAGAGAAATTGCTAGGA+AGG | + | chr6_1:44293779-44293798 | None:intergenic | 40.0% | |
| AACAGCATGGACTTTCAGTA+AGG | + | chr6_1:44293932-44293951 | None:intergenic | 40.0% | |
| TCTTCATTGTCTGAACAGCA+TGG | + | chr6_1:44293945-44293964 | None:intergenic | 40.0% | |
| ATGCTGTTCAGACAATGAAG+AGG | - | chr6_1:44293944-44293963 | Msa0886120:CDS | 40.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44292165-44292184 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44292166-44292185 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44292169-44292188 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44292166-44292185 | Msa0886120:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44292228-44292247 | None:intergenic | 45.0% | |
| TCCTCAGATTAGGTATGTCC+TGG | + | chr6_1:44292758-44292777 | None:intergenic | 45.0% | |
| ! | GTAGGTCCTAATTTTCGGTG+TGG | - | chr6_1:44292791-44292810 | Msa0886120:intron | 45.0% |
| ACACACCCACACCGAAAATT+AGG | + | chr6_1:44292800-44292819 | None:intergenic | 45.0% | |
| TTTCTGCAGCATCTGGATCT+TGG | - | chr6_1:44292875-44292894 | Msa0886120:intron | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | - | chr6_1:44293039-44293058 | Msa0886120:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44293165-44293184 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44293413-44293432 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44293423-44293442 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | - | chr6_1:44293448-44293467 | Msa0886120:intron | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | - | chr6_1:44293551-44293570 | Msa0886120:intron | 45.0% | |
| TTCCCGCAAAATCGAATCCA+TGG | - | chr6_1:44293674-44293693 | Msa0886120:intron | 45.0% | |
| AAGGTCAACCAAGCTACCTT+CGG | + | chr6_1:44293760-44293779 | None:intergenic | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | - | chr6_1:44293801-44293820 | Msa0886120:CDS | 45.0% |
| ACATTACCTGAAGCCTCCTT+TGG | + | chr6_1:44293855-44293874 | None:intergenic | 45.0% | |
| GAAACGATCTCATCTGTGGT+GGG | + | chr6_1:44292165-44292184 | None:intergenic | 45.0% | |
| AGAAACGATCTCATCTGTGG+TGG | + | chr6_1:44292166-44292185 | None:intergenic | 45.0% | |
| CCAAGAAACGATCTCATCTG+TGG | + | chr6_1:44292169-44292188 | None:intergenic | 45.0% | |
| CCACAGATGAGATCGTTTCT+TGG | - | chr6_1:44292166-44292185 | Msa0886120:CDS | 45.0% | |
| AGAAGAACGCGAGAGAATTC+AGG | + | chr6_1:44292228-44292247 | None:intergenic | 45.0% | |
| TCCTCAGATTAGGTATGTCC+TGG | + | chr6_1:44292758-44292777 | None:intergenic | 45.0% | |
| ! | GTAGGTCCTAATTTTCGGTG+TGG | - | chr6_1:44292791-44292810 | Msa0886120:intron | 45.0% |
| ACACACCCACACCGAAAATT+AGG | + | chr6_1:44292800-44292819 | None:intergenic | 45.0% | |
| TTTCTGCAGCATCTGGATCT+TGG | - | chr6_1:44292875-44292894 | Msa0886120:intron | 45.0% | |
| CGTAGACATCTCAAGCATCT+AGG | - | chr6_1:44293039-44293058 | Msa0886120:intron | 45.0% | |
| ACTTCAGGAAGCAAATCTGG+CGG | + | chr6_1:44293165-44293184 | None:intergenic | 45.0% | |
| GACTGTGGATAGGTTTCTTG+CGG | + | chr6_1:44293413-44293432 | None:intergenic | 45.0% | |
| GGATGACTATGACTGTGGAT+AGG | + | chr6_1:44293423-44293442 | None:intergenic | 45.0% | |
| GTTCTGCTGTAGATCCAGAA+AGG | - | chr6_1:44293448-44293467 | Msa0886120:intron | 45.0% | |
| TGAGACAGAAAAGCTTCAGC+TGG | - | chr6_1:44293551-44293570 | Msa0886120:intron | 45.0% | |
| TTCCCGCAAAATCGAATCCA+TGG | - | chr6_1:44293674-44293693 | Msa0886120:intron | 45.0% | |
| AAGGTCAACCAAGCTACCTT+CGG | + | chr6_1:44293760-44293779 | None:intergenic | 45.0% | |
| ! | CTTTCTGAAGGAGAACTGAC+AGG | - | chr6_1:44293801-44293820 | Msa0886120:CDS | 45.0% |
| ACATTACCTGAAGCCTCCTT+TGG | + | chr6_1:44293855-44293874 | None:intergenic | 45.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | + | chr6_1:44292078-44292097 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTGCGT+CGG | + | chr6_1:44292103-44292122 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44292224-44292243 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44292225-44292244 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | + | chr6_1:44292280-44292299 | None:intergenic | 50.0% |
| GATTAGGTATGTCCTGGCGT+CGG | + | chr6_1:44292752-44292771 | None:intergenic | 50.0% | |
| GCCAGGACATACCTAATCTG+AGG | - | chr6_1:44292754-44292773 | Msa0886120:intron | 50.0% | |
| GCAAGGACACTCCTCAGATT+AGG | + | chr6_1:44292768-44292787 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44292804-44292823 | Msa0886120:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44292808-44292827 | Msa0886120:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44293345-44293364 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44293425-44293444 | Msa0886120:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44293426-44293445 | Msa0886120:intron | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | + | chr6_1:44293447-44293466 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44293458-44293477 | Msa0886120:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44293465-44293484 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | - | chr6_1:44293572-44293591 | Msa0886120:intron | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+AGG | - | chr6_1:44293576-44293595 | Msa0886120:intron | 50.0% |
| ! | GATTGGAAGGCATGGAGAAG+AGG | - | chr6_1:44293589-44293608 | Msa0886120:intron | 50.0% |
| TGAAGCCTCCTTTGGATCAG+CGG | + | chr6_1:44293847-44293866 | None:intergenic | 50.0% | |
| ! | GCAGTGGCTGATGATGATTG+TGG | + | chr6_1:44292078-44292097 | None:intergenic | 50.0% |
| CATACCTTCTCTGCTTGCGT+CGG | + | chr6_1:44292103-44292122 | None:intergenic | 50.0% | |
| GAACGCGAGAGAATTCAGGA+GGG | + | chr6_1:44292224-44292243 | None:intergenic | 50.0% | |
| AGAACGCGAGAGAATTCAGG+AGG | + | chr6_1:44292225-44292244 | None:intergenic | 50.0% | |
| ! | ATTGAGCTGACGGATGAAGC+TGG | + | chr6_1:44292280-44292299 | None:intergenic | 50.0% |
| GATTAGGTATGTCCTGGCGT+CGG | + | chr6_1:44292752-44292771 | None:intergenic | 50.0% | |
| GCCAGGACATACCTAATCTG+AGG | - | chr6_1:44292754-44292773 | Msa0886120:intron | 50.0% | |
| GCAAGGACACTCCTCAGATT+AGG | + | chr6_1:44292768-44292787 | None:intergenic | 50.0% | |
| ! | TTCGGTGTGGGTGTGTGAAT+TGG | - | chr6_1:44292804-44292823 | Msa0886120:intron | 50.0% |
| GTGTGGGTGTGTGAATTGGT+GGG | - | chr6_1:44292808-44292827 | Msa0886120:intron | 50.0% | |
| TTGGCAAACTCCCAACGATC+AGG | + | chr6_1:44293345-44293364 | None:intergenic | 50.0% | |
| CCACAGTCATAGTCATCCTC+CGG | - | chr6_1:44293425-44293444 | Msa0886120:intron | 50.0% | |
| CACAGTCATAGTCATCCTCC+GGG | - | chr6_1:44293426-44293445 | Msa0886120:intron | 50.0% | |
| TCTGGATCTACAGCAGAACC+CGG | + | chr6_1:44293447-44293466 | None:intergenic | 50.0% | |
| AGATCCAGAAAGGGCAGCAT+TGG | - | chr6_1:44293458-44293477 | Msa0886120:intron | 50.0% | |
| TTCTCCAATGCTGCCCTTTC+TGG | + | chr6_1:44293465-44293484 | None:intergenic | 50.0% | |
| ! | GGAAGATTTTCAGCGGCGAT+TGG | - | chr6_1:44293572-44293591 | Msa0886120:intron | 50.0% |
| ! | GATTTTCAGCGGCGATTGGA+AGG | - | chr6_1:44293576-44293595 | Msa0886120:intron | 50.0% |
| ! | GATTGGAAGGCATGGAGAAG+AGG | - | chr6_1:44293589-44293608 | Msa0886120:intron | 50.0% |
| TGAAGCCTCCTTTGGATCAG+CGG | + | chr6_1:44293847-44293866 | None:intergenic | 50.0% | |
| CGACGCAAGCAGAGAAGGTA+TGG | - | chr6_1:44292101-44292120 | Msa0886120:CDS | 55.0% | |
| !! | GAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44292773-44292792 | Msa0886120:intron | 55.0% |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44292807-44292826 | Msa0886120:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44293160-44293179 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44293161-44293180 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44293162-44293181 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44293428-44293447 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44293753-44293772 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | - | chr6_1:44293836-44293855 | Msa0886120:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | + | chr6_1:44293845-44293864 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | + | chr6_1:44293846-44293865 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | - | chr6_1:44293846-44293865 | Msa0886120:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44293874-44293893 | Msa0886120:CDS | 55.0% | |
| CGACGCAAGCAGAGAAGGTA+TGG | - | chr6_1:44292101-44292120 | Msa0886120:CDS | 55.0% | |
| !! | GAGGAGTGTCCTTGCTTCGT+AGG | - | chr6_1:44292773-44292792 | Msa0886120:intron | 55.0% |
| GGTGTGGGTGTGTGAATTGG+TGG | - | chr6_1:44292807-44292826 | Msa0886120:intron | 55.0% | |
| AGGAAGCAAATCTGGCGGTG+GGG | + | chr6_1:44293160-44293179 | None:intergenic | 55.0% | |
| CAGGAAGCAAATCTGGCGGT+GGG | + | chr6_1:44293161-44293180 | None:intergenic | 55.0% | |
| TCAGGAAGCAAATCTGGCGG+TGG | + | chr6_1:44293162-44293181 | None:intergenic | 55.0% | |
| CCGGAGGATGACTATGACTG+TGG | + | chr6_1:44293428-44293447 | None:intergenic | 55.0% | |
| ACCAAGCTACCTTCGGCAAC+AGG | + | chr6_1:44293753-44293772 | None:intergenic | 55.0% | |
| AACTGACCCCGCTGATCCAA+AGG | - | chr6_1:44293836-44293855 | Msa0886120:CDS | 55.0% | |
| AAGCCTCCTTTGGATCAGCG+GGG | + | chr6_1:44293845-44293864 | None:intergenic | 55.0% | |
| GAAGCCTCCTTTGGATCAGC+GGG | + | chr6_1:44293846-44293865 | None:intergenic | 55.0% | |
| GCTGATCCAAAGGAGGCTTC+AGG | - | chr6_1:44293846-44293865 | Msa0886120:CDS | 55.0% | |
| TCCAAGTCGAAGCAGCTGCT+CGG | - | chr6_1:44293874-44293893 | Msa0886120:CDS | 55.0% | |
| GGATCTACAGCAGAACCCGG+AGG | + | chr6_1:44293444-44293463 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGAAGGCA+TGG | - | chr6_1:44293581-44293600 | Msa0886120:intron | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | - | chr6_1:44293741-44293760 | Msa0886120:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44293749-44293768 | Msa0886120:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | - | chr6_1:44293839-44293858 | Msa0886120:CDS | 60.0% | |
| GGATCTACAGCAGAACCCGG+AGG | + | chr6_1:44293444-44293463 | None:intergenic | 60.0% | |
| TCAGCGGCGATTGGAAGGCA+TGG | - | chr6_1:44293581-44293600 | Msa0886120:intron | 60.0% | |
| CACATGCAGCCTGTTGCCGA+AGG | - | chr6_1:44293741-44293760 | Msa0886120:CDS | 60.0% | |
| GCCTGTTGCCGAAGGTAGCT+TGG | - | chr6_1:44293749-44293768 | Msa0886120:CDS | 60.0% | |
| TGACCCCGCTGATCCAAAGG+AGG | - | chr6_1:44293839-44293858 | Msa0886120:CDS | 60.0% | |
| ! | TCTGCTTGCGTCGGCAGCAG+TGG | + | chr6_1:44292094-44292113 | None:intergenic | 65.0% |
| GCTGCCGACGCAAGCAGAGA+AGG | - | chr6_1:44292096-44292115 | Msa0886120:CDS | 65.0% | |
| ! | CGGTGTTAGACACCGACGCC+AGG | - | chr6_1:44292737-44292756 | Msa0886120:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44293878-44293897 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+AGG | - | chr6_1:44293879-44293898 | Msa0886120:CDS | 65.0% | |
| ! | TCTGCTTGCGTCGGCAGCAG+TGG | + | chr6_1:44292094-44292113 | None:intergenic | 65.0% |
| GCTGCCGACGCAAGCAGAGA+AGG | - | chr6_1:44292096-44292115 | Msa0886120:CDS | 65.0% | |
| ! | CGGTGTTAGACACCGACGCC+AGG | - | chr6_1:44292737-44292756 | Msa0886120:intron | 65.0% |
| GCCGAGCAGCTGCTTCGACT+TGG | + | chr6_1:44293878-44293897 | None:intergenic | 65.0% | |
| GTCGAAGCAGCTGCTCGGCA+AGG | - | chr6_1:44293879-44293898 | Msa0886120:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 44292063 | 44293980 | 44292063 | ID=Msa0886120;Name=Msa0886120 |
| chr6_1 | mRNA | 44292063 | 44293980 | 44292063 | ID=Msa0886120-mRNA-1;Parent=Msa0886120;Name=Msa0886120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|299 |
| chr6_1 | exon | 44293738 | 44293980 | 44293738 | ID=Msa0886120-mRNA-1:exon:9511;Parent=Msa0886120-mRNA-1 |
| chr6_1 | exon | 44292063 | 44292719 | 44292063 | ID=Msa0886120-mRNA-1:exon:9510;Parent=Msa0886120-mRNA-1 |
| chr6_1 | CDS | 44293738 | 44293980 | 44293738 | ID=Msa0886120-mRNA-1:cds;Parent=Msa0886120-mRNA-1 |
| chr6_1 | CDS | 44292063 | 44292719 | 44292063 | ID=Msa0886120-mRNA-1:cds;Parent=Msa0886120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
